AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055636


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055636.t1 MTR_4g065007 99.283 279 2 0 1 279 279 557 0.0 545
MS.gene055636.t1 MTR_2g009220 47.143 280 145 2 2 279 289 567 1.02e-82 259
MS.gene055636.t1 MTR_4g081600 61.134 247 61 6 53 279 409 640 5.50e-78 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055636.t1 AT5G12860 84.229 279 44 0 1 279 279 557 4.49e-170 482
MS.gene055636.t1 AT5G12860 84.173 278 44 0 1 278 279 556 5.83e-169 479
MS.gene055636.t1 AT5G64290 46.429 280 147 2 2 279 285 563 5.29e-82 257
MS.gene055636.t1 AT5G64280 45.357 280 150 2 2 279 271 549 5.47e-75 238

Find 104 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGGAGGCCTTACTCATTA+TGG 0.207768 4.1:+35721556 MS.gene055636:CDS
GTCATTCCTCTCCAACCTTA+TGG 0.214853 4.1:+35721537 MS.gene055636:CDS
TAGGGAGAAGTTGGAGAAAA+TGG 0.227943 4.1:+35719563 MS.gene055636:CDS
GCAACTATCTTTCGGTATTC+TGG 0.238296 4.1:+35721387 MS.gene055636:CDS
CAGGTGGGACTTTGGGTGTT+TGG 0.241180 4.1:+35720466 MS.gene055636:intron
GCCGTAACTGCTGCCATTCT+TGG 0.244211 4.1:+35720508 MS.gene055636:CDS
GGCTTGGACTCGGGTCTATT+TGG 0.247406 4.1:+35721677 MS.gene055636:CDS
GACCATTGGGTGGGTGGATT+GGG 0.256949 4.1:+35719431 MS.gene055636:CDS
CTTGCCAAATGGTGGGGTTA+TGG 0.288623 4.1:+35721622 MS.gene055636:CDS
AGACCATTGGGTGGGTGGAT+TGG 0.308188 4.1:+35719430 MS.gene055636:CDS
TGGGAGGCCTTACTCATTAT+GGG 0.316934 4.1:+35721557 MS.gene055636:CDS
TTTGTCTGTTGCTACTGCTC+TGG 0.321769 4.1:+35721483 MS.gene055636:CDS
GGGTTTGGTTTCGTTGGTTT+TGG 0.322223 4.1:+35719473 MS.gene055636:CDS
TCATTCCTCTCCAACCTTAT+GGG 0.332451 4.1:+35721538 MS.gene055636:CDS
AGCTGCTATTGTGCCGGGTT+TGG 0.337074 4.1:+35719458 MS.gene055636:CDS
ACACAGTTTGTTGGTGGATT+GGG 0.337833 4.1:+35721355 MS.gene055636:intron
GGCCTTACTCATTATGGGAT+TGG 0.355340 4.1:+35721562 MS.gene055636:CDS
TACACAGTTTGTTGGTGGAT+TGG 0.359432 4.1:+35721354 MS.gene055636:intron
GCCAGTGGAGCTGCTCATAT+TGG 0.359630 4.1:+35721442 MS.gene055636:CDS
GCCGGGTACTTGAACAAATA+TGG 0.386249 4.1:+35720634 MS.gene055636:CDS
GCCTTACTCATTATGGGATT+GGG 0.387958 4.1:+35721563 MS.gene055636:CDS
TTAGCTGTACTCCTCATCTC+AGG 0.388506 4.1:+35720532 MS.gene055636:CDS
CTCTCATGGCAACTATCTTT+CGG 0.393083 4.1:+35721379 MS.gene055636:CDS
TCCAAGAATGGCAGCAGTTA+CGG 0.399210 4.1:-35720509 None:intergenic
GGCTAAAGCTGCTATTGTGC+CGG 0.419300 4.1:+35719452 MS.gene055636:CDS
AAGCCATTGGCTTGTGGTAA+AGG 0.420303 4.1:+35721704 MS.gene055636:CDS
CTGGGAACTCCACCATTCTT+CGG 0.421438 4.1:+35721502 MS.gene055636:CDS
GTGGGACTTTGGGTGTTTGG+AGG 0.424596 4.1:+35720469 MS.gene055636:CDS
GCTTAGCTGAGGGTGTTGCC+TGG 0.426980 4.1:+35720575 MS.gene055636:CDS
TGGGACTTTGGGTGTTTGGA+GGG 0.429501 4.1:+35720470 MS.gene055636:CDS
AGGGAGAAGTTGGAGAAAAT+GGG 0.431911 4.1:+35719564 MS.gene055636:CDS
GTATTGTTAACATTGTCATC+TGG 0.433054 4.1:+35721656 MS.gene055636:CDS
ATTCGATTGGTCAGACCATT+GGG 0.435183 4.1:+35719418 MS.gene055636:CDS
AATTCGATTGGTCAGACCAT+TGG 0.436063 4.1:+35719417 MS.gene055636:CDS
TTGTCTGTTGCTACTGCTCT+GGG 0.438404 4.1:+35721484 MS.gene055636:CDS
TTGTCATCTGGCTTGGACTC+GGG 0.439851 4.1:+35721668 MS.gene055636:CDS
ACTGTTATTACACAGTTTGT+TGG 0.442820 4.1:+35721346 MS.gene055636:intron
GTTAACATTGTCATCTGGCT+TGG 0.443988 4.1:+35721661 MS.gene055636:CDS
CTAGCAAGCTTAGGTGCATC+AGG 0.448400 4.1:-35719543 None:intergenic
ACAAATATGGTCTCATCTCT+TGG 0.449006 4.1:+35720647 MS.gene055636:CDS
GACCGCTACTCTGTTTCTTA+CGG 0.449963 4.1:+35719614 MS.gene055636:CDS
GCTGCCCTCATTGCAATGGC+CGG 0.451401 4.1:+35720616 MS.gene055636:CDS
ACCAATATGAGCAGCTCCAC+TGG 0.452807 4.1:-35721443 None:intergenic
ATTGTCATCTGGCTTGGACT+CGG 0.455077 4.1:+35721667 MS.gene055636:CDS
CTCCACTGGCAAAGAAGTAA+TGG 0.462263 4.1:-35721429 None:intergenic
CTGATGCACCTAAGCTTGCT+AGG 0.468054 4.1:+35719544 MS.gene055636:CDS
ACTCTTACTTTGAATTCGAT+TGG 0.469687 4.1:+35719405 MS.gene055636:CDS
TCCCATTACTTCTTTGCCAG+TGG 0.471089 4.1:+35721427 MS.gene055636:CDS
CTGCCCTCATTGCAATGGCC+GGG 0.473064 4.1:+35720617 MS.gene055636:CDS
AAAGCCATAACCCCACCATT+TGG 0.475376 4.1:-35721626 None:intergenic
TCCACTGGCAAAGAAGTAAT+GGG 0.480397 4.1:-35721428 None:intergenic
ACCCAATCCCATAATGAGTA+AGG 0.489058 4.1:-35721564 None:intergenic
TCTATTTGGTGGAAAGCCAT+TGG 0.490613 4.1:+35721691 MS.gene055636:CDS
TAAGCTTGCTAGGGAGAAGT+TGG 0.492929 4.1:+35719554 MS.gene055636:CDS
TTTGGCAAGTGGAACATAGT+TGG 0.494233 4.1:-35721608 None:intergenic
TGTGCCGGGTTTGGTTTCGT+TGG 0.495658 4.1:+35719467 MS.gene055636:CDS
CTTAGCTGAGGGTGTTGCCT+GGG 0.499437 4.1:+35720576 MS.gene055636:CDS
AAAACCAACGAAACCAAACC+CGG 0.499703 4.1:-35719471 None:intergenic
GTTATTACACAGTTTGTTGG+TGG 0.503396 4.1:+35721349 MS.gene055636:intron
AATGAGTAAGGCCTCCCATA+AGG 0.503838 4.1:-35721552 None:intergenic
AACACCATGGCTCCGAAGAA+TGG 0.506954 4.1:-35721514 None:intergenic
GCTAAAGCTGCTATTGTGCC+GGG 0.509486 4.1:+35719453 MS.gene055636:CDS
TTGGTGGATTGGGTCTCTCA+TGG 0.513027 4.1:+35721365 MS.gene055636:CDS
AGTAATGGGAGTAGAAGTAG+AGG 0.513935 4.1:-35721414 None:intergenic
TTGGACTCGGGTCTATTTGG+TGG 0.514343 4.1:+35721680 MS.gene055636:CDS
AAACCACGTGAGAGTATCCC+AGG 0.517350 4.1:-35720593 None:intergenic
AACTTCTCCCTAGCAAGCTT+AGG 0.518753 4.1:-35719552 None:intergenic
TCCACCATTCTTCGGAGCCA+TGG 0.524824 4.1:+35721510 MS.gene055636:CDS
TGGTCAGACCATTGGGTGGG+TGG 0.527814 4.1:+35719425 MS.gene055636:CDS
TAGCTGTACTCCTCATCTCA+GGG 0.532808 4.1:+35720533 MS.gene055636:CDS
TGTTCCACTTGCCAAATGGT+GGG 0.537877 4.1:+35721615 MS.gene055636:CDS
ACTATGTTCCACTTGCCAAA+TGG 0.539221 4.1:+35721611 MS.gene055636:CDS
ACCATATTTGTTCAAGTACC+CGG 0.544916 4.1:-35720635 None:intergenic
AGTAAGGCCTCCCATAAGGT+TGG 0.553168 4.1:-35721548 None:intergenic
GTACCCGGCCATTGCAATGA+GGG 0.555519 4.1:-35720620 None:intergenic
ACCATGGCTCCGAAGAATGG+TGG 0.558163 4.1:-35721511 None:intergenic
ATGTTCCACTTGCCAAATGG+TGG 0.562922 4.1:+35721614 MS.gene055636:CDS
GTTTGCTGCCCTCATTGCAA+TGG 0.568959 4.1:+35720612 MS.gene055636:CDS
TCATCTCAGGGGTTGTAACA+TGG 0.568969 4.1:+35720545 MS.gene055636:CDS
GAGTACAGCTAATCCAAGAA+TGG 0.571107 4.1:-35720521 None:intergenic
GGCCCTTTACCACAAGCCAA+TGG 0.574870 4.1:-35721707 None:intergenic
GTTCCACTTGCCAAATGGTG+GGG 0.575270 4.1:+35721616 MS.gene055636:CDS
TAACCCCACCATTTGGCAAG+TGG 0.583744 4.1:-35721619 None:intergenic
AGCCCAATCCACCCACCCAA+TGG 0.585241 4.1:-35719433 None:intergenic
AAAGTAAGAGTAGCACATAA+CGG 0.590850 4.1:-35719393 None:intergenic
GTTCAGTCAAACTGTAGTCA+AGG 0.591753 4.1:+35720669 MS.gene055636:CDS
TTCCTCTCCAACCTTATGGG+AGG 0.599715 4.1:+35721541 MS.gene055636:CDS
TGATGCACCTAAGCTTGCTA+GGG 0.602466 4.1:+35719545 MS.gene055636:CDS
GGCCTCCCATAAGGTTGGAG+AGG 0.603882 4.1:-35721543 None:intergenic
GATTGGTCAGACCATTGGGT+GGG 0.612664 4.1:+35719422 MS.gene055636:CDS
TAAATAATATGCAAAATCAA+CGG 0.616717 4.1:-35719498 None:intergenic
ATGGAAAGAGTGCTTAGCTG+AGG 0.620669 4.1:+35720564 MS.gene055636:CDS
AGTACCCGGCCATTGCAATG+AGG 0.629202 4.1:-35720621 None:intergenic
CGATTGGTCAGACCATTGGG+TGG 0.629726 4.1:+35719421 MS.gene055636:CDS
ATGTTACAACCCCTGAGATG+AGG 0.630520 4.1:-35720543 None:intergenic
TGGAAAGAGTGCTTAGCTGA+GGG 0.636445 4.1:+35720565 MS.gene055636:CDS
GGGAGAAGTTGGAGAAAATG+GGG 0.643102 4.1:+35719565 MS.gene055636:CDS
GGTGGAAAGCCATTGGCTTG+TGG 0.643800 4.1:+35721698 MS.gene055636:CDS
GGACTAGATTTCAACGTCGG+AGG 0.655352 4.1:-35719522 None:intergenic
AGCTGTACTCCTCATCTCAG+GGG 0.662859 4.1:+35720534 MS.gene055636:CDS
TCAGGACTAGATTTCAACGT+CGG 0.689446 4.1:-35719525 None:intergenic
TACCGTAAGAAACAGAGTAG+CGG 0.697217 4.1:-35719616 None:intergenic
TTGCCTGGGATACTCTCACG+TGG 0.701370 4.1:+35720590 MS.gene055636:CDS
GGAGAGGAATGACAACACCA+TGG 0.744875 4.1:-35721527 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTGTTTTCTAAATT+AGG + chr4.1:35720129-35720148 MS.gene055636:intron 10.0%
!! CAAAAAAAAACTAAATTCTA+AGG - chr4.1:35720415-35720434 None:intergenic 15.0%
!! TAAATAATATGCAAAATCAA+CGG - chr4.1:35719501-35719520 None:intergenic 15.0%
!! TTAGAAAACAAATTTAAAGA+CGG - chr4.1:35720126-35720145 None:intergenic 15.0%
!!! CTTAGAATTTAGTTTTTTTT+TGG + chr4.1:35720413-35720432 MS.gene055636:intron 15.0%
!! TAGAGTATAAACATGAAATT+GGG + chr4.1:35719683-35719702 MS.gene055636:intron 20.0%
!! TTTAATAAATATTACACTCG+AGG - chr4.1:35720719-35720738 None:intergenic 20.0%
!!! AGTTAACATTTGATTTCAAA+AGG - chr4.1:35719934-35719953 None:intergenic 20.0%
!!! ATTGACTTTTCTTAAAATTG+TGG - chr4.1:35719842-35719861 None:intergenic 20.0%
!!! TTGACTTTTCTTAAAATTGT+GGG - chr4.1:35719841-35719860 None:intergenic 20.0%
! GTAATATTGTATGGTTACTA+TGG - chr4.1:35721249-35721268 None:intergenic 25.0%
! GTAGAGTATAAACATGAAAT+TGG + chr4.1:35719682-35719701 MS.gene055636:intron 25.0%
! GTTAACTGTATATAGTAGAA+TGG + chr4.1:35719947-35719966 MS.gene055636:intron 25.0%
! TAATTACTCAAAAATGTAGC+AGG - chr4.1:35721275-35721294 None:intergenic 25.0%
! TAGAGTATAAGCATGAAATT+GGG + chr4.1:35719757-35719776 MS.gene055636:intron 25.0%
! TATTTATATGTGGATATGCT+TGG + chr4.1:35721113-35721132 MS.gene055636:intron 25.0%
! TCTAGTAAGTAATGATTGAT+CGG + chr4.1:35720955-35720974 MS.gene055636:intron 25.0%
! TGTTTCTCAAATGTTATGTT+GGG + chr4.1:35719973-35719992 MS.gene055636:intron 25.0%
! TTCTTTCATTGACATAATCA+AGG - chr4.1:35721320-35721339 None:intergenic 25.0%
!! ACCAGCTTTTTATGATTATT+TGG + chr4.1:35720922-35720941 MS.gene055636:intron 25.0%
!! CATTTGATTTCAAAAGGTTA+TGG - chr4.1:35719928-35719947 None:intergenic 25.0%
!! TTGTTTCTCAAATGTTATGT+TGG + chr4.1:35719972-35719991 MS.gene055636:intron 25.0%
!! TTTTCTTAAAATTGTGGGTT+AGG - chr4.1:35719836-35719855 None:intergenic 25.0%
AAAGTAAGAGTAGCACATAA+CGG - chr4.1:35719396-35719415 None:intergenic 30.0%
AATAAATAGCATCTCTTCAG+TGG - chr4.1:35721199-35721218 None:intergenic 30.0%
ACATATAAATACCAGAGGAA+GGG - chr4.1:35721104-35721123 None:intergenic 30.0%
ACTCTTACTTTGAATTCGAT+TGG + chr4.1:35719405-35719424 MS.gene055636:CDS 30.0%
ACTGTTATTACACAGTTTGT+TGG + chr4.1:35721346-35721365 MS.gene055636:intron 30.0%
AGTCAATCTATATGCAAAGT+TGG + chr4.1:35719855-35719874 MS.gene055636:intron 30.0%
GCCAAATAATCATAAAAAGC+TGG - chr4.1:35720926-35720945 None:intergenic 30.0%
GTAGAGTATAAGCATGAAAT+TGG + chr4.1:35719756-35719775 MS.gene055636:intron 30.0%
GTATTGTTAACATTGTCATC+TGG + chr4.1:35721656-35721675 MS.gene055636:CDS 30.0%
TATACCTTGTGTCTTGATTA+AGG + chr4.1:35720364-35720383 MS.gene055636:intron 30.0%
TATCCACATATAAATACCAG+AGG - chr4.1:35721109-35721128 None:intergenic 30.0%
TCCATATTTGCCAGAAATTT+CGG - chr4.1:35720234-35720253 None:intergenic 30.0%
TGAGTGAACTGTAAATCATT+AGG + chr4.1:35720078-35720097 MS.gene055636:intron 30.0%
TTTAAAAAAGATCCGCTACT+CGG - chr4.1:35720316-35720335 None:intergenic 30.0%
! ATTTTCTCATTAGTCGTCAT+AGG - chr4.1:35719591-35719610 None:intergenic 30.0%
! GGTAGATAACTTCACTATTT+TGG + chr4.1:35719778-35719797 MS.gene055636:intron 30.0%
!!! GATTAGTTTTGAAGACCAAT+AGG - chr4.1:35720166-35720185 None:intergenic 30.0%
!!! GTTTTAATTTTGTCCACTCA+AGG + chr4.1:35721135-35721154 MS.gene055636:intron 30.0%
AAAAGGTTATGGCACAAAAG+TGG - chr4.1:35719917-35719936 None:intergenic 35.0%
AACTGTAAATCATTAGGCCA+TGG + chr4.1:35720084-35720103 MS.gene055636:intron 35.0%
AATGCAACTACTACTAGACA+AGG - chr4.1:35720340-35720359 None:intergenic 35.0%
ACAAATATGGTCTCATCTCT+TGG + chr4.1:35720647-35720666 MS.gene055636:CDS 35.0%
ACCATATTTGTTCAAGTACC+CGG - chr4.1:35720638-35720657 None:intergenic 35.0%
CACATATAAATACCAGAGGA+AGG - chr4.1:35721105-35721124 None:intergenic 35.0%
CAGAAATTTCGGCAATATCA+AGG - chr4.1:35720223-35720242 None:intergenic 35.0%
CTTCCTCTGGTATTTATATG+TGG + chr4.1:35721103-35721122 MS.gene055636:intron 35.0%
CTTGATATTGCCGAAATTTC+TGG + chr4.1:35720221-35720240 MS.gene055636:intron 35.0%
TACTCAAAAATGTAGCAGGT+TGG - chr4.1:35721271-35721290 None:intergenic 35.0%
TATTTCAAAACATGCTCCAG+TGG - chr4.1:35720880-35720899 None:intergenic 35.0%
TCTCTTCAGTGGCAATTATT+AGG - chr4.1:35721188-35721207 None:intergenic 35.0%
TGGCAATTATTAGGACTCAT+AGG - chr4.1:35721179-35721198 None:intergenic 35.0%
TGGCATCATAAGTTTGTGTT+GGG - chr4.1:35719897-35719916 None:intergenic 35.0%
TTCACCTTAATCAAGACACA+AGG - chr4.1:35720371-35720390 None:intergenic 35.0%
!! AGCAGGTTGGTAATATTGTA+TGG - chr4.1:35721258-35721277 None:intergenic 35.0%
!! GTTATTACACAGTTTGTTGG+TGG + chr4.1:35721349-35721368 MS.gene055636:intron 35.0%
!!! GGTAGATAGCTTTGCTATTT+TGG + chr4.1:35719704-35719723 MS.gene055636:intron 35.0%
!!! TAGTTTTGAAGACCAATAGG+AGG - chr4.1:35720163-35720182 None:intergenic 35.0%
AAAACCAACGAAACCAAACC+CGG - chr4.1:35719474-35719493 None:intergenic 40.0%
ACCCAATCCCATAATGAGTA+AGG - chr4.1:35721567-35721586 None:intergenic 40.0%
ACTATGTTCCACTTGCCAAA+TGG + chr4.1:35721611-35721630 MS.gene055636:CDS 40.0%
AGCATCCAATTTGCATTGCT+GGG + chr4.1:35720017-35720036 MS.gene055636:intron 40.0%
AGGGAGAAGTTGGAGAAAAT+GGG + chr4.1:35719564-35719583 MS.gene055636:CDS 40.0%
ATGCTGATCAACTCAGAAGT+AGG - chr4.1:35721045-35721064 None:intergenic 40.0%
CACCTGGTAAAATTGAGTGA+CGG - chr4.1:35720452-35720471 None:intergenic 40.0%
CTCTCATGGCAACTATCTTT+CGG + chr4.1:35721379-35721398 MS.gene055636:CDS 40.0%
GAGTAACGAGTCATTAACCA+TGG - chr4.1:35720104-35720123 None:intergenic 40.0%
GAGTACAGCTAATCCAAGAA+TGG - chr4.1:35720524-35720543 None:intergenic 40.0%
GCAACTATCTTTCGGTATTC+TGG + chr4.1:35721387-35721406 MS.gene055636:CDS 40.0%
GCCTTACTCATTATGGGATT+GGG + chr4.1:35721563-35721582 MS.gene055636:CDS 40.0%
GGCATCATAAGTTTGTGTTG+GGG - chr4.1:35719896-35719915 None:intergenic 40.0%
GTGGCATCATAAGTTTGTGT+TGG - chr4.1:35719898-35719917 None:intergenic 40.0%
GTTAACATTGTCATCTGGCT+TGG + chr4.1:35721661-35721680 MS.gene055636:CDS 40.0%
GTTCAGTCAAACTGTAGTCA+AGG + chr4.1:35720669-35720688 MS.gene055636:CDS 40.0%
GTTGATCAGCATCTGTTTCA+TGG + chr4.1:35721053-35721072 MS.gene055636:intron 40.0%
TACCGTAAGAAACAGAGTAG+CGG - chr4.1:35719619-35719638 None:intergenic 40.0%
TAGGGAGAAGTTGGAGAAAA+TGG + chr4.1:35719563-35719582 MS.gene055636:CDS 40.0%
TATAAATACCAGAGGAAGGG+AGG - chr4.1:35721101-35721120 None:intergenic 40.0%
TCAGGACTAGATTTCAACGT+CGG - chr4.1:35719528-35719547 None:intergenic 40.0%
TCATTCCTCTCCAACCTTAT+GGG + chr4.1:35721538-35721557 MS.gene055636:CDS 40.0%
TCCACTGGCAAAGAAGTAAT+GGG - chr4.1:35721431-35721450 None:intergenic 40.0%
TGGTCATTAGACAGATGTTG+TGG + chr4.1:35720041-35720060 MS.gene055636:intron 40.0%
TGGTTACTATGGTATGCATG+TGG - chr4.1:35721238-35721257 None:intergenic 40.0%
TTGCCTTTCATCTGTTCTCT+GGG + chr4.1:35720782-35720801 MS.gene055636:intron 40.0%
TTTGCCTTTCATCTGTTCTC+TGG + chr4.1:35720781-35720800 MS.gene055636:intron 40.0%
TTTGGCAAGTGGAACATAGT+TGG - chr4.1:35721611-35721630 None:intergenic 40.0%
! AATTCGATTGGTCAGACCAT+TGG + chr4.1:35719417-35719436 MS.gene055636:CDS 40.0%
! AATTTTACCAGGTGGGACTT+TGG + chr4.1:35720458-35720477 MS.gene055636:intron 40.0%
! AGTAATGGGAGTAGAAGTAG+AGG - chr4.1:35721417-35721436 None:intergenic 40.0%
! ATCCGTCACTCAATTTTACC+AGG + chr4.1:35720447-35720466 MS.gene055636:intron 40.0%
! ATTCGATTGGTCAGACCATT+GGG + chr4.1:35719418-35719437 MS.gene055636:CDS 40.0%
! ATTTTACCAGGTGGGACTTT+GGG + chr4.1:35720459-35720478 MS.gene055636:intron 40.0%
! GTCACTCAATTTTACCAGGT+GGG + chr4.1:35720451-35720470 MS.gene055636:intron 40.0%
! TAGTTGGCACCGAAAAATAC+TGG - chr4.1:35721595-35721614 None:intergenic 40.0%
! TCTATTTGGTGGAAAGCCAT+TGG + chr4.1:35721691-35721710 MS.gene055636:CDS 40.0%
! TGGTAAAATTGAGTGACGGA+TGG - chr4.1:35720448-35720467 None:intergenic 40.0%
!! ACACAGTTTGTTGGTGGATT+GGG + chr4.1:35721355-35721374 MS.gene055636:intron 40.0%
!! ATCTGTTCTCTGGGGTAAAA+TGG + chr4.1:35720791-35720810 MS.gene055636:intron 40.0%
!! GCCGAAATTTCTGGCAAATA+TGG + chr4.1:35720230-35720249 MS.gene055636:intron 40.0%
!! TACACAGTTTGTTGGTGGAT+TGG + chr4.1:35721354-35721373 MS.gene055636:intron 40.0%
!!! GGAACTCTGCTTAGTTTTGA+AGG + chr4.1:35719799-35719818 MS.gene055636:intron 40.0%
AAAGCCATAACCCCACCATT+TGG - chr4.1:35721629-35721648 None:intergenic 45.0%
AAATCAAACCTCCCTTCCTC+TGG + chr4.1:35721090-35721109 MS.gene055636:intron 45.0%
AACTTCTCCCTAGCAAGCTT+AGG - chr4.1:35719555-35719574 None:intergenic 45.0%
AACTTTGACGTTCCGAGTAG+CGG + chr4.1:35720301-35720320 MS.gene055636:intron 45.0%
AATGAGTAAGGCCTCCCATA+AGG - chr4.1:35721555-35721574 None:intergenic 45.0%
ATCAGGCATCTTGGTTCATG+TGG + chr4.1:35721009-35721028 MS.gene055636:intron 45.0%
ATGGGAGGCCTTACTCATTA+TGG + chr4.1:35721556-35721575 MS.gene055636:CDS 45.0%
ATGTTACAACCCCTGAGATG+AGG - chr4.1:35720546-35720565 None:intergenic 45.0%
ATGTTCCACTTGCCAAATGG+TGG + chr4.1:35721614-35721633 MS.gene055636:CDS 45.0%
CTCCACTGGCAAAGAAGTAA+TGG - chr4.1:35721432-35721451 None:intergenic 45.0%
GAACTCATGATGACCTTGAG+TGG - chr4.1:35721151-35721170 None:intergenic 45.0%
GAGCATCCAATTTGCATTGC+TGG + chr4.1:35720016-35720035 MS.gene055636:intron 45.0%
GCCGGGTACTTGAACAAATA+TGG + chr4.1:35720634-35720653 MS.gene055636:CDS 45.0%
GGCCTTACTCATTATGGGAT+TGG + chr4.1:35721562-35721581 MS.gene055636:CDS 45.0%
GGGAGAAGTTGGAGAAAATG+GGG + chr4.1:35719565-35719584 MS.gene055636:CDS 45.0%
GTCATTCCTCTCCAACCTTA+TGG + chr4.1:35721537-35721556 MS.gene055636:CDS 45.0%
GTGTTCTCTTGGAACACATC+AGG + chr4.1:35720992-35721011 MS.gene055636:intron 45.0%
TAAGTTTGTGTTGGGGTGAG+TGG - chr4.1:35719889-35719908 None:intergenic 45.0%
TACCCCAGAGAACAGATGAA+AGG - chr4.1:35720788-35720807 None:intergenic 45.0%
TAGCTGTACTCCTCATCTCA+GGG + chr4.1:35720533-35720552 MS.gene055636:CDS 45.0%
TCAAAACATGCTCCAGTGGT+TGG - chr4.1:35720876-35720895 None:intergenic 45.0%
TCAGGCATCTTGGTTCATGT+GGG + chr4.1:35721010-35721029 MS.gene055636:intron 45.0%
TCATCTCAGGGGTTGTAACA+TGG + chr4.1:35720545-35720564 MS.gene055636:CDS 45.0%
TCCAAGAATGGCAGCAGTTA+CGG - chr4.1:35720512-35720531 None:intergenic 45.0%
TCCCATTACTTCTTTGCCAG+TGG + chr4.1:35721427-35721446 MS.gene055636:CDS 45.0%
TGCCTTTCATCTGTTCTCTG+GGG + chr4.1:35720783-35720802 MS.gene055636:intron 45.0%
TGGGAGGCCTTACTCATTAT+GGG + chr4.1:35721557-35721576 MS.gene055636:CDS 45.0%
TGTTCCACTTGCCAAATGGT+GGG + chr4.1:35721615-35721634 MS.gene055636:CDS 45.0%
TGTTTGACCAAACCAACCAC+TGG + chr4.1:35720861-35720880 MS.gene055636:intron 45.0%
TTAGCTGTACTCCTCATCTC+AGG + chr4.1:35720532-35720551 MS.gene055636:CDS 45.0%
TTGGAACACATCAGGCATCT+TGG + chr4.1:35721000-35721019 MS.gene055636:intron 45.0%
TTGTCTGTTGCTACTGCTCT+GGG + chr4.1:35721484-35721503 MS.gene055636:CDS 45.0%
TTTGTCTGTTGCTACTGCTC+TGG + chr4.1:35721483-35721502 MS.gene055636:CDS 45.0%
! CGTCACTCAATTTTACCAGG+TGG + chr4.1:35720450-35720469 MS.gene055636:intron 45.0%
! GACCGCTACTCTGTTTCTTA+CGG + chr4.1:35719614-35719633 MS.gene055636:CDS 45.0%
! GGGTCAGCTCCAGTATTTTT+CGG + chr4.1:35721583-35721602 MS.gene055636:CDS 45.0%
!! ATGGAAAGAGTGCTTAGCTG+AGG + chr4.1:35720564-35720583 MS.gene055636:CDS 45.0%
!! ATTGTCATCTGGCTTGGACT+CGG + chr4.1:35721667-35721686 MS.gene055636:CDS 45.0%
!! TAAGCTTGCTAGGGAGAAGT+TGG + chr4.1:35719554-35719573 MS.gene055636:CDS 45.0%
!! TGATGCACCTAAGCTTGCTA+GGG + chr4.1:35719545-35719564 MS.gene055636:CDS 45.0%
!! TGGAAAGAGTGCTTAGCTGA+GGG + chr4.1:35720565-35720584 MS.gene055636:CDS 45.0%
!!! GGGTTTGGTTTCGTTGGTTT+TGG + chr4.1:35719473-35719492 MS.gene055636:CDS 45.0%
!! ATTTATTTAATTGTAATAAT+AGG + chr4.1:35721212-35721231 MS.gene055636:intron 5.0%
AACACCATGGCTCCGAAGAA+TGG - chr4.1:35721517-35721536 None:intergenic 50.0%
ACCAATATGAGCAGCTCCAC+TGG - chr4.1:35721446-35721465 None:intergenic 50.0%
ACCAGCCCAGCAATGCAAAT+TGG - chr4.1:35720025-35720044 None:intergenic 50.0%
AGCTGTACTCCTCATCTCAG+GGG + chr4.1:35720534-35720553 MS.gene055636:CDS 50.0%
AGTAAGGCCTCCCATAAGGT+TGG - chr4.1:35721551-35721570 None:intergenic 50.0%
CGGTCTCAATGCAGTCATAG+GGG + chr4.1:35720271-35720290 MS.gene055636:intron 50.0%
CTAGCAAGCTTAGGTGCATC+AGG - chr4.1:35719546-35719565 None:intergenic 50.0%
CTGGGAACTCCACCATTCTT+CGG + chr4.1:35721502-35721521 MS.gene055636:CDS 50.0%
GCGGTCTCAATGCAGTCATA+GGG + chr4.1:35720270-35720289 MS.gene055636:intron 50.0%
GCTAAAGCTGCTATTGTGCC+GGG + chr4.1:35719453-35719472 MS.gene055636:CDS 50.0%
GCTTGTGCTGTGTGTTCTCT+TGG + chr4.1:35720981-35721000 MS.gene055636:intron 50.0%
GGACTAGATTTCAACGTCGG+AGG - chr4.1:35719525-35719544 None:intergenic 50.0%
GGAGAGGAATGACAACACCA+TGG - chr4.1:35721530-35721549 None:intergenic 50.0%
GGCAATATCAAGGATCGCGA+CGG - chr4.1:35720213-35720232 None:intergenic 50.0%
GGCTAAAGCTGCTATTGTGC+CGG + chr4.1:35719452-35719471 MS.gene055636:CDS 50.0%
GTTCCACTTGCCAAATGGTG+GGG + chr4.1:35721616-35721635 MS.gene055636:CDS 50.0%
TAACCCCACCATTTGGCAAG+TGG - chr4.1:35721622-35721641 None:intergenic 50.0%
TAGGCTGTGCATCCTCCTAT+TGG + chr4.1:35720148-35720167 MS.gene055636:intron 50.0%
TCCAATTTGCATTGCTGGGC+TGG + chr4.1:35720021-35720040 MS.gene055636:intron 50.0%
TGGGACTTTGGGTGTTTGGA+GGG + chr4.1:35720470-35720489 MS.gene055636:CDS 50.0%
TTCCTCTCCAACCTTATGGG+AGG + chr4.1:35721541-35721560 MS.gene055636:CDS 50.0%
TTGGACTCGGGTCTATTTGG+TGG + chr4.1:35721680-35721699 MS.gene055636:CDS 50.0%
! ACATGCTCCAGTGGTTGGTT+TGG - chr4.1:35720871-35720890 None:intergenic 50.0%
! CTGATGCACCTAAGCTTGCT+AGG + chr4.1:35719544-35719563 MS.gene055636:CDS 50.0%
! CTTGCCAAATGGTGGGGTTA+TGG + chr4.1:35721622-35721641 MS.gene055636:CDS 50.0%
! GATTGGTCAGACCATTGGGT+GGG + chr4.1:35719422-35719441 MS.gene055636:CDS 50.0%
! GTTTGCTGCCCTCATTGCAA+TGG + chr4.1:35720612-35720631 MS.gene055636:CDS 50.0%
!! AAACCACGTGAGAGTATCCC+AGG - chr4.1:35720596-35720615 None:intergenic 50.0%
!! TTGGTGGATTGGGTCTCTCA+TGG + chr4.1:35721365-35721384 MS.gene055636:CDS 50.0%
!! TTGTCATCTGGCTTGGACTC+GGG + chr4.1:35721668-35721687 MS.gene055636:CDS 50.0%
ACCATGGCTCCGAAGAATGG+TGG - chr4.1:35721514-35721533 None:intergenic 55.0%
AGACCATTGGGTGGGTGGAT+TGG + chr4.1:35719430-35719449 MS.gene055636:CDS 55.0%
AGCTGCTATTGTGCCGGGTT+TGG + chr4.1:35719458-35719477 MS.gene055636:CDS 55.0%
AGTACCCGGCCATTGCAATG+AGG - chr4.1:35720624-35720643 None:intergenic 55.0%
CAAACACCCAAAGTCCCACC+TGG - chr4.1:35720468-35720487 None:intergenic 55.0%
CAGGTGGGACTTTGGGTGTT+TGG + chr4.1:35720466-35720485 MS.gene055636:intron 55.0%
CGCGGTCTCAATGCAGTCAT+AGG + chr4.1:35720269-35720288 MS.gene055636:intron 55.0%
GCCAGTGGAGCTGCTCATAT+TGG + chr4.1:35721442-35721461 MS.gene055636:CDS 55.0%
GCCGTAACTGCTGCCATTCT+TGG + chr4.1:35720508-35720527 MS.gene055636:CDS 55.0%
GGATGATGCGATCACGATCG+CGG + chr4.1:35720251-35720270 MS.gene055636:intron 55.0%
GGCTTGGACTCGGGTCTATT+TGG + chr4.1:35721677-35721696 MS.gene055636:CDS 55.0%
GTACCCGGCCATTGCAATGA+GGG - chr4.1:35720623-35720642 None:intergenic 55.0%
GTGGGACTTTGGGTGTTTGG+AGG + chr4.1:35720469-35720488 MS.gene055636:CDS 55.0%
TCCACCATTCTTCGGAGCCA+TGG + chr4.1:35721510-35721529 MS.gene055636:CDS 55.0%
TTGCCTGGGATACTCTCACG+TGG + chr4.1:35720590-35720609 MS.gene055636:CDS 55.0%
! CGATTGGTCAGACCATTGGG+TGG + chr4.1:35719421-35719440 MS.gene055636:CDS 55.0%
! GACCATTGGGTGGGTGGATT+GGG + chr4.1:35719431-35719450 MS.gene055636:CDS 55.0%
! TGTGCCGGGTTTGGTTTCGT+TGG + chr4.1:35719467-35719486 MS.gene055636:CDS 55.0%
!! CTTAGCTGAGGGTGTTGCCT+GGG + chr4.1:35720576-35720595 MS.gene055636:CDS 55.0%
!! GGTGGAAAGCCATTGGCTTG+TGG + chr4.1:35721698-35721717 MS.gene055636:CDS 55.0%
AGCCCAATCCACCCACCCAA+TGG - chr4.1:35719436-35719455 None:intergenic 60.0%
CTGCCCTCATTGCAATGGCC+GGG + chr4.1:35720617-35720636 MS.gene055636:CDS 60.0%
GCTGCCCTCATTGCAATGGC+CGG + chr4.1:35720616-35720635 MS.gene055636:CDS 60.0%
GGCCTCCCATAAGGTTGGAG+AGG - chr4.1:35721546-35721565 None:intergenic 60.0%
TGGTCAGACCATTGGGTGGG+TGG + chr4.1:35719425-35719444 MS.gene055636:CDS 60.0%
!! GCTTAGCTGAGGGTGTTGCC+TGG + chr4.1:35720575-35720594 MS.gene055636:CDS 60.0%
GTGTTGGGGTGAGTGGCACG+AGG - chr4.1:35719882-35719901 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 35719381 35721723 35719381 ID=MS.gene055636
chr4.1 mRNA 35719381 35721723 35719381 ID=MS.gene055636.t1;Parent=MS.gene055636
chr4.1 exon 35719381 35719635 35719381 ID=MS.gene055636.t1.exon1;Parent=MS.gene055636.t1
chr4.1 CDS 35719381 35719635 35719381 ID=cds.MS.gene055636.t1;Parent=MS.gene055636.t1
chr4.1 exon 35720469 35720690 35720469 ID=MS.gene055636.t1.exon2;Parent=MS.gene055636.t1
chr4.1 CDS 35720469 35720690 35720469 ID=cds.MS.gene055636.t1;Parent=MS.gene055636.t1
chr4.1 exon 35721361 35721723 35721361 ID=MS.gene055636.t1.exon3;Parent=MS.gene055636.t1
chr4.1 CDS 35721361 35721723 35721361 ID=cds.MS.gene055636.t1;Parent=MS.gene055636.t1
Gene Sequence

>MS.gene055636

ATGGCTGCGAATCCGTTATGTGCTACTCTTACTTTGAATTCGATTGGTCAGACCATTGGGTGGGTGGATTGGGCTAAAGCTGCTATTGTGCCGGGTTTGGTTTCGTTGGTTTTGGTGCCGTTGATTTTGCATATTATTTATCCTCCGACGTTGAAATCTAGTCCTGATGCACCTAAGCTTGCTAGGGAGAAGTTGGAGAAAATGGGGCCTATGACGACTAATGAGAAAATTATGACCGCTACTCTGTTTCTTACGGTAATCAGTCTGCGCACTTTATCTGTCTAATATAATGTGTTTTGTTGTAGAGTATAAACATGAAATTGGGTAGATAGCTTTGCTATTTTGGAACTGTGTTTGTAGATGTTACATAGTTGTGTAGAGTATAAGCATGAAATTGGGTAGATAACTTCACTATTTTGGAACTCTGCTTAGTTTTGAAGGATTGAGTTAGACCTAACCCACAATTTTAAGAAAAGTCAATCTATATGCAAAGTTGGTCCTCGTGCCACTCACCCCAACACAAACTTATGATGCCACTTTTGTGCCATAACCTTTTGAAATCAAATGTTAACTGTATATAGTAGAATGGTTTTGTTTCTCAAATGTTATGTTGGGACTTTTATGCTTATTGAGTTGAGCATCCAATTTGCATTGCTGGGCTGGTCATTAGACAGATGTTGTGGTTTTGCTTTTTAGCTGAGTGAACTGTAAATCATTAGGCCATGGTTAATGACTCGTTACTCCGTCTTTAAATTTGTTTTCTAAATTAGGCTGTGCATCCTCCTATTGGTCTTCAAAACTAATCATTTAGTAGCAAGTTTTTAAATCTCCGTCGCGATCCTTGATATTGCCGAAATTTCTGGCAAATATGGATGATGCGATCACGATCGCGGTCTCAATGCAGTCATAGGGGCGTAAAAAACTTTGACGTTCCGAGTAGCGGATCTTTTTTAAAACCTTGTCTAGTAGTAGTTGCATTGATGTATACCTTGTGTCTTGATTAAGGTGAATACAGAGTAGTACTTTAAATGCCTTAGAATTTAGTTTTTTTTTGGTGACTTATTCCATCCGTCACTCAATTTTACCAGGTGGGACTTTGGGTGTTTGGAGGGCTTCTTAATATAGATGCCGTAACTGCTGCCATTCTTGGATTAGCTGTACTCCTCATCTCAGGGGTTGTAACATGGAAAGAGTGCTTAGCTGAGGGTGTTGCCTGGGATACTCTCACGTGGTTTGCTGCCCTCATTGCAATGGCCGGGTACTTGAACAAATATGGTCTCATCTCTTGGTTCAGTCAAACTGTAGTCAAGGTATATTTCATGTCTCATCTTTCTACCTCGAGTGTAATATTTATTAAACTTTACTTATGCTGCTTCTGATGATCGTTGATCTTCAGTTCTTTTGCCTTTCATCTGTTCTCTGGGGTAAAATGGTGAATGCATGATTTTTTGTTTAATTTATTCATACTATTTTTACTAGTTGTTTGACCAAACCAACCACTGGAGCATGTTTTGAAATACTCAGAAGCAAATAAGCTTTCAACCAGCTTTTTATGATTATTTGGCATACATGCATCTAGTAAGTAATGATTGATCGGCATGCTTGTGCTGTGTGTTCTCTTGGAACACATCAGGCATCTTGGTTCATGTGGGTGCTTTATTCCTACTTCTGAGTTGATCAGCATCTGTTTCATGGTCAAAGCATATACTAAATCAAACCTCCCTTCCTCTGGTATTTATATGTGGATATGCTTGGTTTTAATTTTGTCCACTCAAGGTCATCATGAGTTCTAAGTCCTATGAGTCCTAATAATTGCCACTGAAGAGATGCTATTTATTTAATTGTAATAATAGGCCACATGCATACCATAGTAACCATACAATATTACCAACCTGCTACATTTTTGAGTAATTATTGAAACAATTTTATTTATATACCTTGATTATGTCAATGAAAGAATTTGCTACTGTTATTACACAGTTTGTTGGTGGATTGGGTCTCTCATGGCAACTATCTTTCGGTATTCTGGTTCTCCTCTACTTCTACTCCCATTACTTCTTTGCCAGTGGAGCTGCTCATATTGGTGCTATGTTTACTGCATTTTTGTCTGTTGCTACTGCTCTGGGAACTCCACCATTCTTCGGAGCCATGGTGTTGTCATTCCTCTCCAACCTTATGGGAGGCCTTACTCATTATGGGATTGGGTCAGCTCCAGTATTTTTCGGTGCCAACTATGTTCCACTTGCCAAATGGTGGGGTTATGGCTTTGTTATTAGTATTGTTAACATTGTCATCTGGCTTGGACTCGGGTCTATTTGGTGGAAAGCCATTGGCTTGTGGTAA

Protein sequence

>MS.gene055636.t1

MAANPLCATLTLNSIGQTIGWVDWAKAAIVPGLVSLVLVPLILHIIYPPTLKSSPDAPKLAREKLEKMGPMTTNEKIMTATLFLTVGLWVFGGLLNIDAVTAAILGLAVLLISGVVTWKECLAEGVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVATALGTPPFFGAMVLSFLSNLMGGLTHYGIGSAPVFFGANYVPLAKWWGYGFVISIVNIVIWLGLGSIWWKAIGLW