Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08074.t1 | XP_003594786.1 | 94 | 250 | 15 | 0 | 1 | 250 | 1 | 250 | 1.40E-132 | 482.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08074.t1 | Q9H2J4 | 35.1 | 239 | 144 | 4 | 16 | 250 | 8 | 239 | 4.5e-31 | 136.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08074.t1 | G7IMU2 | 94.0 | 250 | 15 | 0 | 1 | 250 | 1 | 250 | 1.0e-132 | 482.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064894 | MS.gene08074 | PPI |
| MS.gene08074 | MS.gene063165 | PPI |
| MS.gene08074 | MS.gene014281 | PPI |
| MS.gene68222 | MS.gene08074 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08074.t1 | MTR_2g034610 | 94.400 | 250 | 14 | 0 | 1 | 250 | 1 | 250 | 7.27e-167 | 461 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08074.t1 | AT5G14240 | 68.675 | 249 | 75 | 2 | 1 | 246 | 1 | 249 | 1.76e-121 | 346 |
Find 76 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAGGCTCCATCTGATGTT+TGG | 0.202155 | 3.3:-49289906 | MS.gene08074:CDS |
| GGATCAGTGACTCCCATTTC+AGG | 0.234742 | 3.3:-49289952 | MS.gene08074:CDS |
| TTCAAGTTCATCATGGGTTT+TGG | 0.269860 | 3.3:+49290759 | None:intergenic |
| GGTTTGAAAGCGGGTGGTTT+AGG | 0.279660 | 3.3:+49290844 | None:intergenic |
| AATGCAATGCATTGAAGAAT+TGG | 0.297708 | 3.3:-49289751 | MS.gene08074:CDS |
| TATGTTGGTATGACTAGGTT+TGG | 0.325174 | 3.3:-49289609 | MS.gene08074:CDS |
| TACAACAATGGAGCTGTTAA+AGG | 0.339500 | 3.3:-49289636 | MS.gene08074:CDS |
| GCAGGCTCCATCTGATGTTT+GGG | 0.354810 | 3.3:-49289905 | MS.gene08074:CDS |
| ACTGATCCATGATATGTCTT+TGG | 0.361889 | 3.3:+49290783 | None:intergenic |
| AGGAGGAAGATTGCCGAGTT+TGG | 0.379133 | 3.3:+49290864 | None:intergenic |
| TTCATATACAAAGATTTAGA+AGG | 0.380474 | 3.3:-49290916 | MS.gene08074:CDS |
| ATGTTGGTATGACTAGGTTT+GGG | 0.398364 | 3.3:-49289608 | MS.gene08074:CDS |
| GAAGAGGTTAGCTGAGATAC+AGG | 0.399888 | 3.3:-49289998 | MS.gene08074:CDS |
| CTGATCCATGATATGTCTTT+GGG | 0.406150 | 3.3:+49290784 | None:intergenic |
| TATGTCTTTGGGAATGGAAT+CGG | 0.413553 | 3.3:+49290795 | None:intergenic |
| TTGTAATCTTCCTACTTTGT+TGG | 0.414641 | 3.3:-49289661 | MS.gene08074:CDS |
| AAAGGTGGTGGTTTGAAAGC+GGG | 0.425666 | 3.3:+49290835 | None:intergenic |
| CAAGGTCTTCAAGTTCATCA+TGG | 0.429450 | 3.3:+49290752 | None:intergenic |
| TCAAGACAAGCCGTCATTGA+TGG | 0.436184 | 3.3:-49288941 | MS.gene08074:CDS |
| AAGATTACAATCCGGGTAGT+TGG | 0.446274 | 3.3:+49289674 | None:intergenic |
| TACGAAATCAGATCCTGAAA+TGG | 0.446543 | 3.3:+49289939 | None:intergenic |
| TTGATTCCTCGTCTCTGCTC+TGG | 0.446620 | 3.3:+49288960 | None:intergenic |
| CATCATCAAGATCATCTTCA+AGG | 0.452034 | 3.3:+49290734 | None:intergenic |
| TGTAACATTAGGTGTTGCCT+TGG | 0.459416 | 3.3:-49289017 | MS.gene08074:intron |
| AGATTACAATCCGGGTAGTT+GGG | 0.464995 | 3.3:+49289675 | None:intergenic |
| CCATTCCCAAAGACATATCA+TGG | 0.468492 | 3.3:-49290789 | MS.gene08074:CDS |
| AGTCGTCATCACGCTCTTCA+TGG | 0.469623 | 3.3:+49288882 | None:intergenic |
| ATGTCTTTGGGAATGGAATC+GGG | 0.479113 | 3.3:+49290796 | None:intergenic |
| ATCGCTTCCTCCAACAATAC+AGG | 0.489974 | 3.3:-49290711 | MS.gene08074:intron |
| GCTGTTAAAGGAAATTATGT+TGG | 0.493044 | 3.3:-49289624 | MS.gene08074:CDS |
| TCAATGGAAGGGGAGAAAGG+TGG | 0.493474 | 3.3:+49290820 | None:intergenic |
| TTGTCATTCTTTACAAAGAC+GGG | 0.494839 | 3.3:-49289879 | MS.gene08074:intron |
| ATGTTGAGTACCTGTATTGT+TGG | 0.503376 | 3.3:+49290701 | None:intergenic |
| GGGAATGGAATCGGGATCAA+TGG | 0.503524 | 3.3:+49290804 | None:intergenic |
| ACGAAATCAGATCCTGAAAT+GGG | 0.509016 | 3.3:+49289940 | None:intergenic |
| CCATGATATGTCTTTGGGAA+TGG | 0.509087 | 3.3:+49290789 | None:intergenic |
| CTCTGGCCATCATTAAGTAC+AGG | 0.512172 | 3.3:+49288977 | None:intergenic |
| AAGGTCTTCAAGTTCATCAT+GGG | 0.513562 | 3.3:+49290753 | None:intergenic |
| AAAGTAGGAAGATTACAATC+CGG | 0.518629 | 3.3:+49289666 | None:intergenic |
| GGATCAATGGAAGGGGAGAA+AGG | 0.520244 | 3.3:+49290817 | None:intergenic |
| ATGGAAGGGGAGAAAGGTGG+TGG | 0.521086 | 3.3:+49290823 | None:intergenic |
| AAGTAGGAAGATTACAATCC+GGG | 0.522922 | 3.3:+49289667 | None:intergenic |
| GAAAGGTGGTGGTTTGAAAG+CGG | 0.524265 | 3.3:+49290834 | None:intergenic |
| TTGAAAGCGGGTGGTTTAGG+AGG | 0.525651 | 3.3:+49290847 | None:intergenic |
| TCAGATCCTGTACTTAATGA+TGG | 0.527646 | 3.3:-49288983 | MS.gene08074:CDS |
| CATTAAGTACAGGATCTGAT+TGG | 0.532522 | 3.3:+49288987 | None:intergenic |
| ATGGAATCGGGATCAATGGA+AGG | 0.534792 | 3.3:+49290808 | None:intergenic |
| TTAATAGGATTGCTGAATGT+GGG | 0.544779 | 3.3:-49289779 | MS.gene08074:intron |
| TTTAATAGGATTGCTGAATG+TGG | 0.550396 | 3.3:-49289780 | MS.gene08074:intron |
| AATATCGTCCCACTGAGTTG+TGG | 0.560403 | 3.3:+49290891 | None:intergenic |
| GTTGTCATTCTTTACAAAGA+CGG | 0.567372 | 3.3:-49289880 | MS.gene08074:CDS |
| TGATTGTATTCCCAACTACC+CGG | 0.568143 | 3.3:-49289685 | MS.gene08074:CDS |
| GAAATTATGTTGGTATGACT+AGG | 0.574459 | 3.3:-49289614 | MS.gene08074:CDS |
| ACAACCACCCAAACATCAGA+TGG | 0.575121 | 3.3:+49289898 | None:intergenic |
| TAGAAGGTTCCACAACTCAG+TGG | 0.580678 | 3.3:-49290900 | MS.gene08074:CDS |
| GACGATATTCAAACCAAACT+CGG | 0.584334 | 3.3:-49290877 | MS.gene08074:CDS |
| GGGCGAAGATGTACTCCTGA+AGG | 0.592252 | 3.3:-49289588 | MS.gene08074:intron |
| AGGATCTGATTTCGTACGAG+AGG | 0.594647 | 3.3:-49289932 | MS.gene08074:CDS |
| TTGTTGTACACCAACAAAGT+AGG | 0.598040 | 3.3:+49289651 | None:intergenic |
| GGTGGTGGTTTGAAAGCGGG+TGG | 0.598084 | 3.3:+49290838 | None:intergenic |
| TTGAGTACCTGTATTGTTGG+AGG | 0.598827 | 3.3:+49290704 | None:intergenic |
| AGAAGGTTCCACAACTCAGT+GGG | 0.601724 | 3.3:-49290899 | MS.gene08074:CDS |
| TTTGCTATGATAGGAAGAAG+AGG | 0.602112 | 3.3:-49290014 | MS.gene08074:intron |
| ACTTTGTTGGTGTACAACAA+TGG | 0.603280 | 3.3:-49289648 | MS.gene08074:CDS |
| GTACAGGATCTGATTGGCAC+AGG | 0.609831 | 3.3:+49288993 | None:intergenic |
| GGAATCGGGATCAATGGAAG+GGG | 0.612040 | 3.3:+49290810 | None:intergenic |
| ATCTGATTGGCACAGGACCA+AGG | 0.615196 | 3.3:+49289000 | None:intergenic |
| TGGAATCGGGATCAATGGAA+GGG | 0.621079 | 3.3:+49290809 | None:intergenic |
| CTTGCGAACTCCATCAATGA+CGG | 0.628030 | 3.3:+49288931 | None:intergenic |
| GGCTCCATCTGATGTTTGGG+TGG | 0.631437 | 3.3:-49289902 | MS.gene08074:CDS |
| TCATTGATGGAGTTCGCAAG+AGG | 0.640944 | 3.3:-49288928 | MS.gene08074:CDS |
| TTTCGTACGAGAGGTTTCGC+AGG | 0.649897 | 3.3:-49289923 | MS.gene08074:CDS |
| GTAGTTGGGAATACAATCAG+TGG | 0.658535 | 3.3:+49289689 | None:intergenic |
| TGATGGCCAGAGCAGAGACG+AGG | 0.668974 | 3.3:-49288966 | MS.gene08074:CDS |
| TAATAGGATTGCTGAATGTG+GGG | 0.672574 | 3.3:-49289778 | MS.gene08074:intron |
| GAGGTTAGCTGAGATACAGG+AGG | 0.684485 | 3.3:-49289995 | MS.gene08074:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACAAGAACTTAAAA+AGG | + | chr3.3:49290687-49290706 | None:intergenic | 15.0% |
| !!! | TATTTATTTGATTTGATACA+AGG | - | chr3.3:49289316-49289335 | MS.gene08074:intron | 15.0% |
| !! | AATATACTCGGTATAAATTT+AGG | + | chr3.3:49290488-49290507 | None:intergenic | 20.0% |
| !! | ACAAAACAAGCAAATAATTA+AGG | + | chr3.3:49290765-49290784 | None:intergenic | 20.0% |
| !! | ACAATTACATGATAGAATTA+AGG | - | chr3.3:49290462-49290481 | MS.gene08074:intron | 20.0% |
| !! | CAAAACAAGCAAATAATTAA+GGG | + | chr3.3:49290764-49290783 | None:intergenic | 20.0% |
| !! | TATTAAACTTAGGAAATACT+AGG | + | chr3.3:49290566-49290585 | None:intergenic | 20.0% |
| !! | TTCATATACAAAGATTTAGA+AGG | - | chr3.3:49288883-49288902 | MS.gene08074:CDS | 20.0% |
| !!! | AAATTTCCAATTTTTTCATG+TGG | - | chr3.3:49289133-49289152 | MS.gene08074:intron | 20.0% |
| !!! | AAGTTGTGATTTTTTTATGT+GGG | - | chr3.3:49289196-49289215 | MS.gene08074:intron | 20.0% |
| !!! | AATCAAAATCTAGTTTGTTT+AGG | - | chr3.3:49289293-49289312 | MS.gene08074:intron | 20.0% |
| !!! | AATTTCCAATTTTTTCATGT+GGG | - | chr3.3:49289134-49289153 | MS.gene08074:intron | 20.0% |
| !!! | TAATATTTCCTTTTCAATCA+AGG | + | chr3.3:49290383-49290402 | None:intergenic | 20.0% |
| !!! | TATGTGTTACTATTAAACTT+AGG | + | chr3.3:49290576-49290595 | None:intergenic | 20.0% |
| ! | ACAAGAACTTAAAAAGGTAA+AGG | + | chr3.3:49290681-49290700 | None:intergenic | 25.0% |
| ! | CCAACAAAAAACAATATACT+CGG | + | chr3.3:49290500-49290519 | None:intergenic | 25.0% |
| ! | GAAAACGAATTATAATTTCG+AGG | + | chr3.3:49290442-49290461 | None:intergenic | 25.0% |
| ! | TAAGAGAATTAAATACCTTC+AGG | + | chr3.3:49290229-49290248 | None:intergenic | 25.0% |
| !! | CATGTAGATTTTGTATAGTA+AGG | - | chr3.3:49289554-49289573 | MS.gene08074:intron | 25.0% |
| !!! | AGGATTTTTTTTTTATGCTC+TGG | - | chr3.3:49289336-49289355 | MS.gene08074:intron | 25.0% |
| !!! | CAAGTTGTGATTTTTTTATG+TGG | - | chr3.3:49289195-49289214 | MS.gene08074:intron | 25.0% |
| !!! | TGAAGGTATTTAATTCTCTT+AGG | - | chr3.3:49290228-49290247 | MS.gene08074:intron | 25.0% |
| !!! | TTGTTTTTTGTTGGTGTTTA+TGG | - | chr3.3:49290506-49290525 | MS.gene08074:intron | 25.0% |
| !!! | TTTGCTTGTTTTGTAACATT+AGG | - | chr3.3:49290771-49290790 | MS.gene08074:CDS | 25.0% |
| AAAGTAGGAAGATTACAATC+CGG | + | chr3.3:49290136-49290155 | None:intergenic | 30.0% | |
| AACAACCCACATGAAAAAAT+TGG | + | chr3.3:49289142-49289161 | None:intergenic | 30.0% | |
| AACTTAGGAAATACTAGGAA+AGG | + | chr3.3:49290561-49290580 | None:intergenic | 30.0% | |
| AAGAAAGAAAACATGAGCAA+CGG | + | chr3.3:49290267-49290286 | None:intergenic | 30.0% | |
| AATGCAATGCATTGAAGAAT+TGG | - | chr3.3:49290048-49290067 | MS.gene08074:intron | 30.0% | |
| ACTTAGGAAATACTAGGAAA+GGG | + | chr3.3:49290560-49290579 | None:intergenic | 30.0% | |
| AGAATATTATGTTGGATGTG+TGG | - | chr3.3:49289384-49289403 | MS.gene08074:intron | 30.0% | |
| AGATTTAGAGATTAACGAGT+TGG | - | chr3.3:49289657-49289676 | MS.gene08074:CDS | 30.0% | |
| AGTACTTATAGCAGAAAAGA+TGG | - | chr3.3:49289490-49289509 | MS.gene08074:intron | 30.0% | |
| AGTAGTATCCTTGATTGAAA+AGG | - | chr3.3:49290372-49290391 | MS.gene08074:intron | 30.0% | |
| GAAATTATGTTGGTATGACT+AGG | - | chr3.3:49290185-49290204 | MS.gene08074:intron | 30.0% | |
| GCACAACTTCAACTAAATAA+GGG | + | chr3.3:49290640-49290659 | None:intergenic | 30.0% | |
| GCTGTTAAAGGAAATTATGT+TGG | - | chr3.3:49290175-49290194 | MS.gene08074:intron | 30.0% | |
| GTTGTCATTCTTTACAAAGA+CGG | - | chr3.3:49289919-49289938 | MS.gene08074:CDS | 30.0% | |
| TCTCTTGTGTTCTGTTTAAT+AGG | - | chr3.3:49290005-49290024 | MS.gene08074:intron | 30.0% | |
| TGGTTTCTGATAGAACATTA+TGG | - | chr3.3:49289689-49289708 | MS.gene08074:CDS | 30.0% | |
| TTAATAGGATTGCTGAATGT+GGG | - | chr3.3:49290020-49290039 | MS.gene08074:intron | 30.0% | |
| TTGTAATCTTCCTACTTTGT+TGG | - | chr3.3:49290138-49290157 | MS.gene08074:intron | 30.0% | |
| TTGTCATTCTTTACAAAGAC+GGG | - | chr3.3:49289920-49289939 | MS.gene08074:CDS | 30.0% | |
| TTTAATAGGATTGCTGAATG+TGG | - | chr3.3:49290019-49290038 | MS.gene08074:intron | 30.0% | |
| TTTAGGTATTAGAGAGAGTT+GGG | - | chr3.3:49289465-49289484 | MS.gene08074:intron | 30.0% | |
| ! | ATACAGGTACTCAACATTTT+CGG | - | chr3.3:49289104-49289123 | MS.gene08074:intron | 30.0% |
| ! | ATCTTCACAAATTTTGTTGC+AGG | + | chr3.3:49290085-49290104 | None:intergenic | 30.0% |
| ! | ATTTGGCAATGTAGTGTTTT+AGG | - | chr3.3:49289267-49289286 | MS.gene08074:intron | 30.0% |
| ! | GTCTCTCTTATAGTTTTTCT+AGG | + | chr3.3:49289628-49289647 | None:intergenic | 30.0% |
| ! | TTTGGCAATGTAGTGTTTTA+GGG | - | chr3.3:49289268-49289287 | MS.gene08074:intron | 30.0% |
| !! | TTGAGTCATTTTGCTATGAT+AGG | - | chr3.3:49289776-49289795 | MS.gene08074:intron | 30.0% |
| !!! | CCGAGTATATTGTTTTTTGT+TGG | - | chr3.3:49290497-49290516 | MS.gene08074:intron | 30.0% |
| !!! | TATTGTGTCACTTTTTTTCC+AGG | - | chr3.3:49289231-49289250 | MS.gene08074:intron | 30.0% |
| !!! | TGGTATTTTGATTAGTGTAG+CGG | - | chr3.3:49289356-49289375 | MS.gene08074:intron | 30.0% |
| AAGTAGGAAGATTACAATCC+GGG | + | chr3.3:49290135-49290154 | None:intergenic | 35.0% | |
| ACGAAATCAGATCCTGAAAT+GGG | + | chr3.3:49289862-49289881 | None:intergenic | 35.0% | |
| ACTGATCCATGATATGTCTT+TGG | + | chr3.3:49289019-49289038 | None:intergenic | 35.0% | |
| ACTTTGTTGGTGTACAACAA+TGG | - | chr3.3:49290151-49290170 | MS.gene08074:intron | 35.0% | |
| ATGTTGAGTACCTGTATTGT+TGG | + | chr3.3:49289101-49289120 | None:intergenic | 35.0% | |
| ATGTTGGTATGACTAGGTTT+GGG | - | chr3.3:49290191-49290210 | MS.gene08074:intron | 35.0% | |
| CAAATTCAAGTGCATTAACC+TGG | + | chr3.3:49289252-49289271 | None:intergenic | 35.0% | |
| CAGGTTAATGCACTTGAATT+TGG | - | chr3.3:49289250-49289269 | MS.gene08074:intron | 35.0% | |
| CATCATCAAGATCATCTTCA+AGG | + | chr3.3:49289068-49289087 | None:intergenic | 35.0% | |
| CATTAAGTACAGGATCTGAT+TGG | + | chr3.3:49290815-49290834 | None:intergenic | 35.0% | |
| CTGATCCATGATATGTCTTT+GGG | + | chr3.3:49289018-49289037 | None:intergenic | 35.0% | |
| GACGATATTCAAACCAAACT+CGG | - | chr3.3:49288922-49288941 | MS.gene08074:CDS | 35.0% | |
| GGCACAACTTCAACTAAATA+AGG | + | chr3.3:49290641-49290660 | None:intergenic | 35.0% | |
| GTTTAGGTATTAGAGAGAGT+TGG | - | chr3.3:49289464-49289483 | MS.gene08074:intron | 35.0% | |
| TAATAGGATTGCTGAATGTG+GGG | - | chr3.3:49290021-49290040 | MS.gene08074:intron | 35.0% | |
| TACAACAATGGAGCTGTTAA+AGG | - | chr3.3:49290163-49290182 | MS.gene08074:intron | 35.0% | |
| TACGAAATCAGATCCTGAAA+TGG | + | chr3.3:49289863-49289882 | None:intergenic | 35.0% | |
| TATGTTGGTATGACTAGGTT+TGG | - | chr3.3:49290190-49290209 | MS.gene08074:intron | 35.0% | |
| TCAGATCCTGTACTTAATGA+TGG | - | chr3.3:49290816-49290835 | MS.gene08074:CDS | 35.0% | |
| TTAGGTATTAGAGAGAGTTG+GGG | - | chr3.3:49289466-49289485 | MS.gene08074:intron | 35.0% | |
| TTGTTGTACACCAACAAAGT+AGG | + | chr3.3:49290151-49290170 | None:intergenic | 35.0% | |
| TTTCTTTGTGGCTGAAATGA+TGG | - | chr3.3:49289162-49289181 | MS.gene08074:intron | 35.0% | |
| ! | AAGGTCTTCAAGTTCATCAT+GGG | + | chr3.3:49289049-49289068 | None:intergenic | 35.0% |
| ! | AGCATTTGATCTAGGACTAT+AGG | + | chr3.3:49290419-49290438 | None:intergenic | 35.0% |
| ! | ATGGCTTAATTTTATCCACC+TGG | - | chr3.3:49289708-49289727 | MS.gene08074:CDS | 35.0% |
| ! | GGTGTTTATGGAATTTTCTC+TGG | - | chr3.3:49290518-49290537 | MS.gene08074:intron | 35.0% |
| ! | TAAAAAGGTAAAGGTGTGCA+AGG | + | chr3.3:49290672-49290691 | None:intergenic | 35.0% |
| ! | TAACGAGTTGGATCGAAATA+TGG | - | chr3.3:49289669-49289688 | MS.gene08074:CDS | 35.0% |
| ! | TATGTCTTTGGGAATGGAAT+CGG | + | chr3.3:49289007-49289026 | None:intergenic | 35.0% |
| ! | TTTGCTATGATAGGAAGAAG+AGG | - | chr3.3:49289785-49289804 | MS.gene08074:intron | 35.0% |
| !! | TTCAAGTTCATCATGGGTTT+TGG | + | chr3.3:49289043-49289062 | None:intergenic | 35.0% |
| !!! | ATGTGGGTTGTTTTTCTTTG+TGG | - | chr3.3:49289150-49289169 | MS.gene08074:intron | 35.0% |
| !!! | GGTATTTTGATTAGTGTAGC+GGG | - | chr3.3:49289357-49289376 | MS.gene08074:intron | 35.0% |
| !!! | GTATTTTGATTAGTGTAGCG+GGG | - | chr3.3:49289358-49289377 | MS.gene08074:intron | 35.0% |
| AAACTACGCTTAGGTGGTTT+GGG | - | chr3.3:49289516-49289535 | MS.gene08074:intron | 40.0% | |
| AAGATTACAATCCGGGTAGT+TGG | + | chr3.3:49290128-49290147 | None:intergenic | 40.0% | |
| AGATTACAATCCGGGTAGTT+GGG | + | chr3.3:49290127-49290146 | None:intergenic | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+CGG | - | chr3.3:49289570-49289589 | MS.gene08074:intron | 40.0% | |
| AGTCACATCACTAGAGCTAT+AGG | - | chr3.3:49289598-49289617 | MS.gene08074:CDS | 40.0% | |
| CCATTCCCAAAGACATATCA+TGG | - | chr3.3:49289010-49289029 | MS.gene08074:intron | 40.0% | |
| CGGGGATGAGAATATTATGT+TGG | - | chr3.3:49289376-49289395 | MS.gene08074:intron | 40.0% | |
| GCTTAAAGAACACTGACAAC+AGG | + | chr3.3:49290299-49290318 | None:intergenic | 40.0% | |
| GTAGTTGGGAATACAATCAG+TGG | + | chr3.3:49290113-49290132 | None:intergenic | 40.0% | |
| GTGGTGAGATTAGACGATAT+AGG | - | chr3.3:49289403-49289422 | MS.gene08074:intron | 40.0% | |
| TGATTGTATTCCCAACTACC+CGG | - | chr3.3:49290114-49290133 | MS.gene08074:intron | 40.0% | |
| TTGAGTACCTGTATTGTTGG+AGG | + | chr3.3:49289098-49289117 | None:intergenic | 40.0% | |
| TTTGTCTGTGAGATGCTGAT+AGG | + | chr3.3:49290611-49290630 | None:intergenic | 40.0% | |
| ! | AAAGGTGTGCAAGGAATCAA+GGG | + | chr3.3:49290663-49290682 | None:intergenic | 40.0% |
| ! | ATGTCTTTGGGAATGGAATC+GGG | + | chr3.3:49289006-49289025 | None:intergenic | 40.0% |
| ! | CAAGGTCTTCAAGTTCATCA+TGG | + | chr3.3:49289050-49289069 | None:intergenic | 40.0% |
| ! | CCATGATATGTCTTTGGGAA+TGG | + | chr3.3:49289013-49289032 | None:intergenic | 40.0% |
| ! | TAAAGGTGTGCAAGGAATCA+AGG | + | chr3.3:49290664-49290683 | None:intergenic | 40.0% |
| ! | TGTAACATTAGGTGTTGCCT+TGG | - | chr3.3:49290782-49290801 | MS.gene08074:CDS | 40.0% |
| !! | TTTCGAGGAGCATTTGATCT+AGG | + | chr3.3:49290427-49290446 | None:intergenic | 40.0% |
| !!! | GCAGCTAAAGTTTTGAGGTT+TGG | - | chr3.3:49289826-49289845 | MS.gene08074:intron | 40.0% |
| !!! | TCTCTGGCTTTGAAGCTTTT+AGG | - | chr3.3:49290534-49290553 | MS.gene08074:intron | 40.0% |
| AAGGTGTGCAAGGAATCAAG+GGG | + | chr3.3:49290662-49290681 | None:intergenic | 45.0% | |
| AATATCGTCCCACTGAGTTG+TGG | + | chr3.3:49288911-49288930 | None:intergenic | 45.0% | |
| ACAACCACCCAAACATCAGA+TGG | + | chr3.3:49289904-49289923 | None:intergenic | 45.0% | |
| ACGACAACATTAGAGAGAGC+TGG | - | chr3.3:49289433-49289452 | MS.gene08074:intron | 45.0% | |
| AGAAGGTTCCACAACTCAGT+GGG | - | chr3.3:49288900-49288919 | MS.gene08074:CDS | 45.0% | |
| AGATGGTCGAAACTACGCTT+AGG | - | chr3.3:49289507-49289526 | MS.gene08074:intron | 45.0% | |
| AGGATCTGATTTCGTACGAG+AGG | - | chr3.3:49289867-49289886 | MS.gene08074:intron | 45.0% | |
| ATCGCTTCCTCCAACAATAC+AGG | - | chr3.3:49289088-49289107 | MS.gene08074:intron | 45.0% | |
| ATGGAATCGGGATCAATGGA+AGG | + | chr3.3:49288994-49289013 | None:intergenic | 45.0% | |
| CGACAACATTAGAGAGAGCT+GGG | - | chr3.3:49289434-49289453 | MS.gene08074:intron | 45.0% | |
| CTCTGGCCATCATTAAGTAC+AGG | + | chr3.3:49290825-49290844 | None:intergenic | 45.0% | |
| CTTGCGAACTCCATCAATGA+CGG | + | chr3.3:49290871-49290890 | None:intergenic | 45.0% | |
| GAAACTACGCTTAGGTGGTT+TGG | - | chr3.3:49289515-49289534 | MS.gene08074:intron | 45.0% | |
| GACAACATTAGAGAGAGCTG+GGG | - | chr3.3:49289435-49289454 | MS.gene08074:intron | 45.0% | |
| TAGAAGGTTCCACAACTCAG+TGG | - | chr3.3:49288899-49288918 | MS.gene08074:CDS | 45.0% | |
| TCAAGACAAGCCGTCATTGA+TGG | - | chr3.3:49290858-49290877 | MS.gene08074:CDS | 45.0% | |
| TCATTGATGGAGTTCGCAAG+AGG | - | chr3.3:49290871-49290890 | MS.gene08074:CDS | 45.0% | |
| TGGAATCGGGATCAATGGAA+GGG | + | chr3.3:49288993-49289012 | None:intergenic | 45.0% | |
| ! | AAAGGTGGTGGTTTGAAAGC+GGG | + | chr3.3:49288967-49288986 | None:intergenic | 45.0% |
| ! | AGGAGGCAGCTAAAGTTTTG+AGG | - | chr3.3:49289821-49289840 | MS.gene08074:intron | 45.0% |
| ! | GAAAGGTGGTGGTTTGAAAG+CGG | + | chr3.3:49288968-49288987 | None:intergenic | 45.0% |
| ! | GAAGAGGTTAGCTGAGATAC+AGG | - | chr3.3:49289801-49289820 | MS.gene08074:intron | 45.0% |
| ! | TTTATCCACCTGGTGTCAAC+AGG | - | chr3.3:49289718-49289737 | MS.gene08074:CDS | 45.0% |
| !! | AGAGCTGGGGTAGTTTGTTT+AGG | - | chr3.3:49289448-49289467 | MS.gene08074:intron | 45.0% |
| AAGGAGAGTAGATCAGACGG+AGG | - | chr3.3:49289573-49289592 | MS.gene08074:intron | 50.0% | |
| AGGAGGAAGATTGCCGAGTT+TGG | + | chr3.3:49288938-49288957 | None:intergenic | 50.0% | |
| AGTCGTCATCACGCTCTTCA+TGG | + | chr3.3:49290920-49290939 | None:intergenic | 50.0% | |
| ATCTGATTGGCACAGGACCA+AGG | + | chr3.3:49290802-49290821 | None:intergenic | 50.0% | |
| GCAGGCTCCATCTGATGTTT+GGG | - | chr3.3:49289894-49289913 | MS.gene08074:CDS | 50.0% | |
| GGAATCGGGATCAATGGAAG+GGG | + | chr3.3:49288992-49289011 | None:intergenic | 50.0% | |
| GGATCAATGGAAGGGGAGAA+AGG | + | chr3.3:49288985-49289004 | None:intergenic | 50.0% | |
| GGATCAGTGACTCCCATTTC+AGG | - | chr3.3:49289847-49289866 | MS.gene08074:intron | 50.0% | |
| GGGAATGGAATCGGGATCAA+TGG | + | chr3.3:49288998-49289017 | None:intergenic | 50.0% | |
| GGTTTGAAAGCGGGTGGTTT+AGG | + | chr3.3:49288958-49288977 | None:intergenic | 50.0% | |
| GTACAGGATCTGATTGGCAC+AGG | + | chr3.3:49290809-49290828 | None:intergenic | 50.0% | |
| TCAATGGAAGGGGAGAAAGG+TGG | + | chr3.3:49288982-49289001 | None:intergenic | 50.0% | |
| TGGTCGAAACTACGCTTAGG+TGG | - | chr3.3:49289510-49289529 | MS.gene08074:intron | 50.0% | |
| TTGAAAGCGGGTGGTTTAGG+AGG | + | chr3.3:49288955-49288974 | None:intergenic | 50.0% | |
| TTGATTCCTCGTCTCTGCTC+TGG | + | chr3.3:49290842-49290861 | None:intergenic | 50.0% | |
| TTTCGTACGAGAGGTTTCGC+AGG | - | chr3.3:49289876-49289895 | MS.gene08074:intron | 50.0% | |
| ! | GAGGTTAGCTGAGATACAGG+AGG | - | chr3.3:49289804-49289823 | MS.gene08074:intron | 50.0% |
| ACATGAGCAACGGAGCTTGC+AGG | + | chr3.3:49290257-49290276 | None:intergenic | 55.0% | |
| ATGGAAGGGGAGAAAGGTGG+TGG | + | chr3.3:49288979-49288998 | None:intergenic | 55.0% | |
| CAACACCACCTGTTGACACC+AGG | + | chr3.3:49289729-49289748 | None:intergenic | 55.0% | |
| CGCAGGCTCCATCTGATGTT+TGG | - | chr3.3:49289893-49289912 | MS.gene08074:CDS | 55.0% | |
| GGCTCCATCTGATGTTTGGG+TGG | - | chr3.3:49289897-49289916 | MS.gene08074:CDS | 55.0% | |
| GGGCGAAGATGTACTCCTGA+AGG | - | chr3.3:49290211-49290230 | MS.gene08074:intron | 55.0% | |
| ! | ATCCACCTGGTGTCAACAGG+TGG | - | chr3.3:49289721-49289740 | MS.gene08074:CDS | 55.0% |
| CACCACCTGTTGACACCAGG+TGG | + | chr3.3:49289726-49289745 | None:intergenic | 60.0% | |
| TGATGGCCAGAGCAGAGACG+AGG | - | chr3.3:49290833-49290852 | MS.gene08074:CDS | 60.0% | |
| ! | GGTGGTGGTTTGAAAGCGGG+TGG | + | chr3.3:49288964-49288983 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 49288868 | 49290953 | 49288868 | ID=MS.gene08074 |
| chr3.3 | mRNA | 49288868 | 49290953 | 49288868 | ID=MS.gene08074.t1;Parent=MS.gene08074 |
| chr3.3 | exon | 49290712 | 49290953 | 49290712 | ID=MS.gene08074.t1.exon1;Parent=MS.gene08074.t1 |
| chr3.3 | CDS | 49290712 | 49290953 | 49290712 | ID=cds.MS.gene08074.t1;Parent=MS.gene08074.t1 |
| chr3.3 | exon | 49289880 | 49290023 | 49289880 | ID=MS.gene08074.t1.exon2;Parent=MS.gene08074.t1 |
| chr3.3 | CDS | 49289880 | 49290023 | 49289880 | ID=cds.MS.gene08074.t1;Parent=MS.gene08074.t1 |
| chr3.3 | exon | 49289589 | 49289794 | 49289589 | ID=MS.gene08074.t1.exon3;Parent=MS.gene08074.t1 |
| chr3.3 | CDS | 49289589 | 49289794 | 49289589 | ID=cds.MS.gene08074.t1;Parent=MS.gene08074.t1 |
| chr3.3 | exon | 49288868 | 49289028 | 49288868 | ID=MS.gene08074.t1.exon4;Parent=MS.gene08074.t1 |
| chr3.3 | CDS | 49288868 | 49289028 | 49288868 | ID=cds.MS.gene08074.t1;Parent=MS.gene08074.t1 |
| Gene Sequence |
| Protein sequence |
