AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053097


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053097.t1 MTR_6g004220 94.867 487 11 2 1 480 1 480 0.0 928
MS.gene053097.t1 MTR_6g004220 95.054 465 9 2 1 458 8 465 0.0 887
MS.gene053097.t1 MTR_6g004220 94.710 397 7 2 1 390 8 397 0.0 757
MS.gene053097.t1 MTR_7g082800 75.064 393 98 0 83 475 1 393 0.0 630
MS.gene053097.t1 MTR_6g004220 93.354 316 7 2 1 309 8 316 0.0 594
MS.gene053097.t1 MTR_7g082810 52.790 466 209 3 15 470 2 466 1.83e-174 499
MS.gene053097.t1 MTR_1g108840 47.835 485 244 3 1 478 13 495 1.31e-162 469
MS.gene053097.t1 MTR_1g108990 49.471 473 231 2 10 475 5 476 1.28e-161 466
MS.gene053097.t1 MTR_1g109060 49.676 463 225 2 13 468 7 468 4.92e-157 454
MS.gene053097.t1 MTR_1g109060 49.453 457 221 3 9 458 5 458 3.30e-151 440
MS.gene053097.t1 MTR_6g081410 47.722 461 231 3 15 466 10 469 1.13e-148 433
MS.gene053097.t1 MTR_6g081780 47.732 463 232 3 15 468 10 471 4.03e-148 432
MS.gene053097.t1 MTR_6g066380 47.566 452 226 4 33 475 30 479 4.57e-137 404
MS.gene053097.t1 MTR_6g081810 44.538 476 228 5 7 475 5 451 3.28e-131 388
MS.gene053097.t1 MTR_6g081300 42.641 462 253 3 20 474 4 460 3.58e-126 375
MS.gene053097.t1 MTR_1g108810 43.966 464 245 4 7 458 8 468 4.41e-125 373
MS.gene053097.t1 MTR_6g081400 43.694 444 243 1 30 466 15 458 1.90e-123 368
MS.gene053097.t1 MTR_8g106670 42.163 453 254 2 21 466 3 454 4.02e-122 365
MS.gene053097.t1 MTR_6g081240 39.683 441 258 2 25 458 5 444 3.32e-118 354
MS.gene053097.t1 MTR_6g081310 41.348 445 243 2 48 474 14 458 3.63e-116 350
MS.gene053097.t1 MTR_6g081390 41.441 444 253 1 30 466 12 455 2.17e-112 340
MS.gene053097.t1 MTR_2g088400 37.037 486 287 3 12 478 21 506 2.51e-107 328
MS.gene053097.t1 MTR_4g048000 35.616 511 295 4 1 477 7 517 6.72e-104 320
MS.gene053097.t1 MTR_2g022980 37.783 442 269 1 31 466 49 490 3.74e-98 304
MS.gene053097.t1 MTR_2g078930 36.667 480 287 5 7 471 12 489 1.80e-95 297
MS.gene053097.t1 MTR_2g088400 36.842 437 257 3 12 429 21 457 3.32e-93 290
MS.gene053097.t1 MTR_2g078960 36.853 464 283 3 1 457 6 466 1.62e-91 286
MS.gene053097.t1 MTR_2g079020 35.590 458 281 3 13 457 14 470 9.24e-89 280
MS.gene053097.t1 MTR_8g069470 34.990 483 300 5 6 476 25 505 1.35e-87 278
MS.gene053097.t1 MTR_2g078970 36.156 437 269 4 29 457 30 464 1.35e-83 266
MS.gene053097.t1 MTR_5g033100 35.650 446 278 3 28 466 54 497 1.09e-82 265
MS.gene053097.t1 MTR_5g032720 32.860 493 308 7 2 477 3 489 6.46e-81 259
MS.gene053097.t1 MTR_1g021740 33.962 477 297 6 5 466 3 476 3.20e-79 255
MS.gene053097.t1 MTR_7g087410 33.750 480 303 5 9 474 10 488 1.39e-77 251
MS.gene053097.t1 MTR_1g101500 32.245 490 304 9 8 478 39 519 1.22e-74 244
MS.gene053097.t1 MTR_5g032750 34.737 475 284 10 4 463 12 475 1.53e-74 243
MS.gene053097.t1 MTR_7g087430 36.719 384 242 1 83 466 1 383 1.95e-73 237
MS.gene053097.t1 MTR_7g087400 32.377 488 311 8 2 476 3 484 9.13e-73 238
MS.gene053097.t1 MTR_3g099700 33.811 488 309 6 1 479 20 502 1.76e-72 238
MS.gene053097.t1 MTR_8g063590 33.407 452 292 4 31 474 54 504 3.48e-72 237
MS.gene053097.t1 MTR_0039s0080 31.277 470 309 4 5 464 13 478 6.27e-72 237
MS.gene053097.t1 MTR_5g010830 31.381 478 305 8 1 464 37 505 1.21e-71 236
MS.gene053097.t1 MTR_7g087410 35.000 400 251 2 83 474 1 399 1.37e-71 233
MS.gene053097.t1 MTR_5g067460 30.022 463 310 5 13 464 36 495 4.26e-71 236
MS.gene053097.t1 MTR_6g043810 30.754 491 309 7 12 475 2 488 3.73e-70 232
MS.gene053097.t1 MTR_6g043810 30.754 491 309 7 12 475 12 498 4.79e-70 232
MS.gene053097.t1 MTR_5g090290 32.957 443 289 2 31 466 47 488 1.44e-69 232
MS.gene053097.t1 MTR_3g111020 29.449 472 315 6 5 464 26 491 5.16e-68 227
MS.gene053097.t1 MTR_7g087370 31.070 486 291 8 2 476 3 455 1.28e-66 221
MS.gene053097.t1 MTR_3g099720 31.453 461 303 4 25 474 32 490 2.05e-64 216
MS.gene053097.t1 MTR_1g100180 31.057 454 303 4 20 466 33 483 2.82e-61 208
MS.gene053097.t1 MTR_6g027200 31.780 472 300 8 9 466 14 477 8.81e-61 207
MS.gene053097.t1 MTR_6g047640 30.867 473 310 8 7 466 3 471 6.88e-59 201
MS.gene053097.t1 MTR_6g047610 28.151 476 318 7 7 466 3 470 4.22e-58 199
MS.gene053097.t1 MTR_4g027920 29.464 448 298 6 30 464 156 598 4.43e-58 202
MS.gene053097.t1 MTR_6g047640 30.233 473 294 9 7 466 3 452 1.34e-57 197
MS.gene053097.t1 MTR_8g102430 29.978 447 281 7 26 463 19 442 1.05e-56 195
MS.gene053097.t1 MTR_6g027190 30.042 476 310 5 1 466 3 465 9.37e-56 193
MS.gene053097.t1 MTR_2g078990 35.836 293 188 0 165 457 1 293 4.77e-55 187
MS.gene053097.t1 MTR_5g087930 32.678 407 235 9 55 449 51 430 7.31e-55 190
MS.gene053097.t1 MTR_2g435930 28.632 468 310 4 29 473 18 484 1.42e-54 191
MS.gene053097.t1 MTR_6g088805 27.349 479 308 9 3 463 7 463 3.68e-54 189
MS.gene053097.t1 MTR_5g011540 29.759 457 300 5 30 472 43 492 6.02e-51 181
MS.gene053097.t1 MTR_6g047590 29.747 474 313 7 7 466 3 470 1.26e-48 174
MS.gene053097.t1 MTR_5g090280 26.988 415 259 5 83 465 1 403 8.13e-40 149
MS.gene053097.t1 MTR_2g079030 38.462 195 120 0 263 457 319 513 2.99e-38 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053097.t1 AT1G66760 47.423 485 244 3 1 478 1 481 1.56e-168 484
MS.gene053097.t1 AT1G64820 49.272 481 234 3 4 475 2 481 6.53e-166 478
MS.gene053097.t1 AT1G71140 50.439 456 218 2 21 469 16 470 1.26e-162 469
MS.gene053097.t1 AT1G66760 47.527 465 233 3 1 458 1 461 4.10e-161 464
MS.gene053097.t1 AT1G66780 50.108 461 219 3 18 468 19 478 3.12e-157 455
MS.gene053097.t1 AT2G04090 48.786 453 224 2 27 472 26 477 1.73e-151 440
MS.gene053097.t1 AT2G04100 48.472 458 228 2 27 477 26 482 8.22e-151 439
MS.gene053097.t1 AT1G15170 46.467 467 237 4 8 466 14 475 4.72e-147 429
MS.gene053097.t1 AT1G15150 46.102 449 234 2 25 466 25 472 7.07e-147 429
MS.gene053097.t1 AT2G04040 46.667 450 232 2 26 468 22 470 1.32e-146 428
MS.gene053097.t1 AT2G04080 44.351 478 254 3 8 478 4 476 1.66e-146 427
MS.gene053097.t1 AT5G52450 48.786 453 224 2 25 470 20 471 1.10e-145 426
MS.gene053097.t1 AT2G04050 45.923 466 238 3 14 472 16 474 3.89e-145 424
MS.gene053097.t1 AT2G04070 46.966 445 228 2 31 468 27 470 7.14e-145 423
MS.gene053097.t1 AT2G04100 48.747 439 217 2 27 458 26 463 1.19e-144 422
MS.gene053097.t1 AT1G15160 45.657 449 236 2 25 466 25 472 3.32e-144 422
MS.gene053097.t1 AT2G04080 43.886 458 249 2 8 458 4 460 2.10e-140 412
MS.gene053097.t1 AT1G73700 47.718 482 237 4 1 475 1 474 1.89e-138 407
MS.gene053097.t1 AT2G34360 46.522 460 229 6 20 470 15 466 1.91e-137 404
MS.gene053097.t1 AT1G15180 44.754 467 245 4 8 466 15 476 6.37e-133 393
MS.gene053097.t1 AT1G66760 46.348 397 202 3 1 390 1 393 6.73e-130 382
MS.gene053097.t1 AT1G15150 47.592 353 185 0 114 466 4 356 5.10e-123 364
MS.gene053097.t1 AT1G66760 49.249 333 169 0 126 458 1 333 9.66e-122 359
MS.gene053097.t1 AT1G15170 47.875 353 184 0 114 466 4 356 1.17e-121 360
MS.gene053097.t1 AT2G34360 41.612 459 211 4 20 470 15 424 5.86e-116 348
MS.gene053097.t1 AT3G21690 35.967 481 291 2 3 477 35 504 5.22e-97 301
MS.gene053097.t1 AT1G61890 36.087 460 275 5 31 478 47 499 9.90e-95 296
MS.gene053097.t1 AT1G11670 33.598 503 306 6 1 477 1 501 8.48e-92 288
MS.gene053097.t1 AT3G23550 36.580 462 273 5 12 457 6 463 1.34e-91 286
MS.gene053097.t1 AT1G61890 36.364 440 262 4 31 458 47 480 1.53e-91 287
MS.gene053097.t1 AT3G23560 36.034 469 279 6 6 457 7 471 1.67e-88 279
MS.gene053097.t1 AT3G26590 34.298 484 297 5 2 466 4 485 3.21e-87 276
MS.gene053097.t1 AT4G21910 36.323 446 269 4 31 466 57 497 8.19e-87 275
MS.gene053097.t1 AT4G21910 36.323 446 269 4 31 466 57 497 8.19e-87 275
MS.gene053097.t1 AT4G21903 38.072 415 244 4 61 466 83 493 1.39e-86 275
MS.gene053097.t1 AT4G21910 36.099 446 270 4 31 466 55 495 1.67e-86 275
MS.gene053097.t1 AT4G21910 36.099 446 270 4 31 466 55 495 1.67e-86 275
MS.gene053097.t1 AT1G12950 35.443 474 289 4 2 468 46 509 2.80e-86 275
MS.gene053097.t1 AT4G21903 38.402 388 231 2 83 466 1 384 7.04e-86 269
MS.gene053097.t1 AT5G38030 35.371 458 287 3 28 478 42 497 1.53e-85 272
MS.gene053097.t1 AT1G15180 46.071 280 151 0 111 390 1 280 1.03e-84 267
MS.gene053097.t1 AT4G21903 36.977 430 254 5 61 477 83 508 4.14e-83 266
MS.gene053097.t1 AT3G59030 34.305 446 283 4 29 466 49 492 2.42e-80 258
MS.gene053097.t1 AT3G26590 37.760 384 238 1 83 466 1 383 8.39e-80 254
MS.gene053097.t1 AT1G61890 35.280 411 248 4 31 429 47 451 4.10e-79 254
MS.gene053097.t1 AT5G65380 34.947 475 292 8 3 466 10 478 3.02e-78 253
MS.gene053097.t1 AT1G23300 34.188 468 295 5 18 475 32 496 3.61e-76 248
MS.gene053097.t1 AT1G47530 33.753 477 303 5 1 466 1 475 9.20e-76 246
MS.gene053097.t1 AT1G33110 33.263 472 304 6 4 466 7 476 2.69e-75 245
MS.gene053097.t1 AT5G44050 32.563 476 312 6 3 471 13 486 3.24e-74 242
MS.gene053097.t1 AT1G33100 33.902 469 302 5 4 466 7 473 4.05e-74 242
MS.gene053097.t1 AT5G10420 33.475 472 302 5 3 466 12 479 3.11e-73 239
MS.gene053097.t1 AT1G33090 33.686 472 302 6 4 466 7 476 6.13e-72 236
MS.gene053097.t1 AT4G29140 31.743 482 313 5 2 474 31 505 9.07e-71 234
MS.gene053097.t1 AT5G52050 31.959 485 296 10 1 463 7 479 3.87e-70 232
MS.gene053097.t1 AT4G23030 31.884 483 311 5 9 476 8 487 1.65e-69 230
MS.gene053097.t1 AT1G33080 32.510 486 315 6 4 477 7 491 1.75e-69 230
MS.gene053097.t1 AT3G23560 35.323 402 239 6 6 390 7 404 3.02e-69 227
MS.gene053097.t1 AT1G33080 32.906 468 305 5 4 463 7 473 5.40e-69 228
MS.gene053097.t1 AT1G47530 35.417 384 247 1 83 466 1 383 7.76e-69 225
MS.gene053097.t1 AT4G00350 33.705 448 277 8 31 466 88 527 1.53e-64 218
MS.gene053097.t1 AT1G71870 30.962 478 299 8 12 462 6 479 1.47e-63 214
MS.gene053097.t1 AT2G38510 27.314 443 313 3 30 464 5 446 1.61e-62 211
MS.gene053097.t1 AT5G19700 30.454 463 300 7 30 476 35 491 1.57e-61 209
MS.gene053097.t1 AT1G58340 28.633 461 317 4 29 480 56 513 8.10e-61 208
MS.gene053097.t1 AT5G17700 30.064 469 321 3 4 466 7 474 8.34e-59 202
MS.gene053097.t1 AT5G17700 30.064 469 321 3 4 466 7 474 8.34e-59 202
MS.gene053097.t1 AT3G03620 32.152 395 265 3 82 475 94 486 3.93e-57 197
MS.gene053097.t1 AT3G03620 32.152 395 265 3 82 475 94 486 3.93e-57 197
MS.gene053097.t1 AT4G25640 31.368 475 311 4 4 466 2 473 9.77e-57 196
MS.gene053097.t1 AT4G25640 31.368 475 311 4 4 466 2 473 1.53e-56 196
MS.gene053097.t1 AT4G22790 31.180 449 295 5 26 463 25 470 2.27e-56 195
MS.gene053097.t1 AT5G49130 28.694 467 311 5 29 474 24 489 5.60e-56 194
MS.gene053097.t1 AT3G59030 32.703 370 239 4 29 390 49 416 6.90e-56 192
MS.gene053097.t1 AT1G33110 31.313 396 263 5 4 391 7 401 4.11e-51 179
MS.gene053097.t1 AT4G25640 31.235 429 280 4 6 422 4 429 5.80e-49 174
MS.gene053097.t1 AT2G04066 48.889 135 65 1 344 478 41 171 2.73e-37 135
MS.gene053097.t1 AT5G17700 27.226 393 279 3 4 390 7 398 1.02e-35 137

Find 104 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCCTATTTGTTGGATTC+TGG 0.144927 6.2:+215478 MS.gene053097:CDS
ATTCCTATTGGTTTGTTATT+AGG 0.201827 6.2:+217248 MS.gene053097:CDS
TAGCTATTGGAATTTCTTAT+TGG 0.229128 6.2:+215537 MS.gene053097:CDS
TTCCTTCTGGACTCATGTTT+TGG 0.233890 6.2:+215675 MS.gene053097:CDS
TGCAAATATGCTATTCCTTC+TGG 0.235933 6.2:+215662 MS.gene053097:CDS
GTTAGAGTGGTTGTGATTAT+TGG 0.240480 6.2:+216445 MS.gene053097:CDS
TACCTCATTCCCGCTCTATT+TGG 0.243762 6.2:+215362 MS.gene053097:CDS
GTTAGTGCTGATAGTCTAAT+TGG 0.244051 6.2:+216595 MS.gene053097:CDS
TGTGAATTACATTGCGGATA+TGG 0.251319 6.2:+216552 MS.gene053097:CDS
AGTCTAATTGGAGCTCTTTC+AGG 0.262673 6.2:+216607 MS.gene053097:CDS
ACAGCTCCCTTAGCTGTCTT+TGG 0.262861 6.2:-216424 None:intergenic
AATATCCACACTAGAGATAT+TGG 0.262994 6.2:-215269 None:intergenic
GGTATACTTGTTTCATTCTC+TGG 0.275398 6.2:+214012 MS.gene053097:CDS
ATTGGAGCTGCTTTAGCTAT+TGG 0.308771 6.2:+215524 MS.gene053097:CDS
CTTATTGGTTGAATGTGATA+TGG 0.309579 6.2:+215552 MS.gene053097:CDS
GAGGTTTCAAGTTGAGGATT+AGG 0.328796 6.2:-215824 None:intergenic
ACTCGTGTGTCAAATGAATT+AGG 0.338684 6.2:+216391 MS.gene053097:CDS
GGTTGAATGTGATATGGCTT+TGG 0.339522 6.2:+215558 MS.gene053097:CDS
GTTGAAGAAAGTGAGTTTCA+TGG 0.346264 6.2:+213915 MS.gene053097:CDS
TATATTGTGGGAATTCCTAT+TGG 0.359116 6.2:+217236 MS.gene053097:CDS
AAAACCAGAATCCAACAAAT+AGG 0.359230 6.2:-215482 None:intergenic
TTCTTTATTCCATATGCAAT+TGG 0.366046 6.2:+216257 MS.gene053097:CDS
TCAAGTGGTTTCTCTTATGA+TGG 0.367964 6.2:+213978 MS.gene053097:CDS
GTTGAATGTGATATGGCTTT+GGG 0.371323 6.2:+215559 MS.gene053097:CDS
ACCTTTGGTGCAGAGGAGTA+TGG 0.372023 6.2:+215191 MS.gene053097:CDS
TTGTGGATGGGAACTCTATC+AGG 0.380221 6.2:+217299 MS.gene053097:CDS
TTGGGAAACAAACTACAGTT+AGG 0.381023 6.2:-215250 None:intergenic
AAACCTCGGTTCTTTCTGTC+TGG 0.401635 6.2:+215840 MS.gene053097:CDS
ATGAGTAGAAAACACAATCT+TGG 0.406242 6.2:-215615 None:intergenic
GAGATTCTTATATTAATTGC+GGG 0.408863 6.2:+215794 MS.gene053097:CDS
CTTATGATGGTGGGACATCT+TGG 0.426032 6.2:+213991 MS.gene053097:CDS
AGGAGGTGGATTTCAAGAAA+TGG 0.431562 6.2:+217187 MS.gene053097:CDS
GAAAGATCATTCCCTGAGTC+TGG 0.432954 6.2:-215418 None:intergenic
AAACCTAATAACAAACCAAT+AGG 0.436422 6.2:-217251 None:intergenic
CATCTAAAATTAAATGCAAA+GGG 0.436535 6.2:+217275 MS.gene053097:CDS
GCATTGCAGTTGGGAATGGC+TGG 0.439253 6.2:+215143 MS.gene053097:intron
TTGTAACTGCATTAACTGAT+TGG 0.453816 6.2:+217351 MS.gene053097:CDS
GGAGGTGGATTTCAAGAAAT+GGG 0.458931 6.2:+217188 MS.gene053097:CDS
CCTTGGAGCTTACTATATTG+TGG 0.467917 6.2:+217223 MS.gene053097:CDS
GTTTGCATTGCAGTTGGGAA+TGG 0.469251 6.2:+215139 MS.gene053097:intron
GCAGAAGCTCCAATTGCATA+TGG 0.475350 6.2:-216266 None:intergenic
ATATCCACACTAGAGATATT+GGG 0.478394 6.2:-215268 None:intergenic
CTTGGAGCTTACTATATTGT+GGG 0.480379 6.2:+217224 MS.gene053097:CDS
TCATCTAAAATTAAATGCAA+AGG 0.487864 6.2:+217274 MS.gene053097:CDS
ACACTATGTGGACAAACCTT+TGG 0.487914 6.2:+215176 MS.gene053097:CDS
CTAAAATATTTCTAAAACAA+AGG 0.489364 6.2:-216501 None:intergenic
AAATGCAAAGGGATTGTGGA+TGG 0.492772 6.2:+217286 MS.gene053097:CDS
TCCATACTCCTCTGCACCAA+AGG 0.494105 6.2:-215192 None:intergenic
GAGTTTCATGGCAGCTCCAA+TGG 0.497826 6.2:+213927 MS.gene053097:CDS
GCAGGGGTTGCTAGAGGAGG+TGG 0.498862 6.2:+217173 MS.gene053097:intron
GTGTCAAATGAATTAGGAGC+AGG 0.499251 6.2:+216397 MS.gene053097:CDS
GATTCGCTATTTCCAGACTC+AGG 0.500456 6.2:+215406 MS.gene053097:CDS
AATTAAATGCAAAGGGATTG+TGG 0.500586 6.2:+217282 MS.gene053097:CDS
AGTGGTTTCTCTTATGATGG+TGG 0.502914 6.2:+213981 MS.gene053097:CDS
GCAGAGGAGTATGGAAAACT+TGG 0.503242 6.2:+215200 MS.gene053097:CDS
ATTAACTGATTGGCAGAAAG+AGG 0.504417 6.2:+217361 MS.gene053097:CDS
TGGGAAACAAACTACAGTTA+GGG 0.510311 6.2:-215249 None:intergenic
AGAACCGAGGTTTCAAGTTG+AGG 0.511415 6.2:-215830 None:intergenic
TGAGATTCTTATATTAATTG+CGG 0.521997 6.2:+215793 MS.gene053097:CDS
TTCACAATATCTTCTTCAAG+TGG 0.522208 6.2:+213963 MS.gene053097:CDS
TCATCACTCTTTCTTAGCAA+TGG 0.528379 6.2:-213844 None:intergenic
AACTAACAACACATTGGTGG+TGG 0.546469 6.2:+217544 MS.gene053097:CDS
GTGGTTTCTCTTATGATGGT+GGG 0.552777 6.2:+213982 MS.gene053097:CDS
CATTGCAGGCAACAAAAGCA+AGG 0.553104 6.2:+217495 MS.gene053097:intron
GTTTCCCAATATCTCTAGTG+TGG 0.553517 6.2:+215264 MS.gene053097:CDS
CAACTCTTCCATCACTTCCA+TGG 0.554813 6.2:-213867 None:intergenic
GAAACAGTTACAGCTACCAT+TGG 0.557714 6.2:-213943 None:intergenic
ATAGCATATTTGCAGAACTC+TGG 0.558784 6.2:-215653 None:intergenic
GGGAATCCAAAGACAGCTAA+GGG 0.558807 6.2:+216418 MS.gene053097:CDS
TCAGGGAATGATCTTTCCCA+TGG 0.560267 6.2:+215424 MS.gene053097:CDS
AGGGAATCCAAAGACAGCTA+AGG 0.561739 6.2:+216417 MS.gene053097:CDS
AAACTGTAGAGAGATGAGTA+AGG 0.563678 6.2:+213810 None:intergenic
CTGTAGAGAGATGAGTAAGG+AGG 0.568939 6.2:+213813 None:intergenic
AGCCAAATAGAGCGGGAATG+AGG 0.570337 6.2:-215364 None:intergenic
TGGACAAACCTTTGGTGCAG+AGG 0.570653 6.2:+215184 MS.gene053097:CDS
TACCAAAACATGAGTCCAGA+AGG 0.573401 6.2:-215677 None:intergenic
ATTCGCTATTTCCAGACTCA+GGG 0.576880 6.2:+215407 MS.gene053097:CDS
CATATTTGCAGAACTCTGGT+AGG 0.578691 6.2:-215649 None:intergenic
AGCTAAGGGAGCTGTTAGAG+TGG 0.582031 6.2:+216432 MS.gene053097:CDS
TTCAGCAAAAGACATGGCAA+TGG 0.584361 6.2:-214040 None:intergenic
AGTGCATAGCCAAATAGAGC+GGG 0.584898 6.2:-215371 None:intergenic
AGTGATGACCATGGAAGTGA+TGG 0.586777 6.2:+213859 MS.gene053097:CDS
CTAACAGAAACACAAAGAAG+AGG 0.588544 6.2:-216577 None:intergenic
AATGCAAAGGGATTGTGGAT+GGG 0.591123 6.2:+217287 MS.gene053097:CDS
AAGTTGGGATTAGGACACAT+TGG 0.599322 6.2:+215506 MS.gene053097:CDS
TAATCCTCAACTTGAAACCT+CGG 0.601964 6.2:+215826 MS.gene053097:CDS
ATGCAATTGGAGCTTCTGCA+AGG 0.601986 6.2:+216270 MS.gene053097:CDS
AATTAATATAAGAATCTCAA+AGG 0.607660 6.2:-215789 None:intergenic
AGATTCTTATATTAATTGCG+GGG 0.620537 6.2:+215795 MS.gene053097:CDS
CCACAATATAGTAAGCTCCA+AGG 0.626718 6.2:-217223 None:intergenic
TGAACTGCAGGGGTTGCTAG+AGG 0.635927 6.2:+217167 MS.gene053097:intron
ACTGCAGGGGTTGCTAGAGG+AGG 0.647610 6.2:+217170 MS.gene053097:intron
GAGGTGGATTTCAAGAAATG+GGG 0.650274 6.2:+217189 MS.gene053097:CDS
TGTCAAATGAATTAGGAGCA+GGG 0.652722 6.2:+216398 MS.gene053097:CDS
AGTAACTTCAGCAAAAGACA+TGG 0.654565 6.2:-214046 None:intergenic
ATTGCAGGCAACAAAAGCAA+GGG 0.658902 6.2:+217496 MS.gene053097:intron
TGGAATAAAGAAGTGCAATG+AGG 0.661666 6.2:-216246 None:intergenic
TGTGATTATTGGAATTGCTG+AGG 0.666119 6.2:+216456 MS.gene053097:CDS
AGGTGGATTTCAAGAAATGG+GGG 0.668457 6.2:+217190 MS.gene053097:CDS
ACAAGTTGTGAATTACATTG+CGG 0.676878 6.2:+216546 MS.gene053097:CDS
CTAAGAAAGAGTGATGACCA+TGG 0.683327 6.2:+213850 MS.gene053097:CDS
GGAGCATTAGAAACACTATG+TGG 0.708532 6.2:+215164 MS.gene053097:CDS
AAGTGCATAGCCAAATAGAG+CGG 0.722956 6.2:-215372 None:intergenic
TCACCAGACAGAAAGAACCG+AGG 0.782249 6.2:-215843 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATTAAATTCATTAAATA+AGG - chr6.2:215002-215021 None:intergenic 10.0%
!! AATTAATATAAGAATCTCAA+AGG - chr6.2:215792-215811 None:intergenic 15.0%
!!! CTAAAATATTTCTAAAACAA+AGG - chr6.2:216504-216523 None:intergenic 15.0%
!!! CTAGATTTTAATGTATATTT+TGG + chr6.2:216936-216955 MS.gene053097:intron 15.0%
!!! CTTTGTTTTAGAAATATTTT+AGG + chr6.2:216502-216521 MS.gene053097:CDS 15.0%
!!! TTTTTCCTTTATTTTTTTCA+GGG + chr6.2:214914-214933 MS.gene053097:intron 15.0%
!! AAAAAGTGGAATATACAAAA+GGG - chr6.2:214899-214918 None:intergenic 20.0%
!! AAAATCAGAAGAAGAAAAAT+AGG - chr6.2:214197-214216 None:intergenic 20.0%
!! AATAAAAACTAACAACACAT+TGG + chr6.2:217538-217557 MS.gene053097:CDS 20.0%
!! CTATAAAATCAATTAAATGG+TGG - chr6.2:214308-214327 None:intergenic 20.0%
!! GAAAAAAATAAAGGAAAAAG+TGG - chr6.2:214913-214932 None:intergenic 20.0%
!! GCTTCATAGTATAAATATAA+TGG + chr6.2:215094-215113 MS.gene053097:intron 20.0%
!! GTTGTTGTAAAAAAAAACAA+AGG - chr6.2:217451-217470 None:intergenic 20.0%
!! TGAGATTCTTATATTAATTG+CGG + chr6.2:215793-215812 MS.gene053097:CDS 20.0%
!! TGCTCTAATATATAATCATT+GGG + chr6.2:216737-216756 MS.gene053097:intron 20.0%
!! TGGCTATAAAATCAATTAAA+TGG - chr6.2:214311-214330 None:intergenic 20.0%
!! TGTACAAATACAGAAAATTT+AGG - chr6.2:214817-214836 None:intergenic 20.0%
!! TTTATAATGTATTGTCCAAA+TGG + chr6.2:215893-215912 MS.gene053097:intron 20.0%
!!! AAAGTACTAATCAAACATTT+TGG - chr6.2:214241-214260 None:intergenic 20.0%
!!! AAATTTTCATTTACTTTCTG+AGG + chr6.2:216826-216845 MS.gene053097:intron 20.0%
!!! AATTTTCATTTACTTTCTGA+GGG + chr6.2:216827-216846 MS.gene053097:intron 20.0%
!!! ATACTTTTATATGAACTGAT+TGG - chr6.2:214331-214350 None:intergenic 20.0%
!!! CATCTAAAATTAAATGCAAA+GGG + chr6.2:217275-217294 MS.gene053097:CDS 20.0%
!!! CTTTTTCCTTTATTTTTTTC+AGG + chr6.2:214913-214932 MS.gene053097:intron 20.0%
!!! GTATTTTAAACGGATATTTT+AGG + chr6.2:215977-215996 MS.gene053097:intron 20.0%
!!! TCATCTAAAATTAAATGCAA+AGG + chr6.2:217274-217293 MS.gene053097:CDS 20.0%
!!! TTTTAGAATGAAGATATTTG+TGG - chr6.2:216985-217004 None:intergenic 20.0%
! AAACCTAATAACAAACCAAT+AGG - chr6.2:217254-217273 None:intergenic 25.0%
! AAGGTATAAATATTTAGACG+AGG - chr6.2:214983-215002 None:intergenic 25.0%
! AATCCAAGAAAAACAAGAAA+AGG - chr6.2:214112-214131 None:intergenic 25.0%
! AATTCTCCTAGAAAATTATG+AGG + chr6.2:214635-214654 MS.gene053097:intron 25.0%
! ACTTTGTAACAGTAATAAAC+AGG + chr6.2:214256-214275 MS.gene053097:intron 25.0%
! AGATTCTTATATTAATTGCG+GGG + chr6.2:215795-215814 MS.gene053097:CDS 25.0%
! ATATTGCATATTATATGCAG+GGG + chr6.2:217047-217066 MS.gene053097:intron 25.0%
! ATTCTCCTAGAAAATTATGA+GGG + chr6.2:214636-214655 MS.gene053097:intron 25.0%
! CTGCTCTAATATATAATCAT+TGG + chr6.2:216736-216755 MS.gene053097:intron 25.0%
! CTTCACTCATTATATTCAAT+AGG - chr6.2:214425-214444 None:intergenic 25.0%
! GAAAAAGTGGAATATACAAA+AGG - chr6.2:214900-214919 None:intergenic 25.0%
! GAGATTCTTATATTAATTGC+GGG + chr6.2:215794-215813 MS.gene053097:CDS 25.0%
! GATATTGCATATTATATGCA+GGG + chr6.2:217046-217065 MS.gene053097:intron 25.0%
! GTTGTAAAAAAAAACAAAGG+TGG - chr6.2:217448-217467 None:intergenic 25.0%
! TAGCTATTGGAATTTCTTAT+TGG + chr6.2:215537-215556 MS.gene053097:CDS 25.0%
! TGAAAATATGAGGACTAATT+TGG + chr6.2:214587-214606 MS.gene053097:intron 25.0%
! TTCTTTATTCCATATGCAAT+TGG + chr6.2:216257-216276 MS.gene053097:CDS 25.0%
!! AAAGAAAAAGGTACAAAAGT+TGG - chr6.2:217421-217440 None:intergenic 25.0%
!! AGTTCTTAAAAATGTTTTGC+AGG + chr6.2:216044-216063 MS.gene053097:intron 25.0%
!! ATCATTCTCAATTTTCTTGT+GGG + chr6.2:214455-214474 MS.gene053097:intron 25.0%
!! ATCGACTTCAAAGATTATAT+TGG - chr6.2:215956-215975 None:intergenic 25.0%
!! GTTCTTAAAAATGTTTTGCA+GGG + chr6.2:216045-216064 MS.gene053097:intron 25.0%
!! TAGTCCTCATATTTTCATTT+TGG - chr6.2:214584-214603 None:intergenic 25.0%
!! TTCTGATTTTTGTATGGATT+AGG + chr6.2:214207-214226 MS.gene053097:intron 25.0%
!! TTCTTCTTCTGATTTTTGTA+TGG + chr6.2:214201-214220 MS.gene053097:intron 25.0%
!!! ATTCCTATTGGTTTGTTATT+AGG + chr6.2:217248-217267 MS.gene053097:CDS 25.0%
!!! CAATATTGTGTAGTTTTGAA+TGG + chr6.2:215762-215781 MS.gene053097:intron 25.0%
!!! GAAGTCGATAGTATTTTAAA+CGG + chr6.2:215967-215986 MS.gene053097:intron 25.0%
!!! GTTTTTTTTTACAACAACTG+AGG + chr6.2:217453-217472 MS.gene053097:intron 25.0%
!!! TGTTGTTAGTTTTTATTGAC+TGG - chr6.2:217535-217554 None:intergenic 25.0%
AAAAACTAACAACACATTGG+TGG + chr6.2:217541-217560 MS.gene053097:CDS 30.0%
AAAACCAGAATCCAACAAAT+AGG - chr6.2:215485-215504 None:intergenic 30.0%
AAAGGTGGTTGAAAAGAAAA+AGG - chr6.2:217433-217452 None:intergenic 30.0%
AACAAACAAACATCATGACA+TGG - chr6.2:216363-216382 None:intergenic 30.0%
AATATCCACACTAGAGATAT+TGG - chr6.2:215272-215291 None:intergenic 30.0%
AATCCATGCCACATAATATA+GGG - chr6.2:216147-216166 None:intergenic 30.0%
AATTAAATGCAAAGGGATTG+TGG + chr6.2:217282-217301 MS.gene053097:CDS 30.0%
ACAAACAAACATCATGACAT+GGG - chr6.2:216362-216381 None:intergenic 30.0%
ACAAGTTGTGAATTACATTG+CGG + chr6.2:216546-216565 MS.gene053097:CDS 30.0%
ATATAATGAATGTGAACTGC+AGG + chr6.2:217155-217174 MS.gene053097:intron 30.0%
ATATCCACACTAGAGATATT+GGG - chr6.2:215271-215290 None:intergenic 30.0%
ATGAGTAGAAAACACAATCT+TGG - chr6.2:215618-215637 None:intergenic 30.0%
CAAGAAAAACAAGAAAAGGA+AGG - chr6.2:214108-214127 None:intergenic 30.0%
CATGATATGTCACATATGTA+TGG - chr6.2:216307-216326 None:intergenic 30.0%
CCATAAATCGTTGTATTAGA+GGG + chr6.2:214546-214565 MS.gene053097:intron 30.0%
CGACATTGATACTAAAACAT+CGG - chr6.2:215054-215073 None:intergenic 30.0%
GGATATTGCATATTATATGC+AGG + chr6.2:217045-217064 MS.gene053097:intron 30.0%
GGATTTGTATACCATTCATT+TGG + chr6.2:214786-214805 MS.gene053097:intron 30.0%
GTCTCCAAAATGAAAATATG+AGG + chr6.2:214577-214596 MS.gene053097:intron 30.0%
TAAATGCATAGTTCACCATT+TGG - chr6.2:215911-215930 None:intergenic 30.0%
TAATCCATGCCACATAATAT+AGG - chr6.2:216148-216167 None:intergenic 30.0%
TACAAAAGGGACATTAAGAA+TGG - chr6.2:214886-214905 None:intergenic 30.0%
TATAATGAATGTGAACTGCA+GGG + chr6.2:217156-217175 MS.gene053097:intron 30.0%
TATATTGTGGGAATTCCTAT+TGG + chr6.2:217236-217255 MS.gene053097:CDS 30.0%
TCCATAAATCGTTGTATTAG+AGG + chr6.2:214545-214564 MS.gene053097:intron 30.0%
TTCACAATATCTTCTTCAAG+TGG + chr6.2:213963-213982 MS.gene053097:CDS 30.0%
TTGTAACTGCATTAACTGAT+TGG + chr6.2:217351-217370 MS.gene053097:CDS 30.0%
! AGTACACATTCACGTTTTTA+GGG + chr6.2:216880-216899 MS.gene053097:intron 30.0%
! CTCATGTGAAAGGTATATAA+TGG + chr6.2:214281-214300 MS.gene053097:intron 30.0%
! CTTATTGGTTGAATGTGATA+TGG + chr6.2:215552-215571 MS.gene053097:CDS 30.0%
! GATCATTCTCAATTTTCTTG+TGG + chr6.2:214454-214473 MS.gene053097:intron 30.0%
! TTTAGGATTCTCCAAATGAA+TGG - chr6.2:214800-214819 None:intergenic 30.0%
! TTTTGCACATTCCTATTTGT+TGG + chr6.2:215471-215490 MS.gene053097:CDS 30.0%
!!! ATCTTGGTTTTTTGACATGA+TGG - chr6.2:215602-215621 None:intergenic 30.0%
!!! CTTCCTTTTCTTGTTTTTCT+TGG + chr6.2:214106-214125 MS.gene053097:intron 30.0%
!!! TATTGTGTAGTTTTGAATGG+TGG + chr6.2:215765-215784 MS.gene053097:intron 30.0%
!!! TGGATTCTGGTTTTTAAGTT+GGG + chr6.2:215491-215510 MS.gene053097:CDS 30.0%
!!! TTGGATTCTGGTTTTTAAGT+TGG + chr6.2:215490-215509 MS.gene053097:CDS 30.0%
AAAAGGGACATTAAGAATGG+TGG - chr6.2:214883-214902 None:intergenic 35.0%
ACTCGTGTGTCAAATGAATT+AGG + chr6.2:216391-216410 MS.gene053097:CDS 35.0%
AGAGAGAAGAAGAACATACA+AGG - chr6.2:214083-214102 None:intergenic 35.0%
AGATACTGAGCTAAAAACCA+TGG - chr6.2:215444-215463 None:intergenic 35.0%
AGTAACTTCAGCAAAAGACA+TGG - chr6.2:214049-214068 None:intergenic 35.0%
ATAATGAATGTGAACTGCAG+GGG + chr6.2:217157-217176 MS.gene053097:intron 35.0%
ATAGCATATTTGCAGAACTC+TGG - chr6.2:215656-215675 None:intergenic 35.0%
ATTAACTGATTGGCAGAAAG+AGG + chr6.2:217361-217380 MS.gene053097:CDS 35.0%
CCCTCTAATACAACGATTTA+TGG - chr6.2:214549-214568 None:intergenic 35.0%
CTAACAGAAACACAAAGAAG+AGG - chr6.2:216580-216599 None:intergenic 35.0%
CTACACACAGAGTTGAAATA+AGG + chr6.2:214765-214784 MS.gene053097:intron 35.0%
CTTATTTCAACTCTGTGTGT+AGG - chr6.2:214767-214786 None:intergenic 35.0%
CTTGGAGCTTACTATATTGT+GGG + chr6.2:217224-217243 MS.gene053097:CDS 35.0%
GACATTATGACTGTGAAATG+TGG - chr6.2:214941-214960 None:intergenic 35.0%
GATACTGAGCTAAAAACCAT+GGG - chr6.2:215443-215462 None:intergenic 35.0%
GGTATACTTGTTTCATTCTC+TGG + chr6.2:214012-214031 MS.gene053097:CDS 35.0%
GGTTGAAAATCTTCGATCAT+AGG + chr6.2:215998-216017 MS.gene053097:intron 35.0%
GTGGACCCTGAAAAAAATAA+AGG - chr6.2:214922-214941 None:intergenic 35.0%
GTTAGAGTGGTTGTGATTAT+TGG + chr6.2:216445-216464 MS.gene053097:CDS 35.0%
GTTGAAGAAAGTGAGTTTCA+TGG + chr6.2:213915-213934 MS.gene053097:CDS 35.0%
GTTGAATGTGATATGGCTTT+GGG + chr6.2:215559-215578 MS.gene053097:CDS 35.0%
TAAACAGGATCTCATGTGAA+AGG + chr6.2:214271-214290 MS.gene053097:intron 35.0%
TAATCCTCAACTTGAAACCT+CGG + chr6.2:215826-215845 MS.gene053097:CDS 35.0%
TCAAGTGGTTTCTCTTATGA+TGG + chr6.2:213978-213997 MS.gene053097:CDS 35.0%
TCATAGCACCCTATATTATG+TGG + chr6.2:216136-216155 MS.gene053097:intron 35.0%
TCATCACTCTTTCTTAGCAA+TGG - chr6.2:213847-213866 None:intergenic 35.0%
TGCAAATATGCTATTCCTTC+TGG + chr6.2:215662-215681 MS.gene053097:CDS 35.0%
TGGGAAACAAACTACAGTTA+GGG - chr6.2:215252-215271 None:intergenic 35.0%
TGTACATCTCAACGATCTAA+CGG + chr6.2:214831-214850 MS.gene053097:intron 35.0%
TGTCAAATGAATTAGGAGCA+GGG + chr6.2:216398-216417 MS.gene053097:CDS 35.0%
TGTGAATTACATTGCGGATA+TGG + chr6.2:216552-216571 MS.gene053097:CDS 35.0%
TGTGATTATTGGAATTGCTG+AGG + chr6.2:216456-216475 MS.gene053097:CDS 35.0%
TTATGAGGGTTGTGTATTGA+TGG + chr6.2:214650-214669 MS.gene053097:intron 35.0%
TTGGGAAACAAACTACAGTT+AGG - chr6.2:215253-215272 None:intergenic 35.0%
TTTAGTATCAATGTCGTGTC+TGG + chr6.2:215058-215077 MS.gene053097:intron 35.0%
! ATCTAACGGCTCAAGTTTTA+GGG + chr6.2:214845-214864 MS.gene053097:intron 35.0%
! ATGTCTTTTGCTGAAGTTAC+TGG + chr6.2:214048-214067 MS.gene053097:intron 35.0%
! CACAACCCTCATAATTTTCT+AGG - chr6.2:214644-214663 None:intergenic 35.0%
! CAGTACACATTCACGTTTTT+AGG + chr6.2:216879-216898 MS.gene053097:intron 35.0%
! CATTCCTATTTGTTGGATTC+TGG + chr6.2:215478-215497 MS.gene053097:CDS 35.0%
! TGGAATAAAGAAGTGCAATG+AGG - chr6.2:216249-216268 None:intergenic 35.0%
! TTCTTGTTTGCATTGCAGTT+GGG + chr6.2:215134-215153 MS.gene053097:intron 35.0%
! TTTCTTGTTTGCATTGCAGT+TGG + chr6.2:215133-215152 MS.gene053097:intron 35.0%
!! GTTAGTGCTGATAGTCTAAT+TGG + chr6.2:216595-216614 MS.gene053097:CDS 35.0%
!!! ATGTTTTTTAGTCAAGACGC+TGG + chr6.2:215308-215327 MS.gene053097:CDS 35.0%
!!! CTGGTTTTTAAGTTGGGATT+AGG + chr6.2:215497-215516 MS.gene053097:CDS 35.0%
!!! TTTTTTGTCAAGTAGCCTAG+TGG - chr6.2:217106-217125 None:intergenic 35.0%
AAATGCAAAGGGATTGTGGA+TGG + chr6.2:217286-217305 MS.gene053097:CDS 40.0%
AACTAACAACACATTGGTGG+TGG + chr6.2:217544-217563 MS.gene053097:CDS 40.0%
AAGTGCATAGCCAAATAGAG+CGG - chr6.2:215375-215394 None:intergenic 40.0%
AAGTTGGGATTAGGACACAT+TGG + chr6.2:215506-215525 MS.gene053097:CDS 40.0%
AATGCAAAGGGATTGTGGAT+GGG + chr6.2:217287-217306 MS.gene053097:CDS 40.0%
ACACTATGTGGACAAACCTT+TGG + chr6.2:215176-215195 MS.gene053097:CDS 40.0%
ACAGAGTAGTTGGGTATAGT+TGG + chr6.2:214681-214700 MS.gene053097:intron 40.0%
AGTCTAATTGGAGCTCTTTC+AGG + chr6.2:216607-216626 MS.gene053097:CDS 40.0%
AGTGGTTTCTCTTATGATGG+TGG + chr6.2:213981-214000 MS.gene053097:CDS 40.0%
ATTGCAGGCAACAAAAGCAA+GGG + chr6.2:217496-217515 MS.gene053097:intron 40.0%
CATATTTGCAGAACTCTGGT+AGG - chr6.2:215652-215671 None:intergenic 40.0%
CCACAATATAGTAAGCTCCA+AGG - chr6.2:217226-217245 None:intergenic 40.0%
CCTTGGAGCTTACTATATTG+TGG + chr6.2:217223-217242 MS.gene053097:CDS 40.0%
CGTCACTCTTTGATCTTGTT+AGG - chr6.2:214359-214378 None:intergenic 40.0%
CTAAGAAAGAGTGATGACCA+TGG + chr6.2:213850-213869 MS.gene053097:CDS 40.0%
GAAACAGTTACAGCTACCAT+TGG - chr6.2:213946-213965 None:intergenic 40.0%
GCTTAGAGATGCAAACTAGT+TGG - chr6.2:214146-214165 None:intergenic 40.0%
GGTTGAATGTGATATGGCTT+TGG + chr6.2:215558-215577 MS.gene053097:CDS 40.0%
GTCGATGAATCGAGATTAGA+CGG - chr6.2:216963-216982 None:intergenic 40.0%
GTGAAGACTACAGAGTAGTT+GGG + chr6.2:214672-214691 MS.gene053097:intron 40.0%
GTGGTTTCTCTTATGATGGT+GGG + chr6.2:213982-214001 MS.gene053097:CDS 40.0%
GTGTCAAATGAATTAGGAGC+AGG + chr6.2:216397-216416 MS.gene053097:CDS 40.0%
GTTTCCCAATATCTCTAGTG+TGG + chr6.2:215264-215283 MS.gene053097:CDS 40.0%
TACCAAAACATGAGTCCAGA+AGG - chr6.2:215680-215699 None:intergenic 40.0%
TTCAGCAAAAGACATGGCAA+TGG - chr6.2:214043-214062 None:intergenic 40.0%
TTTGCATGTGATTGCATTGC+AGG + chr6.2:217481-217500 MS.gene053097:intron 40.0%
! AGGAGGTGGATTTCAAGAAA+TGG + chr6.2:217187-217206 MS.gene053097:CDS 40.0%
! AGGTGGATTTCAAGAAATGG+GGG + chr6.2:217190-217209 MS.gene053097:CDS 40.0%
! ATTCGCTATTTCCAGACTCA+GGG + chr6.2:215407-215426 MS.gene053097:CDS 40.0%
! ATTGGAGCTGCTTTAGCTAT+TGG + chr6.2:215524-215543 MS.gene053097:CDS 40.0%
! GAGGTGGATTTCAAGAAATG+GGG + chr6.2:217189-217208 MS.gene053097:CDS 40.0%
! GATCTAACGGCTCAAGTTTT+AGG + chr6.2:214844-214863 MS.gene053097:intron 40.0%
! GGAGCATTAGAAACACTATG+TGG + chr6.2:215164-215183 MS.gene053097:CDS 40.0%
! GGAGGTGGATTTCAAGAAAT+GGG + chr6.2:217188-217207 MS.gene053097:CDS 40.0%
! TTCCTTCTGGACTCATGTTT+TGG + chr6.2:215675-215694 MS.gene053097:CDS 40.0%
! TTCGATCATAGGAGCTCTTT+TGG + chr6.2:216009-216028 MS.gene053097:intron 40.0%
!! GAGGTTTCAAGTTGAGGATT+AGG - chr6.2:215827-215846 None:intergenic 40.0%
AAACCTCGGTTCTTTCTGTC+TGG + chr6.2:215840-215859 MS.gene053097:CDS 45.0%
AGGGAATCCAAAGACAGCTA+AGG + chr6.2:216417-216436 MS.gene053097:CDS 45.0%
AGTGATGACCATGGAAGTGA+TGG + chr6.2:213859-213878 MS.gene053097:CDS 45.0%
AGTGCATAGCCAAATAGAGC+GGG - chr6.2:215374-215393 None:intergenic 45.0%
ATGCAATTGGAGCTTCTGCA+AGG + chr6.2:216270-216289 MS.gene053097:CDS 45.0%
ATTGGAGCTTCTGCAAGGTT+TGG + chr6.2:216275-216294 MS.gene053097:intron 45.0%
CAACTCTTCCATCACTTCCA+TGG - chr6.2:213870-213889 None:intergenic 45.0%
CATTGCAGGCAACAAAAGCA+AGG + chr6.2:217495-217514 MS.gene053097:intron 45.0%
GAAAGATCATTCCCTGAGTC+TGG - chr6.2:215421-215440 None:intergenic 45.0%
GCACCCTATATTATGTGGCA+TGG + chr6.2:216141-216160 MS.gene053097:intron 45.0%
GCAGAAGCTCCAATTGCATA+TGG - chr6.2:216269-216288 None:intergenic 45.0%
GGGAATCCAAAGACAGCTAA+GGG + chr6.2:216418-216437 MS.gene053097:CDS 45.0%
GGTGAAGACTACAGAGTAGT+TGG + chr6.2:214671-214690 MS.gene053097:intron 45.0%
GTAGGATCTTGTCACACAAC+AGG - chr6.2:214749-214768 None:intergenic 45.0%
GTTTGCATTGCAGTTGGGAA+TGG + chr6.2:215139-215158 MS.gene053097:intron 45.0%
TACCAACTGAGCTAAGCTCA+CGG - chr6.2:217024-217043 None:intergenic 45.0%
TACCTCATTCCCGCTCTATT+TGG + chr6.2:215362-215381 MS.gene053097:CDS 45.0%
TCAGGGAATGATCTTTCCCA+TGG + chr6.2:215424-215443 MS.gene053097:CDS 45.0%
TGCATATTATATGCAGGGGC+CGG + chr6.2:217051-217070 MS.gene053097:intron 45.0%
TTAGGGATGTCAGTGACTGT+TGG + chr6.2:216897-216916 MS.gene053097:intron 45.0%
TTGTGGATGGGAACTCTATC+AGG + chr6.2:217299-217318 MS.gene053097:CDS 45.0%
! AGCTTCTGCAAGGTTTGGTT+TGG + chr6.2:216280-216299 MS.gene053097:intron 45.0%
! GATTCGCTATTTCCAGACTC+AGG + chr6.2:215406-215425 MS.gene053097:CDS 45.0%
! GCAGAGGAGTATGGAAAACT+TGG + chr6.2:215200-215219 MS.gene053097:CDS 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + chr6.2:217024-217043 MS.gene053097:intron 45.0%
!! AGAACCGAGGTTTCAAGTTG+AGG - chr6.2:215833-215852 None:intergenic 45.0%
!! CTTATGATGGTGGGACATCT+TGG + chr6.2:213991-214010 MS.gene053097:CDS 45.0%
ACAGCTCCCTTAGCTGTCTT+TGG - chr6.2:216427-216446 None:intergenic 50.0%
ACCAACTGAGCTAAGCTCAC+GGG - chr6.2:217023-217042 None:intergenic 50.0%
AGCCAAATAGAGCGGGAATG+AGG - chr6.2:215367-215386 None:intergenic 50.0%
AGCTAAGGGAGCTGTTAGAG+TGG + chr6.2:216432-216451 MS.gene053097:CDS 50.0%
ATGGGGGCTTATGTGAACCT+TGG + chr6.2:217206-217225 MS.gene053097:CDS 50.0%
CAATGTCGTGTCTGGTGTCT+GGG + chr6.2:215066-215085 MS.gene053097:intron 50.0%
CATATTATATGCAGGGGCCG+GGG + chr6.2:217053-217072 MS.gene053097:intron 50.0%
GAGTTTCATGGCAGCTCCAA+TGG + chr6.2:213927-213946 MS.gene053097:CDS 50.0%
GCATATTATATGCAGGGGCC+GGG + chr6.2:217052-217071 MS.gene053097:intron 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG + chr6.2:217023-217042 MS.gene053097:intron 50.0%
TCAATGTCGTGTCTGGTGTC+TGG + chr6.2:215065-215084 MS.gene053097:intron 50.0%
TCACCAGACAGAAAGAACCG+AGG - chr6.2:215846-215865 None:intergenic 50.0%
TCCATACTCCTCTGCACCAA+AGG - chr6.2:215195-215214 None:intergenic 50.0%
! ACCTTTGGTGCAGAGGAGTA+TGG + chr6.2:215191-215210 MS.gene053097:CDS 50.0%
! TGGACAAACCTTTGGTGCAG+AGG + chr6.2:215184-215203 MS.gene053097:CDS 50.0%
ACATCCCACTCTGAGCCACT+AGG + chr6.2:217088-217107 MS.gene053097:intron 55.0%
AGTAGCCTAGTGGCTCAGAG+TGG - chr6.2:217096-217115 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+GGG - chr6.2:217022-217041 None:intergenic 55.0%
GCATTGCAGTTGGGAATGGC+TGG + chr6.2:215143-215162 MS.gene053097:intron 55.0%
GTAGCCTAGTGGCTCAGAGT+GGG - chr6.2:217095-217114 None:intergenic 55.0%
TGAACTGCAGGGGTTGCTAG+AGG + chr6.2:217167-217186 MS.gene053097:intron 55.0%
ACTGCAGGGGTTGCTAGAGG+AGG + chr6.2:217170-217189 MS.gene053097:intron 60.0%
CCCCGTGAGCTTAGCTCAGT+TGG + chr6.2:217019-217038 MS.gene053097:intron 60.0%
GTGGCTCAGAGTGGGATGTC+CGG - chr6.2:217087-217106 None:intergenic 60.0%
TGGCTCAGAGTGGGATGTCC+GGG - chr6.2:217086-217105 None:intergenic 60.0%
GATGTCCGGGGTTCGAACCC+CGG - chr6.2:217073-217092 None:intergenic 65.0%
GCAGGGGTTGCTAGAGGAGG+TGG + chr6.2:217173-217192 MS.gene053097:intron 65.0%
GGCTCAGAGTGGGATGTCCG+GGG - chr6.2:217085-217104 None:intergenic 65.0%
AGGGGCCGGGGTTCGAACCC+CGG + chr6.2:217065-217084 MS.gene053097:intron 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 213823 217571 213823 ID=MS.gene053097
chr6.2 mRNA 213823 217571 213823 ID=MS.gene053097.t1;Parent=MS.gene053097
chr6.2 exon 213823 214062 213823 ID=MS.gene053097.t1.exon1;Parent=MS.gene053097.t1
chr6.2 CDS 213823 214062 213823 ID=cds.MS.gene053097.t1;Parent=MS.gene053097.t1
chr6.2 exon 215152 215696 215152 ID=MS.gene053097.t1.exon2;Parent=MS.gene053097.t1
chr6.2 CDS 215152 215696 215152 ID=cds.MS.gene053097.t1;Parent=MS.gene053097.t1
chr6.2 exon 215775 215861 215775 ID=MS.gene053097.t1.exon3;Parent=MS.gene053097.t1
chr6.2 CDS 215775 215861 215775 ID=cds.MS.gene053097.t1;Parent=MS.gene053097.t1
chr6.2 exon 216235 216291 216235 ID=MS.gene053097.t1.exon4;Parent=MS.gene053097.t1
chr6.2 CDS 216235 216291 216235 ID=cds.MS.gene053097.t1;Parent=MS.gene053097.t1
chr6.2 exon 216390 216628 216390 ID=MS.gene053097.t1.exon5;Parent=MS.gene053097.t1
chr6.2 CDS 216390 216628 216390 ID=cds.MS.gene053097.t1;Parent=MS.gene053097.t1
chr6.2 exon 217177 217382 217177 ID=MS.gene053097.t1.exon6;Parent=MS.gene053097.t1
chr6.2 CDS 217177 217382 217177 ID=cds.MS.gene053097.t1;Parent=MS.gene053097.t1
chr6.2 exon 217503 217571 217503 ID=MS.gene053097.t1.exon7;Parent=MS.gene053097.t1
chr6.2 CDS 217503 217571 217503 ID=cds.MS.gene053097.t1;Parent=MS.gene053097.t1
Gene Sequence

>MS.gene053097

ATGAGTAAGGAGGTGACAACACCATTGCTAAGAAAGAGTGATGACCATGGAAGTGATGGAAGAGTTGAGATTGAGAATACATTCATTCAAGAGTTGAAGAAAGTGAGTTTCATGGCAGCTCCAATGGTAGCTGTAACTGTTTCACAATATCTTCTTCAAGTGGTTTCTCTTATGATGGTGGGACATCTTGGTATACTTGTTTCATTCTCTGGTGTTTCCATTGCCATGTCTTTTGCTGAAGTTACTGGCTTTAGTGTCCTTGTATGTTCTTCTTCTCTCTCTCCTTCCTTTTCTTGTTTTTCTTGGATTCAACTATCAATCCAACTAGTTTGCATCTCTAAGCTTTGTATTTTGTTTTTATTTGTTTCAAACCTATTTTTCTTCTTCTGATTTTTGTATGGATTAGGAACATAATCCAAAATGTTTGATTAGTACTTTGTAACAGTAATAAACAGGATCTCATGTGAAAGGTATATAATGGACCACCATTTAATTGATTTTATAGCCAATCAGTTCATATAAAAGTATGCAATCCTAACAAGATCAAAGAGTGACGACTATCTATTTGATTCTTGTACAGTAGAAAAATAGCATAGTATCCTATTGAATATAATGAGTGAAGATACAACTTGATCATTCTCAATTTTCTTGTGGGTGAATTCAATCTCTAACAATAAATAAACACAAATTAATATGACATTTTCATATTCGAGACAAATTAGTCCATAAATCGTTGTATTAGAGGGACTAATTTGTCTCCAAAATGAAAATATGAGGACTAATTTGGATATATTTTTTGTCAAGTAGTACTTAATTCTCCTAGAAAATTATGAGGGTTGTGTATTGATGGTGAAGACTACAGAGTAGTTGGGTATAGTTGGTTGACAACACTTATTTTCTCATTGATGATGAATTGATGATGTCCTGTTGTGTGACAAGATCCTACACACAGAGTTGAAATAAGGATTTGTATACCATTCATTTGGAGAATCCTAAATTTTCTGTATTTGTACATCTCAACGATCTAACGGCTCAAGTTTTAGGGAATGAATTATCTCCACCATTCTTAATGTCCCTTTTGTATATTCCACTTTTTCCTTTATTTTTTTCAGGGTCCACATTTCACAGTCATAATGTCACTTGACATAGTTCTTTTTCCTCGTCTAAATATTTATACCTTATTTAATGAATTTAATCTAACTACTAATTTTTTTTCTTCAAATTGTGACCGATGTTTTAGTATCAATGTCGTGTCTGGTGTCTGGGTCAGTGCTTCATAGTATAAATATAATGGTTATGCTCATTATGTGTTTCTTGTTTGCATTGCAGTTGGGAATGGCTGGAGCATTAGAAACACTATGTGGACAAACCTTTGGTGCAGAGGAGTATGGAAAACTTGGAAACTACACTTGCTGTGCAATATTAACCCTAACTGTAGTTTGTTTCCCAATATCTCTAGTGTGGATATTCACAGATAAAATACTAATGTTTTTTAGTCAAGACGCTGGAATGTCTCATGTAGCTCGCGAGTATTGCATATACCTCATTCCCGCTCTATTTGGCTATGCACTTCTTCAAGCGTTGATTCGCTATTTCCAGACTCAGGGAATGATCTTTCCCATGGTTTTTAGCTCAGTATCTGCTCTATTTTTGCACATTCCTATTTGTTGGATTCTGGTTTTTAAGTTGGGATTAGGACACATTGGAGCTGCTTTAGCTATTGGAATTTCTTATTGGTTGAATGTGATATGGCTTTGGGTTTATATTAAGTACTCTCCATCATGTCAAAAAACCAAGATTGTGTTTTCTACTCATGCTTTACATAACCTACCAGAGTTCTGCAAATATGCTATTCCTTCTGGACTCATGTTTTGGTAAATTATAAAACAATGCTGCTTCATTTCATTTTAATTTTCTTCTACTAATTTCAATTTTCATACAATATTGTGTAGTTTTGAATGGTGGTCCTTTGAGATTCTTATATTAATTGCGGGGCTTTTACCTAATCCTCAACTTGAAACCTCGGTTCTTTCTGTCTGGTGAGTCTAATCAACTTCATTTCAATTTCAATTTATAATGTATTGTCCAAATGGTGAACTATGCATTTAGTCTCTAAAGTTGTAGATTGCGCCAATATAATCTTTGAAGTCGATAGTATTTTAAACGGATATTTTAGGTTGAAAATCTTCGATCATAGGAGCTCTTTTGGATTCATCAAGTTAGTTCTTAAAAATGTTTTGCAGGGACTGACGTGATCAAGAATTTTCGAACATGATAATTATTTTGAAATTTTGTTCATTTTATATATCAAGTTCATAGCACCCTATATTATGTGGCATGGATTAATGTGACTGAAATTTTTCAACTGTACTGTGATCTTCTTTCTAACTTAATCTAAATTTACTCTTGCAGCTTGAATACTACCTCATTGCACTTCTTTATTCCATATGCAATTGGAGCTTCTGCAAGGTTTGGTTTGGTCCATACATATGTGACATATCATGTGATATTGCAAGATCTTCTGTTTTTGATCTCTCCCATGTCATGATGTTTGTTTGTTTTCGCAGTACTCGTGTGTCAAATGAATTAGGAGCAGGGAATCCAAAGACAGCTAAGGGAGCTGTTAGAGTGGTTGTGATTATTGGAATTGCTGAGGCAATTATTGTCAGCACTTTCTTCCTTTGTTTTAGAAATATTTTAGGATATGCTTATAGCAATGATGAACAAGTTGTGAATTACATTGCGGATATGGTTCCTCTTCTTTGTGTTTCTGTTAGTGCTGATAGTCTAATTGGAGCTCTTTCAGGTCAGTTTTATGTTATTAATAATTCTTTTTGCTTAATTATTAGACTAATCTCTCAATTAGTGATCTCTCAAGTATTACATTTTCTTAGTTTCTAAGCTATATGAAAACTGCTCTAATATATAATCATTGGGATATATAAAAATCTTTCATGTTAATCTCTAAAGTTGTGTGAATATAACAATAGCGATTAATGAGACAAATTTTCATTTACTTTCTGAGGGATTTAGATTTTGTTGCAGTTAGAAATCAACAGTACACATTCACGTTTTTAGGGATGTCAGTGACTGTTGGATCGAGATCAGACGATCTAGATTTTAATGTATATTTTGGACCGTCTAATCTCGATTCATCGACCACAAATATCTTCATTCTAAAAACATTATAGTTAATCCCCGTGAGCTTAGCTCAGTTGGTAGGGATATTGCATATTATATGCAGGGGCCGGGGTTCGAACCCCGGACATCCCACTCTGAGCCACTAGGCTACTTGACAAAAAAAAAAAACATTATAGTTACATTTGTTACTTATATAATGAATGTGAACTGCAGGGGTTGCTAGAGGAGGTGGATTTCAAGAAATGGGGGCTTATGTGAACCTTGGAGCTTACTATATTGTGGGAATTCCTATTGGTTTGTTATTAGGTTTTCATCTAAAATTAAATGCAAAGGGATTGTGGATGGGAACTCTATCAGGATCTGTTTTAAATGTCATTATTCTATCTATTGTAACTGCATTAACTGATTGGCAGAAAGAGGTTTGTTTTCTTATACAAAAAAATACAAACTTTTTCCAACTTTTGTACCTTTTTCTTTTCAACCACCTTTGTTTTTTTTTACAACAACTGAGGCAACTTTTGCATGTGATTGCATTGCAGGCAACAAAAGCAAGGGAAAGAATAATTGACCAGTCAATAAAAACTAACAACACATTGGTGGTGGCATGA

Protein sequence

>MS.gene053097.t1

MSKEVTTPLLRKSDDHGSDGRVEIENTFIQELKKVSFMAAPMVAVTVSQYLLQVVSLMMVGHLGILVSFSGVSIAMSFAELGMAGALETLCGQTFGAEEYGKLGNYTCCAILTLTVVCFPISLVWIFTDKILMFFSQDAGMSHVAREYCIYLIPALFGYALLQALIRYFQTQGMIFPMVFSSVSALFLHIPICWILVFKLGLGHIGAALAIGISYWLNVIWLWVYIKYSPSCQKTKIVFSTHALHNLPEFCKYAIPSGLMFCFEWWSFEILILIAGLLPNPQLETSVLSVCLNTTSLHFFIPYAIGASASTRVSNELGAGNPKTAKGAVRVVVIIGIAEAIIVSTFFLCFRNILGYAYSNDEQVVNYIADMVPLLCVSVSADSLIGALSGVARGGGFQEMGAYVNLGAYYIVGIPIGLLLGFHLKLNAKGLWMGTLSGSVLNVIILSIVTALTDWQKEATKARERIIDQSIKTNNTLVVA