Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060799.t1 | RHN63957.1 | 95.8 | 191 | 6 | 1 | 1 | 189 | 1 | 191 | 3.40E-99 | 370.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060799.t1 | Q8GW46 | 75.8 | 165 | 34 | 2 | 8 | 172 | 5 | 163 | 8.1e-65 | 248.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060799.t1 | A0A396IM32 | 95.8 | 191 | 6 | 1 | 1 | 189 | 1 | 191 | 2.5e-99 | 370.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene060799.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049828 | MS.gene060799 | 0.800723 | 1.26E-48 | -1.69E-46 |
| MS.gene049907 | MS.gene060799 | 0.809132 | 2.20E-50 | -1.69E-46 |
| MS.gene050581 | MS.gene060799 | 0.83825 | 3.21E-57 | -1.69E-46 |
| MS.gene053813 | MS.gene060799 | 0.801119 | 1.05E-48 | -1.69E-46 |
| MS.gene056611 | MS.gene060799 | 0.826469 | 2.67E-54 | -1.69E-46 |
| MS.gene057537 | MS.gene060799 | 0.803705 | 3.07E-49 | -1.69E-46 |
| MS.gene058459 | MS.gene060799 | 0.835948 | 1.25E-56 | -1.69E-46 |
| MS.gene058903 | MS.gene060799 | 0.848661 | 5.32E-60 | -1.69E-46 |
| MS.gene059974 | MS.gene060799 | 0.835707 | 1.43E-56 | -1.69E-46 |
| MS.gene060005 | MS.gene060799 | 0.84605 | 2.77E-59 | -1.69E-46 |
| MS.gene060799 | MS.gene060800 | 0.953281 | 3.87E-111 | -1.69E-46 |
| MS.gene060799 | MS.gene060801 | 0.983867 | 6.27E-159 | -1.69E-46 |
| MS.gene060799 | MS.gene063103 | 0.807927 | 3.98E-50 | -1.69E-46 |
| MS.gene060799 | MS.gene063268 | 0.809872 | 1.53E-50 | -1.69E-46 |
| MS.gene060799 | MS.gene069891 | 0.803179 | 3.94E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene074368 | 0.808575 | 2.90E-50 | -1.69E-46 |
| MS.gene060799 | MS.gene074419 | 0.815416 | 9.35E-52 | -1.69E-46 |
| MS.gene060799 | MS.gene07761 | 0.837706 | 4.44E-57 | -1.69E-46 |
| MS.gene060799 | MS.gene08557 | 0.805713 | 1.17E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene08691 | 0.800856 | 1.18E-48 | -1.69E-46 |
| MS.gene060799 | MS.gene08753 | 0.811737 | 6.03E-51 | -1.69E-46 |
| MS.gene060799 | MS.gene08811 | 0.825319 | 5.00E-54 | -1.69E-46 |
| MS.gene060799 | MS.gene08966 | 0.823573 | 1.29E-53 | -1.69E-46 |
| MS.gene060799 | MS.gene09357 | 0.81721 | 3.71E-52 | -1.69E-46 |
| MS.gene060799 | MS.gene21253 | 0.802093 | 6.61E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene22224 | 0.805446 | 1.33E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene22859 | 0.83214 | 1.12E-55 | -1.69E-46 |
| MS.gene060799 | MS.gene25886 | 0.808383 | 3.18E-50 | -1.69E-46 |
| MS.gene060799 | MS.gene26193 | 0.805619 | 1.22E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene29785 | 0.821895 | 3.17E-53 | -1.69E-46 |
| MS.gene060799 | MS.gene31854 | -0.813712 | 2.23E-51 | -1.69E-46 |
| MS.gene060799 | MS.gene32736 | 0.822951 | 1.80E-53 | -1.69E-46 |
| MS.gene060799 | MS.gene33652 | -0.826243 | 3.02E-54 | -1.69E-46 |
| MS.gene060799 | MS.gene35480 | 0.801217 | 9.99E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene36377 | 0.802861 | 4.59E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene37305 | 0.803722 | 3.04E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene41950 | 0.841802 | 3.81E-58 | -1.69E-46 |
| MS.gene060799 | MS.gene42660 | 0.803907 | 2.79E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene43374 | -0.805549 | 1.27E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene45237 | 0.813044 | 3.12E-51 | -1.69E-46 |
| MS.gene060799 | MS.gene48285 | 0.839014 | 2.04E-57 | -1.69E-46 |
| MS.gene060799 | MS.gene48287 | 0.834135 | 3.57E-56 | -1.69E-46 |
| MS.gene060799 | MS.gene48401 | 0.84423 | 8.60E-59 | -1.69E-46 |
| MS.gene060799 | MS.gene53276 | 0.837542 | 4.89E-57 | -1.69E-46 |
| MS.gene060799 | MS.gene59947 | 0.966232 | 1.20E-125 | -1.69E-46 |
| MS.gene060799 | MS.gene62396 | 0.968768 | 3.78E-129 | -1.69E-46 |
| MS.gene060799 | MS.gene66848 | 0.802913 | 4.48E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene68751 | 0.807351 | 5.27E-50 | -1.69E-46 |
| MS.gene060799 | MS.gene69718 | 0.8102 | 1.30E-50 | -1.69E-46 |
| MS.gene060799 | MS.gene70562 | 0.815336 | 9.74E-52 | -1.69E-46 |
| MS.gene060799 | MS.gene70615 | 0.802384 | 5.76E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene75616 | 0.871999 | 4.45E-67 | -1.69E-46 |
| MS.gene060799 | MS.gene76557 | 0.84908 | 4.07E-60 | -1.69E-46 |
| MS.gene060799 | MS.gene79806 | 0.860601 | 1.84E-63 | -1.69E-46 |
| MS.gene060799 | MS.gene85171 | 0.864103 | 1.55E-64 | -1.69E-46 |
| MS.gene060799 | MS.gene97592 | 0.81874 | 1.67E-52 | -1.69E-46 |
| MS.gene060799 | MS.gene98287 | 0.807957 | 3.92E-50 | -1.69E-46 |
| MS.gene060799 | MS.gene98532 | 0.80971 | 1.65E-50 | -1.69E-46 |
| MS.gene060799 | MS.gene99049 | -0.80886 | 2.52E-50 | -1.69E-46 |
| MS.gene060799 | MS.gene99876 | 0.81201 | 5.26E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060799.t1 | MTR_4g114730 | 95.288 | 191 | 7 | 1 | 1 | 189 | 1 | 191 | 5.41e-136 | 378 |
| MS.gene060799.t1 | MTR_2g087740 | 56.667 | 180 | 67 | 4 | 5 | 173 | 2 | 181 | 4.45e-60 | 186 |
| MS.gene060799.t1 | MTR_4g025900 | 53.403 | 191 | 63 | 4 | 14 | 184 | 25 | 209 | 2.64e-54 | 172 |
| MS.gene060799.t1 | MTR_4g050300 | 56.000 | 175 | 61 | 6 | 5 | 173 | 2 | 166 | 1.27e-52 | 166 |
| MS.gene060799.t1 | MTR_4g101660 | 54.971 | 171 | 59 | 4 | 8 | 163 | 14 | 181 | 2.31e-50 | 162 |
| MS.gene060799.t1 | MTR_5g034030 | 49.686 | 159 | 58 | 4 | 12 | 156 | 12 | 162 | 5.58e-45 | 148 |
| MS.gene060799.t1 | MTR_5g046230 | 41.875 | 160 | 72 | 3 | 5 | 155 | 8 | 155 | 1.10e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060799.t1 | AT2G26580 | 75.301 | 166 | 35 | 2 | 7 | 172 | 4 | 163 | 6.88e-88 | 255 |
| MS.gene060799.t1 | AT2G26580 | 75.301 | 166 | 35 | 2 | 7 | 172 | 4 | 163 | 6.88e-88 | 255 |
| MS.gene060799.t1 | AT1G08465 | 53.631 | 179 | 60 | 5 | 5 | 171 | 2 | 169 | 5.25e-56 | 175 |
| MS.gene060799.t1 | AT2G45190 | 54.802 | 177 | 63 | 6 | 4 | 163 | 14 | 190 | 2.23e-54 | 172 |
| MS.gene060799.t1 | AT4G00180 | 50.811 | 185 | 57 | 4 | 12 | 165 | 23 | 204 | 1.41e-47 | 155 |
| MS.gene060799.t1 | AT4G00180 | 48.864 | 176 | 56 | 4 | 21 | 165 | 1 | 173 | 2.75e-39 | 133 |
| MS.gene060799.t1 | AT1G23420 | 47.205 | 161 | 71 | 3 | 13 | 159 | 20 | 180 | 1.01e-38 | 132 |
| MS.gene060799.t1 | AT1G23420 | 47.205 | 161 | 71 | 3 | 13 | 159 | 51 | 211 | 2.96e-38 | 132 |
| MS.gene060799.t1 | AT2G45190 | 92.982 | 57 | 4 | 0 | 107 | 163 | 70 | 126 | 4.29e-34 | 119 |
| MS.gene060799.t1 | AT1G69180 | 42.069 | 145 | 78 | 2 | 11 | 155 | 18 | 156 | 3.92e-32 | 114 |
Find 38 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATCCTATCGTTGCATT+TGG | 0.296610 | 8.2:+13689172 | None:intergenic |
| GCTTCTCTGTGACTGATATC+AGG | 0.363234 | 8.2:+13688656 | None:intergenic |
| GCAATCCTATCGTTGCATTT+GGG | 0.399881 | 8.2:+13689173 | None:intergenic |
| ACTGTCATGGCAAGATGTTC+AGG | 0.423195 | 8.2:-13690237 | MS.gene060799:intron |
| GTGGTCACTGCACAAATCTA+TGG | 0.424333 | 8.2:-13690289 | MS.gene060799:CDS |
| AGGTACACGTTGCCTCTTCT+CGG | 0.458670 | 8.2:+13688845 | None:intergenic |
| ATCAGCCCAAAATGAATATG+AGG | 0.476928 | 8.2:+13688515 | None:intergenic |
| CACCCATGTTACTGAGGAAA+GGG | 0.483814 | 8.2:-13689132 | MS.gene060799:CDS |
| GAGCAACAATCAAGCTAAGA+TGG | 0.499438 | 8.2:-13688486 | MS.gene060799:CDS |
| TCCTCAGTAACATGGGTGGT+TGG | 0.501150 | 8.2:+13689137 | None:intergenic |
| ACTGCATGAATCCAGAGTAT+AGG | 0.501971 | 8.2:-13689214 | MS.gene060799:CDS |
| GGTACACGTTGCCTCTTCTC+GGG | 0.503039 | 8.2:+13688846 | None:intergenic |
| CAACCCTTTCCTCAGTAACA+TGG | 0.504380 | 8.2:+13689129 | None:intergenic |
| TGAGAAGCGTTTGATGTCTA+CGG | 0.515736 | 8.2:-13688355 | MS.gene060799:CDS |
| ATGTAGCAGAGTTGTTCAGC+AGG | 0.519727 | 8.2:+13691393 | None:intergenic |
| CCTATCGTTGCATTTGGGAG+TGG | 0.533061 | 8.2:+13689178 | None:intergenic |
| ACAATATTGCAAAAGTTGCA+AGG | 0.540036 | 8.2:+13691369 | None:intergenic |
| AATTTCCAGCTCCCGAGAAG+AGG | 0.540719 | 8.2:-13688857 | MS.gene060799:intron |
| AAATCTATGGTCTGTAAACA+TGG | 0.552321 | 8.2:-13690276 | MS.gene060799:CDS |
| CCGCGTTTCAGTCACTGTCA+TGG | 0.556178 | 8.2:-13690250 | MS.gene060799:CDS |
| TCTGGATTCATGCAGTGGCT+AGG | 0.562771 | 8.2:+13689221 | None:intergenic |
| CTAGTTCGAATCCTATACTC+TGG | 0.567724 | 8.2:+13689203 | None:intergenic |
| GGAAGAGATTCAGAGGATCA+AGG | 0.576711 | 8.2:-13688687 | MS.gene060799:CDS |
| CAATATTGCAAAAGTTGCAA+GGG | 0.579397 | 8.2:+13691370 | None:intergenic |
| CCACCCATGTTACTGAGGAA+AGG | 0.581614 | 8.2:-13689133 | MS.gene060799:CDS |
| ATGAACTGATTATAAGCAGA+AGG | 0.586762 | 8.2:+13688825 | None:intergenic |
| CCACTCCCAAATGCAACGAT+AGG | 0.592244 | 8.2:-13689178 | MS.gene060799:CDS |
| AGACATGTCTAGCTGTAGCA+TGG | 0.594915 | 8.2:-13691424 | None:intergenic |
| ATTTCAAACAAGCTACTGCA+TGG | 0.595371 | 8.2:+13690326 | None:intergenic |
| TATGCAGGGAAGAGATTCAG+AGG | 0.621557 | 8.2:-13688694 | MS.gene060799:intron |
| AACCCTTTCCTCAGTAACAT+GGG | 0.626838 | 8.2:+13689130 | None:intergenic |
| TATACTCTGGATTCATGCAG+TGG | 0.629931 | 8.2:+13689216 | None:intergenic |
| TGTGCAGTGACCACATCGAA+CGG | 0.632060 | 8.2:+13690298 | None:intergenic |
| ACCAACCACCCATGTTACTG+AGG | 0.669098 | 8.2:-13689138 | MS.gene060799:CDS |
| GAAATAGTGACCGTTCGATG+TGG | 0.670282 | 8.2:-13690308 | MS.gene060799:CDS |
| CCTTTCCTCAGTAACATGGG+TGG | 0.674444 | 8.2:+13689133 | None:intergenic |
| CCATGACAGTGACTGAAACG+CGG | 0.691630 | 8.2:+13690250 | None:intergenic |
| TGACAGTGACTGAAACGCGG+CGG | 0.753574 | 8.2:+13690253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGATTGAAAAATTAAAT+TGG | + | chr8.2:13691317-13691336 | None:intergenic | 10.0% |
| !!! | ATTATTTCTTTATTTTTTAG+TGG | - | chr8.2:13691208-13691227 | MS.gene060799:intron | 10.0% |
| !!! | TGATTATTTTTATTATATTC+AGG | - | chr8.2:13691373-13691392 | MS.gene060799:CDS | 10.0% |
| !!! | TTATTTCTTTATTTTTTAGT+GGG | - | chr8.2:13691209-13691228 | MS.gene060799:intron | 10.0% |
| !! | TAAACAAGAGAAAATTAATT+AGG | + | chr8.2:13689102-13689121 | None:intergenic | 15.0% |
| !! | TTTAAATAGATAGGAAAAAA+AGG | + | chr8.2:13690688-13690707 | None:intergenic | 15.0% |
| !!! | CATAATTTTATATATATGCA+GGG | - | chr8.2:13691047-13691066 | MS.gene060799:intron | 15.0% |
| !!! | GGATTTTTTTTTTTTTTTGT+GGG | - | chr8.2:13689239-13689258 | MS.gene060799:intron | 15.0% |
| !!! | TCATAATTTTATATATATGC+AGG | - | chr8.2:13691046-13691065 | MS.gene060799:intron | 15.0% |
| !!! | TGGATTTTTTTTTTTTTTTG+TGG | - | chr8.2:13689238-13689257 | MS.gene060799:intron | 15.0% |
| !!! | TTTTTATTTTAATTGCAAGA+AGG | - | chr8.2:13688513-13688532 | MS.gene060799:CDS | 15.0% |
| !! | ATAATTAATTACTACTAGCT+AGG | + | chr8.2:13690070-13690089 | None:intergenic | 20.0% |
| !! | ATCAATGAAACAATAAAGTA+AGG | + | chr8.2:13690502-13690521 | None:intergenic | 20.0% |
| !! | TAATTAATTACTACTAGCTA+GGG | + | chr8.2:13690069-13690088 | None:intergenic | 20.0% |
| !! | TGTTTAAACTTAAACATACA+AGG | - | chr8.2:13689116-13689135 | MS.gene060799:intron | 20.0% |
| !!! | AGTTTTGATGATAAACATAA+TGG | - | chr8.2:13688957-13688976 | MS.gene060799:intron | 20.0% |
| !!! | ATATACTTGATAGTTTTCTT+TGG | - | chr8.2:13688557-13688576 | MS.gene060799:intron | 20.0% |
| !!! | ATATTTTAATTCTCTCTTTC+TGG | - | chr8.2:13688712-13688731 | MS.gene060799:intron | 20.0% |
| !!! | ATTTTCCTCATATTCATTTT+GGG | - | chr8.2:13691235-13691254 | MS.gene060799:intron | 20.0% |
| !!! | GTATATATAGTTGATTCAAT+TGG | - | chr8.2:13690992-13691011 | MS.gene060799:intron | 20.0% |
| !!! | TATCATTTAGTGATTTGTTT+TGG | + | chr8.2:13689002-13689021 | None:intergenic | 20.0% |
| !!! | TATTTTAATTCTCTCTTTCT+GGG | - | chr8.2:13688713-13688732 | MS.gene060799:intron | 20.0% |
| ! | AAAACTCCTTATAGTTTACT+TGG | - | chr8.2:13688437-13688456 | MS.gene060799:intron | 25.0% |
| ! | AATTAATTACTACTAGCTAG+GGG | + | chr8.2:13690068-13690087 | None:intergenic | 25.0% |
| ! | AGTCTATGAAAAAGGAAAAT+AGG | + | chr8.2:13689873-13689892 | None:intergenic | 25.0% |
| ! | ATGAAACAATAAAGTAAGGA+AGG | + | chr8.2:13690498-13690517 | None:intergenic | 25.0% |
| ! | GATTTAGAAAATAAACTACG+TGG | + | chr8.2:13690796-13690815 | None:intergenic | 25.0% |
| ! | GCTAGTTAGTAATTAATCAA+AGG | - | chr8.2:13689378-13689397 | MS.gene060799:intron | 25.0% |
| ! | TAGGAAAAGTTCATATATCT+AGG | - | chr8.2:13690000-13690019 | MS.gene060799:intron | 25.0% |
| ! | TGAATGAATTCCTTTATACT+TGG | + | chr8.2:13688625-13688644 | None:intergenic | 25.0% |
| !! | AAAACATTTTCAGTATGGTT+TGG | + | chr8.2:13689923-13689942 | None:intergenic | 25.0% |
| !! | CATTTTCCTCATATTCATTT+TGG | - | chr8.2:13691234-13691253 | MS.gene060799:intron | 25.0% |
| !! | TAAGCAAAACATTTTCAGTA+TGG | + | chr8.2:13689928-13689947 | None:intergenic | 25.0% |
| !! | TAGTATTTCTATGTTCGTTA+AGG | + | chr8.2:13690828-13690847 | None:intergenic | 25.0% |
| !!! | AAATAGGTTTGTTTTTATGG+CGG | + | chr8.2:13689857-13689876 | None:intergenic | 25.0% |
| !!! | ATTCTTTATTTTCTACCTCT+TGG | - | chr8.2:13689065-13689084 | MS.gene060799:intron | 25.0% |
| !!! | GGAAAATAGGTTTGTTTTTA+TGG | + | chr8.2:13689860-13689879 | None:intergenic | 25.0% |
| !!! | TTGTTTCATTGATTTTCTTC+AGG | - | chr8.2:13690509-13690528 | MS.gene060799:intron | 25.0% |
| AAAACAAGGCATATAGAGAA+AGG | - | chr8.2:13688886-13688905 | MS.gene060799:intron | 30.0% | |
| AAAATAGATCTATCCTAGCT+AGG | - | chr8.2:13689615-13689634 | MS.gene060799:intron | 30.0% | |
| AAACAAGGCATATAGAGAAA+GGG | - | chr8.2:13688887-13688906 | MS.gene060799:intron | 30.0% | |
| AAATCTATGGTCTGTAAACA+TGG | - | chr8.2:13689479-13689498 | MS.gene060799:intron | 30.0% | |
| AATTCATTCAGATCCTGAAA+AGG | - | chr8.2:13688635-13688654 | MS.gene060799:CDS | 30.0% | |
| ACAATATTGCAAAAGTTGCA+AGG | + | chr8.2:13688389-13688408 | None:intergenic | 30.0% | |
| ACAGTTCTTTCTTGTTAAGT+TGG | + | chr8.2:13690447-13690466 | None:intergenic | 30.0% | |
| ATATATATGTAGCATGCAAG+AGG | + | chr8.2:13688476-13688495 | None:intergenic | 30.0% | |
| ATGAACTGATTATAAGCAGA+AGG | + | chr8.2:13690933-13690952 | None:intergenic | 30.0% | |
| ATTAATTACTACTAGCTAGG+GGG | + | chr8.2:13690067-13690086 | None:intergenic | 30.0% | |
| CAATATTGCAAAAGTTGCAA+GGG | + | chr8.2:13688388-13688407 | None:intergenic | 30.0% | |
| CTTTCTTTCAAGCTAAAACA+AGG | - | chr8.2:13688872-13688891 | MS.gene060799:intron | 30.0% | |
| GAAAGAAAGAGAAAGAGAAA+GGG | + | chr8.2:13688861-13688880 | None:intergenic | 30.0% | |
| GTGTACATATCCAAGTATAA+AGG | - | chr8.2:13688612-13688631 | MS.gene060799:intron | 30.0% | |
| TAAAGAATAGAGAAGAAGAG+AGG | + | chr8.2:13689053-13689072 | None:intergenic | 30.0% | |
| TCAGATCCAAGTAAACTATA+AGG | + | chr8.2:13688446-13688465 | None:intergenic | 30.0% | |
| TGAAAGAAAGAGAAAGAGAA+AGG | + | chr8.2:13688862-13688881 | None:intergenic | 30.0% | |
| ! | AAAATCGAAGTATCTTGGTT+TGG | - | chr8.2:13689698-13689717 | MS.gene060799:intron | 30.0% |
| ! | ATCACATTTCACACTTGTTA+TGG | + | chr8.2:13689217-13689236 | None:intergenic | 30.0% |
| ! | ATTTGATAACCTTGATGAGA+GGG | + | chr8.2:13688812-13688831 | None:intergenic | 30.0% |
| ! | CTTTTGCAATATTGTTCTTG+CGG | - | chr8.2:13688394-13688413 | MS.gene060799:intron | 30.0% |
| ! | GAGAGTATATAGTAAACTCA+CGG | + | chr8.2:13690659-13690678 | None:intergenic | 30.0% |
| ! | TATTTGATAACCTTGATGAG+AGG | + | chr8.2:13688813-13688832 | None:intergenic | 30.0% |
| ! | TCTTTGAAAAAGAGTTGAGA+AGG | + | chr8.2:13689167-13689186 | None:intergenic | 30.0% |
| ! | TTGAGAAAATCGAAGTATCT+TGG | - | chr8.2:13689693-13689712 | MS.gene060799:intron | 30.0% |
| !! | CTTGTTAAGTTGGAAATACT+AGG | + | chr8.2:13690437-13690456 | None:intergenic | 30.0% |
| !! | TCACATTTCACACTTGTTAT+GGG | + | chr8.2:13689216-13689235 | None:intergenic | 30.0% |
| !! | TGATAGTTTTCTTTGGTCTT+TGG | - | chr8.2:13688564-13688583 | MS.gene060799:intron | 30.0% |
| !!! | AATCCTCATTTTTCAAGATC+AGG | - | chr8.2:13689189-13689208 | MS.gene060799:CDS | 30.0% |
| AACAAGTGTGAAATGTGATG+TGG | - | chr8.2:13689218-13689237 | MS.gene060799:CDS | 35.0% | |
| ACACACACACAAAAAGTCAA+CGG | + | chr8.2:13689300-13689319 | None:intergenic | 35.0% | |
| ACAGTTGTTGGTATGAATGA+AGG | + | chr8.2:13690263-13690282 | None:intergenic | 35.0% | |
| AGCTACAAAGCTAGTTAGTT+AGG | - | chr8.2:13689729-13689748 | MS.gene060799:intron | 35.0% | |
| AGTATATAGTAAACTCACGG+CGG | + | chr8.2:13690656-13690675 | None:intergenic | 35.0% | |
| ATCAATGCTTTGTACAGAGA+TGG | + | chr8.2:13690384-13690403 | None:intergenic | 35.0% | |
| ATCAGCCCAAAATGAATATG+AGG | + | chr8.2:13691243-13691262 | None:intergenic | 35.0% | |
| ATTTCAAACAAGCTACTGCA+TGG | + | chr8.2:13689432-13689451 | None:intergenic | 35.0% | |
| CATACCAACAACTGTCAATT+GGG | - | chr8.2:13690268-13690287 | MS.gene060799:CDS | 35.0% | |
| TAAACTACGTGGCTATGATA+TGG | + | chr8.2:13690785-13690804 | None:intergenic | 35.0% | |
| TCATACCAACAACTGTCAAT+TGG | - | chr8.2:13690267-13690286 | MS.gene060799:CDS | 35.0% | |
| TTCTGACGAGTCTATGAAAA+AGG | + | chr8.2:13689881-13689900 | None:intergenic | 35.0% | |
| TTGAAAAAGAGTTGAGAAGG+TGG | + | chr8.2:13689164-13689183 | None:intergenic | 35.0% | |
| ! | AAAGACTTTTGCCTTTGCTT+TGG | - | chr8.2:13689949-13689968 | MS.gene060799:intron | 35.0% |
| ! | AAGACTTTTGCCTTTGCTTT+GGG | - | chr8.2:13689950-13689969 | MS.gene060799:intron | 35.0% |
| ! | ACACATCAAATCAGTTCTGA+AGG | + | chr8.2:13689981-13690000 | None:intergenic | 35.0% |
| ! | TATTCATTTTGGGCTGATGT+TGG | - | chr8.2:13691245-13691264 | MS.gene060799:intron | 35.0% |
| !! | AAGTATCTTGGTTTGGCTTT+GGG | - | chr8.2:13689705-13689724 | MS.gene060799:intron | 35.0% |
| !! | ATTTTCAGTATGGTTTGGCT+TGG | + | chr8.2:13689918-13689937 | None:intergenic | 35.0% |
| !! | TCAGAACTGATTTGATGTGT+AGG | - | chr8.2:13689981-13690000 | MS.gene060799:intron | 35.0% |
| !!! | ATTTTTGGTGTAGATCCCTA+AGG | - | chr8.2:13690237-13690256 | MS.gene060799:intron | 35.0% |
| AAAGTCATACCCTCTCATCA+AGG | - | chr8.2:13688800-13688819 | MS.gene060799:intron | 40.0% | |
| AACCCTTTCCTCAGTAACAT+GGG | + | chr8.2:13690628-13690647 | None:intergenic | 40.0% | |
| AATACACACACACACTCACA+TGG | - | chr8.2:13688829-13688848 | MS.gene060799:CDS | 40.0% | |
| ACTGCATGAATCCAGAGTAT+AGG | - | chr8.2:13690541-13690560 | MS.gene060799:intron | 40.0% | |
| ATCAAAACTAGCAAGCTCAG+TGG | + | chr8.2:13688946-13688965 | None:intergenic | 40.0% | |
| CTAGTTCGAATCCTATACTC+TGG | + | chr8.2:13690555-13690574 | None:intergenic | 40.0% | |
| GAAATCAAAGAAGCCTAGCT+AGG | + | chr8.2:13689631-13689650 | None:intergenic | 40.0% | |
| GAAGGTAATACCCAAAGCAA+AGG | + | chr8.2:13689963-13689982 | None:intergenic | 40.0% | |
| GACTGCAAAAGAAAAGTCCA+GGG | + | chr8.2:13688774-13688793 | None:intergenic | 40.0% | |
| GAGCAACAATCAAGCTAAGA+TGG | - | chr8.2:13691269-13691288 | MS.gene060799:intron | 40.0% | |
| GCAATCCTATCGTTGCATTT+GGG | + | chr8.2:13690585-13690604 | None:intergenic | 40.0% | |
| GGACCTGATCTTGAAAAATG+AGG | + | chr8.2:13689195-13689214 | None:intergenic | 40.0% | |
| TAGGTCATATAGTAGCCAAG+AGG | + | chr8.2:13689083-13689102 | None:intergenic | 40.0% | |
| TATACTCTGGATTCATGCAG+TGG | + | chr8.2:13690542-13690561 | None:intergenic | 40.0% | |
| TCTGGATCATAACCTAGCTA+GGG | - | chr8.2:13689649-13689668 | MS.gene060799:intron | 40.0% | |
| TGACTGCAAAAGAAAAGTCC+AGG | + | chr8.2:13688775-13688794 | None:intergenic | 40.0% | |
| TGAGAAGGTGGAATGATCAA+GGG | + | chr8.2:13689152-13689171 | None:intergenic | 40.0% | |
| TGCAATCCTATCGTTGCATT+TGG | + | chr8.2:13690586-13690605 | None:intergenic | 40.0% | |
| TGGTATGAATGAAGGCCTTA+GGG | + | chr8.2:13690255-13690274 | None:intergenic | 40.0% | |
| TTCTGGATCATAACCTAGCT+AGG | - | chr8.2:13689648-13689667 | MS.gene060799:intron | 40.0% | |
| TTGAGAAGGTGGAATGATCA+AGG | + | chr8.2:13689153-13689172 | None:intergenic | 40.0% | |
| TTGGTATGAATGAAGGCCTT+AGG | + | chr8.2:13690256-13690275 | None:intergenic | 40.0% | |
| ! | AGCTAGGCTTCTTTGATTTC+TGG | - | chr8.2:13689631-13689650 | MS.gene060799:intron | 40.0% |
| ! | ATTTTCCAGAAACCCTAGCT+AGG | + | chr8.2:13689664-13689683 | None:intergenic | 40.0% |
| ! | CACAACATGCTTTCCTTTTC+AGG | + | chr8.2:13688651-13688670 | None:intergenic | 40.0% |
| ! | TTTTATGGCGGCTTACTTAC+AGG | + | chr8.2:13689845-13689864 | None:intergenic | 40.0% |
| !! | AGGTTGATTTGACTTGATGC+AGG | - | chr8.2:13689398-13689417 | MS.gene060799:intron | 40.0% |
| !! | AGTATCTTGGTTTGGCTTTG+GGG | - | chr8.2:13689706-13689725 | MS.gene060799:intron | 40.0% |
| !! | GAAGTATCTTGGTTTGGCTT+TGG | - | chr8.2:13689704-13689723 | MS.gene060799:intron | 40.0% |
| !! | TGAGAAGCGTTTGATGTCTA+CGG | - | chr8.2:13691400-13691419 | MS.gene060799:CDS | 40.0% |
| ACTGTCATGGCAAGATGTTC+AGG | - | chr8.2:13689518-13689537 | MS.gene060799:intron | 45.0% | |
| AGAAAGGGAGGACAAAGTGA+AGG | - | chr8.2:13688902-13688921 | MS.gene060799:intron | 45.0% | |
| AGCTACTGCCTAACTAGCTA+GGG | + | chr8.2:13689812-13689831 | None:intergenic | 45.0% | |
| ATGTAGCAGAGTTGTTCAGC+AGG | + | chr8.2:13688365-13688384 | None:intergenic | 45.0% | |
| CAACAACTGTCAATTGGGCT+AGG | - | chr8.2:13690273-13690292 | MS.gene060799:CDS | 45.0% | |
| CAACCCTTTCCTCAGTAACA+TGG | + | chr8.2:13690629-13690648 | None:intergenic | 45.0% | |
| CAAGGCATATAGAGAAAGGG+AGG | - | chr8.2:13688890-13688909 | MS.gene060799:intron | 45.0% | |
| CACCCATGTTACTGAGGAAA+GGG | - | chr8.2:13690623-13690642 | MS.gene060799:intron | 45.0% | |
| CATAACCTAGCTAGGGTTTC+TGG | - | chr8.2:13689656-13689675 | MS.gene060799:intron | 45.0% | |
| CTAGCCCAATTGACAGTTGT+TGG | + | chr8.2:13690275-13690294 | None:intergenic | 45.0% | |
| GAAATAGTGACCGTTCGATG+TGG | - | chr8.2:13689447-13689466 | MS.gene060799:intron | 45.0% | |
| GCTTCTCTGTGACTGATATC+AGG | + | chr8.2:13691102-13691121 | None:intergenic | 45.0% | |
| GGAAGAGATTCAGAGGATCA+AGG | - | chr8.2:13691068-13691087 | MS.gene060799:intron | 45.0% | |
| GTGGTCACTGCACAAATCTA+TGG | - | chr8.2:13689466-13689485 | MS.gene060799:intron | 45.0% | |
| TATGCAGGGAAGAGATTCAG+AGG | - | chr8.2:13691061-13691080 | MS.gene060799:intron | 45.0% | |
| TTCTCTCTTTCTGGGCTTGA+TGG | - | chr8.2:13688721-13688740 | MS.gene060799:intron | 45.0% | |
| !! | TCAGTATGGTTTGGCTTGGT+GGG | + | chr8.2:13689914-13689933 | None:intergenic | 45.0% |
| !! | TTCAGTATGGTTTGGCTTGG+TGG | + | chr8.2:13689915-13689934 | None:intergenic | 45.0% |
| !! | ATATTTAAATTTAAATAGAT+AGG | + | chr8.2:13690697-13690716 | None:intergenic | 5.0% |
| !!! | ATATTTTTTATAATAAAGAT+TGG | + | chr8.2:13690117-13690136 | None:intergenic | 5.0% |
| !!! | TTTTGTTTATTATATATTTT+TGG | - | chr8.2:13690222-13690241 | MS.gene060799:intron | 5.0% |
| AATTTCCAGCTCCCGAGAAG+AGG | - | chr8.2:13690898-13690917 | MS.gene060799:intron | 50.0% | |
| ACCAACCACCCATGTTACTG+AGG | - | chr8.2:13690617-13690636 | MS.gene060799:intron | 50.0% | |
| AGGTACACGTTGCCTCTTCT+CGG | + | chr8.2:13690913-13690932 | None:intergenic | 50.0% | |
| CAGCTACTGCCTAACTAGCT+AGG | + | chr8.2:13689813-13689832 | None:intergenic | 50.0% | |
| CCACCCATGTTACTGAGGAA+AGG | - | chr8.2:13690622-13690641 | MS.gene060799:intron | 50.0% | |
| CCACTCCCAAATGCAACGAT+AGG | - | chr8.2:13690577-13690596 | MS.gene060799:intron | 50.0% | |
| CCATGACAGTGACTGAAACG+CGG | + | chr8.2:13689508-13689527 | None:intergenic | 50.0% | |
| CCTATCGTTGCATTTGGGAG+TGG | + | chr8.2:13690580-13690599 | None:intergenic | 50.0% | |
| CCTTTCCTCAGTAACATGGG+TGG | + | chr8.2:13690625-13690644 | None:intergenic | 50.0% | |
| GAGTCAAGTCTCAATCTCCC+TGG | - | chr8.2:13688754-13688773 | MS.gene060799:intron | 50.0% | |
| TATGGCGGCTTACTTACAGG+TGG | + | chr8.2:13689842-13689861 | None:intergenic | 50.0% | |
| TCCTCAGTAACATGGGTGGT+TGG | + | chr8.2:13690621-13690640 | None:intergenic | 50.0% | |
| TCTGGATTCATGCAGTGGCT+AGG | + | chr8.2:13690537-13690556 | None:intergenic | 50.0% | |
| TGAGCTAGCCCTAGCTAGTT+AGG | - | chr8.2:13689801-13689820 | MS.gene060799:intron | 50.0% | |
| TGTGCAGTGACCACATCGAA+CGG | + | chr8.2:13689460-13689479 | None:intergenic | 50.0% | |
| !! | ACTACTAGCTAGGGGGTGTT+TGG | + | chr8.2:13690060-13690079 | None:intergenic | 50.0% |
| !! | ATGGTTTGGCTTGGTGGGTT+AGG | + | chr8.2:13689909-13689928 | None:intergenic | 50.0% |
| CCGCGTTTCAGTCACTGTCA+TGG | - | chr8.2:13689505-13689524 | MS.gene060799:intron | 55.0% | |
| GGGAGGACAAAGTGAAGGTG+TGG | - | chr8.2:13688907-13688926 | MS.gene060799:intron | 55.0% | |
| GGTACACGTTGCCTCTTCTC+GGG | + | chr8.2:13690912-13690931 | None:intergenic | 55.0% | |
| TGACAGTGACTGAAACGCGG+CGG | + | chr8.2:13689505-13689524 | None:intergenic | 55.0% | |
| !! | CTAGCTAGGGCTAGCTCATC+AGG | + | chr8.2:13689799-13689818 | None:intergenic | 55.0% |
| !! | AGGGGGTGTTTGGCTGGATG+AGG | + | chr8.2:13690050-13690069 | None:intergenic | 60.0% |
| !! | CTAGCTAGGGGGTGTTTGGC+TGG | + | chr8.2:13690056-13690075 | None:intergenic | 60.0% |
| CGTTGCCTCTTCTCGGGAGC+TGG | + | chr8.2:13690906-13690925 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 13688335 | 13691442 | 13688335 | ID=MS.gene060799 |
| chr8.2 | mRNA | 13688335 | 13691442 | 13688335 | ID=MS.gene060799.t1;Parent=MS.gene060799 |
| chr8.2 | exon | 13691362 | 13691442 | 13691362 | ID=MS.gene060799.t1.exon1;Parent=MS.gene060799.t1 |
| chr8.2 | CDS | 13691362 | 13691442 | 13691362 | ID=cds.MS.gene060799.t1;Parent=MS.gene060799.t1 |
| chr8.2 | exon | 13690238 | 13690357 | 13690238 | ID=MS.gene060799.t1.exon2;Parent=MS.gene060799.t1 |
| chr8.2 | CDS | 13690238 | 13690357 | 13690238 | ID=cds.MS.gene060799.t1;Parent=MS.gene060799.t1 |
| chr8.2 | exon | 13689120 | 13689246 | 13689120 | ID=MS.gene060799.t1.exon3;Parent=MS.gene060799.t1 |
| chr8.2 | CDS | 13689120 | 13689246 | 13689120 | ID=cds.MS.gene060799.t1;Parent=MS.gene060799.t1 |
| chr8.2 | exon | 13688822 | 13688870 | 13688822 | ID=MS.gene060799.t1.exon4;Parent=MS.gene060799.t1 |
| chr8.2 | CDS | 13688822 | 13688870 | 13688822 | ID=cds.MS.gene060799.t1;Parent=MS.gene060799.t1 |
| chr8.2 | exon | 13688634 | 13688709 | 13688634 | ID=MS.gene060799.t1.exon5;Parent=MS.gene060799.t1 |
| chr8.2 | CDS | 13688634 | 13688709 | 13688634 | ID=cds.MS.gene060799.t1;Parent=MS.gene060799.t1 |
| chr8.2 | exon | 13688481 | 13688549 | 13688481 | ID=MS.gene060799.t1.exon6;Parent=MS.gene060799.t1 |
| chr8.2 | CDS | 13688481 | 13688549 | 13688481 | ID=cds.MS.gene060799.t1;Parent=MS.gene060799.t1 |
| chr8.2 | exon | 13688335 | 13688382 | 13688335 | ID=MS.gene060799.t1.exon7;Parent=MS.gene060799.t1 |
| chr8.2 | CDS | 13688335 | 13688382 | 13688335 | ID=cds.MS.gene060799.t1;Parent=MS.gene060799.t1 |
| Gene Sequence |
| Protein sequence |
