Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074497.t1 | XP_003618118.2 | 93.5 | 1003 | 41 | 7 | 3 | 984 | 2 | 1001 | 0.00E+00 | 1770 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074497.t1 | Q9HGL2 | 28.0 | 414 | 226 | 12 | 4 | 415 | 2 | 345 | 7.1e-19 | 97.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074497.t1 | G7KFG0 | 93.5 | 1003 | 41 | 7 | 3 | 984 | 2 | 1001 | 0.0e+00 | 1770.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074497 | MS.gene071437 | PPI |
| MS.gene074497 | MS.gene023295 | PPI |
| MS.gene074497 | MS.gene08324 | PPI |
| MS.gene074497 | MS.gene34936 | PPI |
| MS.gene074497 | MS.gene071438 | PPI |
| MS.gene074497 | MS.gene071439 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074497.t1 | MTR_5g099170 | 93.519 | 1003 | 41 | 7 | 3 | 984 | 2 | 1001 | 0.0 | 1828 |
| MS.gene074497.t1 | MTR_1g018480 | 78.446 | 798 | 109 | 8 | 188 | 984 | 28 | 763 | 0.0 | 1213 |
| MS.gene074497.t1 | MTR_3g115640 | 41.726 | 846 | 428 | 19 | 115 | 947 | 271 | 1064 | 2.53e-174 | 540 |
| MS.gene074497.t1 | MTR_3g115640 | 72.072 | 111 | 30 | 1 | 10 | 120 | 5 | 114 | 1.63e-41 | 166 |
| MS.gene074497.t1 | MTR_4g132840 | 39.326 | 89 | 54 | 0 | 6 | 94 | 10 | 98 | 7.16e-13 | 72.8 |
| MS.gene074497.t1 | MTR_3g054130 | 37.079 | 89 | 56 | 0 | 6 | 94 | 13 | 101 | 2.25e-12 | 71.2 |
| MS.gene074497.t1 | MTR_2g025180 | 42.500 | 80 | 46 | 0 | 15 | 94 | 14 | 93 | 2.48e-12 | 71.2 |
| MS.gene074497.t1 | MTR_5g093720 | 36.782 | 87 | 55 | 0 | 6 | 92 | 10 | 96 | 1.71e-11 | 67.8 |
| MS.gene074497.t1 | MTR_5g093720 | 37.647 | 85 | 53 | 0 | 6 | 90 | 10 | 94 | 2.41e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074497.t1 | AT1G21630 | 44.158 | 1087 | 441 | 34 | 13 | 980 | 11 | 1050 | 0.0 | 692 |
| MS.gene074497.t1 | AT1G21630 | 45.609 | 1002 | 396 | 28 | 13 | 903 | 11 | 974 | 0.0 | 690 |
| MS.gene074497.t1 | AT1G20760 | 42.226 | 1087 | 443 | 32 | 10 | 984 | 6 | 1019 | 0.0 | 678 |
| MS.gene074497.t1 | AT1G21630 | 42.972 | 1117 | 440 | 36 | 13 | 980 | 11 | 1079 | 0.0 | 674 |
| MS.gene074497.t1 | AT1G21630 | 44.283 | 1032 | 395 | 30 | 13 | 903 | 11 | 1003 | 0.0 | 672 |
| MS.gene074497.t1 | AT4G05520 | 40.741 | 81 | 48 | 0 | 14 | 94 | 19 | 99 | 2.72e-13 | 74.3 |
| MS.gene074497.t1 | AT4G05520 | 40.741 | 81 | 48 | 0 | 14 | 94 | 19 | 99 | 2.79e-13 | 74.3 |
| MS.gene074497.t1 | AT3G20290 | 38.202 | 89 | 55 | 0 | 2 | 90 | 6 | 94 | 4.98e-13 | 73.6 |
| MS.gene074497.t1 | AT3G20290 | 38.202 | 89 | 55 | 0 | 2 | 90 | 6 | 94 | 4.98e-13 | 73.6 |
| MS.gene074497.t1 | AT3G20290 | 38.202 | 89 | 55 | 0 | 2 | 90 | 6 | 94 | 4.98e-13 | 73.6 |
Find 259 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCCAAGACTGGAATTT+TGG | 0.083383 | 5.4:-78422503 | None:intergenic |
| TTAGGCGACGCTACAAATTT+TGG | 0.153429 | 5.4:-78426896 | None:intergenic |
| TCTGCCATTGTTCCTGTATC+TGG | 0.185414 | 5.4:+78421566 | MS.gene074497:CDS |
| AACTGAATCCACTGGTCTTC+TGG | 0.214249 | 5.4:-78430358 | None:intergenic |
| CCCAATCAGCAGCTCCTTCT+TGG | 0.235708 | 5.4:-78425411 | None:intergenic |
| GACAACTATTTCTTTAGTTC+TGG | 0.248675 | 5.4:+78430281 | MS.gene074497:CDS |
| CCAGATGAAGTGGGCATATT+AGG | 0.254876 | 5.4:-78421722 | None:intergenic |
| CTAGAAAAGGATCTGATAAT+TGG | 0.254950 | 5.4:+78430651 | MS.gene074497:CDS |
| ATGATGATATTGATTCAGTT+TGG | 0.264630 | 5.4:+78428985 | MS.gene074497:CDS |
| GACTCGGATCCCTTTGGCTC+TGG | 0.272802 | 5.4:+78430596 | MS.gene074497:CDS |
| TGCTCTCTCTCAGAGAGTTT+TGG | 0.274800 | 5.4:+78422118 | MS.gene074497:CDS |
| GTGTCAAAGGTTCCCCAATT+AGG | 0.276461 | 5.4:-78428960 | None:intergenic |
| TCTGATTTATCATCACTCTT+AGG | 0.279359 | 5.4:-78426914 | None:intergenic |
| GCAGCTTCCTCTGCCTTCCC+TGG | 0.282754 | 5.4:+78421308 | MS.gene074497:CDS |
| AATGCAGCTTTAACCATTTC+AGG | 0.285045 | 5.4:-78421089 | None:intergenic |
| ATATCAGGAAGAATGTTATT+TGG | 0.285131 | 5.4:-78422198 | None:intergenic |
| ATCCTTGTGGAGAATTGTTT+TGG | 0.291045 | 5.4:-78421538 | None:intergenic |
| CTTGCGCATCATCTTGATTA+CGG | 0.292981 | 5.4:-78427114 | None:intergenic |
| TGATGATATTGATTCAGTTT+GGG | 0.312070 | 5.4:+78428986 | MS.gene074497:CDS |
| CCTAATATGCCCACTTCATC+TGG | 0.322984 | 5.4:+78421722 | MS.gene074497:CDS |
| TTGCGCATCATCTTGATTAC+GGG | 0.327200 | 5.4:-78427113 | None:intergenic |
| AAGATTTGGTGCAGTGGATT+GGG | 0.327830 | 5.4:-78421174 | None:intergenic |
| CAAGATTTGGTGCAGTGGAT+TGG | 0.341717 | 5.4:-78421175 | None:intergenic |
| ACCAGTCCTTAGGCCTTTGC+GGG | 0.342679 | 5.4:-78430427 | None:intergenic |
| GAAATATACAAGAGTATTCA+TGG | 0.344953 | 5.4:+78421823 | MS.gene074497:CDS |
| TGGACTTCCAGTTAGATTGC+AGG | 0.345688 | 5.4:+78421742 | MS.gene074497:CDS |
| CCAGTAGTCGTGGGTATATC+AGG | 0.346839 | 5.4:-78422213 | None:intergenic |
| GAACCAGCATGCCTCGGTTC+AGG | 0.352210 | 5.4:+78421697 | MS.gene074497:CDS |
| CTGCTTGCAAATGGACTATT+AGG | 0.353285 | 5.4:-78427019 | None:intergenic |
| CCTCCCTGTGTCGCTCCATT+AGG | 0.353651 | 5.4:-78422152 | None:intergenic |
| GGTCCCCTTGGTCCAAGATT+TGG | 0.355694 | 5.4:-78421188 | None:intergenic |
| AGTGAGGTCTGCAAAGAATC+AGG | 0.355697 | 5.4:-78421620 | None:intergenic |
| ACATCAGTCTGAGTCATTCT+TGG | 0.356881 | 5.4:-78421797 | None:intergenic |
| CAATCCACTGCACCAAATCT+TGG | 0.357449 | 5.4:+78421176 | MS.gene074497:CDS |
| AATGAACGGTGCAAGAAGTA+TGG | 0.359913 | 5.4:+78424401 | MS.gene074497:CDS |
| ACCTCAGACTACAAATGAAC+AGG | 0.361971 | 5.4:+78426940 | MS.gene074497:CDS |
| GGCTGTGAACGCAAAAGCTT+TGG | 0.363833 | 5.4:+78426862 | MS.gene074497:CDS |
| CAATTCTGACTTTGATGAAC+TGG | 0.368165 | 5.4:+78424367 | MS.gene074497:CDS |
| TTATTTCCGTCGTGCCGATT+TGG | 0.368421 | 5.4:+78420719 | MS.gene074497:CDS |
| GACTGATTTCCCCAAGTTAC+GGG | 0.369318 | 5.4:-78422258 | None:intergenic |
| CGAGGAACTTGTTTCTTAGT+TGG | 0.370132 | 5.4:+78421888 | MS.gene074497:CDS |
| TCCTCTCAGCTACCAGTTAG+AGG | 0.375266 | 5.4:+78421356 | MS.gene074497:CDS |
| CTACCCACTCAAGGACTTCC+TGG | 0.376304 | 5.4:+78421275 | MS.gene074497:CDS |
| ACAGAATCCTGCAATCTAAC+TGG | 0.385097 | 5.4:-78421749 | None:intergenic |
| TTGGATTGCACTGTACCTAA+TGG | 0.391952 | 5.4:+78422137 | MS.gene074497:CDS |
| TCCTCTGCCTTCCCTGGGTA+TGG | 0.392175 | 5.4:+78421314 | MS.gene074497:CDS |
| GAAGCTGCAGGGCGAGGTCC+AGG | 0.393251 | 5.4:-78421293 | None:intergenic |
| AGTAAGCCATCTGATACTTC+TGG | 0.396585 | 5.4:+78421446 | MS.gene074497:CDS |
| AGAACTTGAGAAAGAAATAG+TGG | 0.397031 | 5.4:+78422987 | MS.gene074497:CDS |
| AACCAGTCCTTAGGCCTTTG+CGG | 0.408355 | 5.4:-78430428 | None:intergenic |
| TTTCTTTAGTTCTGGAGACC+TGG | 0.408705 | 5.4:+78430289 | MS.gene074497:CDS |
| TGGGAAAATCACCGGGGAAC+AGG | 0.411070 | 5.4:+78421865 | MS.gene074497:CDS |
| TTTGATGACTCGGATCCCTT+TGG | 0.411828 | 5.4:+78430590 | MS.gene074497:CDS |
| GGAGGGACAGCAGCCGGCCT+TGG | 0.413740 | 5.4:-78422445 | None:intergenic |
| ACTCGGATCCCTTTGGCTCT+GGG | 0.413782 | 5.4:+78430597 | MS.gene074497:CDS |
| CCAAGAAGGAGCTGCTGATT+GGG | 0.414207 | 5.4:+78425411 | MS.gene074497:CDS |
| GAGGGAGCCAGAGTTCTATT+AGG | 0.415142 | 5.4:+78421588 | MS.gene074497:CDS |
| GGCTTCCTCCGTTGTCAACT+TGG | 0.415490 | 5.4:-78424052 | None:intergenic |
| TCTGACATTCGAAAGACTTC+CGG | 0.415671 | 5.4:+78427076 | MS.gene074497:CDS |
| TGGGATAAGCTTGAAGATAA+AGG | 0.418203 | 5.4:+78425442 | MS.gene074497:CDS |
| ATCACCACAGTCCCGTAACT+TGG | 0.419961 | 5.4:+78422247 | MS.gene074497:CDS |
| CCCTGTTCATTTGTAGTCTG+AGG | 0.423333 | 5.4:-78426941 | None:intergenic |
| TGCTGATTGGGATGAGGATT+GGG | 0.423748 | 5.4:+78425423 | MS.gene074497:CDS |
| TTACAGGAGAGAGAGCTTGA+TGG | 0.424029 | 5.4:+78430251 | MS.gene074497:intron |
| CTTGGTGGCCGACCTGCTGT+AGG | 0.424041 | 5.4:-78422427 | None:intergenic |
| GTTTATAACAAAAGTGATGA+TGG | 0.425078 | 5.4:+78426980 | MS.gene074497:CDS |
| CTGCTGATTGGGATGAGGAT+TGG | 0.428599 | 5.4:+78425422 | MS.gene074497:CDS |
| GTCTCTTTCTTCCAAGGCTC+CGG | 0.431818 | 5.4:+78420774 | MS.gene074497:CDS |
| GGGACAGCAGCCGGCCTTGG+TGG | 0.433007 | 5.4:-78422442 | None:intergenic |
| TCCAAGAAGGAGCTGCTGAT+TGG | 0.435562 | 5.4:+78425410 | MS.gene074497:CDS |
| GAAATCCAAAATTCCAGTCT+TGG | 0.436376 | 5.4:+78422498 | MS.gene074497:CDS |
| AGCAGGTCGGCCACCAAGGC+CGG | 0.439433 | 5.4:+78422432 | MS.gene074497:CDS |
| TGACTGATTTCCCCAAGTTA+CGG | 0.443430 | 5.4:-78422259 | None:intergenic |
| GCGCGAACTCACTCCTGAAA+TGG | 0.448079 | 5.4:+78421076 | MS.gene074497:CDS |
| TTCTTTAGTTCTGGAGACCT+GGG | 0.448365 | 5.4:+78430290 | MS.gene074497:CDS |
| CTCTGGCTCCCTCCAGATAC+AGG | 0.448704 | 5.4:-78421578 | None:intergenic |
| TGCAAAGCCCACGACATTAG+TGG | 0.449716 | 5.4:+78424430 | MS.gene074497:CDS |
| GAAGATAAATATAAGCAAGT+TGG | 0.450494 | 5.4:+78424018 | MS.gene074497:CDS |
| TCATTCTTGGCCATGGAGAT+TGG | 0.452820 | 5.4:-78421784 | None:intergenic |
| GATCTGAGGAGCAGGAATCT+TGG | 0.455601 | 5.4:-78421129 | None:intergenic |
| ACGGGACTAGTTCCTCTAAC+TGG | 0.457103 | 5.4:-78421368 | None:intergenic |
| AGATTGCAGGATTCTGTGTC+AGG | 0.460277 | 5.4:+78421755 | MS.gene074497:CDS |
| GAAAATCAAACTCCTAGAAA+AGG | 0.462287 | 5.4:+78430638 | MS.gene074497:CDS |
| CAGCTTCCTCTGCCTTCCCT+GGG | 0.463100 | 5.4:+78421309 | MS.gene074497:CDS |
| ATGTTATTTGGAAGTATACT+TGG | 0.465197 | 5.4:-78422186 | None:intergenic |
| GCAGATGTTGTAATTGCAAC+GGG | 0.468123 | 5.4:-78421386 | None:intergenic |
| GCAGAGGAAGCTGCAGGGCG+AGG | 0.469441 | 5.4:-78421299 | None:intergenic |
| GGGAAGGCAGAGGAAGCTGC+AGG | 0.470047 | 5.4:-78421305 | None:intergenic |
| GAGCTGAAAAGTGGGGTGCT+TGG | 0.470554 | 5.4:-78430395 | None:intergenic |
| ATACCAAGGGATTGTCAAGT+TGG | 0.472782 | 5.4:+78424212 | MS.gene074497:CDS |
| GGTGGTTGTGCTTCCCGAGC+AGG | 0.473964 | 5.4:-78430512 | None:intergenic |
| AGGGATTGTCAAGTTGGAAC+AGG | 0.474706 | 5.4:+78424218 | MS.gene074497:CDS |
| ATGAGATGCTTCTCCAAGAC+TGG | 0.476986 | 5.4:-78422511 | None:intergenic |
| AATATCATCATTTGTGTCAA+AGG | 0.479869 | 5.4:-78428973 | None:intergenic |
| AGCAACAGAAGCTGATAAGA+AGG | 0.481859 | 5.4:+78422585 | MS.gene074497:CDS |
| TAGTGCATCTTTACCTGCTC+GGG | 0.482506 | 5.4:+78430499 | MS.gene074497:CDS |
| GGTTCTGATTCACTGCCGGC+TGG | 0.483197 | 5.4:-78421679 | None:intergenic |
| CCTGATATACCCACGACTAC+TGG | 0.485235 | 5.4:+78422213 | MS.gene074497:CDS |
| CATCAAGGGATGACTGGATC+TGG | 0.485293 | 5.4:+78422388 | MS.gene074497:CDS |
| TCAGATGGAGGGACAGCAGC+CGG | 0.485842 | 5.4:-78422451 | None:intergenic |
| GCAAAATTGATCTGAGGAGC+AGG | 0.486606 | 5.4:-78421137 | None:intergenic |
| GCATCGAACAGATCCACATT+AGG | 0.489829 | 5.4:-78420696 | None:intergenic |
| GAGAGAGAGCTTGATGGAGC+TGG | 0.490771 | 5.4:+78430257 | MS.gene074497:CDS |
| TCACCACAGTCCCGTAACTT+GGG | 0.491125 | 5.4:+78422248 | MS.gene074497:CDS |
| CGGCTTCGACACCGCTGATA+CGG | 0.491132 | 5.4:-78420752 | None:intergenic |
| ACATTAGTGGAGCTACCCTT+TGG | 0.492253 | 5.4:+78424443 | MS.gene074497:CDS |
| GTCTGAGTCATTCTTGGCCA+TGG | 0.492406 | 5.4:-78421791 | None:intergenic |
| AAGTCCTTGAGTGGGTAGAC+TGG | 0.493318 | 5.4:-78421270 | None:intergenic |
| CAATCGTCTTAACGAGATCA+TGG | 0.493342 | 5.4:+78423864 | MS.gene074497:CDS |
| ACAAATCAGAGTGGTTTCCT+AGG | 0.493644 | 5.4:+78421002 | MS.gene074497:CDS |
| CTCAGCCAACTCCATTAGTA+AGG | 0.494821 | 5.4:+78421228 | MS.gene074497:CDS |
| TGATTTGGAAGAGGTCCCCT+TGG | 0.497681 | 5.4:-78421200 | None:intergenic |
| GCAGGAATCTTGGATGCAGC+TGG | 0.500240 | 5.4:-78421119 | None:intergenic |
| CCGATAGTACTGCTTGCAAA+TGG | 0.504423 | 5.4:-78427028 | None:intergenic |
| AAGTAGACAGAGATAGAGAT+GGG | 0.506112 | 5.4:+78421846 | MS.gene074497:CDS |
| GTAACTTGGGGAAATCAGTC+AGG | 0.510887 | 5.4:+78422261 | MS.gene074497:CDS |
| AAAGGTGTTCAACAACATCA+AGG | 0.512816 | 5.4:+78422373 | MS.gene074497:intron |
| ACGGCCGTCACGATCCAAAT+CGG | 0.514554 | 5.4:-78420733 | None:intergenic |
| CAATTCCCCGCAAAGGCCTA+AGG | 0.515130 | 5.4:+78430421 | MS.gene074497:CDS |
| AGCCACATTCCGTGACATAC+AGG | 0.515862 | 5.4:+78424071 | MS.gene074497:CDS |
| CAACAACATCAAGGGATGAC+TGG | 0.516067 | 5.4:+78422382 | MS.gene074497:CDS |
| GCCATTGTTCCTGTATCTGG+AGG | 0.518118 | 5.4:+78421569 | MS.gene074497:CDS |
| TGCTGGTTCTGATTCACTGC+CGG | 0.518194 | 5.4:-78421683 | None:intergenic |
| TGGTGGTCCTAATAGAACTC+TGG | 0.519340 | 5.4:-78421595 | None:intergenic |
| GAATTGCTTGAGCTGAAAAG+TGG | 0.520785 | 5.4:-78430404 | None:intergenic |
| GCAGCTCCTTCTTGGATACC+AGG | 0.522331 | 5.4:-78425403 | None:intergenic |
| GATAGAGATGGGAAAATCAC+CGG | 0.522378 | 5.4:+78421857 | MS.gene074497:CDS |
| TGGTCCAAGATTTGGTGCAG+TGG | 0.524715 | 5.4:-78421180 | None:intergenic |
| TATCATTATCTTGATCAGAT+AGG | 0.525293 | 5.4:-78422092 | None:intergenic |
| CAAGTTCCTCGCCTGTTCCC+CGG | 0.525330 | 5.4:-78421876 | None:intergenic |
| GGCTGGTTCTGCTGAAGATG+TGG | 0.527341 | 5.4:-78421662 | None:intergenic |
| GATGATATTGATTCAGTTTG+GGG | 0.529758 | 5.4:+78428987 | MS.gene074497:CDS |
| TTCGCGCTTGCTCTGTGCGA+CGG | 0.531747 | 5.4:-78421060 | None:intergenic |
| CCATCTGATACTTCTGGCAA+TGG | 0.531884 | 5.4:+78421452 | MS.gene074497:CDS |
| GAAGCCGTCTCTTTCTTCCA+AGG | 0.535408 | 5.4:+78420768 | MS.gene074497:CDS |
| GCGCCTGAACCGAGGCATGC+TGG | 0.535855 | 5.4:-78421700 | None:intergenic |
| ATAGTGCATCTTTACCTGCT+CGG | 0.536021 | 5.4:+78430498 | MS.gene074497:CDS |
| AACTGGAAGTCCAGATGAAG+TGG | 0.536635 | 5.4:-78421732 | None:intergenic |
| CCTAAAAGGCCCAGAGCCAA+AGG | 0.538643 | 5.4:-78430606 | None:intergenic |
| CGGACAGAATCAAATCGTAC+TGG | 0.538647 | 5.4:-78430533 | None:intergenic |
| GTTCCAACTTGACAATCCCT+TGG | 0.538804 | 5.4:-78424215 | None:intergenic |
| TGTACCTAATGGAGCGACAC+AGG | 0.539980 | 5.4:+78422148 | MS.gene074497:CDS |
| CGAGGCATGTTGCCATACCC+AGG | 0.540224 | 5.4:-78421326 | None:intergenic |
| GCTGTCCCTCCATCTGATGA+AGG | 0.542889 | 5.4:+78422457 | MS.gene074497:CDS |
| ATGGTTAAAGCTGCATTGTA+TGG | 0.543633 | 5.4:+78421095 | MS.gene074497:CDS |
| CACCTGTATGTCACGGAATG+TGG | 0.543777 | 5.4:-78424073 | None:intergenic |
| TACTATCGGAAGTCCGCATA+GGG | 0.544690 | 5.4:+78427042 | MS.gene074497:CDS |
| ACGGGACTGTGGTGATTGAC+AGG | 0.544791 | 5.4:-78422240 | None:intergenic |
| GAAGTAGACAGAGATAGAGA+TGG | 0.545228 | 5.4:+78421845 | MS.gene074497:CDS |
| TTGGTTAGGCTGAGATGAGG+TGG | 0.547246 | 5.4:-78421519 | None:intergenic |
| CGTTAAGACGATTGTCGCAT+CGG | 0.548638 | 5.4:-78423855 | None:intergenic |
| AGCAGATGAAGTAGGTGCGA+GGG | 0.552013 | 5.4:-78421423 | None:intergenic |
| CTGCAAAGAATCAGGGGTGG+TGG | 0.555519 | 5.4:-78421612 | None:intergenic |
| ATCATCAAAACTGAATCCAC+TGG | 0.556026 | 5.4:-78430366 | None:intergenic |
| TTGGTGGCCGACCTGCTGTA+GGG | 0.556959 | 5.4:-78422426 | None:intergenic |
| AGATTTGGTGCAGTGGATTG+GGG | 0.561264 | 5.4:-78421173 | None:intergenic |
| GTGAGGTCTGCAAAGAATCA+GGG | 0.561557 | 5.4:-78421619 | None:intergenic |
| CCCCGCAAAGGCCTAAGGAC+TGG | 0.561681 | 5.4:+78430426 | MS.gene074497:CDS |
| AATTGCTTGAGCTGAAAAGT+GGG | 0.564157 | 5.4:-78430403 | None:intergenic |
| GAGTTCCTTCATCAGATGGA+GGG | 0.565966 | 5.4:-78422462 | None:intergenic |
| AGCAGATGTTGTAATTGCAA+CGG | 0.567076 | 5.4:-78421387 | None:intergenic |
| AGAGGCCTTACTAATGGAGT+TGG | 0.567196 | 5.4:-78421233 | None:intergenic |
| TTTCTTGCACCTGTATGTCA+CGG | 0.569492 | 5.4:-78424080 | None:intergenic |
| GCAAAGGCCTAAGGACTGGT+TGG | 0.571718 | 5.4:+78430430 | MS.gene074497:CDS |
| AAATCACCGGGGAACAGGCG+AGG | 0.571813 | 5.4:+78421870 | MS.gene074497:CDS |
| GGGTAGCTCCACTAATGTCG+TGG | 0.572123 | 5.4:-78424438 | None:intergenic |
| TTTATAACAAAAGTGATGAT+GGG | 0.572887 | 5.4:+78426981 | MS.gene074497:CDS |
| CTGCACCAAATCTTGGACCA+AGG | 0.572913 | 5.4:+78421183 | MS.gene074497:CDS |
| CCATTTGCAAGCAGTACTAT+CGG | 0.574980 | 5.4:+78427028 | MS.gene074497:CDS |
| CTAAAAGGCCCAGAGCCAAA+GGG | 0.576310 | 5.4:-78430605 | None:intergenic |
| AAATACTGATGACACTGTAC+AGG | 0.576435 | 5.4:+78424245 | MS.gene074497:CDS |
| TGTAGAACTCTGCACGACCT+AGG | 0.577556 | 5.4:-78421019 | None:intergenic |
| AGGAGCTGCTGATTGGGATG+AGG | 0.578287 | 5.4:+78425417 | MS.gene074497:CDS |
| TGAGTTCCTTCATCAGATGG+AGG | 0.578889 | 5.4:-78422463 | None:intergenic |
| TGCACCAAATCTTGGACCAA+GGG | 0.579499 | 5.4:+78421184 | MS.gene074497:CDS |
| GTACTATCGGAAGTCCGCAT+AGG | 0.583487 | 5.4:+78427041 | MS.gene074497:CDS |
| AATCCTTTAGGCTGGCAACC+TGG | 0.583706 | 5.4:+78425385 | MS.gene074497:intron |
| ACGGGGTGAGCTATCTTCAC+CGG | 0.584518 | 5.4:-78427095 | None:intergenic |
| GACAGGTTGACCAGTAGTCG+TGG | 0.586566 | 5.4:-78422223 | None:intergenic |
| CCATTGTTCCTGTATCTGGA+GGG | 0.588409 | 5.4:+78421570 | MS.gene074497:CDS |
| TACCTCCTTAGTGATGCTAC+TGG | 0.590533 | 5.4:-78429018 | None:intergenic |
| ATAGAGATGGGAAAATCACC+GGG | 0.590747 | 5.4:+78421858 | MS.gene074497:CDS |
| CGACAACTCAACCCTACAGC+AGG | 0.591099 | 5.4:+78422415 | MS.gene074497:CDS |
| TCTTGCATATGTAGTGATCA+TGG | 0.591562 | 5.4:+78428894 | MS.gene074497:intron |
| CAATGCCAGTAGCATCACTA+AGG | 0.592229 | 5.4:+78429013 | MS.gene074497:CDS |
| GTCGTCGTCAGCGCCTAATG+TGG | 0.592825 | 5.4:+78420683 | MS.gene074497:CDS |
| GATCAAAATCCGCACTGCTG+CGG | 0.595149 | 5.4:-78430553 | None:intergenic |
| GGTGAGCTCTGACCTGAGCA+AGG | 0.596646 | 5.4:-78420812 | None:intergenic |
| CCTCAGACTACAAATGAACA+GGG | 0.596661 | 5.4:+78426941 | MS.gene074497:CDS |
| GAATCAGAACCAGCATGCCT+CGG | 0.597210 | 5.4:+78421691 | MS.gene074497:CDS |
| ACATCTTCAGCAGAACCAGC+CGG | 0.598425 | 5.4:+78421664 | MS.gene074497:CDS |
| CATTAAAACATCTTCACCAC+AGG | 0.599364 | 5.4:+78430322 | MS.gene074497:CDS |
| AAAAGATTGAATTATACCAA+GGG | 0.601242 | 5.4:+78424199 | MS.gene074497:CDS |
| CCCTCCAGATACAGGAACAA+TGG | 0.601366 | 5.4:-78421570 | None:intergenic |
| GCCATACCCAGGGAAGGCAG+AGG | 0.602262 | 5.4:-78421315 | None:intergenic |
| AGTGGATTGGGGTGTGACAG+TGG | 0.605237 | 5.4:-78421162 | None:intergenic |
| GGCTTACTAGCAGATGAAGT+AGG | 0.608782 | 5.4:-78421431 | None:intergenic |
| GGATCCGAGTCATCAAAAGC+AGG | 0.609531 | 5.4:-78430584 | None:intergenic |
| CTACAGCAGGTCGGCCACCA+AGG | 0.611350 | 5.4:+78422428 | MS.gene074497:CDS |
| TGGCAACCTGGTATCCAAGA+AGG | 0.611414 | 5.4:+78425397 | MS.gene074497:CDS |
| CAGGTCAGCACCAATCTCCA+TGG | 0.614703 | 5.4:+78421774 | MS.gene074497:CDS |
| GGAAGGCAGAGGAAGCTGCA+GGG | 0.615609 | 5.4:-78421304 | None:intergenic |
| TGCGCATCATCTTGATTACG+GGG | 0.616560 | 5.4:-78427112 | None:intergenic |
| TGGTCAAATCTCTAAATGAA+CGG | 0.619830 | 5.4:+78424387 | MS.gene074497:CDS |
| TCTGCCAGTCTACCCACTCA+AGG | 0.620326 | 5.4:+78421266 | MS.gene074497:CDS |
| TTCCCCAAGTTACGGGACTG+TGG | 0.620885 | 5.4:-78422251 | None:intergenic |
| AACAGAGTGAGTAGCAAGTG+AGG | 0.625475 | 5.4:-78421636 | None:intergenic |
| AAGGTGTTCAACAACATCAA+GGG | 0.626189 | 5.4:+78422374 | MS.gene074497:intron |
| ACTACAAATGAACAGGGAGT+AGG | 0.626388 | 5.4:+78426947 | MS.gene074497:CDS |
| CCATTGCCAGAAGTATCAGA+TGG | 0.628156 | 5.4:-78421452 | None:intergenic |
| GCTCAAGCAATTCCCCGCAA+AGG | 0.628792 | 5.4:+78430414 | MS.gene074497:CDS |
| CATATTAGGCGCCTGAACCG+AGG | 0.630352 | 5.4:-78421708 | None:intergenic |
| GGTAGCTCCACTAATGTCGT+GGG | 0.630673 | 5.4:-78424437 | None:intergenic |
| GATCTCTTCCAGAAGACCAG+TGG | 0.630983 | 5.4:+78430350 | MS.gene074497:CDS |
| GTACCTAATGGAGCGACACA+GGG | 0.632242 | 5.4:+78422149 | MS.gene074497:CDS |
| TCCAAAACAAAAGCAACCAA+AGG | 0.634034 | 5.4:+78426841 | MS.gene074497:CDS |
| AGGTCCAGGAAGTCCTTGAG+TGG | 0.634645 | 5.4:-78421279 | None:intergenic |
| CACCACAGTCCCGTAACTTG+GGG | 0.635709 | 5.4:+78422249 | MS.gene074497:CDS |
| TGGAAGAGATCAGCAGCCTG+TGG | 0.635908 | 5.4:-78430338 | None:intergenic |
| TGCCAGTAGCATCACTAAGG+AGG | 0.638921 | 5.4:+78429016 | MS.gene074497:CDS |
| GATCGTGACGGCCGTATCAG+CGG | 0.640276 | 5.4:+78420741 | MS.gene074497:CDS |
| CATGTTGCCATACCCAGGGA+AGG | 0.641769 | 5.4:-78421321 | None:intergenic |
| ATGGCAGATGAAAATCCTTG+TGG | 0.642661 | 5.4:-78421551 | None:intergenic |
| CTTAGTTGGCAATTACCAAG+AGG | 0.644602 | 5.4:+78421902 | MS.gene074497:CDS |
| GAGGCATGTTGCCATACCCA+GGG | 0.650186 | 5.4:-78421325 | None:intergenic |
| CTAATGGAGCGACACAGGGA+GGG | 0.650249 | 5.4:+78422153 | MS.gene074497:CDS |
| GATATCTGCTGATAAACATG+AGG | 0.651388 | 5.4:+78423891 | MS.gene074497:CDS |
| TAGCAGATGAAGTAGGTGCG+AGG | 0.652888 | 5.4:-78421424 | None:intergenic |
| CGTGCCGATTTGGATCGTGA+CGG | 0.655206 | 5.4:+78420729 | MS.gene074497:CDS |
| AACCAAAACAATTCTCCACA+AGG | 0.655827 | 5.4:+78421536 | MS.gene074497:CDS |
| CAGAATTGATGCGATCAGCA+CGG | 0.657300 | 5.4:-78424352 | None:intergenic |
| GTGGCAGCAAAATTGATCTG+AGG | 0.657933 | 5.4:-78421143 | None:intergenic |
| AATGAACAGGGAGTAGGCAA+CGG | 0.658714 | 5.4:+78426953 | MS.gene074497:CDS |
| TCCTCTAACTGGTAGCTGAG+AGG | 0.659362 | 5.4:-78421357 | None:intergenic |
| ACAGGTTGACCAGTAGTCGT+GGG | 0.659671 | 5.4:-78422222 | None:intergenic |
| GCACCAAATCTTGGACCAAG+GGG | 0.659970 | 5.4:+78421185 | MS.gene074497:CDS |
| GGTCCAGGAAGTCCTTGAGT+GGG | 0.661646 | 5.4:-78421278 | None:intergenic |
| TGAGGTCTGCAAAGAATCAG+GGG | 0.662290 | 5.4:-78421618 | None:intergenic |
| ACAGAATCAAATCGTACTGG+TGG | 0.662330 | 5.4:-78430530 | None:intergenic |
| GGAGCCTTGGAAGAAAGAGA+CGG | 0.664365 | 5.4:-78420772 | None:intergenic |
| GCAGATGAAGTAGGTGCGAG+GGG | 0.665000 | 5.4:-78421422 | None:intergenic |
| TGATTCTGTCCGCAGCAGTG+CGG | 0.668650 | 5.4:+78430544 | MS.gene074497:CDS |
| CACGATCCAAATCGGCACGA+CGG | 0.668945 | 5.4:-78420725 | None:intergenic |
| CCAGTCCTTAGGCCTTTGCG+GGG | 0.670167 | 5.4:-78430426 | None:intergenic |
| TTTGCAAACACAAATCAGAG+TGG | 0.673304 | 5.4:+78420993 | MS.gene074497:CDS |
| GTCTTAACGAGATCATGGAA+AGG | 0.674758 | 5.4:+78423869 | MS.gene074497:CDS |
| ATGATGCGCAAGAAACCCAA+AGG | 0.676390 | 5.4:+78427125 | MS.gene074497:CDS |
| TGTATCATCCAAGTTGACAA+CGG | 0.678444 | 5.4:+78424044 | MS.gene074497:CDS |
| AACTCAACCCTACAGCAGGT+CGG | 0.680320 | 5.4:+78422419 | MS.gene074497:CDS |
| ACTGGAAGTCCAGATGAAGT+GGG | 0.681287 | 5.4:-78421731 | None:intergenic |
| CCTAATGGAGCGACACAGGG+AGG | 0.684964 | 5.4:+78422152 | MS.gene074497:CDS |
| AGCTGAGAGGACGTTCCTCG+AGG | 0.695606 | 5.4:-78421344 | None:intergenic |
| GGGTATGGCAACATGCCTCG+AGG | 0.698796 | 5.4:+78421329 | MS.gene074497:CDS |
| ATCATCCAAGTTGACAACGG+AGG | 0.723347 | 5.4:+78424047 | MS.gene074497:CDS |
| GAATCAACAAAGTCCCTATG+CGG | 0.723875 | 5.4:-78427055 | None:intergenic |
| GGTCTGCAAAGAATCAGGGG+TGG | 0.737761 | 5.4:-78421615 | None:intergenic |
| ATTGCTTGAGCTGAAAAGTG+GGG | 0.763163 | 5.4:-78430402 | None:intergenic |
| TAGAGATGGGAAAATCACCG+GGG | 0.788722 | 5.4:+78421859 | MS.gene074497:CDS |
| TGCATATGTAGTGATCATGG+TGG | 0.810191 | 5.4:+78428897 | MS.gene074497:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 78420669 | 78430685 | 78420669 | ID=MS.gene074497 |
| chr5.4 | mRNA | 78420669 | 78430685 | 78420669 | ID=MS.gene074497.t1;Parent=MS.gene074497 |
| chr5.4 | exon | 78420669 | 78420821 | 78420669 | ID=MS.gene074497.t1.exon1;Parent=MS.gene074497.t1 |
| chr5.4 | CDS | 78420669 | 78420821 | 78420669 | ID=cds.MS.gene074497.t1;Parent=MS.gene074497.t1 |
| chr5.4 | exon | 78420984 | 78421923 | 78420984 | ID=MS.gene074497.t1.exon2;Parent=MS.gene074497.t1 |
| chr5.4 | CDS | 78420984 | 78421923 | 78420984 | ID=cds.MS.gene074497.t1;Parent=MS.gene074497.t1 |
| chr5.4 | exon | 78422070 | 78422282 | 78422070 | ID=MS.gene074497.t1.exon3;Parent=MS.gene074497.t1 |
| chr5.4 | CDS | 78422070 | 78422282 | 78422070 | ID=cds.MS.gene074497.t1;Parent=MS.gene074497.t1 |
| chr5.4 | exon | 78422377 | 78422606 | 78422377 | ID=MS.gene074497.t1.exon4;Parent=MS.gene074497.t1 |
| chr5.4 | CDS | 78422377 | 78422606 | 78422377 | ID=cds.MS.gene074497.t1;Parent=MS.gene074497.t1 |
| chr5.4 | exon | 78422982 | 78423056 | 78422982 | ID=MS.gene074497.t1.exon5;Parent=MS.gene074497.t1 |
| chr5.4 | CDS | 78422982 | 78423056 | 78422982 | ID=cds.MS.gene074497.t1;Parent=MS.gene074497.t1 |
| chr5.4 | exon | 78423841 | 78423912 | 78423841 | ID=MS.gene074497.t1.exon6;Parent=MS.gene074497.t1 |
| chr5.4 | CDS | 78423841 | 78423912 | 78423841 | ID=cds.MS.gene074497.t1;Parent=MS.gene074497.t1 |
| chr5.4 | exon | 78423994 | 78424092 | 78423994 | ID=MS.gene074497.t1.exon7;Parent=MS.gene074497.t1 |
| chr5.4 | CDS | 78423994 | 78424092 | 78423994 | ID=cds.MS.gene074497.t1;Parent=MS.gene074497.t1 |
| chr5.4 | exon | 78424195 | 78424266 | 78424195 | ID=MS.gene074497.t1.exon8;Parent=MS.gene074497.t1 |
| chr5.4 | CDS | 78424195 | 78424266 | 78424195 | ID=cds.MS.gene074497.t1;Parent=MS.gene074497.t1 |
| chr5.4 | exon | 78424350 | 78424464 | 78424350 | ID=MS.gene074497.t1.exon9;Parent=MS.gene074497.t1 |
| chr5.4 | CDS | 78424350 | 78424464 | 78424350 | ID=cds.MS.gene074497.t1;Parent=MS.gene074497.t1 |
| chr5.4 | exon | 78425395 | 78425463 | 78425395 | ID=MS.gene074497.t1.exon10;Parent=MS.gene074497.t1 |
| chr5.4 | CDS | 78425395 | 78425463 | 78425395 | ID=cds.MS.gene074497.t1;Parent=MS.gene074497.t1 |
| chr5.4 | exon | 78426789 | 78427146 | 78426789 | ID=MS.gene074497.t1.exon11;Parent=MS.gene074497.t1 |
| chr5.4 | CDS | 78426789 | 78427146 | 78426789 | ID=cds.MS.gene074497.t1;Parent=MS.gene074497.t1 |
| chr5.4 | exon | 78428908 | 78429037 | 78428908 | ID=MS.gene074497.t1.exon12;Parent=MS.gene074497.t1 |
| chr5.4 | CDS | 78428908 | 78429037 | 78428908 | ID=cds.MS.gene074497.t1;Parent=MS.gene074497.t1 |
| chr5.4 | exon | 78430257 | 78430685 | 78430257 | ID=MS.gene074497.t1.exon13;Parent=MS.gene074497.t1 |
| chr5.4 | CDS | 78430257 | 78430685 | 78430257 | ID=cds.MS.gene074497.t1;Parent=MS.gene074497.t1 |
| Gene Sequence |
| Protein sequence |
