AlfalfaGEDB | MS.gene07880

M. sativa cultivar XinJiangDaYe / MS.gene07880

KEGG: K13431
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005047 GO:0005488 GO:0005525 GO:0005575 GO:0005785 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0033036 GO:0035639 GO:0036094 GO:0042886 GO:0043021 GO:0043167 GO:0043168 GO:0044877 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0071702 GO:0071705 GO:0097159 GO:0097367 GO:0098796 GO:1901265 GO:1901363
PFAM: PF04086.16

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07880.t1	XP_003610309.1	93.1	145	10	0	1	145	1	145	2.60E-70	275

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07880.t1	Q54ZR7	49.5	99	44	3	1	99	1	93	2.3e-19	97.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07880.t1	G7JGN9	93.1	145	10	0	1	145	1	145	1.8e-70	275.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049193	MS.gene07880	0.803808	2.92E-49	-1.69E-46
MS.gene050213	MS.gene07880	0.814693	1.35E-51	-1.69E-46
MS.gene050414	MS.gene07880	0.803813	2.91E-49	-1.69E-46
MS.gene052307	MS.gene07880	0.822073	2.88E-53	-1.69E-46
MS.gene052609	MS.gene07880	0.826477	2.66E-54	-1.69E-46
MS.gene052775	MS.gene07880	0.800055	1.72E-48	-1.69E-46
MS.gene052776	MS.gene07880	0.824743	6.84E-54	-1.69E-46
MS.gene053143	MS.gene07880	0.818211	2.21E-52	-1.69E-46
MS.gene053620	MS.gene07880	0.820361	7.14E-53	-1.69E-46
MS.gene056519	MS.gene07880	0.806033	1.00E-49	-1.69E-46
MS.gene060933	MS.gene07880	0.827603	1.43E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07880.t1	MTR_4g130770	94.086	186	8	1	1	186	1	183	1.20e-123	362

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07880.t1	AT4G30600	69.613	181	49	2	1	178	1	178	2.03e-81	253
MS.gene07880.t1	AT4G30600	69.613	181	49	2	1	178	1	178	2.03e-81	253

Find 41 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTTGGTCATGCAATGAAAT+TGG	0.219547	8.3:+70889557	MS.gene07880:CDS
TTATCACCTTTCAACACTTT+TGG	0.220142	8.3:-70890062	None:intergenic
CAAGAGGAGGATTAATCCTT+TGG	0.352909	8.3:+70889540	MS.gene07880:CDS
GGCAGTGCTGGTGGTGGCGG+CGG	0.376957	8.3:+70889980	MS.gene07880:CDS
AGTGCTGGTGGTGGCGGCGG+TGG	0.381229	8.3:+70889983	MS.gene07880:CDS
CTGTGGTTGTAGGTGGGAAT+AGG	0.413522	8.3:+70889909	MS.gene07880:CDS
AATGGCAGTGCTGGTGGTGG+CGG	0.423824	8.3:+70889977	MS.gene07880:CDS
AAATCGAATCCTGTGGTTGT+AGG	0.472230	8.3:+70889899	MS.gene07880:CDS
AATTCTGCATCTGCTTTATG+TGG	0.482797	8.3:+70889745	MS.gene07880:CDS
GAGCTGCTTATTCTCTCAAA+TGG	0.492519	8.3:+70889675	MS.gene07880:CDS
CTATTCCCACCTACAACCAC+AGG	0.514029	8.3:-70889908	None:intergenic
GAAATTGGTAACGCTTTGAA+AGG	0.518123	8.3:+70889572	MS.gene07880:CDS
GGATCTGACGGGAAGAAGAA+TGG	0.524281	8.3:+70889959	MS.gene07880:CDS
AAAATCTCGATACACAGTTC+TGG	0.526147	8.3:-70889819	None:intergenic
GGGAAGAAGAATGGCAGTGC+TGG	0.539935	8.3:+70889968	MS.gene07880:CDS
TCGAATCCTGTGGTTGTAGG+TGG	0.540946	8.3:+70889902	MS.gene07880:CDS
TGGAAGGGAGATGGATCTGA+CGG	0.542887	8.3:+70889947	MS.gene07880:CDS
CAATTTCATTGCATGACCAA+AGG	0.546136	8.3:-70889556	None:intergenic
GATTCGATCTTGTCTTCTAG+AGG	0.546611	8.3:+70889613	MS.gene07880:CDS
TGTCTTCTAGAGGAGCGATC+TGG	0.547527	8.3:+70889623	MS.gene07880:CDS
ATCTCGATACACAGTTCTGG+TGG	0.553576	8.3:-70889816	None:intergenic
CAAGTGACATGGAAGGGAGA+TGG	0.559417	8.3:+70889938	MS.gene07880:CDS
TTGAGAGAATAAGCAGCTCC+AGG	0.560375	8.3:-70889671	None:intergenic
GCAGTTGAAGATTGAAGCTG+AGG	0.577891	8.3:+70889856	MS.gene07880:CDS
TGAAGCTGAGGCACGTGCTG+AGG	0.588224	8.3:+70889868	MS.gene07880:CDS
GGCGGTGGTTTGAAGAATGA+TGG	0.588491	8.3:+70889998	MS.gene07880:CDS
TGTTAAGCGTGAATTCTCGC+AGG	0.597191	8.3:+70889784	MS.gene07880:CDS
CGAATCCTGTGGTTGTAGGT+GGG	0.598863	8.3:+70889903	MS.gene07880:CDS
ACCAACCCAAAAGTGTTGAA+AGG	0.600750	8.3:+70890056	MS.gene07880:CDS
GGAAGGGAGATGGATCTGAC+GGG	0.606947	8.3:+70889948	MS.gene07880:CDS
AAACAGCAAGTGACATGGAA+GGG	0.612227	8.3:+70889932	MS.gene07880:CDS
GATCGAATCAATGTATCGAT+CGG	0.615533	8.3:-70889599	None:intergenic
AAGAAGAATGGCAGTGCTGG+TGG	0.616387	8.3:+70889971	MS.gene07880:CDS
GTTTGAAGAATGATGGTGAT+GGG	0.620460	8.3:+70890005	MS.gene07880:CDS
AAGAATGGCAGTGCTGGTGG+TGG	0.622850	8.3:+70889974	MS.gene07880:CDS
TCTTACAATTACGATGCACC+TGG	0.626789	8.3:+70889653	MS.gene07880:CDS
GAAACAGCAAGTGACATGGA+AGG	0.631386	8.3:+70889931	MS.gene07880:CDS
TCTCGATACACAGTTCTGGT+GGG	0.644564	8.3:-70889815	None:intergenic
TTTGAAGAAATCGAATCCTG+TGG	0.647958	8.3:+70889892	MS.gene07880:CDS
ATAGGAAACAGCAAGTGACA+TGG	0.648538	8.3:+70889927	MS.gene07880:CDS
GGTTTGAAGAATGATGGTGA+TGG	0.671022	8.3:+70890004	MS.gene07880:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AAAATCTCGATACACAGTTC+TGG	-	chr8.3:70889822-70889841	None:intergenic	35.0%
	AATTCTGCATCTGCTTTATG+TGG	+	chr8.3:70889745-70889764	MS.gene07880:CDS	35.0%
	CAATTTCATTGCATGACCAA+AGG	-	chr8.3:70889559-70889578	None:intergenic	35.0%
	CTTTGGTCATGCAATGAAAT+TGG	+	chr8.3:70889557-70889576	MS.gene07880:CDS	35.0%
	TTTGAAGAAATCGAATCCTG+TGG	+	chr8.3:70889892-70889911	MS.gene07880:CDS	35.0%
!	GATCGAATCAATGTATCGAT+CGG	-	chr8.3:70889602-70889621	None:intergenic	35.0%
!	GTTTGAAGAATGATGGTGAT+GGG	+	chr8.3:70890005-70890024	MS.gene07880:CDS	35.0%
!	TGGACTTTTCACAATGATCT+AGG	+	chr8.3:70889695-70889714	MS.gene07880:CDS	35.0%
!!	AATGATGGTGATGGGAAAAA+TGG	+	chr8.3:70890013-70890032	MS.gene07880:CDS	35.0%
!!	ATGATGGTGATGGGAAAAAT+GGG	+	chr8.3:70890014-70890033	MS.gene07880:CDS	35.0%
!!	GAAATTGGTAACGCTTTGAA+AGG	+	chr8.3:70889572-70889591	MS.gene07880:CDS	35.0%
!!!	CAGTTACTGATTTTCACAAG+AGG	+	chr8.3:70889524-70889543	MS.gene07880:CDS	35.0%
!!!	TTACTGATTTTCACAAGAGG+AGG	+	chr8.3:70889527-70889546	MS.gene07880:CDS	35.0%
	AAACAGCAAGTGACATGGAA+GGG	+	chr8.3:70889932-70889951	MS.gene07880:CDS	40.0%
	AAATCGAATCCTGTGGTTGT+AGG	+	chr8.3:70889899-70889918	MS.gene07880:CDS	40.0%
	ATAGGAAACAGCAAGTGACA+TGG	+	chr8.3:70889927-70889946	MS.gene07880:CDS	40.0%
	CAAGAGGAGGATTAATCCTT+TGG	+	chr8.3:70889540-70889559	MS.gene07880:CDS	40.0%
	GAGCTGCTTATTCTCTCAAA+TGG	+	chr8.3:70889675-70889694	MS.gene07880:CDS	40.0%
	GATTCGATCTTGTCTTCTAG+AGG	+	chr8.3:70889613-70889632	MS.gene07880:CDS	40.0%
	TCTTACAATTACGATGCACC+TGG	+	chr8.3:70889653-70889672	MS.gene07880:CDS	40.0%
!	GGTTTGAAGAATGATGGTGA+TGG	+	chr8.3:70890004-70890023	MS.gene07880:CDS	40.0%
!!	ACCAACCCAAAAGTGTTGAA+AGG	+	chr8.3:70890056-70890075	MS.gene07880:CDS	40.0%
!!	ACCTTTCAACACTTTTGGGT+TGG	-	chr8.3:70890060-70890079	None:intergenic	40.0%
	GAAACAGCAAGTGACATGGA+AGG	+	chr8.3:70889931-70889950	MS.gene07880:CDS	45.0%
	GCAGTTGAAGATTGAAGCTG+AGG	+	chr8.3:70889856-70889875	MS.gene07880:CDS	45.0%
	TGTTAAGCGTGAATTCTCGC+AGG	+	chr8.3:70889784-70889803	MS.gene07880:CDS	45.0%
	TTGAGAGAATAAGCAGCTCC+AGG	-	chr8.3:70889674-70889693	None:intergenic	45.0%
!	ATCTCGATACACAGTTCTGG+TGG	-	chr8.3:70889819-70889838	None:intergenic	45.0%
!	TCTCGATACACAGTTCTGGT+GGG	-	chr8.3:70889818-70889837	None:intergenic	45.0%
	CAAGTGACATGGAAGGGAGA+TGG	+	chr8.3:70889938-70889957	MS.gene07880:CDS	50.0%
	CGAATCCTGTGGTTGTAGGT+GGG	+	chr8.3:70889903-70889922	MS.gene07880:CDS	50.0%
	CTATTCCCACCTACAACCAC+AGG	-	chr8.3:70889911-70889930	None:intergenic	50.0%
	CTGTGGTTGTAGGTGGGAAT+AGG	+	chr8.3:70889909-70889928	MS.gene07880:CDS	50.0%
	GGATCTGACGGGAAGAAGAA+TGG	+	chr8.3:70889959-70889978	MS.gene07880:CDS	50.0%
	GGCGGTGGTTTGAAGAATGA+TGG	+	chr8.3:70889998-70890017	MS.gene07880:CDS	50.0%
	TCGAATCCTGTGGTTGTAGG+TGG	+	chr8.3:70889902-70889921	MS.gene07880:CDS	50.0%
	TGGAAGGGAGATGGATCTGA+CGG	+	chr8.3:70889947-70889966	MS.gene07880:CDS	50.0%
!	AAGAAGAATGGCAGTGCTGG+TGG	+	chr8.3:70889971-70889990	MS.gene07880:CDS	50.0%
!	TGTCTTCTAGAGGAGCGATC+TGG	+	chr8.3:70889623-70889642	MS.gene07880:CDS	50.0%
	GGAAGGGAGATGGATCTGAC+GGG	+	chr8.3:70889948-70889967	MS.gene07880:CDS	55.0%
	GGGAAGAAGAATGGCAGTGC+TGG	+	chr8.3:70889968-70889987	MS.gene07880:CDS	55.0%
!!	AAGAATGGCAGTGCTGGTGG+TGG	+	chr8.3:70889974-70889993	MS.gene07880:CDS	55.0%
	TGAAGCTGAGGCACGTGCTG+AGG	+	chr8.3:70889868-70889887	MS.gene07880:CDS	60.0%
!!	AATGGCAGTGCTGGTGGTGG+CGG	+	chr8.3:70889977-70889996	MS.gene07880:CDS	60.0%
!!	AGTGCTGGTGGTGGCGGCGG+TGG	+	chr8.3:70889983-70890002	MS.gene07880:CDS	75.0%
!!	GGCAGTGCTGGTGGTGGCGG+CGG	+	chr8.3:70889980-70889999	MS.gene07880:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	70889515	70890081	70889515	ID=MS.gene07880
chr8.3	mRNA	70889515	70890081	70889515	ID=MS.gene07880.t1;Parent=MS.gene07880
chr8.3	exon	70889515	70890081	70889515	ID=MS.gene07880.t1.exon1;Parent=MS.gene07880.t1
chr8.3	CDS	70889515	70890081	70889515	ID=cds.MS.gene07880.t1;Parent=MS.gene07880.t1

Gene Sequence

>MS.gene07880

ATGTTAGAGCAGTTACTGATTTTCACAAGAGGAGGATTAATCCTTTGGTCATGCAATGAAATTGGTAACGCTTTGAAAGGATCGCCGATCGATACATTGATTCGATCTTGTCTTCTAGAGGAGCGATCTGGTGCTGCATCTTACAATTACGATGCACCTGGAGCTGCTTATTCTCTCAAATGGACTTTTCACAATGATCTAGGTCTTGTTTTCGTTGCTGTTTATCAGAGAATTCTGCATCTGCTTTATGTGGATGATTTGCTTGCTGCTGTTAAGCGTGAATTCTCGCAGGTTTATGATCCCACCAGAACTGTGTATCGAGATTTTGATCAGATTTTTAAGCAGTTGAAGATTGAAGCTGAGGCACGTGCTGAGGATTTGAAGAAATCGAATCCTGTGGTTGTAGGTGGGAATAGGAAACAGCAAGTGACATGGAAGGGAGATGGATCTGACGGGAAGAAGAATGGCAGTGCTGGTGGTGGCGGCGGTGGTTTGAAGAATGATGGTGATGGGAAAAATGGGAAGAAGAATTCTGATAATGACCAACCCAAAAGTGTTGAAAGGTGA

Protein sequence

>MS.gene07880.t1

MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYSLKWTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYRDFDQIFKQLKIEAEARAEDLKKSNPVVVGGNRKQQVTWKGDGSDGKKNGSAGGGGGGLKNDGDGKNGKKNSDNDQPKSVER