Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060801.t1 | RHN63957.1 | 95.8 | 191 | 6 | 1 | 1 | 189 | 1 | 191 | 3.40E-99 | 370.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060801.t1 | Q8GW46 | 75.8 | 165 | 34 | 2 | 8 | 172 | 5 | 163 | 8.1e-65 | 248.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060801.t1 | A0A396IM32 | 95.8 | 191 | 6 | 1 | 1 | 189 | 1 | 191 | 2.5e-99 | 370.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene060801.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049907 | MS.gene060801 | 0.818618 | 1.78E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene060801 | 0.804901 | 1.73E-49 | -1.69E-46 |
| MS.gene050581 | MS.gene060801 | 0.837693 | 4.47E-57 | -1.69E-46 |
| MS.gene053813 | MS.gene060801 | 0.805563 | 1.26E-49 | -1.69E-46 |
| MS.gene056611 | MS.gene060801 | 0.818188 | 2.23E-52 | -1.69E-46 |
| MS.gene058459 | MS.gene060801 | 0.832273 | 1.04E-55 | -1.69E-46 |
| MS.gene058903 | MS.gene060801 | 0.848968 | 4.37E-60 | -1.69E-46 |
| MS.gene059974 | MS.gene060801 | 0.841824 | 3.76E-58 | -1.69E-46 |
| MS.gene060005 | MS.gene060801 | 0.854583 | 1.12E-61 | -1.69E-46 |
| MS.gene060356 | MS.gene060801 | 0.802102 | 6.58E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene060801 | 0.983867 | 6.27E-159 | -1.69E-46 |
| MS.gene060800 | MS.gene060801 | 0.971157 | 1.01E-132 | -1.69E-46 |
| MS.gene060801 | MS.gene063103 | 0.808974 | 2.38E-50 | -1.69E-46 |
| MS.gene060801 | MS.gene063268 | 0.806286 | 8.86E-50 | -1.69E-46 |
| MS.gene060801 | MS.gene069891 | 0.81251 | 4.09E-51 | -1.69E-46 |
| MS.gene060801 | MS.gene074368 | 0.803769 | 2.98E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene074419 | 0.804802 | 1.81E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene07761 | 0.847477 | 1.13E-59 | -1.69E-46 |
| MS.gene060801 | MS.gene08557 | 0.800099 | 1.69E-48 | -1.69E-46 |
| MS.gene060801 | MS.gene08691 | 0.801636 | 8.20E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene08753 | 0.815264 | 1.01E-51 | -1.69E-46 |
| MS.gene060801 | MS.gene08811 | 0.848401 | 6.28E-60 | -1.69E-46 |
| MS.gene060801 | MS.gene08966 | 0.841556 | 4.42E-58 | -1.69E-46 |
| MS.gene060801 | MS.gene09086 | 0.814312 | 1.64E-51 | -1.69E-46 |
| MS.gene060801 | MS.gene09279 | 0.804004 | 2.66E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene09357 | 0.809386 | 1.94E-50 | -1.69E-46 |
| MS.gene060801 | MS.gene20068 | 0.801558 | 8.51E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene22224 | 0.811731 | 6.05E-51 | -1.69E-46 |
| MS.gene060801 | MS.gene22673 | 0.805368 | 1.38E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene22859 | 0.831442 | 1.67E-55 | -1.69E-46 |
| MS.gene060801 | MS.gene22906 | 0.803825 | 2.90E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene25886 | 0.808757 | 2.65E-50 | -1.69E-46 |
| MS.gene060801 | MS.gene26193 | 0.808776 | 2.62E-50 | -1.69E-46 |
| MS.gene060801 | MS.gene29785 | 0.830868 | 2.30E-55 | -1.69E-46 |
| MS.gene060801 | MS.gene31854 | -0.818297 | 2.11E-52 | -1.69E-46 |
| MS.gene060801 | MS.gene32736 | 0.826293 | 2.94E-54 | -1.69E-46 |
| MS.gene060801 | MS.gene33652 | -0.817885 | 2.61E-52 | -1.69E-46 |
| MS.gene060801 | MS.gene35480 | 0.805184 | 1.51E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene36377 | 0.811465 | 6.91E-51 | -1.69E-46 |
| MS.gene060801 | MS.gene37305 | 0.811857 | 5.68E-51 | -1.69E-46 |
| MS.gene060801 | MS.gene41950 | 0.84619 | 2.54E-59 | -1.69E-46 |
| MS.gene060801 | MS.gene42660 | 0.813851 | 2.08E-51 | -1.69E-46 |
| MS.gene060801 | MS.gene43374 | -0.806286 | 8.86E-50 | -1.69E-46 |
| MS.gene060801 | MS.gene45237 | 0.803511 | 3.37E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene48285 | 0.845857 | 3.13E-59 | -1.69E-46 |
| MS.gene060801 | MS.gene48287 | 0.841121 | 5.76E-58 | -1.69E-46 |
| MS.gene060801 | MS.gene48401 | 0.847163 | 1.38E-59 | -1.69E-46 |
| MS.gene060801 | MS.gene49928 | 0.803019 | 4.26E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene53276 | 0.846714 | 1.83E-59 | -1.69E-46 |
| MS.gene060801 | MS.gene58273 | 0.805809 | 1.12E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene59947 | 0.983682 | 2.05E-158 | -1.69E-46 |
| MS.gene060801 | MS.gene61955 | 0.809695 | 1.67E-50 | -1.69E-46 |
| MS.gene060801 | MS.gene62396 | 0.985922 | 4.26E-165 | -1.69E-46 |
| MS.gene060801 | MS.gene63040 | 0.800128 | 1.67E-48 | -1.69E-46 |
| MS.gene060801 | MS.gene66848 | 0.800436 | 1.44E-48 | -1.69E-46 |
| MS.gene060801 | MS.gene68751 | 0.809785 | 1.59E-50 | -1.69E-46 |
| MS.gene060801 | MS.gene69384 | 0.806765 | 7.02E-50 | -1.69E-46 |
| MS.gene060801 | MS.gene69718 | 0.811106 | 8.26E-51 | -1.69E-46 |
| MS.gene060801 | MS.gene70562 | 0.804713 | 1.89E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene75616 | 0.876373 | 1.47E-68 | -1.69E-46 |
| MS.gene060801 | MS.gene76557 | 0.854645 | 1.07E-61 | -1.69E-46 |
| MS.gene060801 | MS.gene79806 | 0.861776 | 8.09E-64 | -1.69E-46 |
| MS.gene060801 | MS.gene85171 | 0.871846 | 5.01E-67 | -1.69E-46 |
| MS.gene060801 | MS.gene93507 | 0.802863 | 4.58E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene98287 | 0.81403 | 1.90E-51 | -1.69E-46 |
| MS.gene060801 | MS.gene98532 | 0.817063 | 4.00E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060801.t1 | MTR_4g114730 | 95.288 | 191 | 7 | 1 | 1 | 189 | 1 | 191 | 5.41e-136 | 378 |
| MS.gene060801.t1 | MTR_2g087740 | 56.667 | 180 | 67 | 4 | 5 | 173 | 2 | 181 | 4.45e-60 | 186 |
| MS.gene060801.t1 | MTR_4g025900 | 53.403 | 191 | 63 | 4 | 14 | 184 | 25 | 209 | 2.64e-54 | 172 |
| MS.gene060801.t1 | MTR_4g050300 | 56.000 | 175 | 61 | 6 | 5 | 173 | 2 | 166 | 1.27e-52 | 166 |
| MS.gene060801.t1 | MTR_4g101660 | 54.971 | 171 | 59 | 4 | 8 | 163 | 14 | 181 | 2.31e-50 | 162 |
| MS.gene060801.t1 | MTR_5g034030 | 49.686 | 159 | 58 | 4 | 12 | 156 | 12 | 162 | 5.58e-45 | 148 |
| MS.gene060801.t1 | MTR_5g046230 | 41.875 | 160 | 72 | 3 | 5 | 155 | 8 | 155 | 1.10e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060801.t1 | AT2G26580 | 75.301 | 166 | 35 | 2 | 7 | 172 | 4 | 163 | 6.88e-88 | 255 |
| MS.gene060801.t1 | AT2G26580 | 75.301 | 166 | 35 | 2 | 7 | 172 | 4 | 163 | 6.88e-88 | 255 |
| MS.gene060801.t1 | AT1G08465 | 53.631 | 179 | 60 | 5 | 5 | 171 | 2 | 169 | 5.25e-56 | 175 |
| MS.gene060801.t1 | AT2G45190 | 54.802 | 177 | 63 | 6 | 4 | 163 | 14 | 190 | 2.23e-54 | 172 |
| MS.gene060801.t1 | AT4G00180 | 50.811 | 185 | 57 | 4 | 12 | 165 | 23 | 204 | 1.41e-47 | 155 |
| MS.gene060801.t1 | AT4G00180 | 48.864 | 176 | 56 | 4 | 21 | 165 | 1 | 173 | 2.75e-39 | 133 |
| MS.gene060801.t1 | AT1G23420 | 47.205 | 161 | 71 | 3 | 13 | 159 | 20 | 180 | 1.01e-38 | 132 |
| MS.gene060801.t1 | AT1G23420 | 47.205 | 161 | 71 | 3 | 13 | 159 | 51 | 211 | 2.96e-38 | 132 |
| MS.gene060801.t1 | AT2G45190 | 92.982 | 57 | 4 | 0 | 107 | 163 | 70 | 126 | 4.29e-34 | 119 |
| MS.gene060801.t1 | AT1G69180 | 42.069 | 145 | 78 | 2 | 11 | 155 | 18 | 156 | 3.92e-32 | 114 |
Find 38 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATCCTATCGTTGCATT+TGG | 0.296610 | 8.1:-11634455 | None:intergenic |
| GCTTCTCTGTGACTGATATC+AGG | 0.363234 | 8.1:-11634971 | None:intergenic |
| GCAATCCTATCGTTGCATTT+GGG | 0.399881 | 8.1:-11634454 | None:intergenic |
| ACTGTCATGGCAAGATGTTC+AGG | 0.423195 | 8.1:+11633389 | MS.gene060801:CDS |
| GTGGTCACTGCACAAATCTA+TGG | 0.424333 | 8.1:+11633337 | MS.gene060801:CDS |
| AGGTACACGTTGCCTCTTCT+CGG | 0.458670 | 8.1:-11634782 | None:intergenic |
| ATCAGCCCAAAATGAATATG+AGG | 0.476928 | 8.1:-11635112 | None:intergenic |
| CACCCATGTTACTGAGGAAA+GGG | 0.483814 | 8.1:+11634495 | MS.gene060801:CDS |
| GAGCAACAATCAAGCTAAGA+TGG | 0.499438 | 8.1:+11635141 | MS.gene060801:CDS |
| TCCTCAGTAACATGGGTGGT+TGG | 0.501150 | 8.1:-11634490 | None:intergenic |
| ACTGCATGAATCCAGAGTAT+AGG | 0.501971 | 8.1:+11634413 | MS.gene060801:CDS |
| GGTACACGTTGCCTCTTCTC+GGG | 0.503039 | 8.1:-11634781 | None:intergenic |
| CAACCCTTTCCTCAGTAACA+TGG | 0.504380 | 8.1:-11634498 | None:intergenic |
| TGAGAAGCGTTTGATGTCTA+CGG | 0.515736 | 8.1:+11635272 | MS.gene060801:CDS |
| ATGTAGCAGAGTTGTTCAGC+AGG | 0.519727 | 8.1:-11632232 | None:intergenic |
| CCTATCGTTGCATTTGGGAG+TGG | 0.533061 | 8.1:-11634449 | None:intergenic |
| ACAATATTGCAAAAGTTGCA+AGG | 0.540036 | 8.1:-11632256 | None:intergenic |
| AATTTCCAGCTCCCGAGAAG+AGG | 0.540719 | 8.1:+11634770 | MS.gene060801:intron |
| AAATCTATGGTCTGTAAACA+TGG | 0.552321 | 8.1:+11633350 | MS.gene060801:CDS |
| CCGCGTTTCAGTCACTGTCA+TGG | 0.556178 | 8.1:+11633376 | MS.gene060801:CDS |
| TCTGGATTCATGCAGTGGCT+AGG | 0.562771 | 8.1:-11634406 | None:intergenic |
| CTAGTTCGAATCCTATACTC+TGG | 0.567724 | 8.1:-11634424 | None:intergenic |
| GGAAGAGATTCAGAGGATCA+AGG | 0.576711 | 8.1:+11634940 | MS.gene060801:CDS |
| CAATATTGCAAAAGTTGCAA+GGG | 0.579397 | 8.1:-11632255 | None:intergenic |
| CCACCCATGTTACTGAGGAA+AGG | 0.581614 | 8.1:+11634494 | MS.gene060801:CDS |
| ATGAACTGATTATAAGCAGA+AGG | 0.586762 | 8.1:-11634802 | None:intergenic |
| CCACTCCCAAATGCAACGAT+AGG | 0.592244 | 8.1:+11634449 | MS.gene060801:CDS |
| AGACATGTCTAGCTGTAGCA+TGG | 0.594915 | 8.1:+11632201 | None:intergenic |
| ATTTCAAACAAGCTACTGCA+TGG | 0.595371 | 8.1:-11633300 | None:intergenic |
| TATGCAGGGAAGAGATTCAG+AGG | 0.621557 | 8.1:+11634933 | MS.gene060801:intron |
| AACCCTTTCCTCAGTAACAT+GGG | 0.626838 | 8.1:-11634497 | None:intergenic |
| TATACTCTGGATTCATGCAG+TGG | 0.629931 | 8.1:-11634411 | None:intergenic |
| TGTGCAGTGACCACATCGAA+CGG | 0.632060 | 8.1:-11633328 | None:intergenic |
| ACCAACCACCCATGTTACTG+AGG | 0.669098 | 8.1:+11634489 | MS.gene060801:CDS |
| GAAATAGTGACCGTTCGATG+TGG | 0.670282 | 8.1:+11633318 | MS.gene060801:CDS |
| CCTTTCCTCAGTAACATGGG+TGG | 0.674444 | 8.1:-11634494 | None:intergenic |
| CCATGACAGTGACTGAAACG+CGG | 0.691630 | 8.1:-11633376 | None:intergenic |
| TGACAGTGACTGAAACGCGG+CGG | 0.753574 | 8.1:-11633373 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGATTGAAAAATTAAAT+TGG | - | chr8.1:11635189-11635208 | None:intergenic | 10.0% |
| !!! | ATTATTTCTTTATTTTTTAG+TGG | + | chr8.1:11635080-11635099 | MS.gene060801:intron | 10.0% |
| !!! | GATTTTTTTTTTTTTTTTGT+GGG | + | chr8.1:11633110-11633129 | MS.gene060801:intron | 10.0% |
| !!! | TGATTATTTTTATTATATTC+AGG | + | chr8.1:11635245-11635264 | MS.gene060801:intron | 10.0% |
| !!! | TTATTTCTTTATTTTTTAGT+GGG | + | chr8.1:11635081-11635100 | MS.gene060801:intron | 10.0% |
| !! | TAAACAAGAGAAAATTAATT+AGG | - | chr8.1:11632972-11632991 | None:intergenic | 15.0% |
| !! | TTTAAATAGATAGGAAAAAA+AGG | - | chr8.1:11634560-11634579 | None:intergenic | 15.0% |
| !!! | CATAATTTTATATATATGCA+GGG | + | chr8.1:11634919-11634938 | MS.gene060801:intron | 15.0% |
| !!! | GGATTTTTTTTTTTTTTTTG+TGG | + | chr8.1:11633109-11633128 | MS.gene060801:intron | 15.0% |
| !!! | TCATAATTTTATATATATGC+AGG | + | chr8.1:11634918-11634937 | MS.gene060801:intron | 15.0% |
| !!! | TTTTTATTTTAATTGCAAGA+AGG | + | chr8.1:11632383-11632402 | MS.gene060801:intron | 15.0% |
| !! | ATAATTAATTACTACTAGCT+AGG | - | chr8.1:11633941-11633960 | None:intergenic | 20.0% |
| !! | ATCAATGAAACAATAAAGTA+AGG | - | chr8.1:11634374-11634393 | None:intergenic | 20.0% |
| !! | TAATTAATTACTACTAGCTA+GGG | - | chr8.1:11633940-11633959 | None:intergenic | 20.0% |
| !! | TGTTTAAACTTAAACATACA+AGG | + | chr8.1:11632986-11633005 | MS.gene060801:intron | 20.0% |
| !!! | AGTTTTGATGATAAACATAA+TGG | + | chr8.1:11632827-11632846 | MS.gene060801:intron | 20.0% |
| !!! | ATATACTTGATAGTTTTCTT+TGG | + | chr8.1:11632427-11632446 | MS.gene060801:intron | 20.0% |
| !!! | ATATTTTAATTCTCTCTTTC+TGG | + | chr8.1:11632582-11632601 | MS.gene060801:intron | 20.0% |
| !!! | ATTTTCCTCATATTCATTTT+GGG | + | chr8.1:11635107-11635126 | MS.gene060801:CDS | 20.0% |
| !!! | GTATATATAGTTGATTCAAT+TGG | + | chr8.1:11634864-11634883 | MS.gene060801:intron | 20.0% |
| !!! | TATCATTTAGTGATTTGTTT+TGG | - | chr8.1:11632872-11632891 | None:intergenic | 20.0% |
| !!! | TATTTTAATTCTCTCTTTCT+GGG | + | chr8.1:11632583-11632602 | MS.gene060801:intron | 20.0% |
| ! | AAAACTCCTTATAGTTTACT+TGG | + | chr8.1:11632307-11632326 | MS.gene060801:intron | 25.0% |
| ! | AATTAATTACTACTAGCTAG+GGG | - | chr8.1:11633939-11633958 | None:intergenic | 25.0% |
| ! | AGTCTATGAAAAAGGAAAAT+AGG | - | chr8.1:11633744-11633763 | None:intergenic | 25.0% |
| ! | ATGAAACAATAAAGTAAGGA+AGG | - | chr8.1:11634370-11634389 | None:intergenic | 25.0% |
| ! | GATTTAGAAAATAAACTACG+TGG | - | chr8.1:11634668-11634687 | None:intergenic | 25.0% |
| ! | GCTAGTTAGTAATTAATCAA+AGG | + | chr8.1:11633249-11633268 | MS.gene060801:intron | 25.0% |
| ! | TAGGAAAAGTTCATATATCT+AGG | + | chr8.1:11633871-11633890 | MS.gene060801:intron | 25.0% |
| ! | TGAATGAATTCCTTTATACT+TGG | - | chr8.1:11632495-11632514 | None:intergenic | 25.0% |
| !! | AAAACATTTTCAGTATGGTT+TGG | - | chr8.1:11633794-11633813 | None:intergenic | 25.0% |
| !! | CATTTTCCTCATATTCATTT+TGG | + | chr8.1:11635106-11635125 | MS.gene060801:CDS | 25.0% |
| !! | TAAGCAAAACATTTTCAGTA+TGG | - | chr8.1:11633799-11633818 | None:intergenic | 25.0% |
| !! | TAGTATTTCTATGTTCGTTA+AGG | - | chr8.1:11634700-11634719 | None:intergenic | 25.0% |
| !!! | AAATAGGTTTGTTTTTATGG+CGG | - | chr8.1:11633728-11633747 | None:intergenic | 25.0% |
| !!! | ATTCTTTATTTTCTACCTCT+TGG | + | chr8.1:11632935-11632954 | MS.gene060801:intron | 25.0% |
| !!! | GGAAAATAGGTTTGTTTTTA+TGG | - | chr8.1:11633731-11633750 | None:intergenic | 25.0% |
| !!! | TTGTTTCATTGATTTTCTTC+AGG | + | chr8.1:11634381-11634400 | MS.gene060801:intron | 25.0% |
| AAAACAAGGCATATAGAGAA+AGG | + | chr8.1:11632756-11632775 | MS.gene060801:intron | 30.0% | |
| AAAATAGATCTATCCTAGCT+AGG | + | chr8.1:11633486-11633505 | MS.gene060801:intron | 30.0% | |
| AAACAAGGCATATAGAGAAA+GGG | + | chr8.1:11632757-11632776 | MS.gene060801:intron | 30.0% | |
| AAATCTATGGTCTGTAAACA+TGG | + | chr8.1:11633350-11633369 | MS.gene060801:CDS | 30.0% | |
| AATTCATTCAGATCCTGAAA+AGG | + | chr8.1:11632505-11632524 | MS.gene060801:intron | 30.0% | |
| ACAATATTGCAAAAGTTGCA+AGG | - | chr8.1:11632259-11632278 | None:intergenic | 30.0% | |
| ACAGTTCTTTCTTGTTAAGT+TGG | - | chr8.1:11634319-11634338 | None:intergenic | 30.0% | |
| ATATATATGTAGCATGCAAG+AGG | - | chr8.1:11632346-11632365 | None:intergenic | 30.0% | |
| ATGAACTGATTATAAGCAGA+AGG | - | chr8.1:11634805-11634824 | None:intergenic | 30.0% | |
| ATTAATTACTACTAGCTAGG+GGG | - | chr8.1:11633938-11633957 | None:intergenic | 30.0% | |
| CAATATTGCAAAAGTTGCAA+GGG | - | chr8.1:11632258-11632277 | None:intergenic | 30.0% | |
| CTTTCTTTCAAGCTAAAACA+AGG | + | chr8.1:11632742-11632761 | MS.gene060801:intron | 30.0% | |
| GAAAGAAAGAGAAAGAGAAA+GGG | - | chr8.1:11632731-11632750 | None:intergenic | 30.0% | |
| GTGTACATATCCAAGTATAA+AGG | + | chr8.1:11632482-11632501 | MS.gene060801:intron | 30.0% | |
| TAAAGAATAGAGAAGAAGAG+AGG | - | chr8.1:11632923-11632942 | None:intergenic | 30.0% | |
| TCAGATCCAAGTAAACTATA+AGG | - | chr8.1:11632316-11632335 | None:intergenic | 30.0% | |
| TGAAAGAAAGAGAAAGAGAA+AGG | - | chr8.1:11632732-11632751 | None:intergenic | 30.0% | |
| ! | AAAATCGAAGTATCTTGGTT+TGG | + | chr8.1:11633569-11633588 | MS.gene060801:intron | 30.0% |
| ! | ATCACATTTCACACTTGTTA+TGG | - | chr8.1:11633087-11633106 | None:intergenic | 30.0% |
| ! | ATTTGATAACCTTGATGAGA+GGG | - | chr8.1:11632682-11632701 | None:intergenic | 30.0% |
| ! | CTTTTGCAATATTGTTCTTG+CGG | + | chr8.1:11632264-11632283 | MS.gene060801:CDS | 30.0% |
| ! | GAGAGTATATAGTAAACTCA+CGG | - | chr8.1:11634531-11634550 | None:intergenic | 30.0% |
| ! | TATTTGATAACCTTGATGAG+AGG | - | chr8.1:11632683-11632702 | None:intergenic | 30.0% |
| ! | TCTTTGAAAAAGAGTTGAGA+AGG | - | chr8.1:11633037-11633056 | None:intergenic | 30.0% |
| ! | TTGAGAAAATCGAAGTATCT+TGG | + | chr8.1:11633564-11633583 | MS.gene060801:intron | 30.0% |
| !! | CTTGTTAAGTTGGAAATACT+AGG | - | chr8.1:11634309-11634328 | None:intergenic | 30.0% |
| !! | TCACATTTCACACTTGTTAT+GGG | - | chr8.1:11633086-11633105 | None:intergenic | 30.0% |
| !! | TGATAGTTTTCTTTGGTCTT+TGG | + | chr8.1:11632434-11632453 | MS.gene060801:intron | 30.0% |
| !!! | AATCCTCATTTTTCAAGATC+AGG | + | chr8.1:11633059-11633078 | MS.gene060801:intron | 30.0% |
| AACAAGTGTGAAATGTGATG+TGG | + | chr8.1:11633088-11633107 | MS.gene060801:intron | 35.0% | |
| ACACACACACAAAAAGTCAA+CGG | - | chr8.1:11633171-11633190 | None:intergenic | 35.0% | |
| ACAGTTGTTGGTATGAATGA+AGG | - | chr8.1:11634135-11634154 | None:intergenic | 35.0% | |
| AGCTACAAAGCTAGTTAGTT+AGG | + | chr8.1:11633600-11633619 | MS.gene060801:intron | 35.0% | |
| AGTATATAGTAAACTCACGG+CGG | - | chr8.1:11634528-11634547 | None:intergenic | 35.0% | |
| ATCAATGCTTTGTACAGAGA+TGG | - | chr8.1:11634256-11634275 | None:intergenic | 35.0% | |
| ATCAGCCCAAAATGAATATG+AGG | - | chr8.1:11635115-11635134 | None:intergenic | 35.0% | |
| ATTTCAAACAAGCTACTGCA+TGG | - | chr8.1:11633303-11633322 | None:intergenic | 35.0% | |
| CATACCAACAACTGTCAATT+GGG | + | chr8.1:11634140-11634159 | MS.gene060801:intron | 35.0% | |
| TAAACTACGTGGCTATGATA+TGG | - | chr8.1:11634657-11634676 | None:intergenic | 35.0% | |
| TCATACCAACAACTGTCAAT+TGG | + | chr8.1:11634139-11634158 | MS.gene060801:intron | 35.0% | |
| TTCTGACGAGTCTATGAAAA+AGG | - | chr8.1:11633752-11633771 | None:intergenic | 35.0% | |
| TTGAAAAAGAGTTGAGAAGG+TGG | - | chr8.1:11633034-11633053 | None:intergenic | 35.0% | |
| ! | AAAGACTTTTGCCTTTGCTT+TGG | + | chr8.1:11633820-11633839 | MS.gene060801:intron | 35.0% |
| ! | AAGACTTTTGCCTTTGCTTT+GGG | + | chr8.1:11633821-11633840 | MS.gene060801:intron | 35.0% |
| ! | ACACATCAAATCAGTTCTGA+AGG | - | chr8.1:11633852-11633871 | None:intergenic | 35.0% |
| ! | TATTCATTTTGGGCTGATGT+TGG | + | chr8.1:11635117-11635136 | MS.gene060801:CDS | 35.0% |
| !! | AAGTATCTTGGTTTGGCTTT+GGG | + | chr8.1:11633576-11633595 | MS.gene060801:intron | 35.0% |
| !! | ATTTTCAGTATGGTTTGGCT+TGG | - | chr8.1:11633789-11633808 | None:intergenic | 35.0% |
| !! | TCAGAACTGATTTGATGTGT+AGG | + | chr8.1:11633852-11633871 | MS.gene060801:intron | 35.0% |
| !!! | ATTTTTGGTGTAGATCCCTA+AGG | + | chr8.1:11634109-11634128 | MS.gene060801:intron | 35.0% |
| AAAGTCATACCCTCTCATCA+AGG | + | chr8.1:11632670-11632689 | MS.gene060801:intron | 40.0% | |
| AACCCTTTCCTCAGTAACAT+GGG | - | chr8.1:11634500-11634519 | None:intergenic | 40.0% | |
| AATACACACACACACTCACA+TGG | + | chr8.1:11632699-11632718 | MS.gene060801:intron | 40.0% | |
| ACTGCATGAATCCAGAGTAT+AGG | + | chr8.1:11634413-11634432 | MS.gene060801:CDS | 40.0% | |
| ATCAAAACTAGCAAGCTCAG+TGG | - | chr8.1:11632816-11632835 | None:intergenic | 40.0% | |
| CTAGTTCGAATCCTATACTC+TGG | - | chr8.1:11634427-11634446 | None:intergenic | 40.0% | |
| GAAATCAAAGAAGCCTAGCT+AGG | - | chr8.1:11633502-11633521 | None:intergenic | 40.0% | |
| GAAGGTAATACCCAAAGCAA+AGG | - | chr8.1:11633834-11633853 | None:intergenic | 40.0% | |
| GACTGCAAAAGAAAAGTCCA+GGG | - | chr8.1:11632644-11632663 | None:intergenic | 40.0% | |
| GAGCAACAATCAAGCTAAGA+TGG | + | chr8.1:11635141-11635160 | MS.gene060801:CDS | 40.0% | |
| GCAATCCTATCGTTGCATTT+GGG | - | chr8.1:11634457-11634476 | None:intergenic | 40.0% | |
| GGACCTGATCTTGAAAAATG+AGG | - | chr8.1:11633065-11633084 | None:intergenic | 40.0% | |
| TAGGTCATATAGTAGCCAAG+AGG | - | chr8.1:11632953-11632972 | None:intergenic | 40.0% | |
| TATACTCTGGATTCATGCAG+TGG | - | chr8.1:11634414-11634433 | None:intergenic | 40.0% | |
| TCTGGATCATAACCTAGCTA+GGG | + | chr8.1:11633520-11633539 | MS.gene060801:intron | 40.0% | |
| TGACTGCAAAAGAAAAGTCC+AGG | - | chr8.1:11632645-11632664 | None:intergenic | 40.0% | |
| TGAGAAGGTGGAATGATCAA+GGG | - | chr8.1:11633022-11633041 | None:intergenic | 40.0% | |
| TGCAATCCTATCGTTGCATT+TGG | - | chr8.1:11634458-11634477 | None:intergenic | 40.0% | |
| TGGTATGAATGAAGGCCTTA+GGG | - | chr8.1:11634127-11634146 | None:intergenic | 40.0% | |
| TTCTGGATCATAACCTAGCT+AGG | + | chr8.1:11633519-11633538 | MS.gene060801:intron | 40.0% | |
| TTGAGAAGGTGGAATGATCA+AGG | - | chr8.1:11633023-11633042 | None:intergenic | 40.0% | |
| TTGGTATGAATGAAGGCCTT+AGG | - | chr8.1:11634128-11634147 | None:intergenic | 40.0% | |
| ! | AGCTAGGCTTCTTTGATTTC+TGG | + | chr8.1:11633502-11633521 | MS.gene060801:intron | 40.0% |
| ! | ATTTTCCAGAAACCCTAGCT+AGG | - | chr8.1:11633535-11633554 | None:intergenic | 40.0% |
| ! | CACAACATGCTTTCCTTTTC+AGG | - | chr8.1:11632521-11632540 | None:intergenic | 40.0% |
| ! | TTTTATGGCGGCTTACTTAC+AGG | - | chr8.1:11633716-11633735 | None:intergenic | 40.0% |
| !! | AGGTTGATTTGACTTGATGC+AGG | + | chr8.1:11633269-11633288 | MS.gene060801:intron | 40.0% |
| !! | AGTATCTTGGTTTGGCTTTG+GGG | + | chr8.1:11633577-11633596 | MS.gene060801:intron | 40.0% |
| !! | GAAGTATCTTGGTTTGGCTT+TGG | + | chr8.1:11633575-11633594 | MS.gene060801:intron | 40.0% |
| !! | TGAGAAGCGTTTGATGTCTA+CGG | + | chr8.1:11635272-11635291 | MS.gene060801:CDS | 40.0% |
| ACTGTCATGGCAAGATGTTC+AGG | + | chr8.1:11633389-11633408 | MS.gene060801:CDS | 45.0% | |
| AGAAAGGGAGGACAAAGTGA+AGG | + | chr8.1:11632772-11632791 | MS.gene060801:intron | 45.0% | |
| AGCTACTGCCTAACTAGCTA+GGG | - | chr8.1:11633683-11633702 | None:intergenic | 45.0% | |
| ATGTAGCAGAGTTGTTCAGC+AGG | - | chr8.1:11632235-11632254 | None:intergenic | 45.0% | |
| CAACAACTGTCAATTGGGCT+AGG | + | chr8.1:11634145-11634164 | MS.gene060801:intron | 45.0% | |
| CAACCCTTTCCTCAGTAACA+TGG | - | chr8.1:11634501-11634520 | None:intergenic | 45.0% | |
| CAAGGCATATAGAGAAAGGG+AGG | + | chr8.1:11632760-11632779 | MS.gene060801:intron | 45.0% | |
| CACCCATGTTACTGAGGAAA+GGG | + | chr8.1:11634495-11634514 | MS.gene060801:CDS | 45.0% | |
| CATAACCTAGCTAGGGTTTC+TGG | + | chr8.1:11633527-11633546 | MS.gene060801:intron | 45.0% | |
| CTAGCCCAATTGACAGTTGT+TGG | - | chr8.1:11634147-11634166 | None:intergenic | 45.0% | |
| GAAATAGTGACCGTTCGATG+TGG | + | chr8.1:11633318-11633337 | MS.gene060801:CDS | 45.0% | |
| GCTTCTCTGTGACTGATATC+AGG | - | chr8.1:11634974-11634993 | None:intergenic | 45.0% | |
| GGAAGAGATTCAGAGGATCA+AGG | + | chr8.1:11634940-11634959 | MS.gene060801:CDS | 45.0% | |
| GTGGTCACTGCACAAATCTA+TGG | + | chr8.1:11633337-11633356 | MS.gene060801:CDS | 45.0% | |
| TATGCAGGGAAGAGATTCAG+AGG | + | chr8.1:11634933-11634952 | MS.gene060801:intron | 45.0% | |
| TTCTCTCTTTCTGGGCTTGA+TGG | + | chr8.1:11632591-11632610 | MS.gene060801:intron | 45.0% | |
| !! | TCAGTATGGTTTGGCTTGGT+GGG | - | chr8.1:11633785-11633804 | None:intergenic | 45.0% |
| !! | TTCAGTATGGTTTGGCTTGG+TGG | - | chr8.1:11633786-11633805 | None:intergenic | 45.0% |
| !! | ATATTTAAATTTAAATAGAT+AGG | - | chr8.1:11634569-11634588 | None:intergenic | 5.0% |
| !!! | ATATTTTTTATAATAAAGAT+TGG | - | chr8.1:11633989-11634008 | None:intergenic | 5.0% |
| !!! | TTTTGTTTATTATATATTTT+TGG | + | chr8.1:11634094-11634113 | MS.gene060801:intron | 5.0% |
| AATTTCCAGCTCCCGAGAAG+AGG | + | chr8.1:11634770-11634789 | MS.gene060801:intron | 50.0% | |
| ACCAACCACCCATGTTACTG+AGG | + | chr8.1:11634489-11634508 | MS.gene060801:CDS | 50.0% | |
| AGGTACACGTTGCCTCTTCT+CGG | - | chr8.1:11634785-11634804 | None:intergenic | 50.0% | |
| CAGCTACTGCCTAACTAGCT+AGG | - | chr8.1:11633684-11633703 | None:intergenic | 50.0% | |
| CCACCCATGTTACTGAGGAA+AGG | + | chr8.1:11634494-11634513 | MS.gene060801:CDS | 50.0% | |
| CCACTCCCAAATGCAACGAT+AGG | + | chr8.1:11634449-11634468 | MS.gene060801:CDS | 50.0% | |
| CCATGACAGTGACTGAAACG+CGG | - | chr8.1:11633379-11633398 | None:intergenic | 50.0% | |
| CCTATCGTTGCATTTGGGAG+TGG | - | chr8.1:11634452-11634471 | None:intergenic | 50.0% | |
| CCTTTCCTCAGTAACATGGG+TGG | - | chr8.1:11634497-11634516 | None:intergenic | 50.0% | |
| GAGTCAAGTCTCAATCTCCC+TGG | + | chr8.1:11632624-11632643 | MS.gene060801:intron | 50.0% | |
| TATGGCGGCTTACTTACAGG+TGG | - | chr8.1:11633713-11633732 | None:intergenic | 50.0% | |
| TCCTCAGTAACATGGGTGGT+TGG | - | chr8.1:11634493-11634512 | None:intergenic | 50.0% | |
| TCTGGATTCATGCAGTGGCT+AGG | - | chr8.1:11634409-11634428 | None:intergenic | 50.0% | |
| TGAGCTAGCCCTAGCTAGTT+AGG | + | chr8.1:11633672-11633691 | MS.gene060801:intron | 50.0% | |
| TGTGCAGTGACCACATCGAA+CGG | - | chr8.1:11633331-11633350 | None:intergenic | 50.0% | |
| !! | ACTACTAGCTAGGGGGTGTT+TGG | - | chr8.1:11633931-11633950 | None:intergenic | 50.0% |
| !! | ATGGTTTGGCTTGGTGGGTT+AGG | - | chr8.1:11633780-11633799 | None:intergenic | 50.0% |
| CCGCGTTTCAGTCACTGTCA+TGG | + | chr8.1:11633376-11633395 | MS.gene060801:CDS | 55.0% | |
| GGGAGGACAAAGTGAAGGTG+TGG | + | chr8.1:11632777-11632796 | MS.gene060801:intron | 55.0% | |
| GGTACACGTTGCCTCTTCTC+GGG | - | chr8.1:11634784-11634803 | None:intergenic | 55.0% | |
| TGACAGTGACTGAAACGCGG+CGG | - | chr8.1:11633376-11633395 | None:intergenic | 55.0% | |
| !! | CTAGCTAGGGCTAGCTCATC+AGG | - | chr8.1:11633670-11633689 | None:intergenic | 55.0% |
| !! | AGGGGGTGTTTGGCTGGATG+AGG | - | chr8.1:11633921-11633940 | None:intergenic | 60.0% |
| !! | CTAGCTAGGGGGTGTTTGGC+TGG | - | chr8.1:11633927-11633946 | None:intergenic | 60.0% |
| CGTTGCCTCTTCTCGGGAGC+TGG | - | chr8.1:11634778-11634797 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 11632205 | 11635314 | 11632205 | ID=MS.gene060801 |
| chr8.1 | mRNA | 11632205 | 11635314 | 11632205 | ID=MS.gene060801.t1;Parent=MS.gene060801 |
| chr8.1 | exon | 11632205 | 11632285 | 11632205 | ID=MS.gene060801.t1.exon1;Parent=MS.gene060801.t1 |
| chr8.1 | CDS | 11632205 | 11632285 | 11632205 | ID=cds.MS.gene060801.t1;Parent=MS.gene060801.t1 |
| chr8.1 | exon | 11633291 | 11633410 | 11633291 | ID=MS.gene060801.t1.exon2;Parent=MS.gene060801.t1 |
| chr8.1 | CDS | 11633291 | 11633410 | 11633291 | ID=cds.MS.gene060801.t1;Parent=MS.gene060801.t1 |
| chr8.1 | exon | 11634403 | 11634529 | 11634403 | ID=MS.gene060801.t1.exon3;Parent=MS.gene060801.t1 |
| chr8.1 | CDS | 11634403 | 11634529 | 11634403 | ID=cds.MS.gene060801.t1;Parent=MS.gene060801.t1 |
| chr8.1 | exon | 11634779 | 11634827 | 11634779 | ID=MS.gene060801.t1.exon4;Parent=MS.gene060801.t1 |
| chr8.1 | CDS | 11634779 | 11634827 | 11634779 | ID=cds.MS.gene060801.t1;Parent=MS.gene060801.t1 |
| chr8.1 | exon | 11634940 | 11635015 | 11634940 | ID=MS.gene060801.t1.exon5;Parent=MS.gene060801.t1 |
| chr8.1 | CDS | 11634940 | 11635015 | 11634940 | ID=cds.MS.gene060801.t1;Parent=MS.gene060801.t1 |
| chr8.1 | exon | 11635100 | 11635168 | 11635100 | ID=MS.gene060801.t1.exon6;Parent=MS.gene060801.t1 |
| chr8.1 | CDS | 11635100 | 11635168 | 11635100 | ID=cds.MS.gene060801.t1;Parent=MS.gene060801.t1 |
| chr8.1 | exon | 11635267 | 11635314 | 11635267 | ID=MS.gene060801.t1.exon7;Parent=MS.gene060801.t1 |
| chr8.1 | CDS | 11635267 | 11635314 | 11635267 | ID=cds.MS.gene060801.t1;Parent=MS.gene060801.t1 |
| Gene Sequence |
| Protein sequence |
