Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071438.t1 | RHN42370.1 | 95.8 | 530 | 18 | 2 | 1 | 530 | 1 | 526 | 5.90E-274 | 953 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071438.t1 | Q8LBH2 | 71.7 | 530 | 129 | 8 | 1 | 524 | 1 | 515 | 3.6e-195 | 682.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071438.t1 | A0A396GMV6 | 95.8 | 530 | 18 | 2 | 1 | 530 | 1 | 526 | 4.3e-274 | 953.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene071438 | -0.811916 | 5.51E-51 | -1.69E-46 |
| MS.gene049151 | MS.gene071438 | -0.816966 | 4.21E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene071438 | -0.808784 | 2.61E-50 | -1.69E-46 |
| MS.gene049178 | MS.gene071438 | -0.800432 | 1.45E-48 | -1.69E-46 |
| MS.gene049195 | MS.gene071438 | -0.8049 | 1.73E-49 | -1.69E-46 |
| MS.gene049230 | MS.gene071438 | -0.814322 | 1.63E-51 | -1.69E-46 |
| MS.gene049297 | MS.gene071438 | -0.827595 | 1.43E-54 | -1.69E-46 |
| MS.gene04933 | MS.gene071438 | -0.80803 | 3.78E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene071438 | -0.881239 | 2.83E-70 | -1.69E-46 |
| MS.gene049758 | MS.gene071438 | -0.844301 | 8.23E-59 | -1.69E-46 |
| MS.gene049910 | MS.gene071438 | -0.830697 | 2.54E-55 | -1.69E-46 |
| MS.gene050226 | MS.gene071438 | -0.88724 | 1.70E-72 | -1.69E-46 |
| MS.gene050227 | MS.gene071438 | -0.904001 | 1.93E-79 | -1.69E-46 |
| MS.gene050228 | MS.gene071438 | -0.897538 | 1.28E-76 | -1.69E-46 |
| MS.gene050303 | MS.gene071438 | -0.802839 | 4.64E-49 | -1.69E-46 |
| MS.gene050330 | MS.gene071438 | 0.831641 | 1.49E-55 | -1.69E-46 |
| MS.gene050442 | MS.gene071438 | -0.841099 | 5.83E-58 | -1.69E-46 |
| MS.gene050558 | MS.gene071438 | -0.805083 | 1.58E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene071438 | 0.925628 | 1.42E-90 | -1.69E-46 |
| MS.gene050642 | MS.gene071438 | -0.886171 | 4.31E-72 | -1.69E-46 |
| MS.gene050719 | MS.gene071438 | -0.822369 | 2.46E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene071438 | -0.821008 | 5.07E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene071438 | -0.826425 | 2.73E-54 | -1.69E-46 |
| MS.gene050750 | MS.gene071438 | -0.813385 | 2.63E-51 | -1.69E-46 |
| MS.gene050762 | MS.gene071438 | -0.84621 | 2.51E-59 | -1.69E-46 |
| MS.gene050763 | MS.gene071438 | -0.848667 | 5.29E-60 | -1.69E-46 |
| MS.gene050787 | MS.gene071438 | -0.821019 | 5.04E-53 | -1.69E-46 |
| MS.gene050820 | MS.gene071438 | -0.824231 | 9.03E-54 | -1.69E-46 |
| MS.gene050824 | MS.gene071438 | -0.805715 | 1.17E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene071438 | -0.813267 | 2.79E-51 | -1.69E-46 |
| MS.gene05119 | MS.gene071438 | 0.811088 | 8.34E-51 | -1.69E-46 |
| MS.gene051257 | MS.gene071438 | -0.826572 | 2.52E-54 | -1.69E-46 |
| MS.gene051663 | MS.gene071438 | -0.805401 | 1.36E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene071438 | -0.880429 | 5.53E-70 | -1.69E-46 |
| MS.gene051983 | MS.gene071438 | -0.878299 | 3.14E-69 | -1.69E-46 |
| MS.gene052011 | MS.gene071438 | 0.816211 | 6.22E-52 | -1.69E-46 |
| MS.gene052012 | MS.gene071438 | -0.825824 | 3.80E-54 | -1.69E-46 |
| MS.gene052048 | MS.gene071438 | 0.806604 | 7.59E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene071438 | -0.860938 | 1.46E-63 | -1.69E-46 |
| MS.gene052176 | MS.gene071438 | -0.8434 | 1.43E-58 | -1.69E-46 |
| MS.gene052309 | MS.gene071438 | 0.846963 | 1.56E-59 | -1.69E-46 |
| MS.gene052333 | MS.gene071438 | -0.818177 | 2.25E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene071438 | -0.820183 | 7.85E-53 | -1.69E-46 |
| MS.gene052384 | MS.gene071438 | -0.802985 | 4.33E-49 | -1.69E-46 |
| MS.gene052389 | MS.gene071438 | -0.846116 | 2.66E-59 | -1.69E-46 |
| MS.gene052420 | MS.gene071438 | -0.842573 | 2.38E-58 | -1.69E-46 |
| MS.gene052586 | MS.gene071438 | -0.809735 | 1.63E-50 | -1.69E-46 |
| MS.gene052600 | MS.gene071438 | -0.802651 | 5.07E-49 | -1.69E-46 |
| MS.gene053054 | MS.gene071438 | 0.827696 | 1.36E-54 | -1.69E-46 |
| MS.gene053811 | MS.gene071438 | -0.821922 | 3.12E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene071438 | -0.872848 | 2.32E-67 | -1.69E-46 |
| MS.gene054183 | MS.gene071438 | -0.811653 | 6.29E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene071438 | 0.82854 | 8.49E-55 | -1.69E-46 |
| MS.gene054379 | MS.gene071438 | -0.854149 | 1.49E-61 | -1.69E-46 |
| MS.gene054405 | MS.gene071438 | -0.803491 | 3.40E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene071438 | -0.849753 | 2.64E-60 | -1.69E-46 |
| MS.gene054473 | MS.gene071438 | -0.819062 | 1.41E-52 | -1.69E-46 |
| MS.gene054542 | MS.gene071438 | -0.82454 | 7.64E-54 | -1.69E-46 |
| MS.gene05468 | MS.gene071438 | -0.811777 | 5.91E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene071438 | -0.851467 | 8.71E-61 | -1.69E-46 |
| MS.gene054942 | MS.gene071438 | -0.84762 | 1.03E-59 | -1.69E-46 |
| MS.gene054983 | MS.gene071438 | -0.827431 | 1.57E-54 | -1.69E-46 |
| MS.gene05510 | MS.gene071438 | -0.817819 | 2.71E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene071438 | -0.800687 | 1.28E-48 | -1.69E-46 |
| MS.gene055358 | MS.gene071438 | -0.804834 | 1.79E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene071438 | -0.857519 | 1.54E-62 | -1.69E-46 |
| MS.gene055816 | MS.gene071438 | 0.810462 | 1.14E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene071438 | 0.800979 | 1.12E-48 | -1.69E-46 |
| MS.gene056087 | MS.gene071438 | -0.823593 | 1.27E-53 | -1.69E-46 |
| MS.gene056400 | MS.gene071438 | -0.814718 | 1.34E-51 | -1.69E-46 |
| MS.gene056447 | MS.gene071438 | -0.811178 | 7.97E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene071438 | -0.827699 | 1.35E-54 | -1.69E-46 |
| MS.gene056552 | MS.gene071438 | -0.83872 | 2.43E-57 | -1.69E-46 |
| MS.gene056875 | MS.gene071438 | -0.815212 | 1.04E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene071438 | -0.86988 | 2.22E-66 | -1.69E-46 |
| MS.gene057121 | MS.gene071438 | -0.807793 | 4.25E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene071438 | -0.820289 | 7.42E-53 | -1.69E-46 |
| MS.gene05761 | MS.gene071438 | -0.840682 | 7.50E-58 | -1.69E-46 |
| MS.gene057967 | MS.gene071438 | -0.82414 | 9.49E-54 | -1.69E-46 |
| MS.gene05811 | MS.gene071438 | -0.815764 | 7.82E-52 | -1.69E-46 |
| MS.gene058139 | MS.gene071438 | -0.820912 | 5.34E-53 | -1.69E-46 |
| MS.gene058146 | MS.gene071438 | -0.827973 | 1.16E-54 | -1.69E-46 |
| MS.gene058168 | MS.gene071438 | -0.803162 | 3.98E-49 | -1.69E-46 |
| MS.gene058399 | MS.gene071438 | -0.829012 | 6.53E-55 | -1.69E-46 |
| MS.gene058435 | MS.gene071438 | -0.808543 | 2.94E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene071438 | -0.838229 | 3.25E-57 | -1.69E-46 |
| MS.gene059033 | MS.gene071438 | 0.803887 | 2.81E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene071438 | -0.809543 | 1.80E-50 | -1.69E-46 |
| MS.gene059249 | MS.gene071438 | -0.82174 | 3.44E-53 | -1.69E-46 |
| MS.gene059609 | MS.gene071438 | -0.853558 | 2.21E-61 | -1.69E-46 |
| MS.gene059664 | MS.gene071438 | -0.800784 | 1.23E-48 | -1.69E-46 |
| MS.gene059789 | MS.gene071438 | -0.800982 | 1.12E-48 | -1.69E-46 |
| MS.gene05984 | MS.gene071438 | -0.858447 | 8.19E-63 | -1.69E-46 |
| MS.gene060084 | MS.gene071438 | -0.825784 | 3.88E-54 | -1.69E-46 |
| MS.gene060137 | MS.gene071438 | 0.847839 | 8.97E-60 | -1.69E-46 |
| MS.gene060297 | MS.gene071438 | -0.811608 | 6.43E-51 | -1.69E-46 |
| MS.gene060404 | MS.gene071438 | -0.805565 | 1.26E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene071438 | -0.816019 | 6.86E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene071438 | -0.844342 | 8.02E-59 | -1.69E-46 |
| MS.gene060685 | MS.gene071438 | -0.839543 | 1.49E-57 | -1.69E-46 |
| MS.gene060802 | MS.gene071438 | -0.855854 | 4.77E-62 | -1.69E-46 |
| MS.gene060803 | MS.gene071438 | -0.850553 | 1.58E-60 | -1.69E-46 |
| MS.gene060907 | MS.gene071438 | -0.804974 | 1.67E-49 | -1.69E-46 |
| MS.gene060940 | MS.gene071438 | -0.82347 | 1.36E-53 | -1.69E-46 |
| MS.gene060942 | MS.gene071438 | -0.83949 | 1.54E-57 | -1.69E-46 |
| MS.gene060998 | MS.gene071438 | -0.839728 | 1.33E-57 | -1.69E-46 |
| MS.gene061002 | MS.gene071438 | -0.826762 | 2.27E-54 | -1.69E-46 |
| MS.gene061040 | MS.gene071438 | 0.854334 | 1.32E-61 | -1.69E-46 |
| MS.gene061049 | MS.gene071438 | -0.81244 | 4.24E-51 | -1.69E-46 |
| MS.gene061114 | MS.gene071438 | 0.860064 | 2.68E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene58034 | MS.gene071438 | PPI |
| MS.gene24461 | MS.gene071438 | PPI |
| MS.gene58033 | MS.gene071438 | PPI |
| MS.gene071438 | MS.gene036713 | PPI |
| MS.gene071438 | MS.gene65381 | PPI |
| MS.gene77001 | MS.gene071438 | PPI |
| MS.gene75800 | MS.gene071438 | PPI |
| MS.gene074497 | MS.gene071438 | PPI |
| MS.gene66443 | MS.gene071438 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071438.t1 | MTR_4g127440 | 52.338 | 556 | 228 | 11 | 1 | 529 | 1 | 546 | 3.76e-180 | 519 |
| MS.gene071438.t1 | MTR_2g037980 | 70.625 | 320 | 90 | 2 | 1 | 320 | 1 | 316 | 3.05e-165 | 481 |
| MS.gene071438.t1 | MTR_4g115420 | 51.644 | 517 | 207 | 10 | 2 | 507 | 4 | 488 | 2.99e-160 | 467 |
| MS.gene071438.t1 | MTR_0530s0020 | 38.868 | 530 | 249 | 17 | 21 | 514 | 6 | 496 | 5.78e-103 | 320 |
| MS.gene071438.t1 | MTR_4g114960 | 30.742 | 566 | 301 | 18 | 8 | 510 | 7 | 544 | 9.42e-71 | 237 |
| MS.gene071438.t1 | MTR_8g008860 | 31.734 | 542 | 317 | 17 | 8 | 508 | 7 | 536 | 3.15e-61 | 211 |
| MS.gene071438.t1 | MTR_2g008170 | 37.353 | 340 | 169 | 8 | 6 | 313 | 5 | 332 | 2.61e-58 | 204 |
| MS.gene071438.t1 | MTR_3g080490 | 32.822 | 326 | 199 | 8 | 8 | 326 | 6 | 318 | 8.62e-54 | 196 |
| MS.gene071438.t1 | MTR_3g106900 | 47.097 | 155 | 77 | 4 | 3 | 155 | 2 | 153 | 2.08e-33 | 134 |
| MS.gene071438.t1 | MTR_3g106900 | 33.244 | 373 | 186 | 12 | 182 | 510 | 227 | 580 | 4.53e-25 | 109 |
| MS.gene071438.t1 | MTR_8g106040 | 26.603 | 312 | 212 | 8 | 7 | 311 | 5 | 306 | 7.29e-31 | 125 |
| MS.gene071438.t1 | MTR_6g059380 | 24.722 | 360 | 230 | 11 | 8 | 348 | 10 | 347 | 2.37e-23 | 103 |
| MS.gene071438.t1 | MTR_1g033880 | 23.442 | 337 | 208 | 11 | 1 | 323 | 1 | 301 | 3.05e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071438.t1 | AT2G01600 | 70.950 | 537 | 133 | 8 | 1 | 529 | 1 | 522 | 0.0 | 732 |
| MS.gene071438.t1 | AT1G14910 | 69.540 | 522 | 138 | 8 | 1 | 517 | 1 | 506 | 0.0 | 718 |
| MS.gene071438.t1 | AT1G14910 | 68.702 | 524 | 134 | 9 | 1 | 517 | 1 | 501 | 0.0 | 704 |
| MS.gene071438.t1 | AT4G25940 | 55.473 | 539 | 192 | 12 | 1 | 502 | 1 | 528 | 0.0 | 535 |
| MS.gene071438.t1 | AT5G57200 | 72.188 | 320 | 84 | 3 | 1 | 320 | 1 | 315 | 7.96e-167 | 486 |
| MS.gene071438.t1 | AT5G35200 | 49.234 | 522 | 211 | 13 | 8 | 515 | 12 | 493 | 5.47e-153 | 448 |
| MS.gene071438.t1 | AT5G35200 | 49.234 | 522 | 211 | 13 | 8 | 515 | 12 | 493 | 5.47e-153 | 448 |
| MS.gene071438.t1 | AT1G03050 | 33.904 | 584 | 288 | 23 | 1 | 510 | 1 | 560 | 7.56e-72 | 240 |
| MS.gene071438.t1 | AT4G32285 | 31.650 | 594 | 297 | 17 | 6 | 510 | 4 | 577 | 2.29e-67 | 229 |
| MS.gene071438.t1 | AT4G32285 | 31.650 | 594 | 297 | 17 | 6 | 510 | 4 | 577 | 2.29e-67 | 229 |
| MS.gene071438.t1 | AT4G02650 | 31.434 | 579 | 298 | 21 | 8 | 510 | 7 | 562 | 3.33e-65 | 223 |
| MS.gene071438.t1 | AT1G05020 | 33.333 | 330 | 189 | 8 | 8 | 313 | 6 | 328 | 1.14e-50 | 184 |
| MS.gene071438.t1 | AT2G25430 | 50.000 | 150 | 70 | 4 | 6 | 153 | 4 | 150 | 2.47e-35 | 140 |
| MS.gene071438.t1 | AT2G25430 | 29.459 | 370 | 200 | 12 | 182 | 510 | 247 | 596 | 5.50e-26 | 112 |
| MS.gene071438.t1 | AT1G33340 | 27.036 | 307 | 206 | 5 | 7 | 309 | 9 | 301 | 1.65e-29 | 120 |
| MS.gene071438.t1 | AT1G25240 | 27.628 | 333 | 180 | 13 | 4 | 319 | 1 | 289 | 1.97e-17 | 84.7 |
| MS.gene071438.t1 | AT1G25240 | 27.628 | 333 | 180 | 13 | 4 | 319 | 2 | 290 | 2.12e-17 | 84.7 |
| MS.gene071438.t1 | AT4G40080 | 29.952 | 207 | 133 | 6 | 1 | 200 | 1 | 202 | 1.41e-15 | 79.0 |
| MS.gene071438.t1 | AT1G68110 | 23.765 | 324 | 199 | 11 | 4 | 311 | 1 | 292 | 4.86e-14 | 74.3 |
Find 144 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCTTAGATGTCTTTCTT+TGG | 0.204881 | 4.2:+54812021 | None:intergenic |
| GCTGCACAACAACCAGTTTA+TGG | 0.213469 | 4.2:-54805509 | MS.gene071438:CDS |
| CTGCTGACCCGCACGCTTAT+AGG | 0.229577 | 4.2:+54806930 | None:intergenic |
| TCCTGTCCTTGGGCAGGTTT+GGG | 0.249846 | 4.2:+54810098 | None:intergenic |
| CTCCTGTCCTTGGGCAGGTT+TGG | 0.252819 | 4.2:+54810097 | None:intergenic |
| TCATGAACTTCAAATGGATT+TGG | 0.265369 | 4.2:+54805476 | None:intergenic |
| CTTCTTAGATGTCTTTCTTT+GGG | 0.274846 | 4.2:+54812022 | None:intergenic |
| GCCATAGTCTCCACTGAAAA+TGG | 0.279408 | 4.2:-54806155 | MS.gene071438:intron |
| CATGAACTTCAAATGGATTT+GGG | 0.280536 | 4.2:+54805477 | None:intergenic |
| TTCTGATGGCACCTGTTCTT+CGG | 0.286225 | 4.2:+54806405 | None:intergenic |
| GACTTGCTAAGACGCGAAAT+TGG | 0.292068 | 4.2:-54811796 | MS.gene071438:CDS |
| TTTAGATAGTGAGGAGCTAT+TGG | 0.306314 | 4.2:-54809075 | MS.gene071438:CDS |
| CAACTATGGAAGAGTACATT+AGG | 0.314951 | 4.2:-54806615 | MS.gene071438:CDS |
| CAGTCTTGGCGAAGAGTTTA+CGG | 0.318642 | 4.2:-54812235 | MS.gene071438:CDS |
| TTGCTAACAGCTGCTCCTTC+TGG | 0.320696 | 4.2:+54808867 | None:intergenic |
| TCAATTGCAAGAACTTCTTC+TGG | 0.323093 | 4.2:+54806442 | None:intergenic |
| GGAGGTGCAGGCTCAGAATT+GGG | 0.326530 | 4.2:+54806358 | None:intergenic |
| AAGAGCATTTCTTTCCTCTA+TGG | 0.329697 | 4.2:+54806184 | None:intergenic |
| TCTGATGGCACCTGTTCTTC+GGG | 0.330942 | 4.2:+54806406 | None:intergenic |
| TGCCATTTGGACAGCGGCCG+GGG | 0.331631 | 4.2:+54805424 | None:intergenic |
| AAGAAAGACTTGAATGCTTT+CGG | 0.338922 | 4.2:-54810154 | MS.gene071438:CDS |
| GAATTACCTTCTCCTGTCCT+TGG | 0.343652 | 4.2:+54810087 | None:intergenic |
| CAACTTCTGCTGTTCGTCCC+AGG | 0.346336 | 4.2:-54811856 | MS.gene071438:CDS |
| GCTGTTGCATTCCTGCCATT+TGG | 0.350069 | 4.2:+54805411 | None:intergenic |
| TCCTCTATGGATGATGCATT+AGG | 0.359288 | 4.2:+54806197 | None:intergenic |
| GCAAGTCTCCAGTGTCAAAA+TGG | 0.362620 | 4.2:+54806314 | None:intergenic |
| CAGCCTGGGATTGTTCTGCC+TGG | 0.365265 | 4.2:-54810202 | MS.gene071438:CDS |
| AGGAGGTGCAGGCTCAGAAT+TGG | 0.371133 | 4.2:+54806357 | None:intergenic |
| GCTGCTGATGAGGCTGAGGC+TGG | 0.373860 | 4.2:+54805357 | None:intergenic |
| AACTTTGGTGGTATCTTTGA+CGG | 0.380674 | 4.2:+54812210 | None:intergenic |
| GGGGCTGGTGCTCCATAAAC+TGG | 0.381353 | 4.2:+54805497 | None:intergenic |
| CAGTACTCGGAGTGCTGACC+AGG | 0.388662 | 4.2:+54805964 | None:intergenic |
| TGGATGATGCATTAGGTTCC+AGG | 0.391284 | 4.2:+54806204 | None:intergenic |
| GGTGGTGGAGGAGGAGGTGC+AGG | 0.394378 | 4.2:+54806346 | None:intergenic |
| TATATCGACTTGTTGGCTGC+CGG | 0.394789 | 4.2:-54809025 | MS.gene071438:CDS |
| TGAGATGGTGGTGGAGGAGG+AGG | 0.402344 | 4.2:+54806340 | None:intergenic |
| CCTGCCATTTGGACAGCGGC+CGG | 0.404720 | 4.2:+54805422 | None:intergenic |
| CTATGAAGTTTGCAGAGGAT+TGG | 0.406001 | 4.2:-54806794 | MS.gene071438:CDS |
| TGTCAAAGAGCCCGAAGAAC+AGG | 0.409894 | 4.2:-54806416 | MS.gene071438:CDS |
| ATATCGACTTGTTGGCTGCC+GGG | 0.416273 | 4.2:-54809024 | MS.gene071438:CDS |
| AATGGATCATGAACTTCAAA+TGG | 0.420594 | 4.2:+54805470 | None:intergenic |
| AATTACCTTCTCCTGTCCTT+GGG | 0.427574 | 4.2:+54810088 | None:intergenic |
| CCGCACGCTTATAGGCTTCA+AGG | 0.429737 | 4.2:+54806938 | None:intergenic |
| ACCTTCTCCTGTCCTTGGGC+AGG | 0.431535 | 4.2:+54810092 | None:intergenic |
| TTGTGAGATGGTGGTGGAGG+AGG | 0.437159 | 4.2:+54806337 | None:intergenic |
| TACTGGATGGGAGCTTGCCC+TGG | 0.437527 | 4.2:-54805982 | MS.gene071438:CDS |
| TGGACATTCAACGTGATTAG+TGG | 0.438730 | 4.2:+54812045 | None:intergenic |
| GGAATGTCAGGCTGGTGGAC+TGG | 0.439998 | 4.2:-54805576 | MS.gene071438:intron |
| TGCTGCTGCTGATGAGGCTG+AGG | 0.440595 | 4.2:+54805353 | None:intergenic |
| CTGCCATTTGGACAGCGGCC+GGG | 0.440665 | 4.2:+54805423 | None:intergenic |
| CAGCTTCTATATCGACTTGT+TGG | 0.441624 | 4.2:-54809032 | MS.gene071438:CDS |
| AGCCTGGGATTGTTCTGCCT+GGG | 0.446845 | 4.2:-54810201 | MS.gene071438:CDS |
| CAACAGCAAGCGAATCCATT+TGG | 0.449659 | 4.2:-54805395 | MS.gene071438:CDS |
| GCTTTAATAGCTTCATGTCT+TGG | 0.453459 | 4.2:+54806961 | None:intergenic |
| ACAAAAGATTTCGATCCTAC+TGG | 0.455678 | 4.2:-54805999 | MS.gene071438:CDS |
| AACTTCTGCTGTTCGTCCCA+GGG | 0.458247 | 4.2:-54811855 | MS.gene071438:CDS |
| ATTTACTGCGCTATTAATGA+TGG | 0.459826 | 4.2:-54807101 | MS.gene071438:CDS |
| GTACTAACCATCGGCTCACT+TGG | 0.460104 | 4.2:+54806568 | None:intergenic |
| CACCCTCCCTGAGTAACCTA+TGG | 0.461427 | 4.2:+54810454 | None:intergenic |
| AACTGTGGGTAAGGACCAAA+TGG | 0.466710 | 4.2:+54805380 | None:intergenic |
| CTATAAGCGTGCGGGTCAGC+AGG | 0.476852 | 4.2:-54806929 | MS.gene071438:intron |
| GTACATTAGGGAGGCACCCC+GGG | 0.477247 | 4.2:-54806602 | MS.gene071438:CDS |
| GACATGGGCGAGACCAACTT+TGG | 0.477335 | 4.2:+54812195 | None:intergenic |
| TCATCCTTAAAATTTGAAGT+TGG | 0.479396 | 4.2:+54810379 | None:intergenic |
| TTCAGTCAATGAGAGACAAT+TGG | 0.480704 | 4.2:-54805934 | MS.gene071438:intron |
| ATGTTGCTTGATATAGCAAA+TGG | 0.483557 | 4.2:+54805452 | None:intergenic |
| ATCAAGCAACATTGCTCCCC+CGG | 0.485362 | 4.2:-54805441 | MS.gene071438:CDS |
| CACTTGGAACATTAACAACC+CGG | 0.489997 | 4.2:+54806584 | None:intergenic |
| AAGGATGACTCTAGTCCAAT+CGG | 0.491603 | 4.2:-54810364 | MS.gene071438:CDS |
| GCAGAGGATTGGAACTTGCT+AGG | 0.493008 | 4.2:-54806783 | MS.gene071438:CDS |
| CTTAACAGCTTATATGATGA+AGG | 0.493587 | 4.2:-54805542 | MS.gene071438:CDS |
| TGAGGCTGGAACTGTGGGTA+AGG | 0.498922 | 4.2:+54805371 | None:intergenic |
| AACTATGGAAGAGTACATTA+GGG | 0.503486 | 4.2:-54806614 | MS.gene071438:CDS |
| CTTAGATGTCTTTCTTTGGG+TGG | 0.506041 | 4.2:+54812025 | None:intergenic |
| TATAGAAGCTGTTGTAAAGC+AGG | 0.509890 | 4.2:+54809044 | None:intergenic |
| AGAATTTCCTCTCTAAGCGT+TGG | 0.511778 | 4.2:+54810429 | None:intergenic |
| TAGTCATCCATAGGTTACTC+AGG | 0.518273 | 4.2:-54810461 | MS.gene071438:CDS |
| CCGCGTAATCGCTATTGACA+TGG | 0.523311 | 4.2:+54812179 | None:intergenic |
| CGCACGCTTATAGGCTTCAA+GGG | 0.523909 | 4.2:+54806939 | None:intergenic |
| ATATGCTGCTGCTGCTGATG+AGG | 0.524715 | 4.2:+54805347 | None:intergenic |
| ACCCAAACCTGCCCAAGGAC+AGG | 0.527781 | 4.2:-54810099 | MS.gene071438:CDS |
| CATTATCAATCTTGTTGACA+AGG | 0.528067 | 4.2:-54807078 | MS.gene071438:intron |
| ACAATAAGCAACATCAGCCC+TGG | 0.528722 | 4.2:+54811838 | None:intergenic |
| CCGGCCGCTGTCCAAATGGC+AGG | 0.532125 | 4.2:-54805422 | MS.gene071438:CDS |
| TGGTTGTGAGATGGTGGTGG+AGG | 0.535548 | 4.2:+54806334 | None:intergenic |
| TGCTAAGACGCGAAATTGGA+CGG | 0.536350 | 4.2:-54811792 | MS.gene071438:intron |
| CAATGGGTACTCTTCAGTCT+TGG | 0.538882 | 4.2:-54812249 | MS.gene071438:CDS |
| AGCAGGGACACAGCAGGACT+AGG | 0.541151 | 4.2:-54809100 | MS.gene071438:intron |
| ACTTCAAATGGATTTGGGGC+TGG | 0.546087 | 4.2:+54805482 | None:intergenic |
| CATTCCTGCCATTTGGACAG+CGG | 0.548232 | 4.2:+54805418 | None:intergenic |
| GCCATTTGGACAGCGGCCGG+GGG | 0.549447 | 4.2:+54805425 | None:intergenic |
| GATACAATATGCGCTAGCTC+TGG | 0.549765 | 4.2:-54808838 | MS.gene071438:intron |
| TTATTATCACTAGGTTCTGA+TGG | 0.551694 | 4.2:+54806391 | None:intergenic |
| TATCGACTTGTTGGCTGCCG+GGG | 0.556735 | 4.2:-54809023 | MS.gene071438:CDS |
| AAGATTTCGATCCTACTGGA+TGG | 0.558420 | 4.2:-54805995 | MS.gene071438:CDS |
| GCAGGGACACAGCAGGACTA+GGG | 0.563205 | 4.2:-54809099 | MS.gene071438:intron |
| GTCAAAGATACCACCAAAGT+TGG | 0.563537 | 4.2:-54812208 | MS.gene071438:CDS |
| ACCTAATGCATCATCCATAG+AGG | 0.564544 | 4.2:-54806198 | MS.gene071438:CDS |
| AAATGGTTGTGAGATGGTGG+TGG | 0.566222 | 4.2:+54806331 | None:intergenic |
| AGACATACCTCTCTTAAGAC+AGG | 0.571173 | 4.2:+54806748 | None:intergenic |
| TAATGTTCCAAGTGAGCCGA+TGG | 0.572868 | 4.2:-54806575 | MS.gene071438:intron |
| TGAGGCTGAGGCTGGAACTG+TGG | 0.573458 | 4.2:+54805365 | None:intergenic |
| GAGGTGCAGGCTCAGAATTG+GGG | 0.576097 | 4.2:+54806359 | None:intergenic |
| TGTGAATATAGGCACTGCAT+CGG | 0.577289 | 4.2:-54806045 | MS.gene071438:intron |
| AGGTGCAGGCTCAGAATTGG+GGG | 0.577902 | 4.2:+54806360 | None:intergenic |
| GGAAAGAAATGCTCTTGCGC+TGG | 0.578170 | 4.2:-54806177 | MS.gene071438:CDS |
| AGGTCAGAAAACTAACCGAT+TGG | 0.578219 | 4.2:+54810349 | None:intergenic |
| TCAGTTTCCTGTCTTAAGAG+AGG | 0.581783 | 4.2:-54806755 | MS.gene071438:intron |
| ACCTGCCCAAGGACAGGAGA+AGG | 0.586183 | 4.2:-54810093 | MS.gene071438:intron |
| ATGGGCGAGACCAACTTTGG+TGG | 0.590062 | 4.2:+54812198 | None:intergenic |
| AAACACTGATAGTCATCCAT+AGG | 0.590218 | 4.2:-54810470 | MS.gene071438:CDS |
| GTCATGGAATGTCAGGCTGG+TGG | 0.590289 | 4.2:-54805581 | MS.gene071438:intron |
| AGTACATTAGGGAGGCACCC+CGG | 0.591792 | 4.2:-54806603 | MS.gene071438:CDS |
| CACGTTTCACATTATTACCC+CGG | 0.594978 | 4.2:+54809006 | None:intergenic |
| TACCCAGGCAGAACAATCCC+AGG | 0.597737 | 4.2:+54810199 | None:intergenic |
| GACTAGGGATTTAGATAGTG+AGG | 0.598908 | 4.2:-54809084 | MS.gene071438:CDS |
| ACTTGGAACATTAACAACCC+GGG | 0.599939 | 4.2:+54806585 | None:intergenic |
| ATCCATAGGTTACTCAGGGA+GGG | 0.600254 | 4.2:-54810456 | MS.gene071438:CDS |
| CTTGAAGCCTATAAGCGTGC+GGG | 0.602046 | 4.2:-54806937 | MS.gene071438:CDS |
| AGATTTCGATCCTACTGGAT+GGG | 0.602139 | 4.2:-54805994 | MS.gene071438:CDS |
| ATGAACTTCAAATGGATTTG+GGG | 0.604886 | 4.2:+54805478 | None:intergenic |
| GAGGCTGAGGCTGGAACTGT+GGG | 0.606106 | 4.2:+54805366 | None:intergenic |
| GATTTCTATGAAGTTTGCAG+AGG | 0.609916 | 4.2:-54806799 | MS.gene071438:CDS |
| CAATAAGCAACATCAGCCCT+GGG | 0.614387 | 4.2:+54811839 | None:intergenic |
| TCAAAATGGTTGTGAGATGG+TGG | 0.614778 | 4.2:+54806328 | None:intergenic |
| CGCGTAATCGCTATTGACAT+GGG | 0.631037 | 4.2:+54812180 | None:intergenic |
| AGTCATCCATAGGTTACTCA+GGG | 0.631167 | 4.2:-54810460 | MS.gene071438:CDS |
| TATGTAGGGATTGAATGACC+TGG | 0.635485 | 4.2:-54806222 | MS.gene071438:intron |
| GGGTGATCCAACGCTTAGAG+AGG | 0.638082 | 4.2:-54810436 | MS.gene071438:CDS |
| CCTTGAAGCCTATAAGCGTG+CGG | 0.638815 | 4.2:-54806938 | MS.gene071438:CDS |
| CGTCTACCCAAACCTGCCCA+AGG | 0.639108 | 4.2:-54810104 | MS.gene071438:CDS |
| ACTGAAGAAATATCAGTACT+CGG | 0.639433 | 4.2:+54805951 | None:intergenic |
| CATCCATAGGTTACTCAGGG+AGG | 0.645447 | 4.2:-54810457 | MS.gene071438:CDS |
| AGGGCAAGCTCCCATCCAGT+AGG | 0.647054 | 4.2:+54805984 | None:intergenic |
| TAATGCATAGGTACGTACCC+AGG | 0.647422 | 4.2:+54810184 | None:intergenic |
| CTATAAATTACACAGCCAGA+AGG | 0.652759 | 4.2:-54808882 | MS.gene071438:intron |
| CTTGGAACATTAACAACCCG+GGG | 0.656680 | 4.2:+54806586 | None:intergenic |
| GTGTCAAAATGGTTGTGAGA+TGG | 0.662795 | 4.2:+54806325 | None:intergenic |
| GTTGTAAGAAAAGATTGCGG+AGG | 0.668024 | 4.2:+54806634 | None:intergenic |
| GCAGCAACATTATTATCACT+AGG | 0.687838 | 4.2:+54806382 | None:intergenic |
| TATGGAAGAGTACATTAGGG+AGG | 0.705602 | 4.2:-54806611 | MS.gene071438:CDS |
| AGTACTCGGAGTGCTGACCA+GGG | 0.708772 | 4.2:+54805965 | None:intergenic |
| CCATGTCAATAGCGATTACG+CGG | 0.714918 | 4.2:-54812179 | MS.gene071438:intron |
| ATAGTTGTAAGAAAAGATTG+CGG | 0.742982 | 4.2:+54806631 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 54805347 | 54812269 | 54805347 | ID=MS.gene071438 |
| chr4.2 | mRNA | 54805347 | 54812269 | 54805347 | ID=MS.gene071438.t1;Parent=MS.gene071438 |
| chr4.2 | exon | 54812180 | 54812269 | 54812180 | ID=MS.gene071438.t1.exon1;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54812180 | 54812269 | 54812180 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54812023 | 54812092 | 54812023 | ID=MS.gene071438.t1.exon2;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54812023 | 54812092 | 54812023 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54811793 | 54811890 | 54811793 | ID=MS.gene071438.t1.exon3;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54811793 | 54811890 | 54811793 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54810361 | 54810502 | 54810361 | ID=MS.gene071438.t1.exon4;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54810361 | 54810502 | 54810361 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54810094 | 54810221 | 54810094 | ID=MS.gene071438.t1.exon5;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54810094 | 54810221 | 54810094 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54809016 | 54809117 | 54809016 | ID=MS.gene071438.t1.exon6;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54809016 | 54809117 | 54809016 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54808839 | 54808889 | 54808839 | ID=MS.gene071438.t1.exon7;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54808839 | 54808889 | 54808839 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54807079 | 54807144 | 54807079 | ID=MS.gene071438.t1.exon8;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54807079 | 54807144 | 54807079 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54806930 | 54806995 | 54806930 | ID=MS.gene071438.t1.exon9;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54806930 | 54806995 | 54806930 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54806756 | 54806836 | 54806756 | ID=MS.gene071438.t1.exon10;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54806756 | 54806836 | 54806756 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54806576 | 54806656 | 54806576 | ID=MS.gene071438.t1.exon11;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54806576 | 54806656 | 54806576 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54806312 | 54806482 | 54806312 | ID=MS.gene071438.t1.exon12;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54806312 | 54806482 | 54806312 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54806156 | 54806237 | 54806156 | ID=MS.gene071438.t1.exon13;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54806156 | 54806237 | 54806156 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54805935 | 54806056 | 54805935 | ID=MS.gene071438.t1.exon14;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54805935 | 54806056 | 54805935 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| chr4.2 | exon | 54805347 | 54805588 | 54805347 | ID=MS.gene071438.t1.exon15;Parent=MS.gene071438.t1 |
| chr4.2 | CDS | 54805347 | 54805588 | 54805347 | ID=cds.MS.gene071438.t1;Parent=MS.gene071438.t1 |
| Gene Sequence |
| Protein sequence |
