Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023295.t1 | RHN42370.1 | 98.8 | 563 | 7 | 0 | 1 | 563 | 1 | 563 | 2.8e-309 | 1070.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023295.t1 | Q8LBH2 | 70.4 | 584 | 139 | 9 | 1 | 563 | 1 | 571 | 1.1e-210 | 734.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023295.t1 | A0A396GMV6 | 98.8 | 563 | 7 | 0 | 1 | 563 | 1 | 563 | 2.0e-309 | 1070.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023295 | MS.gene58033 | PPI |
| MS.gene75800 | MS.gene023295 | PPI |
| MS.gene023295 | MS.gene58034 | PPI |
| MS.gene074497 | MS.gene023295 | PPI |
| MS.gene023295 | MS.gene036713 | PPI |
| MS.gene023295 | MS.gene77001 | PPI |
| MS.gene023295 | MS.gene66443 | PPI |
| MS.gene023295 | MS.gene65381 | PPI |
| MS.gene023295 | MS.gene24461 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023295.t1 | MTR_4g127440 | 54.433 | 564 | 224 | 9 | 1 | 537 | 1 | 558 | 0.0 | 563 |
| MS.gene023295.t1 | MTR_2g037980 | 74.684 | 316 | 80 | 0 | 1 | 316 | 1 | 316 | 1.12e-177 | 514 |
| MS.gene023295.t1 | MTR_4g115420 | 50.088 | 567 | 221 | 10 | 2 | 535 | 4 | 541 | 3.74e-172 | 499 |
| MS.gene023295.t1 | MTR_0530s0020 | 39.377 | 546 | 255 | 16 | 21 | 535 | 6 | 506 | 1.01e-110 | 341 |
| MS.gene023295.t1 | MTR_4g114960 | 31.139 | 562 | 300 | 16 | 8 | 506 | 7 | 544 | 9.86e-77 | 254 |
| MS.gene023295.t1 | MTR_8g008860 | 32.407 | 540 | 312 | 15 | 8 | 504 | 7 | 536 | 1.42e-67 | 229 |
| MS.gene023295.t1 | MTR_2g008170 | 38.095 | 336 | 168 | 6 | 6 | 309 | 5 | 332 | 7.73e-64 | 220 |
| MS.gene023295.t1 | MTR_3g080490 | 34.783 | 322 | 194 | 6 | 8 | 322 | 6 | 318 | 1.71e-61 | 219 |
| MS.gene023295.t1 | MTR_3g106900 | 48.052 | 154 | 76 | 3 | 3 | 154 | 2 | 153 | 7.47e-37 | 145 |
| MS.gene023295.t1 | MTR_3g106900 | 34.605 | 367 | 186 | 11 | 181 | 506 | 227 | 580 | 5.92e-27 | 115 |
| MS.gene023295.t1 | MTR_8g106040 | 28.479 | 309 | 206 | 8 | 7 | 307 | 5 | 306 | 2.68e-35 | 138 |
| MS.gene023295.t1 | MTR_6g059380 | 24.725 | 364 | 221 | 12 | 8 | 344 | 10 | 347 | 3.55e-23 | 103 |
| MS.gene023295.t1 | MTR_1g033880 | 25.378 | 331 | 205 | 12 | 1 | 319 | 1 | 301 | 8.59e-16 | 79.7 |
| MS.gene023295.t1 | MTR_3g086670 | 33.548 | 155 | 96 | 4 | 8 | 159 | 6 | 156 | 6.83e-15 | 76.3 |
| MS.gene023295.t1 | MTR_8g089850 | 30.178 | 169 | 106 | 5 | 34 | 199 | 31 | 190 | 4.16e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023295.t1 | AT2G01600 | 70.548 | 584 | 138 | 9 | 1 | 563 | 1 | 571 | 0.0 | 785 |
| MS.gene023295.t1 | AT1G14910 | 69.204 | 565 | 154 | 8 | 1 | 559 | 1 | 551 | 0.0 | 768 |
| MS.gene023295.t1 | AT1G14910 | 68.319 | 565 | 154 | 9 | 1 | 559 | 1 | 546 | 0.0 | 749 |
| MS.gene023295.t1 | AT4G25940 | 57.196 | 535 | 185 | 9 | 1 | 498 | 1 | 528 | 0.0 | 565 |
| MS.gene023295.t1 | AT5G57200 | 75.949 | 316 | 75 | 1 | 1 | 316 | 1 | 315 | 1.04e-178 | 517 |
| MS.gene023295.t1 | AT5G35200 | 51.158 | 518 | 203 | 11 | 8 | 511 | 12 | 493 | 4.65e-164 | 478 |
| MS.gene023295.t1 | AT5G35200 | 51.158 | 518 | 203 | 11 | 8 | 511 | 12 | 493 | 4.65e-164 | 478 |
| MS.gene023295.t1 | AT1G03050 | 34.310 | 580 | 287 | 21 | 1 | 506 | 1 | 560 | 6.03e-77 | 254 |
| MS.gene023295.t1 | AT4G32285 | 32.034 | 590 | 296 | 15 | 6 | 506 | 4 | 577 | 2.95e-73 | 246 |
| MS.gene023295.t1 | AT4G32285 | 32.034 | 590 | 296 | 15 | 6 | 506 | 4 | 577 | 2.95e-73 | 246 |
| MS.gene023295.t1 | AT4G02650 | 31.826 | 575 | 297 | 19 | 8 | 506 | 7 | 562 | 1.67e-70 | 238 |
| MS.gene023295.t1 | AT1G05020 | 34.663 | 326 | 186 | 6 | 8 | 309 | 6 | 328 | 8.47e-58 | 204 |
| MS.gene023295.t1 | AT2G25430 | 51.007 | 149 | 69 | 3 | 6 | 152 | 4 | 150 | 7.52e-39 | 151 |
| MS.gene023295.t1 | AT2G25430 | 30.376 | 372 | 191 | 9 | 181 | 506 | 247 | 596 | 4.31e-28 | 119 |
| MS.gene023295.t1 | AT1G33340 | 28.013 | 307 | 199 | 7 | 7 | 305 | 9 | 301 | 1.80e-29 | 120 |
| MS.gene023295.t1 | AT4G40080 | 32.367 | 207 | 127 | 6 | 1 | 199 | 1 | 202 | 1.56e-21 | 97.1 |
| MS.gene023295.t1 | AT1G25240 | 28.704 | 324 | 184 | 11 | 4 | 315 | 2 | 290 | 5.94e-21 | 95.5 |
| MS.gene023295.t1 | AT1G25240 | 28.704 | 324 | 184 | 11 | 4 | 315 | 1 | 289 | 6.68e-21 | 95.1 |
| MS.gene023295.t1 | AT1G68110 | 24.762 | 315 | 203 | 10 | 4 | 307 | 1 | 292 | 1.00e-17 | 85.9 |
| MS.gene023295.t1 | AT2G01920 | 26.298 | 289 | 155 | 11 | 4 | 281 | 5 | 246 | 1.62e-11 | 66.2 |
| MS.gene023295.t1 | AT1G14686 | 24.367 | 316 | 195 | 12 | 4 | 310 | 1 | 281 | 6.94e-11 | 64.3 |
Find 160 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTGCGGATTCAGGATT+TGG | 0.185619 | 4.4:-17305288 | MS.gene023295:CDS |
| GCAAATCCCTTTGCGGATTC+AGG | 0.201574 | 4.4:-17305294 | MS.gene023295:CDS |
| ACTTCTTAGATGTCTTTCTT+TGG | 0.204881 | 4.4:+17312013 | None:intergenic |
| GCTGCACAACAACCAGTTTA+TGG | 0.213469 | 4.4:-17305492 | MS.gene023295:CDS |
| CTGCTGACCCGCACGCTTAT+AGG | 0.229577 | 4.4:+17306914 | None:intergenic |
| TCCTGTCCTTGGGCAGGTTT+GGG | 0.249846 | 4.4:+17310084 | None:intergenic |
| CTCCTGTCCTTGGGCAGGTT+TGG | 0.252819 | 4.4:+17310083 | None:intergenic |
| CCTTTGCGGATTCAGGATTT+GGG | 0.252980 | 4.4:-17305287 | MS.gene023295:CDS |
| TCATGAACTTCAAATGGATT+TGG | 0.265369 | 4.4:+17305459 | None:intergenic |
| CTTCTTAGATGTCTTTCTTT+GGG | 0.274846 | 4.4:+17312014 | None:intergenic |
| GCCATAGTCTCCACTGAAAA+TGG | 0.279408 | 4.4:-17306138 | MS.gene023295:intron |
| CATGAACTTCAAATGGATTT+GGG | 0.280536 | 4.4:+17305460 | None:intergenic |
| TTCTGATGGCACCTGTTCTT+CGG | 0.286225 | 4.4:+17306388 | None:intergenic |
| GACTTGCTAAGACGCGAAAT+TGG | 0.292068 | 4.4:-17311788 | MS.gene023295:CDS |
| TTTAGATAGTGAGGAGCTAT+TGG | 0.306314 | 4.4:-17309060 | MS.gene023295:CDS |
| CAACTATGGAAGAGTACATT+AGG | 0.314951 | 4.4:-17306598 | MS.gene023295:CDS |
| CAGTCTTGGCGAAGAGTTTA+CGG | 0.318642 | 4.4:-17312227 | MS.gene023295:CDS |
| TTGCTAACAGCTGCTCCTTC+TGG | 0.320696 | 4.4:+17308853 | None:intergenic |
| TCAATTGCAAGAACTTCTTC+TGG | 0.323093 | 4.4:+17306425 | None:intergenic |
| GGAGGTGCAGGCTCAGAATT+GGG | 0.326530 | 4.4:+17306341 | None:intergenic |
| AAGAGCATTTCTTTCCTCTA+TGG | 0.329697 | 4.4:+17306167 | None:intergenic |
| TCTGATGGCACCTGTTCTTC+GGG | 0.330942 | 4.4:+17306389 | None:intergenic |
| TGCCATTTGGACAGCGGCCG+GGG | 0.331631 | 4.4:+17305407 | None:intergenic |
| AAGAAAGACTTGAATGCTTT+CGG | 0.338922 | 4.4:-17310140 | MS.gene023295:CDS |
| GAATTACCTTCTCCTGTCCT+TGG | 0.343652 | 4.4:+17310073 | None:intergenic |
| CAACTTCTGCTGTTCGTCCC+AGG | 0.346336 | 4.4:-17311848 | MS.gene023295:CDS |
| GCTGTTGCATTCCTGCCATT+TGG | 0.350069 | 4.4:+17305394 | None:intergenic |
| TCCTCTATGGATGATGCATT+AGG | 0.359288 | 4.4:+17306180 | None:intergenic |
| GCAAGTCTCCAGTGTCAAAA+TGG | 0.362620 | 4.4:+17306297 | None:intergenic |
| CAGCCTGGGATTGTTCTGCC+TGG | 0.365265 | 4.4:-17310188 | MS.gene023295:CDS |
| TTATTATGTGGGTGAGAAAC+GGG | 0.370777 | 4.4:+17305249 | None:intergenic |
| AGGAGGTGCAGGCTCAGAAT+TGG | 0.371133 | 4.4:+17306340 | None:intergenic |
| GCTGCTGATGAGGCTGAGGC+TGG | 0.373860 | 4.4:+17305340 | None:intergenic |
| AACTTTGGTGGTATCTTTGA+CGG | 0.380674 | 4.4:+17312202 | None:intergenic |
| GGGGCTGGTGCTCCATAAAC+TGG | 0.381353 | 4.4:+17305480 | None:intergenic |
| CATCCTTAAAATTTGAAAGT+TGG | 0.385074 | 4.4:+17310367 | None:intergenic |
| CAGTACTCGGAGTGCTGACC+AGG | 0.388662 | 4.4:+17305946 | None:intergenic |
| TGGATGATGCATTAGGTTCC+AGG | 0.391284 | 4.4:+17306187 | None:intergenic |
| GGTGGTGGAGGAGGAGGTGC+AGG | 0.394378 | 4.4:+17306329 | None:intergenic |
| TGAGATGGTGGTGGAGGAGG+AGG | 0.402344 | 4.4:+17306323 | None:intergenic |
| CCACATAATAACAATCCATT+TGG | 0.402689 | 4.4:-17305237 | MS.gene023295:CDS |
| CCTGCCATTTGGACAGCGGC+CGG | 0.404720 | 4.4:+17305405 | None:intergenic |
| CTATGAAGTTTGCAGAGGAT+TGG | 0.406001 | 4.4:-17306778 | MS.gene023295:CDS |
| TGTCAAAGAGCCCGAAGAAC+AGG | 0.409894 | 4.4:-17306399 | MS.gene023295:CDS |
| AATGGATCATGAACTTCAAA+TGG | 0.420594 | 4.4:+17305453 | None:intergenic |
| TATATCGACTTGTTGGCTGC+CGG | 0.425212 | 4.4:-17309010 | MS.gene023295:CDS |
| AATTACCTTCTCCTGTCCTT+GGG | 0.427574 | 4.4:+17310074 | None:intergenic |
| GCAGCAGCAGCATATGTTGA+TGG | 0.428102 | 4.4:-17305322 | MS.gene023295:CDS |
| CCGCACGCTTATAGGCTTCA+AGG | 0.429737 | 4.4:+17306922 | None:intergenic |
| GAATCCGCAAAGGGATTTGC+AGG | 0.431243 | 4.4:+17305297 | None:intergenic |
| ACCTTCTCCTGTCCTTGGGC+AGG | 0.431535 | 4.4:+17310078 | None:intergenic |
| TTGTGAGATGGTGGTGGAGG+AGG | 0.437159 | 4.4:+17306320 | None:intergenic |
| TACTGGATGGGAGCTTGCCC+TGG | 0.437527 | 4.4:-17305964 | MS.gene023295:CDS |
| TGGACATTCAACGTGATTAG+TGG | 0.438730 | 4.4:+17312037 | None:intergenic |
| GGAATGTCAGGCTGGTGGAC+TGG | 0.439998 | 4.4:-17305559 | MS.gene023295:intron |
| TGCTGCTGCTGATGAGGCTG+AGG | 0.440595 | 4.4:+17305336 | None:intergenic |
| CTGCCATTTGGACAGCGGCC+GGG | 0.440665 | 4.4:+17305406 | None:intergenic |
| CAGCTTCTATATCGACTTGT+TGG | 0.441624 | 4.4:-17309017 | MS.gene023295:CDS |
| AGCCTGGGATTGTTCTGCCT+GGG | 0.446845 | 4.4:-17310187 | MS.gene023295:CDS |
| CAACAGCAAGCGAATCCATT+TGG | 0.449659 | 4.4:-17305378 | MS.gene023295:CDS |
| GCTTTAATAGCTTCATGTCT+TGG | 0.453459 | 4.4:+17306945 | None:intergenic |
| ACAAAAGATTTCGATCCTAC+TGG | 0.455678 | 4.4:-17305981 | MS.gene023295:CDS |
| AACAAGCCGGTGCTTCCAAA+TGG | 0.457190 | 4.4:+17305222 | None:intergenic |
| AACTTCTGCTGTTCGTCCCA+GGG | 0.458247 | 4.4:-17311847 | MS.gene023295:CDS |
| ATTTACTGCGCTATTAATGA+TGG | 0.459826 | 4.4:-17307085 | MS.gene023295:CDS |
| GTACTAACCATCGGCTCACT+TGG | 0.460104 | 4.4:+17306551 | None:intergenic |
| CACCCTCCCTGAGTAACCTA+TGG | 0.461427 | 4.4:+17310442 | None:intergenic |
| CCAAATGGATTGTTATTATG+TGG | 0.463425 | 4.4:+17305237 | None:intergenic |
| GTTATTATGTGGGTGAGAAA+CGG | 0.463914 | 4.4:+17305248 | None:intergenic |
| AACAATCCATTTGGAAGCAC+CGG | 0.464105 | 4.4:-17305228 | MS.gene023295:CDS |
| AACTGTGGGTAAGGACCAAA+TGG | 0.466710 | 4.4:+17305363 | None:intergenic |
| ATATCGACTTGTTGGCTGCC+GGG | 0.467584 | 4.4:-17309009 | MS.gene023295:intron |
| CTATAAGCGTGCGGGTCAGC+AGG | 0.476852 | 4.4:-17306913 | MS.gene023295:intron |
| GTACATTAGGGAGGCACCCC+GGG | 0.477247 | 4.4:-17306585 | MS.gene023295:CDS |
| GACATGGGCGAGACCAACTT+TGG | 0.477335 | 4.4:+17312187 | None:intergenic |
| TTCAGTCAATGAGAGACAAT+TGG | 0.480704 | 4.4:-17305916 | MS.gene023295:intron |
| ATGTTGCTTGATATAGCAAA+TGG | 0.483557 | 4.4:+17305435 | None:intergenic |
| ATCAAGCAACATTGCTCCCC+CGG | 0.485362 | 4.4:-17305424 | MS.gene023295:CDS |
| CTTTGCGGATTCAGGATTTG+GGG | 0.488384 | 4.4:-17305286 | MS.gene023295:CDS |
| CACTTGGAACATTAACAACC+CGG | 0.489997 | 4.4:+17306567 | None:intergenic |
| AAGGATGACTCTAGTCCAAT+CGG | 0.491603 | 4.4:-17310351 | MS.gene023295:intron |
| GCAGAGGATTGGAACTTGCT+AGG | 0.493008 | 4.4:-17306767 | MS.gene023295:CDS |
| CTTAACAGCTTATATGATGA+AGG | 0.493587 | 4.4:-17305525 | MS.gene023295:CDS |
| TGAGGCTGGAACTGTGGGTA+AGG | 0.498922 | 4.4:+17305354 | None:intergenic |
| AACTATGGAAGAGTACATTA+GGG | 0.503486 | 4.4:-17306597 | MS.gene023295:CDS |
| CTTAGATGTCTTTCTTTGGG+TGG | 0.506041 | 4.4:+17312017 | None:intergenic |
| GGACCCTGCAAATCCCTTTG+CGG | 0.509785 | 4.4:-17305301 | MS.gene023295:CDS |
| TATAGAAGCTGTTGTAAAGC+AGG | 0.509890 | 4.4:+17309029 | None:intergenic |
| AGAATTTCCTCTCTAAGCGT+TGG | 0.511778 | 4.4:+17310417 | None:intergenic |
| TAGTCATCCATAGGTTACTC+AGG | 0.518273 | 4.4:-17310449 | MS.gene023295:CDS |
| CCGCGTAATCGCTATTGACA+TGG | 0.523311 | 4.4:+17312171 | None:intergenic |
| CGCACGCTTATAGGCTTCAA+GGG | 0.523909 | 4.4:+17306923 | None:intergenic |
| ATATGCTGCTGCTGCTGATG+AGG | 0.524715 | 4.4:+17305330 | None:intergenic |
| ACCCAAACCTGCCCAAGGAC+AGG | 0.527781 | 4.4:-17310085 | MS.gene023295:CDS |
| CATTATCAATCTTGTTGACA+AGG | 0.528067 | 4.4:-17307062 | MS.gene023295:intron |
| ACAATAAGCAACATCAGCCC+TGG | 0.528722 | 4.4:+17311830 | None:intergenic |
| CCGGCCGCTGTCCAAATGGC+AGG | 0.532125 | 4.4:-17305405 | MS.gene023295:CDS |
| TGGTTGTGAGATGGTGGTGG+AGG | 0.535548 | 4.4:+17306317 | None:intergenic |
| TGCTAAGACGCGAAATTGGA+CGG | 0.536350 | 4.4:-17311784 | MS.gene023295:intron |
| CAATGGGTACTCTTCAGTCT+TGG | 0.538882 | 4.4:-17312241 | MS.gene023295:CDS |
| CCAAATCCTGAATCCGCAAA+GGG | 0.540155 | 4.4:+17305288 | None:intergenic |
| AGCAGGGACACAGCAGGACT+AGG | 0.541151 | 4.4:-17309085 | MS.gene023295:intron |
| ACTTCAAATGGATTTGGGGC+TGG | 0.546087 | 4.4:+17305465 | None:intergenic |
| CATTCCTGCCATTTGGACAG+CGG | 0.548232 | 4.4:+17305401 | None:intergenic |
| GCCATTTGGACAGCGGCCGG+GGG | 0.549447 | 4.4:+17305408 | None:intergenic |
| GATACAATATGCGCTAGCTC+TGG | 0.549765 | 4.4:-17308824 | MS.gene023295:intron |
| TTATTATCACTAGGTTCTGA+TGG | 0.551694 | 4.4:+17306374 | None:intergenic |
| TCTTATTTCTTACAACAAGC+CGG | 0.553829 | 4.4:+17305209 | None:intergenic |
| AAGATTTCGATCCTACTGGA+TGG | 0.558420 | 4.4:-17305977 | MS.gene023295:CDS |
| GCAGGGACACAGCAGGACTA+GGG | 0.563205 | 4.4:-17309084 | MS.gene023295:intron |
| GTCAAAGATACCACCAAAGT+TGG | 0.563537 | 4.4:-17312200 | MS.gene023295:CDS |
| ACCTAATGCATCATCCATAG+AGG | 0.564544 | 4.4:-17306181 | MS.gene023295:CDS |
| AAATGGTTGTGAGATGGTGG+TGG | 0.566222 | 4.4:+17306314 | None:intergenic |
| TGTGAATATAGGCACTGCAT+CGG | 0.567918 | 4.4:-17306027 | MS.gene023295:intron |
| CAAATGGATTGTTATTATGT+GGG | 0.570554 | 4.4:+17305238 | None:intergenic |
| AGACATACCTCTCTTAAGAC+AGG | 0.571173 | 4.4:+17306732 | None:intergenic |
| TAATGTTCCAAGTGAGCCGA+TGG | 0.572868 | 4.4:-17306558 | MS.gene023295:intron |
| TGAGGCTGAGGCTGGAACTG+TGG | 0.573458 | 4.4:+17305348 | None:intergenic |
| GAGGTGCAGGCTCAGAATTG+GGG | 0.576097 | 4.4:+17306342 | None:intergenic |
| AGGTGCAGGCTCAGAATTGG+GGG | 0.577902 | 4.4:+17306343 | None:intergenic |
| GGAAAGAAATGCTCTTGCGC+TGG | 0.578170 | 4.4:-17306160 | MS.gene023295:CDS |
| TCAGTTTCCTGTCTTAAGAG+AGG | 0.581783 | 4.4:-17306739 | MS.gene023295:intron |
| ACCTGCCCAAGGACAGGAGA+AGG | 0.586183 | 4.4:-17310079 | MS.gene023295:intron |
| CCCAAATCCTGAATCCGCAA+AGG | 0.589248 | 4.4:+17305287 | None:intergenic |
| ATGGGCGAGACCAACTTTGG+TGG | 0.590062 | 4.4:+17312190 | None:intergenic |
| AAACACTGATAGTCATCCAT+AGG | 0.590218 | 4.4:-17310458 | MS.gene023295:CDS |
| GTCATGGAATGTCAGGCTGG+TGG | 0.590289 | 4.4:-17305564 | MS.gene023295:intron |
| AGTACATTAGGGAGGCACCC+CGG | 0.591792 | 4.4:-17306586 | MS.gene023295:CDS |
| TACCCAGGCAGAACAATCCC+AGG | 0.597737 | 4.4:+17310185 | None:intergenic |
| GACTAGGGATTTAGATAGTG+AGG | 0.598908 | 4.4:-17309069 | MS.gene023295:CDS |
| ACTTGGAACATTAACAACCC+GGG | 0.599939 | 4.4:+17306568 | None:intergenic |
| ATCCATAGGTTACTCAGGGA+GGG | 0.600254 | 4.4:-17310444 | MS.gene023295:CDS |
| CTTGAAGCCTATAAGCGTGC+GGG | 0.602046 | 4.4:-17306921 | MS.gene023295:CDS |
| AGATTTCGATCCTACTGGAT+GGG | 0.602139 | 4.4:-17305976 | MS.gene023295:CDS |
| ATGAACTTCAAATGGATTTG+GGG | 0.604886 | 4.4:+17305461 | None:intergenic |
| GAGGCTGAGGCTGGAACTGT+GGG | 0.606106 | 4.4:+17305349 | None:intergenic |
| GATTTCTATGAAGTTTGCAG+AGG | 0.609916 | 4.4:-17306783 | MS.gene023295:CDS |
| CAATAAGCAACATCAGCCCT+GGG | 0.614387 | 4.4:+17311831 | None:intergenic |
| TCAAAATGGTTGTGAGATGG+TGG | 0.614778 | 4.4:+17306311 | None:intergenic |
| TTTGCGGATTCAGGATTTGG+GGG | 0.625862 | 4.4:-17305285 | MS.gene023295:CDS |
| CGCGTAATCGCTATTGACAT+GGG | 0.631037 | 4.4:+17312172 | None:intergenic |
| AGTCATCCATAGGTTACTCA+GGG | 0.631167 | 4.4:-17310448 | MS.gene023295:CDS |
| TATGTAGGGATTGAATGACC+TGG | 0.635485 | 4.4:-17306205 | MS.gene023295:intron |
| GGGTGATCCAACGCTTAGAG+AGG | 0.638082 | 4.4:-17310424 | MS.gene023295:CDS |
| CCTTGAAGCCTATAAGCGTG+CGG | 0.638815 | 4.4:-17306922 | MS.gene023295:CDS |
| CGTCTACCCAAACCTGCCCA+AGG | 0.639108 | 4.4:-17310090 | MS.gene023295:CDS |
| ACTGAAGAAATATCAGTACT+CGG | 0.639433 | 4.4:+17305933 | None:intergenic |
| CATCCATAGGTTACTCAGGG+AGG | 0.645447 | 4.4:-17310445 | MS.gene023295:CDS |
| AGGGCAAGCTCCCATCCAGT+AGG | 0.647054 | 4.4:+17305966 | None:intergenic |
| TAATGCATAGGTACGTACCC+AGG | 0.647422 | 4.4:+17310170 | None:intergenic |
| CTATAAATTACACAGCCAGA+AGG | 0.652759 | 4.4:-17308868 | MS.gene023295:intron |
| CTTGGAACATTAACAACCCG+GGG | 0.656680 | 4.4:+17306569 | None:intergenic |
| GTGTCAAAATGGTTGTGAGA+TGG | 0.662795 | 4.4:+17306308 | None:intergenic |
| AATCCGCAAAGGGATTTGCA+GGG | 0.665370 | 4.4:+17305298 | None:intergenic |
| GTTGTAAGAAAAGATTGCGG+AGG | 0.668024 | 4.4:+17306617 | None:intergenic |
| GCAGCAACATTATTATCACT+AGG | 0.687838 | 4.4:+17306365 | None:intergenic |
| TATGGAAGAGTACATTAGGG+AGG | 0.705602 | 4.4:-17306594 | MS.gene023295:CDS |
| AGTACTCGGAGTGCTGACCA+GGG | 0.708772 | 4.4:+17305947 | None:intergenic |
| CCATGTCAATAGCGATTACG+CGG | 0.714918 | 4.4:-17312171 | MS.gene023295:intron |
| ATAGTTGTAAGAAAAGATTG+CGG | 0.742982 | 4.4:+17306614 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 17305218 | 17312261 | 17305218 | ID=MS.gene023295 |
| chr4.4 | mRNA | 17305218 | 17312261 | 17305218 | ID=MS.gene023295.t1;Parent=MS.gene023295 |
| chr4.4 | exon | 17312172 | 17312261 | 17312172 | ID=MS.gene023295.t1.exon1;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17312172 | 17312261 | 17312172 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17312015 | 17312084 | 17312015 | ID=MS.gene023295.t1.exon2;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17312015 | 17312084 | 17312015 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17311785 | 17311882 | 17311785 | ID=MS.gene023295.t1.exon3;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17311785 | 17311882 | 17311785 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17310352 | 17310490 | 17310352 | ID=MS.gene023295.t1.exon4;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17310352 | 17310490 | 17310352 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17310080 | 17310207 | 17310080 | ID=MS.gene023295.t1.exon5;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17310080 | 17310207 | 17310080 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17309010 | 17309102 | 17309010 | ID=MS.gene023295.t1.exon6;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17309010 | 17309102 | 17309010 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17308825 | 17308875 | 17308825 | ID=MS.gene023295.t1.exon7;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17308825 | 17308875 | 17308825 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17307063 | 17307128 | 17307063 | ID=MS.gene023295.t1.exon8;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17307063 | 17307128 | 17307063 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17306914 | 17306979 | 17306914 | ID=MS.gene023295.t1.exon9;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17306914 | 17306979 | 17306914 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17306740 | 17306820 | 17306740 | ID=MS.gene023295.t1.exon10;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17306740 | 17306820 | 17306740 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17306559 | 17306639 | 17306559 | ID=MS.gene023295.t1.exon11;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17306559 | 17306639 | 17306559 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17306295 | 17306465 | 17306295 | ID=MS.gene023295.t1.exon12;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17306295 | 17306465 | 17306295 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17306139 | 17306220 | 17306139 | ID=MS.gene023295.t1.exon13;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17306139 | 17306220 | 17306139 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17305917 | 17306038 | 17305917 | ID=MS.gene023295.t1.exon14;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17305917 | 17306038 | 17305917 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| chr4.4 | exon | 17305218 | 17305571 | 17305218 | ID=MS.gene023295.t1.exon15;Parent=MS.gene023295.t1 |
| chr4.4 | CDS | 17305218 | 17305571 | 17305218 | ID=cds.MS.gene023295.t1;Parent=MS.gene023295.t1 |
| Gene Sequence |
| Protein sequence |
