AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07489

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07489.t1 MTR_1g077670 94.215 484 26 2 1 482 1 484 0.0 939
MS.gene07489.t1 MTR_1g077660 81.184 473 82 4 12 482 6 473 0.0 780
MS.gene07489.t1 MTR_7g106260 45.287 435 216 3 52 479 42 461 1.95e-118 356
MS.gene07489.t1 MTR_2g087288 42.651 415 214 5 52 460 37 433 9.63e-114 343
MS.gene07489.t1 MTR_4g051575 42.995 414 202 4 43 447 35 423 6.13e-112 339
MS.gene07489.t1 MTR_1g115140 39.362 376 213 3 48 408 37 412 2.00e-94 296
MS.gene07489.t1 MTR_2g087285 40.488 410 223 6 42 447 27 419 1.03e-91 286
MS.gene07489.t1 MTR_1g115175 42.529 348 189 5 48 388 33 376 2.35e-91 288
MS.gene07489.t1 MTR_4g098570 34.747 495 257 10 44 473 41 534 5.77e-87 276
MS.gene07489.t1 MTR_5g014310 40.922 347 198 3 48 388 53 398 6.98e-85 271
MS.gene07489.t1 MTR_1g115190 41.108 343 196 2 51 388 37 378 2.65e-84 270
MS.gene07489.t1 MTR_7g094770 36.160 401 230 7 56 449 60 441 1.44e-79 254
MS.gene07489.t1 MTR_4g098610 34.375 480 250 7 44 458 41 520 8.62e-79 255
MS.gene07489.t1 MTR_8g104110 35.574 357 212 7 48 389 60 413 2.20e-68 229
MS.gene07489.t1 MTR_4g051575 39.286 308 155 4 150 447 4 289 8.12e-67 218
MS.gene07489.t1 MTR_6g084680 34.908 381 231 7 19 384 48 426 2.18e-66 224
MS.gene07489.t1 MTR_8g104130 37.092 337 206 6 49 383 56 388 1.54e-65 221
MS.gene07489.t1 MTR_1g111250 32.865 356 224 5 46 390 68 419 6.83e-61 208
MS.gene07489.t1 MTR_8g104120 34.270 356 216 7 48 389 56 407 3.08e-60 207
MS.gene07489.t1 MTR_0710s0020 51.020 147 72 0 51 197 37 183 1.91e-41 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07489.t1 AT4G00910 49.032 465 212 6 12 453 9 471 1.28e-158 459
MS.gene07489.t1 AT1G08440 43.276 409 212 3 42 445 3 396 8.65e-116 350
MS.gene07489.t1 AT1G08430 40.757 449 240 5 42 479 3 436 2.10e-113 343
MS.gene07489.t1 AT2G27240 42.169 415 220 4 42 451 3 402 2.79e-113 343
MS.gene07489.t1 AT2G27240 39.683 441 220 4 42 451 3 428 1.14e-109 334
MS.gene07489.t1 AT3G11680 43.508 439 215 5 24 452 8 423 2.05e-108 330
MS.gene07489.t1 AT3G11680 43.508 439 215 5 24 452 10 425 2.51e-108 330
MS.gene07489.t1 AT4G17970 39.344 366 213 3 42 399 29 393 1.81e-92 291
MS.gene07489.t1 AT5G46600 37.845 399 225 4 10 394 8 397 1.35e-90 286
MS.gene07489.t1 AT5G46610 38.636 352 210 2 42 388 31 381 1.61e-85 273
MS.gene07489.t1 AT5G46610 35.227 352 198 3 42 388 31 357 3.11e-72 238
MS.gene07489.t1 AT1G18420 34.439 392 235 7 30 404 58 444 7.28e-69 230
MS.gene07489.t1 AT3G18440 36.066 366 216 8 38 389 65 426 1.43e-68 230
MS.gene07489.t1 AT1G18420 34.153 366 222 6 53 404 1 361 2.08e-65 219
MS.gene07489.t1 AT5G46610 33.239 352 182 3 42 388 31 334 1.23e-61 209
MS.gene07489.t1 AT1G68600 34.648 355 216 7 49 390 45 396 6.49e-61 208
MS.gene07489.t1 AT1G25480 33.596 381 235 9 24 390 29 405 3.55e-59 204
MS.gene07489.t1 AT2G17470 33.618 351 217 7 52 390 31 377 5.96e-59 203
MS.gene07489.t1 AT2G17470 33.618 351 217 7 52 390 53 399 1.17e-58 203
MS.gene07489.t1 AT4G17585 50.000 76 35 2 42 114 29 104 5.09e-16 75.9

Find 88 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATCAAAACGAGCCTTTA+TGG 0.138720 1.2:+63127376 None:intergenic
ACTTGAATTAATTCCATTAT+TGG 0.189011 1.2:+63126150 None:intergenic
TTCAGCTTGGTTTCAATATC+TGG 0.213828 1.2:-63127329 MS.gene07489:CDS
AAAATTCATCCATTGTTTAA+AGG 0.225366 1.2:-63128347 MS.gene07489:CDS
AGGATTTCTACTATTATAAT+TGG 0.227233 1.2:-63127269 MS.gene07489:CDS
GAGCAGGACTCCAACAATTA+TGG 0.249770 1.2:+63127570 None:intergenic
GGCAAGTTTGTCGAGGTTTC+CGG 0.250712 1.2:+63127172 None:intergenic
GTCAAATAAACTTGATAGTT+TGG 0.252810 1.2:-63126286 MS.gene07489:CDS
CGACAAACTTGCCAACTCTT+TGG 0.277455 1.2:-63127162 MS.gene07489:CDS
TGGAAGCAATACCTTAAAAT+TGG 0.285842 1.2:-63126644 MS.gene07489:CDS
GCATGATTATTCGACCTGTT+TGG 0.287777 1.2:-63127223 MS.gene07489:CDS
TCCTGTATTGATGCTCTTGT+TGG 0.297080 1.2:-63126599 MS.gene07489:CDS
AATTGATGAATTGTTTGATA+TGG 0.306438 1.2:-63127300 MS.gene07489:CDS
CATGATTATTCGACCTGTTT+GGG 0.318706 1.2:-63127222 MS.gene07489:CDS
CATTGATACTTCTGTTGCTT+TGG 0.318862 1.2:+63126822 None:intergenic
CTTGAATTAATTCCATTATT+GGG 0.330827 1.2:+63126151 None:intergenic
TCCTAATTATTCAAACAATC+TGG 0.338602 1.2:+63125941 None:intergenic
GTTGCTTCCTCATGCTGGTC+TGG 0.347155 1.2:+63125976 None:intergenic
CTCGCCGGATTTCTAGCCTT+TGG 0.380399 1.2:-63127634 MS.gene07489:CDS
TTGAAACCAAGCTGAAAGTT+AGG 0.380911 1.2:+63127336 None:intergenic
TTCTAGCCTTTGGCGTACAT+TGG 0.406843 1.2:-63127624 MS.gene07489:CDS
GGAGTCCTGCTCTTTCTACT+AGG 0.409608 1.2:-63127559 MS.gene07489:intron
TGATTGTTGCTTCCTCATGC+TGG 0.420856 1.2:+63125971 None:intergenic
AGCAGGACTCCAACAATTAT+GGG 0.421556 1.2:+63127571 None:intergenic
CAAAACGAGCCTTTATGGTT+GGG 0.430411 1.2:+63127381 None:intergenic
TACTTGAATCCTTTGTATGA+TGG 0.432772 1.2:-63128289 MS.gene07489:CDS
AAGATTCATCCCAACCATAA+AGG 0.436098 1.2:-63127390 MS.gene07489:CDS
GAACTAACCTTCCAAAGAGT+TGG 0.438285 1.2:+63127151 None:intergenic
TTCAGGCTAATTTAGCAAGA+TGG 0.439855 1.2:-63126703 MS.gene07489:intron
TTGAAGAAAGCTTGGGAGGT+GGG 0.442474 1.2:-63128385 MS.gene07489:CDS
TCTAGCCTTTGGCGTACATT+GGG 0.446032 1.2:-63127623 MS.gene07489:CDS
CAATTGGAACCCATAATTGT+TGG 0.452675 1.2:-63127580 MS.gene07489:CDS
TCAGGCTAATTTAGCAAGAT+GGG 0.465820 1.2:-63126702 MS.gene07489:intron
GAGTGGTAAAAGTAGTAGAA+TGG 0.468644 1.2:-63128504 MS.gene07489:CDS
TCAAAACGAGCCTTTATGGT+TGG 0.485348 1.2:+63127380 None:intergenic
AGTTCTAGACCAGCCCAAAC+AGG 0.489088 1.2:+63127209 None:intergenic
TTTGAAGAAAGCTTGGGAGG+TGG 0.490681 1.2:-63128386 MS.gene07489:CDS
TCTTAAGACACTTGCAGAGT+TGG 0.491371 1.2:+63126341 None:intergenic
TACGCCAAAGGCTAGAAATC+CGG 0.496244 1.2:+63127630 None:intergenic
AGTAGTAGAATGGAGTATCA+AGG 0.500383 1.2:-63128494 MS.gene07489:CDS
CATTGGGTTGCTAGTAAAGC+AGG 0.502492 1.2:-63127607 MS.gene07489:CDS
CAAAGCAACAGAAGTATCAA+TGG 0.508008 1.2:-63126821 MS.gene07489:intron
AATCTTCTTGATTTCATCTG+AGG 0.508625 1.2:+63126392 None:intergenic
TCCAACAAGAGCATCAATAC+AGG 0.510116 1.2:+63126598 None:intergenic
ATTATTCGACCTGTTTGGGC+TGG 0.512091 1.2:-63127218 MS.gene07489:CDS
TTGTTTAGATTTGTCACACT+TGG 0.515185 1.2:+63126023 None:intergenic
AAAAGTATAAATAGAATATG+TGG 0.516571 1.2:-63127664 MS.gene07489:CDS
AAAGGTAGGAATAGCACTTA+CGG 0.517885 1.2:-63128329 MS.gene07489:CDS
AAACTTGCCAACTCTTTGGA+AGG 0.525053 1.2:-63127158 MS.gene07489:intron
AATCCTTTGTATGATGGAGT+TGG 0.525534 1.2:-63128283 MS.gene07489:CDS
AAATTGAAGCGACCGTGGGC+AGG 0.526155 1.2:+63126677 None:intergenic
TTCATCCATTGTTTAAAGGT+AGG 0.527615 1.2:-63128343 MS.gene07489:CDS
TAGTAAAGCAGGAAAGCAAT+TGG 0.530375 1.2:-63127596 MS.gene07489:CDS
GAGCACAACATCAATGAAAG+TGG 0.530404 1.2:-63126367 MS.gene07489:CDS
ATTTATCCTAACTTTCAGCT+TGG 0.537358 1.2:-63127342 MS.gene07489:CDS
TGGAGTATCAAGGTAGAAGA+TGG 0.555329 1.2:-63128484 MS.gene07489:CDS
CTATTCCTACCTTTAAACAA+TGG 0.566154 1.2:+63128338 None:intergenic
GTAGTCTTTGAGTACACTGC+TGG 0.568453 1.2:-63128226 MS.gene07489:intron
CTTCCAACTCCATCATACAA+AGG 0.572397 1.2:+63128280 None:intergenic
TCAAGGTAGAAGATGGTCCA+TGG 0.576705 1.2:-63128477 MS.gene07489:CDS
GACGAAAATTGAAGCGACCG+TGG 0.583474 1.2:+63126672 None:intergenic
GGAATTAATTCAAGTGGTCA+CGG 0.587654 1.2:-63126142 MS.gene07489:CDS
AATAATGGAATTAATTCAAG+TGG 0.589844 1.2:-63126148 MS.gene07489:CDS
AATGCAAAAGAAACATCCCT+TGG 0.591201 1.2:-63126192 MS.gene07489:CDS
GCAAGATGGGAGCCTGCCCA+CGG 0.596456 1.2:-63126689 MS.gene07489:CDS
GGCTCATGATGACAAGGGAG+TGG 0.596750 1.2:-63128521 MS.gene07489:CDS
TACTGAAACTGTAGCTCGTG+TGG 0.597026 1.2:-63126106 MS.gene07489:CDS
AAATATGGCTCATGATGACA+AGG 0.597714 1.2:-63128527 None:intergenic
CAACTTGAAATAAAGACCTA+CGG 0.608743 1.2:+63128417 None:intergenic
TTATACCTAGTAGAAAGAGC+AGG 0.611127 1.2:+63127554 None:intergenic
AAAGGCTAGAAATCCGGCGA+GGG 0.612317 1.2:+63127636 None:intergenic
ATATGTGGAACTACCCTCGC+CGG 0.614535 1.2:-63127649 MS.gene07489:CDS
AAGAGTTGGCAAGTTTGTCG+AGG 0.616195 1.2:+63127165 None:intergenic
TGTTTGATATGGCACGACAA+AGG 0.616649 1.2:-63127289 MS.gene07489:CDS
ATGTATAAATTCAGAAAACA+AGG 0.617477 1.2:-63126576 MS.gene07489:intron
AGCACAACATCAATGAAAGT+GGG 0.618681 1.2:-63126366 MS.gene07489:CDS
ACGAAAATTGAAGCGACCGT+GGG 0.621590 1.2:+63126673 None:intergenic
TGAAGCTCAATCAGCAAGTG+CGG 0.622011 1.2:-63126887 MS.gene07489:CDS
AGCATGTGTGCATTTACCGT+AGG 0.626002 1.2:-63128433 MS.gene07489:CDS
GGAAGCACATCTACGCATTG+TGG 0.638545 1.2:+63126619 None:intergenic
GTACTCAAAGACTACTACCA+CGG 0.644472 1.2:+63128234 None:intergenic
AGCAACCCAATGTACGCCAA+AGG 0.653502 1.2:+63127618 None:intergenic
GAGTTGGAAGAAATGCTATG+TGG 0.671160 1.2:-63128267 MS.gene07489:CDS
AGTTGGAAGAAATGCTATGT+GGG 0.673533 1.2:-63128266 MS.gene07489:CDS
GATCTTGCCAGACCAGCATG+AGG 0.682092 1.2:-63125983 MS.gene07489:CDS
CAAAGGCTAGAAATCCGGCG+AGG 0.687693 1.2:+63127635 None:intergenic
AATATGGCTCATGATGACAA+GGG 0.739992 1.2:-63128526 MS.gene07489:CDS
TATGTGGGCAGTCATGACCG+TGG 0.821986 1.2:-63128251 MS.gene07489:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAACAACTAAAATT+AGG + chr1.2:63126368-63126387 None:intergenic 10.0%
!!! ACATTATTTATTTTTATAGA+AGG - chr1.2:63127498-63127517 MS.gene07489:intron 10.0%
!! AAAATAATTAAATGTACCTT+AGG + chr1.2:63128055-63128074 None:intergenic 15.0%
!! AAATAATTAAATGTACCTTA+GGG + chr1.2:63128054-63128073 None:intergenic 15.0%
!! CATACTAATAATATTATTGT+TGG + chr1.2:63126955-63126974 None:intergenic 15.0%
!! TAGAATAATGAAATTATAGA+CGG + chr1.2:63126300-63126319 None:intergenic 15.0%
!! TTAAAGACTAAGTATATTAT+GGG - chr1.2:63127431-63127450 MS.gene07489:intron 15.0%
!! TTTAAAGACTAAGTATATTA+TGG - chr1.2:63127430-63127449 MS.gene07489:intron 15.0%
!! TTTATATCAAAAATGTTGTA+TGG + chr1.2:63126543-63126562 None:intergenic 15.0%
!!! AAAAGTATAAATAGAATATG+TGG - chr1.2:63126810-63126829 MS.gene07489:intron 15.0%
!!! AAATATCATTGATTAATTTC+AGG - chr1.2:63127754-63127773 MS.gene07489:intron 15.0%
!!! TTAATTTAAGGTCAAAATTA+TGG - chr1.2:63126410-63126429 MS.gene07489:intron 15.0%
!! AAAATTCATCCATTGTTTAA+AGG - chr1.2:63126127-63126146 MS.gene07489:CDS 20.0%
!! AATTGATGAATTGTTTGATA+TGG - chr1.2:63127174-63127193 MS.gene07489:CDS 20.0%
!! ACTTGAATTAATTCCATTAT+TGG + chr1.2:63128327-63128346 None:intergenic 20.0%
!! AGGATTTCTACTATTATAAT+TGG - chr1.2:63127205-63127224 MS.gene07489:CDS 20.0%
!! ATGTATAAATTCAGAAAACA+AGG - chr1.2:63127898-63127917 MS.gene07489:intron 20.0%
!! ATTACAATGTATATGAATCT+TGG - chr1.2:63127002-63127021 MS.gene07489:intron 20.0%
!! CTTGAATTAATTCCATTATT+GGG + chr1.2:63128326-63128345 None:intergenic 20.0%
!! GCAATTATACAAAATAACTT+TGG - chr1.2:63127935-63127954 MS.gene07489:intron 20.0%
!! GTCTATAATTTCATTATTCT+AGG - chr1.2:63126299-63126318 MS.gene07489:CDS 20.0%
!! GTTAATCACATGTAAAATTA+TGG + chr1.2:63126707-63126726 None:intergenic 20.0%
!! TAAAGACTAAGTATATTATG+GGG - chr1.2:63127432-63127451 MS.gene07489:intron 20.0%
!! TTAATCACGTTAAAAAAATG+TGG - chr1.2:63126577-63126596 MS.gene07489:CDS 20.0%
!!! AAGTTATTTTGTATAATTGC+TGG + chr1.2:63127935-63127954 None:intergenic 20.0%
!!! AATAATGGAATTAATTCAAG+TGG - chr1.2:63128326-63128345 MS.gene07489:CDS 20.0%
! AAAAATGGAAATCCCAATAA+TGG - chr1.2:63128311-63128330 MS.gene07489:CDS 25.0%
! AATAACGTGTCTATCTATTA+AGG + chr1.2:63127409-63127428 None:intergenic 25.0%
! ATAACGTGTCTATCTATTAA+GGG + chr1.2:63127408-63127427 None:intergenic 25.0%
! CAGAGTTAACTGTTAATTTA+AGG - chr1.2:63126398-63126417 MS.gene07489:intron 25.0%
! TATATAGACTATCAAATTGC+AGG - chr1.2:63126774-63126793 MS.gene07489:intron 25.0%
! TTGAATTTATTAGAAACCCT+AGG + chr1.2:63127692-63127711 None:intergenic 25.0%
!! AAACAATGGATGAATTTTCT+TGG + chr1.2:63126125-63126144 None:intergenic 25.0%
!! ATTGTGTACAAATGTGTTTT+AGG - chr1.2:63127546-63127565 MS.gene07489:intron 25.0%
!! ATTTCATTATTCTAGGAGTA+AGG - chr1.2:63126306-63126325 MS.gene07489:CDS 25.0%
!! GTCAAATAAACTTGATAGTT+TGG - chr1.2:63128188-63128207 MS.gene07489:intron 25.0%
!! TTTCATTATTCTAGGAGTAA+GGG - chr1.2:63126307-63126326 MS.gene07489:CDS 25.0%
!!! CAAATTTTTGAAGAAAGCTT+GGG - chr1.2:63126082-63126101 MS.gene07489:CDS 25.0%
AATCTTCTTGATTTCATCTG+AGG + chr1.2:63128085-63128104 None:intergenic 30.0%
ACACTCAGAAAATTCATATG+AGG + chr1.2:63127726-63127745 None:intergenic 30.0%
ACAGTAAGATAATAACCCTA+AGG - chr1.2:63128036-63128055 MS.gene07489:intron 30.0%
ATAATCAAAACGAGCCTTTA+TGG + chr1.2:63127101-63127120 None:intergenic 30.0%
ATGGTGTAGACTTATCTTAA+GGG - chr1.2:63127350-63127369 MS.gene07489:CDS 30.0%
ATTGTATGTGTGTGTACATA+TGG + chr1.2:63126984-63127003 None:intergenic 30.0%
ATTTATCCTAACTTTCAGCT+TGG - chr1.2:63127132-63127151 MS.gene07489:intron 30.0%
CAACTTGAAATAAAGACCTA+CGG + chr1.2:63126060-63126079 None:intergenic 30.0%
CTATTCCTACCTTTAAACAA+TGG + chr1.2:63126139-63126158 None:intergenic 30.0%
GGAGTCTAACAAAAAATTGA+TGG - chr1.2:63127608-63127627 MS.gene07489:CDS 30.0%
TAACTTTGGATAGTGATATG+AGG - chr1.2:63127949-63127968 MS.gene07489:intron 30.0%
TACTTGAATCCTTTGTATGA+TGG - chr1.2:63126185-63126204 MS.gene07489:CDS 30.0%
TGCATTGAAAATTGTGAATG+AGG + chr1.2:63126673-63126692 None:intergenic 30.0%
TGGAAGCAATACCTTAAAAT+TGG - chr1.2:63127830-63127849 MS.gene07489:intron 30.0%
TTCATCCATTGTTTAAAGGT+AGG - chr1.2:63126131-63126150 MS.gene07489:CDS 30.0%
TTGTTTAGATTTGTCACACT+TGG + chr1.2:63128454-63128473 None:intergenic 30.0%
!! GCAAATTTTTGAAGAAAGCT+TGG - chr1.2:63126081-63126100 MS.gene07489:CDS 30.0%
!!! ATAAAGGCTCGTTTTGATTA+TGG - chr1.2:63127100-63127119 MS.gene07489:intron 30.0%
!!! ATTTTAAGGTATTGCTTCCA+TGG + chr1.2:63127830-63127849 None:intergenic 30.0%
!!! TTTTAAGGTATTGCTTCCAT+GGG + chr1.2:63127829-63127848 None:intergenic 30.0%
AAAGGTAGGAATAGCACTTA+CGG - chr1.2:63126145-63126164 MS.gene07489:CDS 35.0%
AAGATTCATCCCAACCATAA+AGG - chr1.2:63127084-63127103 MS.gene07489:intron 35.0%
AATGCAAAAGAAACATCCCT+TGG - chr1.2:63128282-63128301 MS.gene07489:CDS 35.0%
ACCACGTTAAACAGTGAATA+TGG + chr1.2:63126457-63126476 None:intergenic 35.0%
ACCATATTCACTGTTTAACG+TGG - chr1.2:63126453-63126472 MS.gene07489:intron 35.0%
AGCACAACATCAATGAAAGT+GGG - chr1.2:63128108-63128127 MS.gene07489:intron 35.0%
AGTTGGAAGAAATGCTATGT+GGG - chr1.2:63126208-63126227 MS.gene07489:CDS 35.0%
ATGTGATTAACCATGTGTCA+CGG - chr1.2:63126716-63126735 MS.gene07489:intron 35.0%
CAATTGGAACCCATAATTGT+TGG - chr1.2:63126894-63126913 MS.gene07489:CDS 35.0%
CATGATTATTCGACCTGTTT+GGG - chr1.2:63127252-63127271 MS.gene07489:CDS 35.0%
GAGTGGTAAAAGTAGTAGAA+TGG - chr1.2:63125970-63125989 MS.gene07489:CDS 35.0%
GATGGTGTAGACTTATCTTA+AGG - chr1.2:63127349-63127368 MS.gene07489:CDS 35.0%
GGAATTAATTCAAGTGGTCA+CGG - chr1.2:63128332-63128351 MS.gene07489:CDS 35.0%
TAACCATGTGTTGCAGATTA+GGG - chr1.2:63126505-63126524 MS.gene07489:intron 35.0%
TAGTAAAGCAGGAAAGCAAT+TGG - chr1.2:63126878-63126897 MS.gene07489:CDS 35.0%
TCAGGCTAATTTAGCAAGAT+GGG - chr1.2:63127772-63127791 MS.gene07489:intron 35.0%
TTAACCATGTGTTGCAGATT+AGG - chr1.2:63126504-63126523 MS.gene07489:intron 35.0%
TTACTGTATATCGATCGAGA+AGG + chr1.2:63128023-63128042 None:intergenic 35.0%
TTATACCTAGTAGAAAGAGC+AGG + chr1.2:63126923-63126942 None:intergenic 35.0%
TTCAGCTTGGTTTCAATATC+TGG - chr1.2:63127145-63127164 MS.gene07489:intron 35.0%
TTCAGGCTAATTTAGCAAGA+TGG - chr1.2:63127771-63127790 MS.gene07489:intron 35.0%
TTGAAACCAAGCTGAAAGTT+AGG + chr1.2:63127141-63127160 None:intergenic 35.0%
! AATCCTTTGTATGATGGAGT+TGG - chr1.2:63126191-63126210 MS.gene07489:CDS 35.0%
! AGTAGTAGAATGGAGTATCA+AGG - chr1.2:63125980-63125999 MS.gene07489:CDS 35.0%
! CATTGATACTTCTGTTGCTT+TGG + chr1.2:63127655-63127674 None:intergenic 35.0%
! TTGGAAGGTTAGTTCAAAGA+TGG - chr1.2:63127331-63127350 MS.gene07489:CDS 35.0%
!! ATTTTTGAAGAAAGCTTGGG+AGG - chr1.2:63126085-63126104 MS.gene07489:CDS 35.0%
!! CAAAGCAACAGAAGTATCAA+TGG - chr1.2:63127653-63127672 MS.gene07489:CDS 35.0%
!! GGACATTTCTGTTTTGAACT+TGG + chr1.2:63128433-63128452 None:intergenic 35.0%
!! TTCCATTTTTGCATCACCAA+GGG + chr1.2:63128301-63128320 None:intergenic 35.0%
!! TTTCCATTTTTGCATCACCA+AGG + chr1.2:63128302-63128321 None:intergenic 35.0%
!!! CAAATGTGTTTTAGGTTGTG+TGG - chr1.2:63127554-63127573 MS.gene07489:intron 35.0%
!!! GAAATTTTAGCTCTCTTCCA+TGG + chr1.2:63126017-63126036 None:intergenic 35.0%
!!! GAACTCTATGTTTTAGTCAC+CGG - chr1.2:63127283-63127302 MS.gene07489:CDS 35.0%
AAACTTGCCAACTCTTTGGA+AGG - chr1.2:63127316-63127335 MS.gene07489:CDS 40.0%
AGCAGGACTCCAACAATTAT+GGG + chr1.2:63126906-63126925 None:intergenic 40.0%
ATGGTATAAACCAGCTTCCT+AGG - chr1.2:63127672-63127691 MS.gene07489:CDS 40.0%
CAAAACGAGCCTTTATGGTT+GGG + chr1.2:63127096-63127115 None:intergenic 40.0%
CGCCTTAACATAAGTCTCTA+GGG + chr1.2:63127472-63127491 None:intergenic 40.0%
CTTCCAACTCCATCATACAA+AGG + chr1.2:63126197-63126216 None:intergenic 40.0%
GAACTAACCTTCCAAAGAGT+TGG + chr1.2:63127326-63127345 None:intergenic 40.0%
GAGCACAACATCAATGAAAG+TGG - chr1.2:63128107-63128126 MS.gene07489:intron 40.0%
GAGTTGGAAGAAATGCTATG+TGG - chr1.2:63126207-63126226 MS.gene07489:CDS 40.0%
GCATGATTATTCGACCTGTT+TGG - chr1.2:63127251-63127270 MS.gene07489:CDS 40.0%
GTACTCAAAGACTACTACCA+CGG + chr1.2:63126243-63126262 None:intergenic 40.0%
TATTAGAAACCCTAGGAAGC+TGG + chr1.2:63127685-63127704 None:intergenic 40.0%
TCAAAACGAGCCTTTATGGT+TGG + chr1.2:63127097-63127116 None:intergenic 40.0%
TCTTAAGACACTTGCAGAGT+TGG + chr1.2:63128136-63128155 None:intergenic 40.0%
TGCCCTAGAGACTTATGTTA+AGG - chr1.2:63127467-63127486 MS.gene07489:intron 40.0%
TGGTATAAACCAGCTTCCTA+GGG - chr1.2:63127673-63127692 MS.gene07489:CDS 40.0%
TGTTGCAGATTAGGGAAAGT+CGG - chr1.2:63126513-63126532 MS.gene07489:intron 40.0%
TGTTTGATATGGCACGACAA+AGG - chr1.2:63127185-63127204 MS.gene07489:CDS 40.0%
TTTCCCTAATCTGCAACACA+TGG + chr1.2:63126511-63126530 None:intergenic 40.0%
TTTCTCTATTCCGTGACACA+TGG + chr1.2:63126729-63126748 None:intergenic 40.0%
! GCATTGTGGCTCCAATTTTA+AGG + chr1.2:63127844-63127863 None:intergenic 40.0%
! TCCTGTATTGATGCTCTTGT+TGG - chr1.2:63127875-63127894 MS.gene07489:intron 40.0%
! TGGAGTATCAAGGTAGAAGA+TGG - chr1.2:63125990-63126009 MS.gene07489:CDS 40.0%
!! ATCCCTTGGTGATGCAAAAA+TGG - chr1.2:63128296-63128315 MS.gene07489:CDS 40.0%
!! TCCAACAAGAGCATCAATAC+AGG + chr1.2:63127879-63127898 None:intergenic 40.0%
AAGAGTTGGCAAGTTTGTCG+AGG + chr1.2:63127312-63127331 None:intergenic 45.0%
ACGAAAATTGAAGCGACCGT+GGG + chr1.2:63127804-63127823 None:intergenic 45.0%
AGCATGTGTGCATTTACCGT+AGG - chr1.2:63126041-63126060 MS.gene07489:CDS 45.0%
ATTATTCGACCTGTTTGGGC+TGG - chr1.2:63127256-63127275 MS.gene07489:CDS 45.0%
CGACAAACTTGCCAACTCTT+TGG - chr1.2:63127312-63127331 MS.gene07489:CDS 45.0%
GAGCAGGACTCCAACAATTA+TGG + chr1.2:63126907-63126926 None:intergenic 45.0%
GCGCCTTAACATAAGTCTCT+AGG + chr1.2:63127473-63127492 None:intergenic 45.0%
GTAGTCTTTGAGTACACTGC+TGG - chr1.2:63126248-63126267 MS.gene07489:CDS 45.0%
TACGCCAAAGGCTAGAAATC+CGG + chr1.2:63126847-63126866 None:intergenic 45.0%
TACGGAACATTGCTGCAGTT+TGG - chr1.2:63127993-63128012 MS.gene07489:intron 45.0%
TACTGAAACTGTAGCTCGTG+TGG - chr1.2:63128368-63128387 MS.gene07489:CDS 45.0%
TCAAGGTAGAAGATGGTCCA+TGG - chr1.2:63125997-63126016 MS.gene07489:CDS 45.0%
TCGATTGAGCATCACCTCTA+CGG - chr1.2:63127975-63127994 MS.gene07489:intron 45.0%
TGAAGCTCAATCAGCAAGTG+CGG - chr1.2:63127587-63127606 MS.gene07489:CDS 45.0%
TTGAAGAAAGCTTGGGAGGT+GGG - chr1.2:63126089-63126108 MS.gene07489:CDS 45.0%
TTTGAAGAAAGCTTGGGAGG+TGG - chr1.2:63126088-63126107 MS.gene07489:CDS 45.0%
! CATTGGGTTGCTAGTAAAGC+AGG - chr1.2:63126867-63126886 MS.gene07489:CDS 45.0%
! GCTTCAATTTTCGTCACCCA+TGG - chr1.2:63127810-63127829 MS.gene07489:intron 45.0%
! TCTAGCCTTTGGCGTACATT+GGG - chr1.2:63126851-63126870 MS.gene07489:CDS 45.0%
! TGATTGTTGCTTCCTCATGC+TGG + chr1.2:63128506-63128525 None:intergenic 45.0%
! TTCTAGCCTTTGGCGTACAT+TGG - chr1.2:63126850-63126869 MS.gene07489:CDS 45.0%
!!! AATATGATTTTAATAAATTT+TGG + chr1.2:63128245-63128264 None:intergenic 5.0%
AAAGGCTAGAAATCCGGCGA+GGG + chr1.2:63126841-63126860 None:intergenic 50.0%
ACTGCAGCAATGTTCCGTAG+AGG + chr1.2:63127992-63128011 None:intergenic 50.0%
AGCAACCCAATGTACGCCAA+AGG + chr1.2:63126859-63126878 None:intergenic 50.0%
ATATGTGGAACTACCCTCGC+CGG - chr1.2:63126825-63126844 MS.gene07489:CDS 50.0%
GACGAAAATTGAAGCGACCG+TGG + chr1.2:63127805-63127824 None:intergenic 50.0%
GGAGTCCTGCTCTTTCTACT+AGG - chr1.2:63126915-63126934 MS.gene07489:intron 50.0%
GGCAAGTTTGTCGAGGTTTC+CGG + chr1.2:63127305-63127324 None:intergenic 50.0%
! GGAAGCACATCTACGCATTG+TGG + chr1.2:63127858-63127877 None:intergenic 50.0%
!! AGTTCTAGACCAGCCCAAAC+AGG + chr1.2:63127268-63127287 None:intergenic 50.0%
AAATTGAAGCGACCGTGGGC+AGG + chr1.2:63127800-63127819 None:intergenic 55.0%
CAAAGGCTAGAAATCCGGCG+AGG + chr1.2:63126842-63126861 None:intergenic 55.0%
GATCTTGCCAGACCAGCATG+AGG - chr1.2:63128491-63128510 MS.gene07489:CDS 55.0%
GGCTCATGATGACAAGGGAG+TGG - chr1.2:63125953-63125972 MS.gene07489:CDS 55.0%
GTTGCTTCCTCATGCTGGTC+TGG + chr1.2:63128501-63128520 None:intergenic 55.0%
TATGTGGGCAGTCATGACCG+TGG - chr1.2:63126223-63126242 MS.gene07489:CDS 55.0%
!! CTCGCCGGATTTCTAGCCTT+TGG - chr1.2:63126840-63126859 MS.gene07489:CDS 55.0%
GCAAGATGGGAGCCTGCCCA+CGG - chr1.2:63127785-63127804 MS.gene07489:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 63125951 63128545 63125951 ID=MS.gene07489
chr1.2 mRNA 63125951 63128545 63125951 ID=MS.gene07489.t1;Parent=MS.gene07489
chr1.2 exon 63128227 63128545 63128227 ID=MS.gene07489.t1.exon1;Parent=MS.gene07489.t1
chr1.2 CDS 63128227 63128545 63128227 ID=cds.MS.gene07489.t1;Parent=MS.gene07489.t1
chr1.2 exon 63127560 63127700 63127560 ID=MS.gene07489.t1.exon2;Parent=MS.gene07489.t1
chr1.2 CDS 63127560 63127700 63127560 ID=cds.MS.gene07489.t1;Parent=MS.gene07489.t1
chr1.2 exon 63127159 63127431 63127159 ID=MS.gene07489.t1.exon3;Parent=MS.gene07489.t1
chr1.2 CDS 63127159 63127431 63127159 ID=cds.MS.gene07489.t1;Parent=MS.gene07489.t1
chr1.2 exon 63126822 63126928 63126822 ID=MS.gene07489.t1.exon4;Parent=MS.gene07489.t1
chr1.2 CDS 63126822 63126928 63126822 ID=cds.MS.gene07489.t1;Parent=MS.gene07489.t1
chr1.2 exon 63126577 63126720 63126577 ID=MS.gene07489.t1.exon5;Parent=MS.gene07489.t1
chr1.2 CDS 63126577 63126720 63126577 ID=cds.MS.gene07489.t1;Parent=MS.gene07489.t1
chr1.2 exon 63125951 63126415 63125951 ID=MS.gene07489.t1.exon6;Parent=MS.gene07489.t1
chr1.2 CDS 63125951 63126415 63125951 ID=cds.MS.gene07489.t1;Parent=MS.gene07489.t1
Gene Sequence

>MS.gene07489

ATGGCTCATGATGACAAGGGAGTGGTAAAAGTAGTAGAATGGAGTATCAAGGTAGAAGATGGTCCATGGAAGAGAGCTAAAATTTCTTGCAGCATGTGTGCATTTACCGTAGGTCTTTATTTCAAGTTGTGCAAATTTTTGAAGAAAGCTTGGGAGGTGGGTATGAATGATCCAAGAAAATTCATCCATTGTTTAAAGGTAGGAATAGCACTTACGGCTGTGTCACTGTTCTACTACTTGAATCCTTTGTATGATGGAGTTGGAAGAAATGCTATGTGGGCAGTCATGACCGTGGTAGTAGTCTTTGAGTACACTGCTGGTACGTAGTTCTAACAAAATATGAAATCCGTCTATAATTTCATTATTCTAGGAGTAAGGGTTTAAGACATCAAAACTAGAGACAAACTTCAAATTCCTAATTTTAGTTGTTAATTAATGAATTCTTTTCAGAGTTAACTGTTAATTTAAGGTCAAAATTATGGTTAATTCAACTGCATGATTAACCATATTCACTGTTTAACGTGGTCTAAATTAACAATAATTCGTCATGTGATTAACCATGTGTTGCAGATTAGGGAAAGTCGGATGTCCATACAACATTTTTGATATAAAGACTATATATCTAGTTAATCACGTTAAAAAAATGTGGTTAGTTTAATTGAATAGATGATTAATTTAATTCATAGTCAGAATTACAGTTGATTCAACTATATGATTAACCTCATTCACAATTTTCAATGCAATCTAAATTAACCATAATTTTACATGTGATTAACCATGTGTCACGGAATAGAGAAAGTTAGATCTCATAAGACATTTTTGATATATAGACTATCAAATTGCAGGTTCTACTATATACAAAAGTATAAATAGAATATGTGGAACTACCCTCGCCGGATTTCTAGCCTTTGGCGTACATTGGGTTGCTAGTAAAGCAGGAAAGCAATTGGAACCCATAATTGTTGGAGTCCTGCTCTTTCTACTAGGTATAATATTTATAACCAACAATAATATTATTAGTATGTACACACCATATGTACACACACATACAATTACAATGTATATGAATCTTGGTAATTGATCATTGATTACATTATTTCATCTTTGTTTTTAGCTTCTGCAGCGACATTCTCAAGATTCATCCCAACCATAAAGGCTCGTTTTGATTATGGTGTTCTGATATTTATCCTAACTTTCAGCTTGGTTTCAATATCTGGTTATCGAATTGATGAATTGTTTGATATGGCACGACAAAGGATTTCTACTATTATAATTGGTACTTCATTGTGCATAATAGTTAGCATGATTATTCGACCTGTTTGGGCTGGTCTAGAACTCTATGTTTTAGTCACCGGAAACCTCGACAAACTTGCCAACTCTTTGGAAGGTTAGTTCAAAGATGGTGTAGACTTATCTTAAGGGTCTTGCTAACAAGTGTCATACAGATACTTGTGCCCTTAATAGATAGACACGTTATTATTTAAAGACTAAGTATATTATGGGGTTTACTAATTTATGCCCTAGAGACTTATGTTAAGGCGCTCTTTACATTATTTATTTTTATAGAAGGTCTTGTTTATTTCATATATATAATTATTGTGTACAAATGTGTTTTAGGTTGTGTGGCTCAGTATTTTGAAGCTCAATCAGCAAGTGCGGAGTCTAACAAAAAATTGATGGATTACATGTGTGTGCTAAACTCCAAAGCAACAGAAGTATCAATGGTATAAACCAGCTTCCTAGGGTTTCTAATAAATTCAATATATGTATATCCTCATATGAATTTTCTGAGTGTTACTAAAAAAATATCATTGATTAATTTCAGGCTAATTTAGCAAGATGGGAGCCTGCCCACGGTCGCTTCAATTTTCGTCACCCATGGAAGCAATACCTTAAAATTGGAGCCACAATGCGTAGATGTGCTTCCTGTATTGATGCTCTTGTTGGATGTATAAATTCAGAAAACAAGGTAACAAGATAGCCAGCAATTATACAAAATAACTTTGGATAGTGATATGAGGTGATCGATTGAGCATCACCTCTACGGAACATTGCTGCAGTTTGGTCATCCTTCTCGATCGATATACAGTAAGATAATAACCCTAAGGTACATTTAATTATTTTTTGCAGTCCTCAGATGAAATCAAGAAGATTATGAGCACAACATCAATGAAAGTGGGAGCCAACTCTGCAAGTGTCTTAAGAGAGTTATCAATTACAATCAATAATATGACAAAGTCAAATAAACTTGATAGTTTGGTCAAAGAGATGAATATTGCTACACAAGAGCTCCAAAATTTATTAAAATCATATTCAAACACACACAATGTTAATGCAAAAGAAACATCCCTTGGTGATGCAAAAATGGAAATCCCAATAATGGAATTAATTCAAGTGGTCACGGTAGTTTCTTTGCTTACTGAAACTGTAGCTCGTGTGGAAGACATTGTGAAAAGTGTTGAAGAATTATCAACATTAGCCAAGTTCAAAACAGAAATGTCCAAGTGTGACAAATCTAAACAACGTTCAACACAAAATAAGATCTTGCCAGACCAGCATGAGGAAGCAACAATCAAAACTCTCCAGATTGTTTGA
Protein sequence

>MS.gene07489.t1

MAHDDKGVVKVVEWSIKVEDGPWKRAKISCSMCAFTVGLYFKLCKFLKKAWEVGMNDPRKFIHCLKVGIALTAVSLFYYLNPLYDGVGRNAMWAVMTVVVVFEYTAGSTIYKSINRICGTTLAGFLAFGVHWVASKAGKQLEPIIVGVLLFLLASAATFSRFIPTIKARFDYGVLIFILTFSLVSISGYRIDELFDMARQRISTIIIGTSLCIIVSMIIRPVWAGLELYVLVTGNLDKLANSLEGCVAQYFEAQSASAESNKKLMDYMCVLNSKATEVSMANLARWEPAHGRFNFRHPWKQYLKIGATMRRCASCIDALVGCINSENKSSDEIKKIMSTTSMKVGANSASVLRELSITINNMTKSNKLDSLVKEMNIATQELQNLLKSYSNTHNVNAKETSLGDAKMEIPIMELIQVVTVVSLLTETVARVEDIVKSVEELSTLAKFKTEMSKCDKSKQRSTQNKILPDQHEEATIKTLQIV