AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08263

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08263.t1 MTR_8g080090 99.257 269 2 0 1 269 1 269 2.02e-178 492
MS.gene08263.t1 MTR_5g092010 93.956 182 8 3 1 181 1 180 8.70e-111 321
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08263.t1 AT5G44500 82.353 153 26 1 1 153 1 152 1.13e-85 256
MS.gene08263.t1 AT5G44500 82.353 153 26 1 1 153 1 152 1.13e-85 256
MS.gene08263.t1 AT4G20440 82.317 164 25 3 1 164 1 160 7.61e-79 239
MS.gene08263.t1 AT4G20440 82.317 164 25 3 1 164 1 160 7.61e-79 239
MS.gene08263.t1 AT4G20440 82.317 164 25 3 1 164 1 160 7.61e-79 239
MS.gene08263.t1 AT4G20440 82.317 164 25 3 1 164 1 160 7.61e-79 239
MS.gene08263.t1 AT4G20440 82.317 164 25 3 1 164 1 160 7.61e-79 239

Find 131 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATGTATTGAAGCATTT+TGG 0.217710 4.2:+15047413 None:intergenic
GGTAGTGGTGTTCCTGTCTT+TGG 0.265332 4.2:-15046700 MS.gene08263:CDS
CGCAAACTTCCACCGGTAAA+AGG 0.268999 4.2:-15047288 MS.gene08263:CDS
TGTTGCTGCTGCTGCTGATT+TGG 0.277019 4.2:+15046649 None:intergenic
CAAGCTCAGCCTGGTCTTGC+TGG 0.294341 4.2:-15047060 MS.gene08263:CDS
GGTCCTCCTCCGCCGCAATT+TGG 0.303202 4.2:-15046847 MS.gene08263:CDS
AGCAGCAGCATTAACAGCTT+TGG 0.339850 4.2:+15047146 None:intergenic
CCTGGAATTGGTCGTGCTGC+TGG 0.347321 4.2:-15047114 MS.gene08263:CDS
CCACCTGGCATACCGGGATA+TGG 0.364348 4.2:+15046922 None:intergenic
CGAGGCGGCCCCTGCATTCC+AGG 0.374487 4.2:+15046745 None:intergenic
TGCTGCTGATTTGGAGGAGG+GGG 0.381635 4.2:+15046658 None:intergenic
CCAGGAGGAGGAGGCATTCC+GGG 0.384559 4.2:+15046721 None:intergenic
ACCAGGAGGAGGAGGCATTC+CGG 0.385922 4.2:+15046720 None:intergenic
TCCTCCTCATCCTGGAATGC+AGG 0.390826 4.2:-15046755 MS.gene08263:CDS
GCTGCTGCTGATTTGGAGGA+GGG 0.392365 4.2:+15046656 None:intergenic
GCTTTGGAGCGAGATTCTTC+AGG 0.394190 4.2:+15047162 None:intergenic
TGCTGCTGCTGATTTGGAGG+AGG 0.400474 4.2:+15046655 None:intergenic
ATCATCTGTCCAGGAGGAGG+TGG 0.414307 4.2:+15046787 None:intergenic
TGCTGCTGCTGCTGATTTGG+AGG 0.415379 4.2:+15046652 None:intergenic
CCTCCTCATCCTGGAATGCA+GGG 0.419349 4.2:-15046754 MS.gene08263:CDS
CCAGGCGGTGGACGCATCAC+TGG 0.423398 4.2:+15046952 None:intergenic
GGCATACCAAATTGCGGCGG+AGG 0.431083 4.2:+15046841 None:intergenic
CCCGGAATGCCTCCTCCTCC+TGG 0.431670 4.2:-15046721 MS.gene08263:CDS
GCTGGTCCTGTTCGTGGTGT+TGG 0.434114 4.2:-15047042 MS.gene08263:CDS
CGTCCACCAGTTTCGTATCC+TGG 0.438982 4.2:-15046982 MS.gene08263:CDS
CCAGCAGCACGACCAATTCC+AGG 0.447795 4.2:+15047114 None:intergenic
TCAACTCGTCGGAAAGTTCA+TGG 0.449599 4.2:-15047358 MS.gene08263:CDS
CGCCACATGAATCTCGTTCT+CGG 0.453535 4.2:-15047327 MS.gene08263:CDS
CGGAGGACCACCTGGCATAC+CGG 0.454726 4.2:+15046915 None:intergenic
GCTATGGCAGGTCCTGGAAT+TGG 0.455744 4.2:-15047126 MS.gene08263:CDS
CCAGGAGGAGGTGGGCCCAT+AGG 0.458526 4.2:+15046796 None:intergenic
CGAGTGTGCGGCGGTCTTCA+CGG 0.461195 4.2:+15047244 None:intergenic
GTTAATGCTGCTGCTATGGC+AGG 0.462069 4.2:-15047138 MS.gene08263:CDS
ATGCAGGGGCCGCCTCGTCC+CGG 0.465963 4.2:-15046739 MS.gene08263:CDS
GGTCCACCAACACCACGAAC+AGG 0.467407 4.2:+15047036 None:intergenic
TCAGTTTGGACAGAGACCTA+TGG 0.472156 4.2:-15046812 MS.gene08263:CDS
CTCATCATCTGTCCAGGAGG+AGG 0.476906 4.2:+15046784 None:intergenic
GGAGGAGGACCACCAGGTCT+CGG 0.477467 4.2:+15046859 None:intergenic
GTTGTTTCCATGACTGTTGA+AGG 0.478145 4.2:-15047195 MS.gene08263:CDS
GCTGCTGCTATGGCAGGTCC+TGG 0.478959 4.2:-15047132 MS.gene08263:CDS
GGTGTTGGTGGACCTGCTCC+TGG 0.479693 4.2:-15047027 MS.gene08263:CDS
GGACCACCAGGATACGAAAC+TGG 0.480349 4.2:+15046976 None:intergenic
GGTCTTGCTGGTCCTGTTCG+TGG 0.480513 4.2:-15047048 MS.gene08263:CDS
CTGGAATTGGTCGTGCTGCT+GGG 0.482553 4.2:-15047113 MS.gene08263:CDS
AGAGGACCTCCTCCTCATCC+TGG 0.484171 4.2:-15046763 MS.gene08263:CDS
TGAATAACTGTCGCCGGAGG+AGG 0.485871 4.2:+15047081 None:intergenic
ATACCAAATTGCGGCGGAGG+AGG 0.486511 4.2:+15046844 None:intergenic
CGTGAAGACCGCCGCACACT+CGG 0.489568 4.2:-15047243 MS.gene08263:CDS
ATGCCATATCCCGGTATGCC+AGG 0.490273 4.2:-15046925 MS.gene08263:CDS
GGTGGCGGACCACCTGGTCT+CGG 0.492011 4.2:+15046895 None:intergenic
CTTGAATTGTTACGCGCATA+CGG 0.496159 4.2:+15047388 None:intergenic
CCTATGGGCCCACCTCCTCC+TGG 0.497010 4.2:-15046796 MS.gene08263:CDS
GAGCGAGATTCTTCAGGAGG+AGG 0.498376 4.2:+15047168 None:intergenic
AGCTGTTAATGCTGCTGCTA+TGG 0.500274 4.2:-15047142 MS.gene08263:CDS
GGAGGAGCAAATTGCGGTGG+CGG 0.503465 4.2:+15046880 None:intergenic
CCAGTGATGCGTCCACCGCC+TGG 0.505301 4.2:-15046952 MS.gene08263:CDS
TGCGGCGGAGGAGGACCACC+AGG 0.508853 4.2:+15046853 None:intergenic
CTCTGTCCAAACTGAGGAGG+GGG 0.509118 4.2:+15046820 None:intergenic
CTTCGCCGCGGAGGAGGAGA+AGG 0.510146 4.2:+15047220 None:intergenic
GGAGGACCACCTGGCATACC+GGG 0.510653 4.2:+15046916 None:intergenic
ATGCCTCCTCCTCCTGGTAG+TGG 0.510791 4.2:-15046715 MS.gene08263:CDS
AATTGCGGTGGCGGACCACC+TGG 0.511941 4.2:+15046889 None:intergenic
CTGCTGCTGATTTGGAGGAG+GGG 0.512495 4.2:+15046657 None:intergenic
ACTGGTGGACGCGAGATTTG+CGG 0.512954 4.2:+15046994 None:intergenic
GGACGAGGTGGACCAAAGAC+AGG 0.514937 4.2:+15046688 None:intergenic
GGTCCTGTTCGTGGTGTTGG+TGG 0.516931 4.2:-15047039 MS.gene08263:CDS
CCTGGTCTCGGAGGACCACC+TGG 0.517685 4.2:+15046907 None:intergenic
CAATTTGCTCCTCCGAGACC+TGG 0.521655 4.2:-15046871 MS.gene08263:CDS
CGAGATTCTTCAGGAGGAGG+AGG 0.523409 4.2:+15047171 None:intergenic
CCGGGATATGGCATCTGACC+AGG 0.523672 4.2:+15046934 None:intergenic
CAACCTCTTCGCCGCGGAGG+AGG 0.523754 4.2:+15047214 None:intergenic
GGTCCTCTCATCATCTGTCC+AGG 0.524181 4.2:+15046778 None:intergenic
CCAGGTGGTCCTCCGAGACC+AGG 0.525026 4.2:-15046907 MS.gene08263:CDS
GGCCCCTGCATTCCAGGATG+AGG 0.526052 4.2:+15046751 None:intergenic
TGCATTCCAGGATGAGGAGG+AGG 0.529746 4.2:+15046757 None:intergenic
GGAGGAGGCATTCCGGGACG+AGG 0.529786 4.2:+15046727 None:intergenic
GTCTCTGTCCAAACTGAGGA+GGG 0.534002 4.2:+15046818 None:intergenic
CAGTTTGGACAGAGACCTAT+GGG 0.538307 4.2:-15046811 MS.gene08263:CDS
ATTGGTCGTGCTGCTGGGAG+AGG 0.539889 4.2:-15047108 MS.gene08263:CDS
GGCTGCATCATACCAGGAGC+AGG 0.540362 4.2:+15047015 None:intergenic
GTCTTTGGTCCACCTCGTCC+CGG 0.542041 4.2:-15046685 MS.gene08263:CDS
TATGGCATCTGACCAGGCGG+TGG 0.542831 4.2:+15046940 None:intergenic
TCTCCTCCTCCGCGGCGAAG+AGG 0.543618 4.2:-15047217 MS.gene08263:CDS
GAGATTCATGTGGCGGTCGA+AGG 0.548205 4.2:+15047335 None:intergenic
CGCATCACTGGAGGACCACC+AGG 0.549753 4.2:+15046964 None:intergenic
AGGAGGACCTTCAACAGTCA+TGG 0.558071 4.2:+15047188 None:intergenic
ACAGTTATTCAAGCTCAGCC+TGG 0.558727 4.2:-15047069 MS.gene08263:CDS
TCATCTGTCCAGGAGGAGGT+GGG 0.563438 4.2:+15046788 None:intergenic
GTCTTCACGGTCACCGTCGG+TGG 0.565080 4.2:+15047257 None:intergenic
CCCTGCATTCCAGGATGAGG+AGG 0.566700 4.2:+15046754 None:intergenic
AAGACAGGAACACCACTACC+AGG 0.567248 4.2:+15046703 None:intergenic
CGAACAGGACCAGCAAGACC+AGG 0.568021 4.2:+15047051 None:intergenic
CCTGGTCAGATGCCATATCC+CGG 0.573529 4.2:-15046934 MS.gene08263:CDS
TGGGAGAGGTATTCCTCCTC+CGG 0.576694 4.2:-15047094 MS.gene08263:CDS
GCGGTCTTCACGGTCACCGT+CGG 0.576706 4.2:+15047254 None:intergenic
ATTTGCGGCTGCATCATACC+AGG 0.577839 4.2:+15047009 None:intergenic
AGAGTTTCGCAAACTTCCAC+CGG 0.582618 4.2:-15047295 MS.gene08263:CDS
ACACCACTACCAGGAGGAGG+AGG 0.583299 4.2:+15046712 None:intergenic
TTGGAGCGAGATTCTTCAGG+AGG 0.585958 4.2:+15047165 None:intergenic
GGAGGAGAAGGCCGAGTGTG+CGG 0.586029 4.2:+15047232 None:intergenic
TGAGCTTGAATAACTGTCGC+CGG 0.590066 4.2:+15047075 None:intergenic
GGCGGTGGACGCATCACTGG+AGG 0.605634 4.2:+15046955 None:intergenic
CTCCTCATCCTGGAATGCAG+GGG 0.609249 4.2:-15046753 MS.gene08263:CDS
GGAGGCATTCCGGGACGAGG+CGG 0.610066 4.2:+15046730 None:intergenic
GGTCTCTGTCCAAACTGAGG+AGG 0.612028 4.2:+15046817 None:intergenic
GGAACACCACTACCAGGAGG+AGG 0.616003 4.2:+15046709 None:intergenic
CAAGACGGTCGTCAACTCGT+CGG 0.618826 4.2:-15047369 MS.gene08263:CDS
TCTCTGTCCAAACTGAGGAG+GGG 0.621232 4.2:+15046819 None:intergenic
TTTGCTCCTCCGAGACCTGG+TGG 0.625587 4.2:-15046868 MS.gene08263:CDS
CTCGGAGGAGCAAATTGCGG+TGG 0.627944 4.2:+15046877 None:intergenic
CCTCCTGGACAGATGATGAG+AGG 0.637519 4.2:-15046781 MS.gene08263:CDS
AAACAACCTCTTCGCCGCGG+AGG 0.648728 4.2:+15047211 None:intergenic
GGAGAAGGCCGAGTGTGCGG+CGG 0.649221 4.2:+15047235 None:intergenic
CGAGAACGAGATTCATGTGG+CGG 0.654892 4.2:+15047328 None:intergenic
GGTCTCGGAGGAGCAAATTG+CGG 0.656856 4.2:+15046874 None:intergenic
GGTGGTCCTCCGAGACCAGG+TGG 0.664434 4.2:-15046904 MS.gene08263:CDS
CCTCTCATCATCTGTCCAGG+AGG 0.666388 4.2:+15046781 None:intergenic
GGCGGACCACCTGGTCTCGG+AGG 0.672885 4.2:+15046898 None:intergenic
CCATATCCCGGTATGCCAGG+TGG 0.677559 4.2:-15046922 MS.gene08263:CDS
ATAGGTCTCTGTCCAAACTG+AGG 0.679573 4.2:+15046814 None:intergenic
CGCCGAGAACGAGATTCATG+TGG 0.682544 4.2:+15047325 None:intergenic
GCTTGAATAACTGTCGCCGG+AGG 0.688958 4.2:+15047078 None:intergenic
GGAGGACCACCAGGTCTCGG+AGG 0.690122 4.2:+15046862 None:intergenic
CCACCAGGATACGAAACTGG+TGG 0.691786 4.2:+15046979 None:intergenic
CCACCAGTTTCGTATCCTGG+TGG 0.698080 4.2:-15046979 MS.gene08263:CDS
GGATATGGCATCTGACCAGG+CGG 0.715982 4.2:+15046937 None:intergenic
CTCGGCCTTCTCCTCCTCCG+CGG 0.716164 4.2:-15047225 MS.gene08263:CDS
AAAGGTAAGAAAACCACCGA+CGG 0.721265 4.2:-15047270 MS.gene08263:CDS
ATGCGCGTAACAATTCAAGA+CGG 0.746228 4.2:-15047384 MS.gene08263:CDS
TGGAAACAACCTCTTCGCCG+CGG 0.747245 4.2:+15047208 None:intergenic
ACAGGAACACCACTACCAGG+AGG 0.753038 4.2:+15046706 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTATGTATTGAAGCATTT+TGG + chr4.2:15046664-15046683 None:intergenic 25.0%
! GTGGTTTTCTTACCTTTTAC+CGG + chr4.2:15046801-15046820 None:intergenic 35.0%
AAAGGTAAGAAAACCACCGA+CGG - chr4.2:15046804-15046823 MS.gene08263:CDS 40.0%
ATGCGCGTAACAATTCAAGA+CGG - chr4.2:15046690-15046709 MS.gene08263:CDS 40.0%
CTTGAATTGTTACGCGCATA+CGG + chr4.2:15046689-15046708 None:intergenic 40.0%
! GTTGTTTCCATGACTGTTGA+AGG - chr4.2:15046879-15046898 MS.gene08263:CDS 40.0%
! GTTTTCTTACCTTTTACCGG+TGG + chr4.2:15046798-15046817 None:intergenic 40.0%
ACAGTTATTCAAGCTCAGCC+TGG - chr4.2:15047005-15047024 MS.gene08263:CDS 45.0%
AGAGTTTCGCAAACTTCCAC+CGG - chr4.2:15046779-15046798 MS.gene08263:CDS 45.0%
AGCAGCAGCATTAACAGCTT+TGG + chr4.2:15046931-15046950 None:intergenic 45.0%
AGCTGTTAATGCTGCTGCTA+TGG - chr4.2:15046932-15046951 MS.gene08263:CDS 45.0%
ATAGGTCTCTGTCCAAACTG+AGG + chr4.2:15047263-15047282 None:intergenic 45.0%
CAGTTTGGACAGAGACCTAT+GGG - chr4.2:15047263-15047282 MS.gene08263:CDS 45.0%
TCAACTCGTCGGAAAGTTCA+TGG - chr4.2:15046716-15046735 MS.gene08263:CDS 45.0%
TCAGTTTGGACAGAGACCTA+TGG - chr4.2:15047262-15047281 MS.gene08263:CDS 45.0%
TGAGCTTGAATAACTGTCGC+CGG + chr4.2:15047002-15047021 None:intergenic 45.0%
AAGACAGGAACACCACTACC+AGG + chr4.2:15047374-15047393 None:intergenic 50.0%
AGGAGGACCTTCAACAGTCA+TGG + chr4.2:15046889-15046908 None:intergenic 50.0%
ATTTGCGGCTGCATCATACC+AGG + chr4.2:15047068-15047087 None:intergenic 50.0%
CGAGAACGAGATTCATGTGG+CGG + chr4.2:15046749-15046768 None:intergenic 50.0%
CGCAAACTTCCACCGGTAAA+AGG - chr4.2:15046786-15046805 MS.gene08263:CDS 50.0%
CGCCACATGAATCTCGTTCT+CGG - chr4.2:15046747-15046766 MS.gene08263:CDS 50.0%
GTCTCTGTCCAAACTGAGGA+GGG + chr4.2:15047259-15047278 None:intergenic 50.0%
GTTAATGCTGCTGCTATGGC+AGG - chr4.2:15046936-15046955 MS.gene08263:CDS 50.0%
TCTCTGTCCAAACTGAGGAG+GGG + chr4.2:15047258-15047277 None:intergenic 50.0%
TTGGAGCGAGATTCTTCAGG+AGG + chr4.2:15046912-15046931 None:intergenic 50.0%
! GGTAGTGGTGTTCCTGTCTT+TGG - chr4.2:15047374-15047393 MS.gene08263:CDS 50.0%
! TGTTGCTGCTGCTGCTGATT+TGG + chr4.2:15047428-15047447 None:intergenic 50.0%
!! GCTTTGGAGCGAGATTCTTC+AGG + chr4.2:15046915-15046934 None:intergenic 50.0%
ACAGGAACACCACTACCAGG+AGG + chr4.2:15047371-15047390 None:intergenic 55.0%
ATACCAAATTGCGGCGGAGG+AGG + chr4.2:15047233-15047252 None:intergenic 55.0%
ATCATCTGTCCAGGAGGAGG+TGG + chr4.2:15047290-15047309 None:intergenic 55.0%
ATGCCATATCCCGGTATGCC+AGG - chr4.2:15047149-15047168 MS.gene08263:CDS 55.0%
CAAGACGGTCGTCAACTCGT+CGG - chr4.2:15046705-15046724 MS.gene08263:CDS 55.0%
CCACCAGGATACGAAACTGG+TGG + chr4.2:15047098-15047117 None:intergenic 55.0%
CCACCAGTTTCGTATCCTGG+TGG - chr4.2:15047095-15047114 MS.gene08263:CDS 55.0%
CCTCCTCATCCTGGAATGCA+GGG - chr4.2:15047320-15047339 MS.gene08263:CDS 55.0%
CCTCCTGGACAGATGATGAG+AGG - chr4.2:15047293-15047312 MS.gene08263:CDS 55.0%
CCTCTCATCATCTGTCCAGG+AGG + chr4.2:15047296-15047315 None:intergenic 55.0%
CCTGGTCAGATGCCATATCC+CGG - chr4.2:15047140-15047159 MS.gene08263:CDS 55.0%
CGAGATTCTTCAGGAGGAGG+AGG + chr4.2:15046906-15046925 None:intergenic 55.0%
CGCCGAGAACGAGATTCATG+TGG + chr4.2:15046752-15046771 None:intergenic 55.0%
CGTCCACCAGTTTCGTATCC+TGG - chr4.2:15047092-15047111 MS.gene08263:CDS 55.0%
CTCATCATCTGTCCAGGAGG+AGG + chr4.2:15047293-15047312 None:intergenic 55.0%
CTCCTCATCCTGGAATGCAG+GGG - chr4.2:15047321-15047340 MS.gene08263:CDS 55.0%
CTCTGTCCAAACTGAGGAGG+GGG + chr4.2:15047257-15047276 None:intergenic 55.0%
GAGATTCATGTGGCGGTCGA+AGG + chr4.2:15046742-15046761 None:intergenic 55.0%
GAGCGAGATTCTTCAGGAGG+AGG + chr4.2:15046909-15046928 None:intergenic 55.0%
GCTATGGCAGGTCCTGGAAT+TGG - chr4.2:15046948-15046967 MS.gene08263:CDS 55.0%
GCTTGAATAACTGTCGCCGG+AGG + chr4.2:15046999-15047018 None:intergenic 55.0%
GGACCACCAGGATACGAAAC+TGG + chr4.2:15047101-15047120 None:intergenic 55.0%
GGATATGGCATCTGACCAGG+CGG + chr4.2:15047140-15047159 None:intergenic 55.0%
GGTCCTCTCATCATCTGTCC+AGG + chr4.2:15047299-15047318 None:intergenic 55.0%
GGTCTCGGAGGAGCAAATTG+CGG + chr4.2:15047203-15047222 None:intergenic 55.0%
GGTCTCTGTCCAAACTGAGG+AGG + chr4.2:15047260-15047279 None:intergenic 55.0%
TCATCTGTCCAGGAGGAGGT+GGG + chr4.2:15047289-15047308 None:intergenic 55.0%
TCCTCCTCATCCTGGAATGC+AGG - chr4.2:15047319-15047338 MS.gene08263:CDS 55.0%
TGAATAACTGTCGCCGGAGG+AGG + chr4.2:15046996-15047015 None:intergenic 55.0%
TGCATTCCAGGATGAGGAGG+AGG + chr4.2:15047320-15047339 None:intergenic 55.0%
TGGAAACAACCTCTTCGCCG+CGG + chr4.2:15046869-15046888 None:intergenic 55.0%
! ACTGGTGGACGCGAGATTTG+CGG + chr4.2:15047083-15047102 None:intergenic 55.0%
! CAATTTGCTCCTCCGAGACC+TGG - chr4.2:15047203-15047222 MS.gene08263:CDS 55.0%
! CTGGAATTGGTCGTGCTGCT+GGG - chr4.2:15046961-15046980 MS.gene08263:CDS 55.0%
! GGAGGGGGCATACCAAATTG+CGG + chr4.2:15047242-15047261 None:intergenic 55.0%
!! CTGCTGCTGATTTGGAGGAG+GGG + chr4.2:15047420-15047439 None:intergenic 55.0%
!! GCTGCTGCTGATTTGGAGGA+GGG + chr4.2:15047421-15047440 None:intergenic 55.0%
!! TGCTGCTGATTTGGAGGAGG+GGG + chr4.2:15047419-15047438 None:intergenic 55.0%
!! TGCTGCTGCTGATTTGGAGG+AGG + chr4.2:15047422-15047441 None:intergenic 55.0%
!! TGCTGCTGCTGCTGATTTGG+AGG + chr4.2:15047425-15047444 None:intergenic 55.0%
!! TGGGAGAGGTATTCCTCCTC+CGG - chr4.2:15046980-15046999 MS.gene08263:CDS 55.0%
AAACAACCTCTTCGCCGCGG+AGG + chr4.2:15046866-15046885 None:intergenic 60.0%
ACACCACTACCAGGAGGAGG+AGG + chr4.2:15047365-15047384 None:intergenic 60.0%
AGAGGACCTCCTCCTCATCC+TGG - chr4.2:15047311-15047330 MS.gene08263:CDS 60.0%
ATGCCTCCTCCTCCTGGTAG+TGG - chr4.2:15047359-15047378 MS.gene08263:CDS 60.0%
CCACCTGGCATACCGGGATA+TGG + chr4.2:15047155-15047174 None:intergenic 60.0%
CCAGCAGCACGACCAATTCC+AGG + chr4.2:15046963-15046982 None:intergenic 60.0%
CCATATCCCGGTATGCCAGG+TGG - chr4.2:15047152-15047171 MS.gene08263:CDS 60.0%
CCCTGCATTCCAGGATGAGG+AGG + chr4.2:15047323-15047342 None:intergenic 60.0%
CCGGGATATGGCATCTGACC+AGG + chr4.2:15047143-15047162 None:intergenic 60.0%
CCTGGAATTGGTCGTGCTGC+TGG - chr4.2:15046960-15046979 MS.gene08263:CDS 60.0%
CGAACAGGACCAGCAAGACC+AGG + chr4.2:15047026-15047045 None:intergenic 60.0%
CTCGGAGGAGCAAATTGCGG+TGG + chr4.2:15047200-15047219 None:intergenic 60.0%
GCTGGTCCTGTTCGTGGTGT+TGG - chr4.2:15047032-15047051 MS.gene08263:CDS 60.0%
GGAACACCACTACCAGGAGG+AGG + chr4.2:15047368-15047387 None:intergenic 60.0%
GGACGAGGTGGACCAAAGAC+AGG + chr4.2:15047389-15047408 None:intergenic 60.0%
GGAGGAGCAAATTGCGGTGG+CGG + chr4.2:15047197-15047216 None:intergenic 60.0%
GGCATACCAAATTGCGGCGG+AGG + chr4.2:15047236-15047255 None:intergenic 60.0%
GGCTGCATCATACCAGGAGC+AGG + chr4.2:15047062-15047081 None:intergenic 60.0%
GGTATGCCCCCTCCTCAGTT+TGG - chr4.2:15047248-15047267 MS.gene08263:CDS 60.0%
GGTCCACCAACACCACGAAC+AGG + chr4.2:15047041-15047060 None:intergenic 60.0%
GGTCTTGCTGGTCCTGTTCG+TGG - chr4.2:15047026-15047045 MS.gene08263:CDS 60.0%
GTCTTTGGTCCACCTCGTCC+CGG - chr4.2:15047389-15047408 MS.gene08263:CDS 60.0%
TATGGCATCTGACCAGGCGG+TGG + chr4.2:15047137-15047156 None:intergenic 60.0%
TTTGCTCCTCCGAGACCTGG+TGG - chr4.2:15047206-15047225 MS.gene08263:CDS 60.0%
! ATTGGTCGTGCTGCTGGGAG+AGG - chr4.2:15046966-15046985 MS.gene08263:CDS 60.0%
! ATTTGGAGGAGGGGGCATGC+CGG + chr4.2:15047411-15047430 None:intergenic 60.0%
! GGGGGCATACCAAATTGCGG+CGG + chr4.2:15047239-15047258 None:intergenic 60.0%
! GGTCCTGTTCGTGGTGTTGG+TGG - chr4.2:15047035-15047054 MS.gene08263:CDS 60.0%
!! ACCAGGAGGAGGAGGCATTC+CGG + chr4.2:15047357-15047376 None:intergenic 60.0%
!! CAAGCTCAGCCTGGTCTTGC+TGG - chr4.2:15047014-15047033 MS.gene08263:CDS 60.0%
CGAGTGTGCGGCGGTCTTCA+CGG + chr4.2:15046833-15046852 None:intergenic 65.0%
CGCATCACTGGAGGACCACC+AGG + chr4.2:15047113-15047132 None:intergenic 65.0%
CGGAGGACCACCTGGCATAC+CGG + chr4.2:15047162-15047181 None:intergenic 65.0%
CGTGAAGACCGCCGCACACT+CGG - chr4.2:15046831-15046850 MS.gene08263:CDS 65.0%
GCGGTCTTCACGGTCACCGT+CGG + chr4.2:15046823-15046842 None:intergenic 65.0%
GCTGCTGCTATGGCAGGTCC+TGG - chr4.2:15046942-15046961 MS.gene08263:CDS 65.0%
GGAGGACCACCTGGCATACC+GGG + chr4.2:15047161-15047180 None:intergenic 65.0%
GGAGGAGAAGGCCGAGTGTG+CGG + chr4.2:15046845-15046864 None:intergenic 65.0%
GGAGGAGGACCACCAGGTCT+CGG + chr4.2:15047218-15047237 None:intergenic 65.0%
GGCCCCTGCATTCCAGGATG+AGG + chr4.2:15047326-15047345 None:intergenic 65.0%
GGTCCTCCTCCGCCGCAATT+TGG - chr4.2:15047227-15047246 MS.gene08263:CDS 65.0%
GTCTTCACGGTCACCGTCGG+TGG + chr4.2:15046820-15046839 None:intergenic 65.0%
! TTTGGAGGAGGGGGCATGCC+GGG + chr4.2:15047410-15047429 None:intergenic 65.0%
!! AATTGCGGTGGCGGACCACC+TGG + chr4.2:15047188-15047207 None:intergenic 65.0%
!! CCAGGAGGAGGAGGCATTCC+GGG + chr4.2:15047356-15047375 None:intergenic 65.0%
!! GGTGTTGGTGGACCTGCTCC+TGG - chr4.2:15047047-15047066 MS.gene08263:CDS 65.0%
CAACCTCTTCGCCGCGGAGG+AGG + chr4.2:15046863-15046882 None:intergenic 70.0%
CCAGGAGGAGGTGGGCCCAT+AGG + chr4.2:15047281-15047300 None:intergenic 70.0%
CCAGGCGGTGGACGCATCAC+TGG + chr4.2:15047125-15047144 None:intergenic 70.0%
CCAGGTGGTCCTCCGAGACC+AGG - chr4.2:15047167-15047186 MS.gene08263:CDS 70.0%
CCAGTGATGCGTCCACCGCC+TGG - chr4.2:15047122-15047141 MS.gene08263:CDS 70.0%
CCCGGAATGCCTCCTCCTCC+TGG - chr4.2:15047353-15047372 MS.gene08263:CDS 70.0%
CCTATGGGCCCACCTCCTCC+TGG - chr4.2:15047278-15047297 MS.gene08263:CDS 70.0%
CCTGGTCTCGGAGGACCACC+TGG + chr4.2:15047170-15047189 None:intergenic 70.0%
CTCGGCCTTCTCCTCCTCCG+CGG - chr4.2:15046849-15046868 MS.gene08263:CDS 70.0%
CTTCGCCGCGGAGGAGGAGA+AGG + chr4.2:15046857-15046876 None:intergenic 70.0%
GGAGAAGGCCGAGTGTGCGG+CGG + chr4.2:15046842-15046861 None:intergenic 70.0%
GGAGGACCACCAGGTCTCGG+AGG + chr4.2:15047215-15047234 None:intergenic 70.0%
GGCGGTGGACGCATCACTGG+AGG + chr4.2:15047122-15047141 None:intergenic 70.0%
GGTGGTCCTCCGAGACCAGG+TGG - chr4.2:15047170-15047189 MS.gene08263:CDS 70.0%
TCTCCTCCTCCGCGGCGAAG+AGG - chr4.2:15046857-15046876 MS.gene08263:CDS 70.0%
!! GGAGGAGGCATTCCGGGACG+AGG + chr4.2:15047350-15047369 None:intergenic 70.0%
!! GGAGGCATTCCGGGACGAGG+CGG + chr4.2:15047347-15047366 None:intergenic 70.0%
!! GGTGGCGGACCACCTGGTCT+CGG + chr4.2:15047182-15047201 None:intergenic 70.0%
ATGCAGGGGCCGCCTCGTCC+CGG - chr4.2:15047335-15047354 MS.gene08263:CDS 75.0%
CGAGGCGGCCCCTGCATTCC+AGG + chr4.2:15047332-15047351 None:intergenic 75.0%
GGCGGACCACCTGGTCTCGG+AGG + chr4.2:15047179-15047198 None:intergenic 75.0%
TGCGGCGGAGGAGGACCACC+AGG + chr4.2:15047224-15047243 None:intergenic 75.0%
!! GGAGGGGGCATGCCGGGACG+AGG + chr4.2:15047404-15047423 None:intergenic 80.0%
!! GGGGGCATGCCGGGACGAGG+TGG + chr4.2:15047401-15047420 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 15046642 15047454 15046642 ID=MS.gene08263
chr4.2 mRNA 15046642 15047454 15046642 ID=MS.gene08263.t1;Parent=MS.gene08263
chr4.2 exon 15046642 15047454 15046642 ID=MS.gene08263.t1.exon1;Parent=MS.gene08263.t1
chr4.2 CDS 15046642 15047454 15046642 ID=cds.MS.gene08263.t1;Parent=MS.gene08263.t1
Gene Sequence

>MS.gene08263

ATGTCGATGTCAAAGAGTTCCAAAATGCTTCAATACATAAACTACCGTATGCGCGTAACAATTCAAGACGGTCGTCAACTCGTCGGAAAGTTCATGGCCTTCGACCGCCACATGAATCTCGTTCTCGGCGACTGCGAAGAGTTTCGCAAACTTCCACCGGTAAAAGGTAAGAAAACCACCGACGGTGACCGTGAAGACCGCCGCACACTCGGCCTTCTCCTCCTCCGCGGCGAAGAGGTTGTTTCCATGACTGTTGAAGGTCCTCCTCCTCCTGAAGAATCTCGCTCCAAAGCTGTTAATGCTGCTGCTATGGCAGGTCCTGGAATTGGTCGTGCTGCTGGGAGAGGTATTCCTCCTCCGGCGACAGTTATTCAAGCTCAGCCTGGTCTTGCTGGTCCTGTTCGTGGTGTTGGTGGACCTGCTCCTGGTATGATGCAGCCGCAAATCTCGCGTCCACCAGTTTCGTATCCTGGTGGTCCTCCAGTGATGCGTCCACCGCCTGGTCAGATGCCATATCCCGGTATGCCAGGTGGTCCTCCGAGACCAGGTGGTCCGCCACCGCAATTTGCTCCTCCGAGACCTGGTGGTCCTCCTCCGCCGCAATTTGGTATGCCCCCTCCTCAGTTTGGACAGAGACCTATGGGCCCACCTCCTCCTGGACAGATGATGAGAGGACCTCCTCCTCATCCTGGAATGCAGGGGCCGCCTCGTCCCGGAATGCCTCCTCCTCCTGGTAGTGGTGTTCCTGTCTTTGGTCCACCTCGTCCCGGCATGCCCCCTCCTCCAAATCAGCAGCAGCAGCAACAACAGTGA
Protein sequence

>MS.gene08263.t1

MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPVKGKKTTDGDREDRRTLGLLLLRGEEVVSMTVEGPPPPEESRSKAVNAAAMAGPGIGRAAGRGIPPPATVIQAQPGLAGPVRGVGGPAPGMMQPQISRPPVSYPGGPPVMRPPPGQMPYPGMPGGPPRPGGPPPQFAPPRPGGPPPPQFGMPPPQFGQRPMGPPPPGQMMRGPPPHPGMQGPPRPGMPPPPGSGVPVFGPPRPGMPPPPNQQQQQQQ