Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074419.t1 | XP_003601303.1 | 94.7 | 206 | 11 | 0 | 1 | 206 | 1 | 206 | 2.00E-92 | 348.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074419.t1 | Q9LZH5 | 39.5 | 200 | 102 | 6 | 3 | 195 | 2 | 189 | 2.3e-20 | 100.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074419.t1 | B7FFE5 | 94.7 | 206 | 11 | 0 | 1 | 206 | 1 | 206 | 1.4e-92 | 348.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049828 | MS.gene074419 | 0.845761 | 3.32E-59 | -1.69E-46 |
| MS.gene050581 | MS.gene074419 | 0.822664 | 2.10E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene074419 | 0.800891 | 1.16E-48 | -1.69E-46 |
| MS.gene055636 | MS.gene074419 | 0.80389 | 2.81E-49 | -1.69E-46 |
| MS.gene056611 | MS.gene074419 | 0.840843 | 6.81E-58 | -1.69E-46 |
| MS.gene058903 | MS.gene074419 | 0.836925 | 7.03E-57 | -1.69E-46 |
| MS.gene059974 | MS.gene074419 | 0.8063 | 8.80E-50 | -1.69E-46 |
| MS.gene060799 | MS.gene074419 | 0.815416 | 9.35E-52 | -1.69E-46 |
| MS.gene060801 | MS.gene074419 | 0.804802 | 1.81E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074419.t1 | MTR_3g079210 | 95.146 | 206 | 10 | 0 | 1 | 206 | 1 | 206 | 6.24e-129 | 361 |
| MS.gene074419.t1 | MTR_5g006950 | 39.200 | 125 | 73 | 2 | 46 | 170 | 24 | 145 | 2.80e-18 | 78.6 |
| MS.gene074419.t1 | MTR_1g103490 | 40.659 | 91 | 51 | 2 | 46 | 136 | 24 | 111 | 6.76e-16 | 72.0 |
| MS.gene074419.t1 | MTR_5g070360 | 34.328 | 134 | 78 | 3 | 42 | 175 | 28 | 151 | 2.76e-15 | 71.2 |
| MS.gene074419.t1 | MTR_2g008580 | 40.206 | 97 | 55 | 2 | 34 | 130 | 20 | 113 | 4.98e-15 | 70.9 |
| MS.gene074419.t1 | MTR_2g008560 | 38.182 | 110 | 55 | 4 | 57 | 166 | 39 | 135 | 8.80e-15 | 69.7 |
| MS.gene074419.t1 | MTR_1g103450 | 36.029 | 136 | 62 | 4 | 46 | 181 | 24 | 134 | 2.73e-13 | 65.1 |
| MS.gene074419.t1 | MTR_7g095230 | 36.000 | 125 | 73 | 5 | 47 | 169 | 28 | 147 | 8.18e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074419.t1 | AT3G43720 | 47.015 | 134 | 63 | 3 | 43 | 169 | 32 | 164 | 1.32e-28 | 106 |
| MS.gene074419.t1 | AT3G43720 | 46.324 | 136 | 63 | 3 | 43 | 169 | 32 | 166 | 7.84e-28 | 104 |
| MS.gene074419.t1 | AT2G27130 | 43.519 | 108 | 59 | 2 | 34 | 140 | 24 | 130 | 1.01e-23 | 93.2 |
| MS.gene074419.t1 | AT1G03103 | 35.443 | 158 | 85 | 5 | 49 | 204 | 24 | 166 | 4.23e-16 | 73.2 |
| MS.gene074419.t1 | AT3G22600 | 40.698 | 86 | 48 | 2 | 46 | 131 | 24 | 106 | 8.00e-16 | 72.4 |
| MS.gene074419.t1 | AT2G48130 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.17e-15 | 71.6 |
| MS.gene074419.t1 | AT2G48130 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.17e-15 | 71.6 |
| MS.gene074419.t1 | AT2G48130 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.17e-15 | 71.6 |
| MS.gene074419.t1 | AT2G48130 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.17e-15 | 71.6 |
| MS.gene074419.t1 | AT2G48130 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.17e-15 | 71.6 |
| MS.gene074419.t1 | AT2G48130 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.17e-15 | 71.6 |
| MS.gene074419.t1 | AT4G08670 | 34.356 | 163 | 94 | 6 | 42 | 197 | 40 | 196 | 6.51e-15 | 70.9 |
| MS.gene074419.t1 | AT2G13820 | 35.772 | 123 | 75 | 2 | 50 | 170 | 27 | 147 | 1.08e-14 | 69.3 |
| MS.gene074419.t1 | AT2G13820 | 35.772 | 123 | 75 | 2 | 50 | 170 | 39 | 159 | 1.27e-14 | 69.3 |
| MS.gene074419.t1 | AT5G64080 | 30.909 | 165 | 93 | 5 | 42 | 206 | 36 | 179 | 7.95e-14 | 67.4 |
| MS.gene074419.t1 | AT5G64080 | 33.077 | 130 | 77 | 4 | 42 | 165 | 36 | 161 | 8.71e-14 | 67.0 |
| MS.gene074419.t1 | AT4G14815 | 35.484 | 93 | 57 | 2 | 40 | 132 | 16 | 105 | 2.95e-13 | 65.1 |
| MS.gene074419.t1 | AT5G09370 | 34.188 | 117 | 69 | 3 | 50 | 163 | 28 | 139 | 3.59e-13 | 65.1 |
| MS.gene074419.t1 | AT2G13820 | 37.662 | 77 | 46 | 1 | 54 | 130 | 31 | 105 | 7.95e-13 | 63.2 |
| MS.gene074419.t1 | AT5G09370 | 35.714 | 98 | 58 | 2 | 50 | 147 | 28 | 120 | 2.60e-12 | 62.8 |
| MS.gene074419.t1 | AT5G09370 | 37.931 | 87 | 49 | 2 | 60 | 146 | 38 | 119 | 1.47e-11 | 60.1 |
Find 52 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCCTTCTGGAAGCAAAAT+TGG | 0.248172 | 3.4:-75388122 | MS.gene074419:CDS |
| GCAGGTGTTCTTAGCCCTTC+TGG | 0.257309 | 3.4:-75388134 | MS.gene074419:intron |
| AACAGCTTACACAAACAAAT+AGG | 0.265322 | 3.4:+75390501 | None:intergenic |
| GGCGCTAAAACCGCGGTTTC+CGG | 0.269928 | 3.4:+75390660 | None:intergenic |
| TTTGCATCACTCTCATTTCA+TGG | 0.285544 | 3.4:-75390723 | MS.gene074419:CDS |
| GGACTTAGGGCTGATCCTTT+TGG | 0.329469 | 3.4:+75388474 | None:intergenic |
| TGGAGTATCTGCTGCTGCTT+TGG | 0.352720 | 3.4:-75390697 | MS.gene074419:CDS |
| CCTCCTGTTAGTGCTTGTTC+AGG | 0.362697 | 3.4:-75390393 | MS.gene074419:intron |
| CTTAAGCTTCCAACTATTTG+TGG | 0.365023 | 3.4:-75390426 | MS.gene074419:CDS |
| ATTTGTTTGTGTAAGCTGTT+AGG | 0.384262 | 3.4:-75390498 | MS.gene074419:CDS |
| TCAACTTCATCTGATAGTTC+AGG | 0.394833 | 3.4:-75388450 | MS.gene074419:intron |
| GTCAGATTGTTTGACATTTG+TGG | 0.406541 | 3.4:-75390595 | MS.gene074419:CDS |
| GAGTTAGCAGGGTTGATTGA+TGG | 0.411939 | 3.4:-75390528 | MS.gene074419:CDS |
| AATGTAAAATCAGAAGAATA+TGG | 0.417381 | 3.4:+75388034 | None:intergenic |
| TCAGGACAACATCCTTTGTC+TGG | 0.420386 | 3.4:+75390549 | None:intergenic |
| TTACCTGAACAAGCACTAAC+AGG | 0.424650 | 3.4:+75390390 | None:intergenic |
| AGATGAAGTTGAAGGACTTA+GGG | 0.439279 | 3.4:+75388461 | None:intergenic |
| TGTTTGACATTTGTGGAAGA+TGG | 0.446855 | 3.4:-75390588 | MS.gene074419:CDS |
| GGTAATGCTGCTGATTCTAT+TGG | 0.462047 | 3.4:-75390474 | MS.gene074419:CDS |
| ACAGCTTACACAAACAAATA+GGG | 0.462564 | 3.4:+75390502 | None:intergenic |
| CAGATGAAGTTGAAGGACTT+AGG | 0.463432 | 3.4:+75388460 | None:intergenic |
| AAAACCGCGGTTTCCGGTGC+CGG | 0.471159 | 3.4:+75390666 | None:intergenic |
| GCGCCATCACCGGCAGATGA+TGG | 0.475243 | 3.4:-75390642 | MS.gene074419:CDS |
| GGCAGATGATGGATGCTTGA+TGG | 0.475901 | 3.4:-75390631 | MS.gene074419:CDS |
| GGATGTTGTCCTGAGTTAGC+AGG | 0.476788 | 3.4:-75390540 | MS.gene074419:CDS |
| TGCTGCTTTGGCTCAATCAC+CGG | 0.486295 | 3.4:-75390685 | MS.gene074419:CDS |
| GTTTGACATTTGTGGAAGAT+GGG | 0.488176 | 3.4:-75390587 | MS.gene074419:CDS |
| TCACTCTCATTTCATGGAGA+TGG | 0.490910 | 3.4:-75390717 | MS.gene074419:CDS |
| GTAGTAACACCACAAATAGT+TGG | 0.491016 | 3.4:+75390417 | None:intergenic |
| GAACTATCAGATGAAGTTGA+AGG | 0.493768 | 3.4:+75388453 | None:intergenic |
| CATCCATCATCTGCCGGTGA+TGG | 0.511093 | 3.4:+75390639 | None:intergenic |
| TTTGGCTCAATCACCGGCAC+CGG | 0.516118 | 3.4:-75390679 | MS.gene074419:CDS |
| GATATGGCAATGTCACCAAA+AGG | 0.530694 | 3.4:-75388489 | MS.gene074419:CDS |
| CCTTCTGGAAGCAAAATTGG+AGG | 0.554339 | 3.4:-75388119 | MS.gene074419:CDS |
| TGCAGAGGCTTGAATGCTTG+AGG | 0.572865 | 3.4:+75388094 | None:intergenic |
| TCAATCAACCCTGCTAACTC+AGG | 0.575923 | 3.4:+75390531 | None:intergenic |
| TCCACTCAGTGATGGAGGCA+AGG | 0.577085 | 3.4:+75388660 | None:intergenic |
| CGGTGATGGCGCTAAAACCG+CGG | 0.578610 | 3.4:+75390653 | None:intergenic |
| TGGAGACAGAGACAGTGGAC+AGG | 0.579721 | 3.4:+75388054 | None:intergenic |
| ATAGCATCTCCACTCAGTGA+TGG | 0.584097 | 3.4:+75388652 | None:intergenic |
| ATCAAGCATCCATCATCTGC+CGG | 0.595406 | 3.4:+75390633 | None:intergenic |
| GATGTTGTCCTGAGTTAGCA+GGG | 0.597137 | 3.4:-75390539 | MS.gene074419:CDS |
| TGCAAAGAGTAAAGAAACAA+TGG | 0.599464 | 3.4:+75390740 | None:intergenic |
| GAATATGGAGACAGAGACAG+TGG | 0.605345 | 3.4:+75388049 | None:intergenic |
| GCATCTCCACTCAGTGATGG+AGG | 0.609350 | 3.4:+75388655 | None:intergenic |
| GGAGACAGAGACAGTGGACA+GGG | 0.621999 | 3.4:+75388055 | None:intergenic |
| AGTGATGGAGGCAAGGACAC+AGG | 0.629179 | 3.4:+75388667 | None:intergenic |
| TGTTTGTGTAAGCTGTTAGG+TGG | 0.635667 | 3.4:-75390495 | MS.gene074419:CDS |
| TCCTTGCCTCCATCACTGAG+TGG | 0.643834 | 3.4:-75388661 | MS.gene074419:CDS |
| ATCACCGGCACCGGAAACCG+CGG | 0.645420 | 3.4:-75390670 | MS.gene074419:CDS |
| AAGTTGACAAAACCAGACAA+AGG | 0.698102 | 3.4:-75390561 | MS.gene074419:CDS |
| CCTGAACAAGCACTAACAGG+AGG | 0.707608 | 3.4:+75390393 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr3.4:75388543-75388562 | MS.gene074419:intron | 0.0% |
| !! | TTAAAATAATGTTAAAACAA+AGG | + | chr3.4:75389383-75389402 | None:intergenic | 10.0% |
| !!! | GTTTTTTATTTTTTTTTTGA+AGG | - | chr3.4:75390511-75390530 | MS.gene074419:CDS | 10.0% |
| !!! | TGTTCAAATTTTAAAATATT+TGG | - | chr3.4:75388478-75388497 | MS.gene074419:CDS | 10.0% |
| !! | AAAAGAAAATAAAAAAAGAG+TGG | + | chr3.4:75389944-75389963 | None:intergenic | 15.0% |
| !! | AAATTATCCTTAATAACTAT+TGG | + | chr3.4:75388951-75388970 | None:intergenic | 15.0% |
| !! | AACAACAATAAATTAACTTA+TGG | + | chr3.4:75390199-75390218 | None:intergenic | 15.0% |
| !! | AATAGTTATTAAGGATAATT+TGG | - | chr3.4:75388950-75388969 | MS.gene074419:intron | 15.0% |
| !! | ACAATTATTAAATTCAAAGA+AGG | + | chr3.4:75389558-75389577 | None:intergenic | 15.0% |
| !! | ATATAAAAGATGCTATAATT+TGG | - | chr3.4:75388583-75388602 | MS.gene074419:intron | 15.0% |
| !! | ATATGAATTATTCAAAAAGT+TGG | + | chr3.4:75389618-75389637 | None:intergenic | 15.0% |
| !! | GATAAAAATAATTGACAAAA+TGG | + | chr3.4:75389077-75389096 | None:intergenic | 15.0% |
| !! | TAATGATCATAAATATCAAT+CGG | - | chr3.4:75390471-75390490 | MS.gene074419:CDS | 15.0% |
| !! | TATGTAAATTTACATGAATT+CGG | - | chr3.4:75390030-75390049 | MS.gene074419:intron | 15.0% |
| !! | TTATATATTACCAATGATTA+TGG | - | chr3.4:75389271-75389290 | MS.gene074419:intron | 15.0% |
| !! | TTGATAAAATAATGAAGATA+TGG | - | chr3.4:75390303-75390322 | MS.gene074419:intron | 15.0% |
| !!! | ATTTTTAAGTTTTGTTTGAT+AGG | + | chr3.4:75389222-75389241 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr3.4:75388824-75388843 | None:intergenic | 15.0% |
| !!! | GTGTTACAATTATTTATTTT+AGG | + | chr3.4:75389889-75389908 | None:intergenic | 15.0% |
| !!! | TACCAAAAAAAACATATTTT+GGG | + | chr3.4:75389099-75389118 | None:intergenic | 15.0% |
| !! | AAACTAACCAATAGTTATTA+AGG | - | chr3.4:75388941-75388960 | MS.gene074419:intron | 20.0% |
| !! | AATCCTTAAAAAAAAACTTG+AGG | + | chr3.4:75388756-75388775 | None:intergenic | 20.0% |
| !! | ACATTATAATAACTGAATTG+CGG | - | chr3.4:75388724-75388743 | MS.gene074419:intron | 20.0% |
| !! | ATTATTAAATTCAAAGAAGG+CGG | + | chr3.4:75389555-75389574 | None:intergenic | 20.0% |
| !! | GTTAAAATATACACCATAAT+TGG | - | chr3.4:75389434-75389453 | MS.gene074419:intron | 20.0% |
| !! | TAACTTAAGTAAAACTCATT+TGG | - | chr3.4:75390429-75390448 | MS.gene074419:CDS | 20.0% |
| !! | TAATATTGCAATTACTAGTA+AGG | - | chr3.4:75389807-75389826 | MS.gene074419:intron | 20.0% |
| !! | TTGATGGAAAATTCTATATT+TGG | + | chr3.4:75390610-75390629 | None:intergenic | 20.0% |
| !!! | ATCCCAAAATATGTTTTTTT+TGG | - | chr3.4:75389094-75389113 | MS.gene074419:intron | 20.0% |
| !!! | ATTTATTTGTTGAATGGTAA+AGG | + | chr3.4:75389846-75389865 | None:intergenic | 20.0% |
| !!! | CTACCAAAAAAAACATATTT+TGG | + | chr3.4:75389100-75389119 | None:intergenic | 20.0% |
| !!! | TTGCAAATTTATTTGTTGAA+TGG | + | chr3.4:75389852-75389871 | None:intergenic | 20.0% |
| !!! | TTTATTTGTTGAATGGTAAA+GGG | + | chr3.4:75389845-75389864 | None:intergenic | 20.0% |
| ! | AAATTTGCAATAAGTGATGT+AGG | - | chr3.4:75389862-75389881 | MS.gene074419:intron | 25.0% |
| ! | ACAAATTAAGGTGAACAATT+TGG | + | chr3.4:75389917-75389936 | None:intergenic | 25.0% |
| ! | ACTTTAGTACTATATGTTGA+TGG | + | chr3.4:75390626-75390645 | None:intergenic | 25.0% |
| ! | AGAAACAGTTATTATTGCAT+TGG | + | chr3.4:75388864-75388883 | None:intergenic | 25.0% |
| ! | ATAATTAACGATGAGTTAAG+AGG | - | chr3.4:75388663-75388682 | MS.gene074419:CDS | 25.0% |
| ! | CAATAATAGACCATAATCAT+TGG | + | chr3.4:75389284-75389303 | None:intergenic | 25.0% |
| ! | CATGCACATAAAAGTTAATA+AGG | + | chr3.4:75390558-75390577 | None:intergenic | 25.0% |
| ! | GAACAATTAATAACAGACAT+GGG | + | chr3.4:75389731-75389750 | None:intergenic | 25.0% |
| ! | GTTAATAAACTGACCAATTA+TGG | + | chr3.4:75389450-75389469 | None:intergenic | 25.0% |
| ! | TAACTTATGGAAAACTTACT+TGG | + | chr3.4:75390186-75390205 | None:intergenic | 25.0% |
| ! | TAATTAACGATGAGTTAAGA+GGG | - | chr3.4:75388664-75388683 | MS.gene074419:CDS | 25.0% |
| ! | TAATTGCAATATTATTGCTG+TGG | + | chr3.4:75389801-75389820 | None:intergenic | 25.0% |
| ! | TGAACAATTAATAACAGACA+TGG | + | chr3.4:75389732-75389751 | None:intergenic | 25.0% |
| !! | CTTATTAACTTTTATGTGCA+TGG | - | chr3.4:75390556-75390575 | MS.gene074419:CDS | 25.0% |
| !!! | AAACGACACTAATTTTGAAA+CGG | - | chr3.4:75389034-75389053 | MS.gene074419:intron | 25.0% |
| !!! | CATCCTCAAGTTTTTTTTTA+AGG | - | chr3.4:75388750-75388769 | MS.gene074419:intron | 25.0% |
| !!! | TGTATTTTTCAAAATTGTGC+AGG | - | chr3.4:75390656-75390675 | MS.gene074419:CDS | 25.0% |
| AAACAAAGGTAACACTATGT+TGG | + | chr3.4:75389369-75389388 | None:intergenic | 30.0% | |
| AACAGCTTACACAAACAAAT+AGG | + | chr3.4:75388310-75388329 | None:intergenic | 30.0% | |
| ACAGCTTACACAAACAAATA+GGG | + | chr3.4:75388309-75388328 | None:intergenic | 30.0% | |
| ATTGCAATTACTAGTAAGGT+AGG | - | chr3.4:75389811-75389830 | MS.gene074419:intron | 30.0% | |
| ATTTGTTTGTGTAAGCTGTT+AGG | - | chr3.4:75388310-75388329 | MS.gene074419:intron | 30.0% | |
| TATATATGTGTCACAGCTAT+TGG | - | chr3.4:75390114-75390133 | MS.gene074419:intron | 30.0% | |
| TCGTTAATTATCTCTCATCT+AGG | + | chr3.4:75388654-75388673 | None:intergenic | 30.0% | |
| TGCAAAGAGTAAAGAAACAA+TGG | + | chr3.4:75388071-75388090 | None:intergenic | 30.0% | |
| TTGCAATTACTAGTAAGGTA+GGG | - | chr3.4:75389812-75389831 | MS.gene074419:intron | 30.0% | |
| ! | GTAGTGTGCAAAGTATTAAT+TGG | + | chr3.4:75388902-75388921 | None:intergenic | 30.0% |
| ! | TGTGCAAAGTATTAATTGGA+GGG | + | chr3.4:75388898-75388917 | None:intergenic | 30.0% |
| AAAAATGAAAGTCAGTGCAG+AGG | + | chr3.4:75390732-75390751 | None:intergenic | 35.0% | |
| AAGAGTGGCATGACAAATTA+AGG | + | chr3.4:75389929-75389948 | None:intergenic | 35.0% | |
| AAGTTGACAAAACCAGACAA+AGG | - | chr3.4:75388247-75388266 | MS.gene074419:intron | 35.0% | |
| AATTCCATTACACATGGTGA+TGG | + | chr3.4:75389499-75389518 | None:intergenic | 35.0% | |
| AGATGAAGTTGAAGGACTTA+GGG | + | chr3.4:75390350-75390369 | None:intergenic | 35.0% | |
| CTTAAGCTTCCAACTATTTG+TGG | - | chr3.4:75388382-75388401 | MS.gene074419:intron | 35.0% | |
| CTTCTTAGGTTTAGGTATGT+TGG | + | chr3.4:75389333-75389352 | None:intergenic | 35.0% | |
| GAAATTACCTTGATCATCTG+TGG | - | chr3.4:75390262-75390281 | MS.gene074419:intron | 35.0% | |
| GAACTATCAGATGAAGTTGA+AGG | + | chr3.4:75390358-75390377 | None:intergenic | 35.0% | |
| GTAACTTTGTCTCTCTTCTT+AGG | + | chr3.4:75389347-75389366 | None:intergenic | 35.0% | |
| GTAGTAACACCACAAATAGT+TGG | + | chr3.4:75388394-75388413 | None:intergenic | 35.0% | |
| GTCAGATTGTTTGACATTTG+TGG | - | chr3.4:75388213-75388232 | MS.gene074419:intron | 35.0% | |
| GTTTGACATTTGTGGAAGAT+GGG | - | chr3.4:75388221-75388240 | MS.gene074419:intron | 35.0% | |
| TAAGTTACCACAGATGATCA+AGG | + | chr3.4:75390272-75390291 | None:intergenic | 35.0% | |
| TCAACTTCATCTGATAGTTC+AGG | - | chr3.4:75390358-75390377 | MS.gene074419:intron | 35.0% | |
| TGCAATATTATTGCTGTGGT+TGG | + | chr3.4:75389797-75389816 | None:intergenic | 35.0% | |
| TGTTTGACATTTGTGGAAGA+TGG | - | chr3.4:75388220-75388239 | MS.gene074419:intron | 35.0% | |
| TTGTCTCTCTTCTTAGGTTT+AGG | + | chr3.4:75389341-75389360 | None:intergenic | 35.0% | |
| TTTGCATCACTCTCATTTCA+TGG | - | chr3.4:75388085-75388104 | MS.gene074419:CDS | 35.0% | |
| ! | ATCACCATGTGTAATGGAAT+TGG | - | chr3.4:75389498-75389517 | MS.gene074419:intron | 35.0% |
| ! | GTGTGCAAAGTATTAATTGG+AGG | + | chr3.4:75388899-75388918 | None:intergenic | 35.0% |
| ! | TAAGGTGAACAATTTGGAGT+TGG | + | chr3.4:75389911-75389930 | None:intergenic | 35.0% |
| ! | TGTGGTTGGCTAACTAAATA+TGG | + | chr3.4:75389783-75389802 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr3.4:75388798-75388817 | None:intergenic | 35.0% |
| !!! | GACACTAATTTTGAAACGGA+GGG | - | chr3.4:75389038-75389057 | MS.gene074419:intron | 35.0% |
| CAGATGAAGTTGAAGGACTT+AGG | + | chr3.4:75390351-75390370 | None:intergenic | 40.0% | |
| CTAGCCAATTCCATTACACA+TGG | + | chr3.4:75389505-75389524 | None:intergenic | 40.0% | |
| GATATGGCAATGTCACCAAA+AGG | - | chr3.4:75390319-75390338 | MS.gene074419:intron | 40.0% | |
| TCACTCTCATTTCATGGAGA+TGG | - | chr3.4:75388091-75388110 | MS.gene074419:CDS | 40.0% | |
| TGTTTGTGTAAGCTGTTAGG+TGG | - | chr3.4:75388313-75388332 | MS.gene074419:intron | 40.0% | |
| TTACCTGAACAAGCACTAAC+AGG | + | chr3.4:75388421-75388440 | None:intergenic | 40.0% | |
| ! | CTCCAATTTTGCTTCCAGAA+GGG | + | chr3.4:75390691-75390710 | None:intergenic | 40.0% |
| ! | GCTAACTAAATATGGTGGAG+AGG | + | chr3.4:75389775-75389794 | None:intergenic | 40.0% |
| ! | GGTTGGCTAACTAAATATGG+TGG | + | chr3.4:75389780-75389799 | None:intergenic | 40.0% |
| !! | GGTAATGCTGCTGATTCTAT+TGG | - | chr3.4:75388334-75388353 | MS.gene074419:intron | 40.0% |
| !!! | CGACACTAATTTTGAAACGG+AGG | - | chr3.4:75389037-75389056 | MS.gene074419:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+TGG | + | chr3.4:75388794-75388813 | None:intergenic | 40.0% |
| ATAGCATCTCCACTCAGTGA+TGG | + | chr3.4:75390159-75390178 | None:intergenic | 45.0% | |
| ATCAAGCATCCATCATCTGC+CGG | + | chr3.4:75388178-75388197 | None:intergenic | 45.0% | |
| CAGTCCATCACCATGTGTAA+TGG | - | chr3.4:75389492-75389511 | MS.gene074419:intron | 45.0% | |
| GAAGGCGGTATCAACAAAGA+AGG | + | chr3.4:75389540-75389559 | None:intergenic | 45.0% | |
| GAATATGGAGACAGAGACAG+TGG | + | chr3.4:75390762-75390781 | None:intergenic | 45.0% | |
| GATGTTGTCCTGAGTTAGCA+GGG | - | chr3.4:75388269-75388288 | MS.gene074419:intron | 45.0% | |
| TCAATCAACCCTGCTAACTC+AGG | + | chr3.4:75388280-75388299 | None:intergenic | 45.0% | |
| TCAGGACAACATCCTTTGTC+TGG | + | chr3.4:75388262-75388281 | None:intergenic | 45.0% | |
| ! | AGCCCTTCTGGAAGCAAAAT+TGG | - | chr3.4:75390686-75390705 | MS.gene074419:CDS | 45.0% |
| ! | CCTCCAATTTTGCTTCCAGA+AGG | + | chr3.4:75390692-75390711 | None:intergenic | 45.0% |
| ! | CCTTCTGGAAGCAAAATTGG+AGG | - | chr3.4:75390689-75390708 | MS.gene074419:CDS | 45.0% |
| ! | GAGTTAGCAGGGTTGATTGA+TGG | - | chr3.4:75388280-75388299 | MS.gene074419:intron | 45.0% |
| !! | ACATGGTGATGGACTGACAT+TGG | + | chr3.4:75389488-75389507 | None:intergenic | 45.0% |
| !! | AAAACTTAAAAATAATAATT+TGG | - | chr3.4:75389229-75389248 | MS.gene074419:intron | 5.0% |
| CCTCCTGTTAGTGCTTGTTC+AGG | - | chr3.4:75388415-75388434 | MS.gene074419:intron | 50.0% | |
| CCTGAACAAGCACTAACAGG+AGG | + | chr3.4:75388418-75388437 | None:intergenic | 50.0% | |
| GGATGTTGTCCTGAGTTAGC+AGG | - | chr3.4:75388268-75388287 | MS.gene074419:intron | 50.0% | |
| TGCAGAGGCTTGAATGCTTG+AGG | + | chr3.4:75390717-75390736 | None:intergenic | 50.0% | |
| ! | GGACTTAGGGCTGATCCTTT+TGG | + | chr3.4:75390337-75390356 | None:intergenic | 50.0% |
| ! | TGGAGTATCTGCTGCTGCTT+TGG | - | chr3.4:75388111-75388130 | MS.gene074419:CDS | 50.0% |
| !! | GGCAGATGATGGATGCTTGA+TGG | - | chr3.4:75388177-75388196 | MS.gene074419:intron | 50.0% |
| !! | TGCTGCTTTGGCTCAATCAC+CGG | - | chr3.4:75388123-75388142 | MS.gene074419:CDS | 50.0% |
| CATCCATCATCTGCCGGTGA+TGG | + | chr3.4:75388172-75388191 | None:intergenic | 55.0% | |
| GCAGGTGTTCTTAGCCCTTC+TGG | - | chr3.4:75390674-75390693 | MS.gene074419:CDS | 55.0% | |
| GCATCTCCACTCAGTGATGG+AGG | + | chr3.4:75390156-75390175 | None:intergenic | 55.0% | |
| GGAGACAGAGACAGTGGACA+GGG | + | chr3.4:75390756-75390775 | None:intergenic | 55.0% | |
| TCCTTGCCTCCATCACTGAG+TGG | - | chr3.4:75390147-75390166 | MS.gene074419:intron | 55.0% | |
| TGGAGACAGAGACAGTGGAC+AGG | + | chr3.4:75390757-75390776 | None:intergenic | 55.0% | |
| ! | AGTGATGGAGGCAAGGACAC+AGG | + | chr3.4:75390144-75390163 | None:intergenic | 55.0% |
| ! | TCCACTCAGTGATGGAGGCA+AGG | + | chr3.4:75390151-75390170 | None:intergenic | 55.0% |
| ! | TTTGGCTCAATCACCGGCAC+CGG | - | chr3.4:75388129-75388148 | MS.gene074419:CDS | 55.0% |
| AAAACCGCGGTTTCCGGTGC+CGG | + | chr3.4:75388145-75388164 | None:intergenic | 60.0% | |
| GGCGCTAAAACCGCGGTTTC+CGG | + | chr3.4:75388151-75388170 | None:intergenic | 60.0% | |
| ! | CGGTGATGGCGCTAAAACCG+CGG | + | chr3.4:75388158-75388177 | None:intergenic | 60.0% |
| !! | CGCGGTTTTAGCGCCATCAC+CGG | - | chr3.4:75388156-75388175 | MS.gene074419:intron | 60.0% |
| GCGCCATCACCGGCAGATGA+TGG | - | chr3.4:75388166-75388185 | MS.gene074419:intron | 65.0% | |
| ! | ATCACCGGCACCGGAAACCG+CGG | - | chr3.4:75388138-75388157 | MS.gene074419:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 75388043 | 75390787 | 75388043 | ID=MS.gene074419 |
| chr3.4 | mRNA | 75388043 | 75390787 | 75388043 | ID=MS.gene074419.t1;Parent=MS.gene074419 |
| chr3.4 | exon | 75390394 | 75390787 | 75390394 | ID=MS.gene074419.t1.exon1;Parent=MS.gene074419.t1 |
| chr3.4 | CDS | 75390394 | 75390787 | 75390394 | ID=cds.MS.gene074419.t1;Parent=MS.gene074419.t1 |
| chr3.4 | exon | 75388644 | 75388700 | 75388644 | ID=MS.gene074419.t1.exon2;Parent=MS.gene074419.t1 |
| chr3.4 | CDS | 75388644 | 75388700 | 75388644 | ID=cds.MS.gene074419.t1;Parent=MS.gene074419.t1 |
| chr3.4 | exon | 75388451 | 75388510 | 75388451 | ID=MS.gene074419.t1.exon3;Parent=MS.gene074419.t1 |
| chr3.4 | CDS | 75388451 | 75388510 | 75388451 | ID=cds.MS.gene074419.t1;Parent=MS.gene074419.t1 |
| chr3.4 | exon | 75388043 | 75388152 | 75388043 | ID=MS.gene074419.t1.exon4;Parent=MS.gene074419.t1 |
| chr3.4 | CDS | 75388043 | 75388152 | 75388043 | ID=cds.MS.gene074419.t1;Parent=MS.gene074419.t1 |
| Gene Sequence |
| Protein sequence |
