Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08339.t1 | ACJ84591.1 | 97.7 | 213 | 5 | 0 | 1 | 213 | 1 | 213 | 1.60E-113 | 418.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08339.t1 | Q67ZF6 | 62.9 | 205 | 73 | 3 | 6 | 208 | 17 | 220 | 1.8e-65 | 250.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08339.t1 | B7FIL2 | 97.7 | 213 | 5 | 0 | 1 | 213 | 1 | 213 | 1.2e-113 | 418.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054118 | MS.gene08339 | 0.819258 | 1.28E-52 | -1.69E-46 |
| MS.gene058909 | MS.gene08339 | 0.818309 | 2.10E-52 | -1.69E-46 |
| MS.gene058912 | MS.gene08339 | 0.820154 | 7.97E-53 | -1.69E-46 |
| MS.gene060825 | MS.gene08339 | 0.814905 | 1.21E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78729 | MS.gene08339 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08339.t1 | MTR_1g033390 | 59.048 | 210 | 84 | 2 | 1 | 208 | 1 | 210 | 1.04e-84 | 250 |
| MS.gene08339.t1 | MTR_1g033360 | 43.750 | 208 | 114 | 3 | 1 | 206 | 7 | 213 | 8.70e-57 | 179 |
| MS.gene08339.t1 | MTR_1g100643 | 39.604 | 202 | 117 | 2 | 9 | 205 | 13 | 214 | 9.46e-53 | 169 |
| MS.gene08339.t1 | MTR_6g017105 | 36.869 | 198 | 119 | 3 | 11 | 202 | 16 | 213 | 7.44e-40 | 136 |
| MS.gene08339.t1 | MTR_1g100643 | 37.267 | 161 | 96 | 2 | 50 | 205 | 1 | 161 | 9.96e-36 | 124 |
| MS.gene08339.t1 | MTR_5g053250 | 35.079 | 191 | 111 | 6 | 10 | 189 | 17 | 205 | 1.02e-26 | 102 |
| MS.gene08339.t1 | MTR_5g053250 | 38.356 | 146 | 83 | 4 | 50 | 189 | 1 | 145 | 1.22e-23 | 93.2 |
| MS.gene08339.t1 | MTR_5g053250 | 30.734 | 218 | 111 | 7 | 10 | 189 | 17 | 232 | 6.13e-21 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08339.t1 | AT1G14730 | 62.319 | 207 | 75 | 3 | 6 | 210 | 17 | 222 | 5.96e-87 | 256 |
| MS.gene08339.t1 | AT4G25570 | 39.048 | 210 | 123 | 3 | 1 | 205 | 5 | 214 | 6.61e-50 | 162 |
| MS.gene08339.t1 | AT4G25570 | 39.048 | 210 | 123 | 3 | 1 | 205 | 46 | 255 | 8.04e-49 | 161 |
| MS.gene08339.t1 | AT5G38630 | 37.073 | 205 | 123 | 3 | 8 | 206 | 13 | 217 | 2.81e-43 | 145 |
| MS.gene08339.t1 | AT1G26100 | 34.104 | 173 | 102 | 5 | 8 | 177 | 13 | 176 | 6.45e-24 | 95.5 |
Find 50 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTATAGTACCTCAATTT+TGG | 0.192371 | 4.1:-16881804 | MS.gene08339:CDS |
| CATTTCATTGCCATAGTTCT+TGG | 0.208807 | 4.1:-16880754 | MS.gene08339:CDS |
| CCCTCATCCTTATGCTTGTT+TGG | 0.262566 | 4.1:-16881760 | MS.gene08339:CDS |
| GGTCTAGCAATTCTCTTGTT+TGG | 0.264168 | 4.1:-16880119 | MS.gene08339:CDS |
| ATTCACTTCAAGAAACAATA+TGG | 0.266766 | 4.1:+16880066 | None:intergenic |
| ATGTTTACAGCCTCCATTCA+TGG | 0.312973 | 4.1:-16880678 | MS.gene08339:CDS |
| GCAATTTGTGCTGCACTAAC+AGG | 0.327192 | 4.1:-16880212 | MS.gene08339:CDS |
| GCCATAGTTCTTGGAATTGT+TGG | 0.333746 | 4.1:-16880745 | MS.gene08339:CDS |
| CTCCATTCATGGATTGGCCT+TGG | 0.364175 | 4.1:-16880667 | MS.gene08339:CDS |
| TGATGAGATGGGATTCTCTT+TGG | 0.375896 | 4.1:+16880150 | None:intergenic |
| TGCTGCACTAACAGGTTTGA+TGG | 0.381294 | 4.1:-16880204 | MS.gene08339:CDS |
| ACCAACAATTCCAAGAACTA+TGG | 0.394185 | 4.1:+16880744 | None:intergenic |
| TACAGCCTCCATTCATGGAT+TGG | 0.402679 | 4.1:-16880673 | MS.gene08339:CDS |
| TTCTGTGTTTCATGTGTGCC+TGG | 0.408328 | 4.1:+16880796 | None:intergenic |
| TGTGGATATGACAGTTGGTT+TGG | 0.414085 | 4.1:-16880090 | MS.gene08339:CDS |
| AACCCAAAGAACATCAGAAA+AGG | 0.444479 | 4.1:+16881579 | None:intergenic |
| GACCAGTAAAATTGATGAGA+TGG | 0.463258 | 4.1:+16880138 | None:intergenic |
| GGACTGACATTCATGTTTCA+AGG | 0.471960 | 4.1:-16880302 | MS.gene08339:CDS |
| TTCACTTCAAGAAACAATAT+GGG | 0.499824 | 4.1:+16880067 | None:intergenic |
| CTGCAAGCCAAACAAGCAAA+AGG | 0.518582 | 4.1:+16880642 | None:intergenic |
| GCAGCAACCAAACAAGCATA+AGG | 0.521345 | 4.1:+16881753 | None:intergenic |
| CAACCAAGTTCACCATATCA+TGG | 0.523417 | 4.1:+16880701 | None:intergenic |
| AAGACAATCAAGGGCTGCAA+TGG | 0.527559 | 4.1:-16880276 | MS.gene08339:CDS |
| ATGTCTTACCACACAGTACC+AGG | 0.530006 | 4.1:-16880814 | MS.gene08339:CDS |
| CATATCATGGAACTTGAAAA+CGG | 0.532163 | 4.1:+16880714 | None:intergenic |
| CACTAACAGGTTTGATGGAG+AGG | 0.533891 | 4.1:-16880199 | MS.gene08339:CDS |
| ACCAGTAAAATTGATGAGAT+GGG | 0.537855 | 4.1:+16880139 | None:intergenic |
| TGCCAAGGCCAATCCATGAA+TGG | 0.541924 | 4.1:+16880665 | None:intergenic |
| ATGGCTCCATGGCACATAGC+TGG | 0.542007 | 4.1:-16880257 | MS.gene08339:CDS |
| GTTCCATGATATGGTGAACT+TGG | 0.544949 | 4.1:-16880704 | MS.gene08339:CDS |
| ACCAAACAAGCATAAGGATG+AGG | 0.552123 | 4.1:+16881759 | None:intergenic |
| CAAGGGCTGCAATGGCTCCA+TGG | 0.553808 | 4.1:-16880268 | MS.gene08339:CDS |
| TTCAAGGAAGAAGACAATCA+AGG | 0.557731 | 4.1:-16880286 | MS.gene08339:CDS |
| ACCCAAAGAACATCAGAAAA+GGG | 0.558431 | 4.1:+16881580 | None:intergenic |
| CAAACAAGCAAAAGGTGCCA+AGG | 0.564883 | 4.1:+16880650 | None:intergenic |
| TCAAGGAAGAAGACAATCAA+GGG | 0.567109 | 4.1:-16880285 | MS.gene08339:CDS |
| CTACCACCAGCTATGTGCCA+TGG | 0.572574 | 4.1:+16880251 | None:intergenic |
| GAGGGGATTGAATATGACTC+TGG | 0.574307 | 4.1:-16881722 | MS.gene08339:CDS |
| TGGTTGCTGCATTACCGTGA+GGG | 0.574869 | 4.1:-16881740 | MS.gene08339:CDS |
| GGTTGCTGCATTACCGTGAG+GGG | 0.582408 | 4.1:-16881739 | MS.gene08339:CDS |
| CATACATTGAAAACACGAAG+TGG | 0.594783 | 4.1:+16881695 | None:intergenic |
| AGATGGGATTCTCTTTGGTG+TGG | 0.600431 | 4.1:+16880155 | None:intergenic |
| AAACAAGTGAGCCAAAATTG+AGG | 0.600449 | 4.1:+16881793 | None:intergenic |
| CCAAACAAGCATAAGGATGA+GGG | 0.611153 | 4.1:+16881760 | None:intergenic |
| CAAGGCCAATCCATGAATGG+AGG | 0.654155 | 4.1:+16880668 | None:intergenic |
| AGTCATATTCAATCCCCTCA+CGG | 0.654951 | 4.1:+16881726 | None:intergenic |
| AATATATACCTTGACCAACA+AGG | 0.656313 | 4.1:+16881550 | None:intergenic |
| GCTCCATGGCACATAGCTGG+TGG | 0.673506 | 4.1:-16880254 | MS.gene08339:CDS |
| TTGGTTGCTGCATTACCGTG+AGG | 0.689331 | 4.1:-16881741 | MS.gene08339:CDS |
| CATGTGTGCCTGGTACTGTG+TGG | 0.717385 | 4.1:+16880806 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTAGCTTTAAAATATA+AGG | + | chr4.1:16880738-16880757 | None:intergenic | 10.0% |
| !! | AAGAAACAAAGTAAAAATTA+GGG | - | chr4.1:16880916-16880935 | MS.gene08339:intron | 15.0% |
| !! | TAAATTCAAATGTTATTGTA+GGG | + | chr4.1:16881278-16881297 | None:intergenic | 15.0% |
| !! | TAAGAAACAAAGTAAAAATT+AGG | - | chr4.1:16880915-16880934 | MS.gene08339:intron | 15.0% |
| !! | TTAAATTCAAATGTTATTGT+AGG | + | chr4.1:16881279-16881298 | None:intergenic | 15.0% |
| !! | TTACAGTTAAAAATAAAAAC+TGG | - | chr4.1:16880945-16880964 | MS.gene08339:intron | 15.0% |
| !!! | AATTTTTTATACTTTACAAC+TGG | - | chr4.1:16880235-16880254 | MS.gene08339:CDS | 15.0% |
| !!! | TTTATTTCAAGTTTTAAGAT+AGG | - | chr4.1:16880356-16880375 | MS.gene08339:intron | 15.0% |
| !! | TAAGAAATATGCAAATTCTA+TGG | + | chr4.1:16880705-16880724 | None:intergenic | 20.0% |
| !! | TATTTCAGTTTACTAGTATT+AGG | + | chr4.1:16880986-16881005 | None:intergenic | 20.0% |
| !!! | AATATAAACTATTTTTGCAG+TGG | - | chr4.1:16881551-16881570 | MS.gene08339:intron | 20.0% |
| ! | AATTACTTGACTGATTGAAT+TGG | - | chr4.1:16881021-16881040 | MS.gene08339:intron | 25.0% |
| ! | TAAATTTAATAGAATGTCGC+AGG | + | chr4.1:16881510-16881529 | None:intergenic | 25.0% |
| ! | TTGAATTTAACCAAAAAGCA+TGG | - | chr4.1:16881289-16881308 | MS.gene08339:intron | 25.0% |
| !! | TTCTTATAGTACCTCAATTT+TGG | - | chr4.1:16880078-16880097 | MS.gene08339:CDS | 25.0% |
| !!! | ATTTCAAGTTTTAAGATAGG+TGG | - | chr4.1:16880359-16880378 | MS.gene08339:intron | 25.0% |
| !!! | TGTAAACTTCTACTTTTCAA+AGG | + | chr4.1:16880430-16880449 | None:intergenic | 25.0% |
| !!! | TTCAAACGATTTTGAAGTAT+TGG | - | chr4.1:16880654-16880673 | MS.gene08339:CDS | 25.0% |
| !!! | TTTTGAAGTATTGGTCTATT+TGG | - | chr4.1:16880663-16880682 | MS.gene08339:CDS | 25.0% |
| AAATCGTTTGAAAACCTGAA+TGG | + | chr4.1:16880646-16880665 | None:intergenic | 30.0% | |
| AATATATACCTTGACCAACA+AGG | + | chr4.1:16880335-16880354 | None:intergenic | 30.0% | |
| ACCAGTAAAATTGATGAGAT+GGG | + | chr4.1:16881746-16881765 | None:intergenic | 30.0% | |
| AGTCAAGTAATTGATATCTG+AGG | + | chr4.1:16881013-16881032 | None:intergenic | 30.0% | |
| ATATTTACATCGAGACATTG+AGG | - | chr4.1:16880453-16880472 | MS.gene08339:intron | 30.0% | |
| CATATCATGGAACTTGAAAA+CGG | + | chr4.1:16881171-16881190 | None:intergenic | 30.0% | |
| GAAATATGCAAATTCTATGG+TGG | + | chr4.1:16880702-16880721 | None:intergenic | 30.0% | |
| ! | ACTTTGGAAGTAGAAGTTTA+TGG | + | chr4.1:16880610-16880629 | None:intergenic | 30.0% |
| ! | GTTCTTCTTGTTATAACATG+TGG | + | chr4.1:16880588-16880607 | None:intergenic | 30.0% |
| ! | TGAATTTTTCTCCATTATGC+AGG | - | chr4.1:16880275-16880294 | MS.gene08339:CDS | 30.0% |
| AAACAAGTGAGCCAAAATTG+AGG | + | chr4.1:16880092-16880111 | None:intergenic | 35.0% | |
| AACCCAAAGAACATCAGAAA+AGG | + | chr4.1:16880306-16880325 | None:intergenic | 35.0% | |
| ACCAACAATTCCAAGAACTA+TGG | + | chr4.1:16881141-16881160 | None:intergenic | 35.0% | |
| ACCCAAAGAACATCAGAAAA+GGG | + | chr4.1:16880305-16880324 | None:intergenic | 35.0% | |
| CATACATTGAAAACACGAAG+TGG | + | chr4.1:16880190-16880209 | None:intergenic | 35.0% | |
| CATTTCATTGCCATAGTTCT+TGG | - | chr4.1:16881128-16881147 | MS.gene08339:intron | 35.0% | |
| GACCAGTAAAATTGATGAGA+TGG | + | chr4.1:16881747-16881766 | None:intergenic | 35.0% | |
| TCAAGGAAGAAGACAATCAA+GGG | - | chr4.1:16881597-16881616 | MS.gene08339:intron | 35.0% | |
| TTCAAGGAAGAAGACAATCA+AGG | - | chr4.1:16881596-16881615 | MS.gene08339:intron | 35.0% | |
| ! | ACCCTTTTCTGATGTTCTTT+GGG | - | chr4.1:16880301-16880320 | MS.gene08339:CDS | 35.0% |
| ! | ATTGGTCTATTTGGTCACTA+TGG | - | chr4.1:16880672-16880691 | MS.gene08339:CDS | 35.0% |
| ! | GTTTTTGTGGATATGACAGT+TGG | - | chr4.1:16881787-16881806 | MS.gene08339:CDS | 35.0% |
| ! | TCCCATCTCATCAATTTTAC+TGG | - | chr4.1:16881742-16881761 | MS.gene08339:CDS | 35.0% |
| ! | TTCATTTTCCTTGTTGGTCA+AGG | - | chr4.1:16880324-16880343 | MS.gene08339:intron | 35.0% |
| ! | TTGTTCAAAGCCATGCTTTT+TGG | + | chr4.1:16881302-16881321 | None:intergenic | 35.0% |
| ! | TTTCAAGTAATGATCCACGT+CGG | + | chr4.1:16880386-16880405 | None:intergenic | 35.0% |
| !! | TCTCTTGTTTGGAGTTTTTG+TGG | - | chr4.1:16881774-16881793 | MS.gene08339:CDS | 35.0% |
| !! | TGGTAGAGCACTATTTTTCA+TGG | - | chr4.1:16881648-16881667 | MS.gene08339:intron | 35.0% |
| !! | TTTGGGTTCATTTTCCTTGT+TGG | - | chr4.1:16880318-16880337 | MS.gene08339:intron | 35.0% |
| !!! | ATGTCGCAGGTTAGTTTTTT+AGG | + | chr4.1:16881497-16881516 | None:intergenic | 35.0% |
| !!! | CGTTTTCAAGTTCCATGATA+TGG | - | chr4.1:16881169-16881188 | MS.gene08339:intron | 35.0% |
| !!! | CTATTTTTGCAGTGGCTTTT+TGG | - | chr4.1:16881559-16881578 | MS.gene08339:CDS | 35.0% |
| !!! | TCAATTTTGGCTCACTTGTT+TGG | - | chr4.1:16880091-16880110 | MS.gene08339:CDS | 35.0% |
| !!! | TGTCGCAGGTTAGTTTTTTA+GGG | + | chr4.1:16881496-16881515 | None:intergenic | 35.0% |
| AAAAGGGTGAACCTGCATAA+TGG | + | chr4.1:16880289-16880308 | None:intergenic | 40.0% | |
| ACCAAACAAGCATAAGGATG+AGG | + | chr4.1:16880126-16880145 | None:intergenic | 40.0% | |
| AGTCATATTCAATCCCCTCA+CGG | + | chr4.1:16880159-16880178 | None:intergenic | 40.0% | |
| ATGTTTACAGCCTCCATTCA+TGG | - | chr4.1:16881204-16881223 | MS.gene08339:intron | 40.0% | |
| CAACCAAGTTCACCATATCA+TGG | + | chr4.1:16881184-16881203 | None:intergenic | 40.0% | |
| CCAAACAAGCATAAGGATGA+GGG | + | chr4.1:16880125-16880144 | None:intergenic | 40.0% | |
| GCCATAGTTCTTGGAATTGT+TGG | - | chr4.1:16881137-16881156 | MS.gene08339:intron | 40.0% | |
| GGACTGACATTCATGTTTCA+AGG | - | chr4.1:16881580-16881599 | MS.gene08339:CDS | 40.0% | |
| GGTCTAGCAATTCTCTTGTT+TGG | - | chr4.1:16881763-16881782 | MS.gene08339:CDS | 40.0% | |
| GTTCCATGATATGGTGAACT+TGG | - | chr4.1:16881178-16881197 | MS.gene08339:intron | 40.0% | |
| TACGCTGAAAGACTTTCAGA+AGG | - | chr4.1:16881433-16881452 | MS.gene08339:intron | 40.0% | |
| TGATGAGATGGGATTCTCTT+TGG | + | chr4.1:16881735-16881754 | None:intergenic | 40.0% | |
| TGCAACATCACTTACCATTC+AGG | - | chr4.1:16880629-16880648 | MS.gene08339:intron | 40.0% | |
| TGGTAAGTGATGTTGCACTT+TGG | + | chr4.1:16880626-16880645 | None:intergenic | 40.0% | |
| TGTCCAAAAGATGTAGCGAT+GGG | - | chr4.1:16881406-16881425 | MS.gene08339:intron | 40.0% | |
| TGTGGATATGACAGTTGGTT+TGG | - | chr4.1:16881792-16881811 | MS.gene08339:CDS | 40.0% | |
| ! | CACCCTTTTCTGATGTTCTT+TGG | - | chr4.1:16880300-16880319 | MS.gene08339:CDS | 40.0% |
| ! | GACATTGAGGTGTTTGATGT+CGG | - | chr4.1:16880466-16880485 | MS.gene08339:intron | 40.0% |
| AAGACAATCAAGGGCTGCAA+TGG | - | chr4.1:16881606-16881625 | MS.gene08339:intron | 45.0% | |
| AGATGGGATTCTCTTTGGTG+TGG | + | chr4.1:16881730-16881749 | None:intergenic | 45.0% | |
| ATGTCTTACCACACAGTACC+AGG | - | chr4.1:16881068-16881087 | MS.gene08339:intron | 45.0% | |
| CAAAAGATGTAGCGATGGGT+TGG | - | chr4.1:16881410-16881429 | MS.gene08339:intron | 45.0% | |
| CACTAACAGGTTTGATGGAG+AGG | - | chr4.1:16881683-16881702 | MS.gene08339:intron | 45.0% | |
| CCCTCATCCTTATGCTTGTT+TGG | - | chr4.1:16880122-16880141 | MS.gene08339:CDS | 45.0% | |
| CTGCAAGCCAAACAAGCAAA+AGG | + | chr4.1:16881243-16881262 | None:intergenic | 45.0% | |
| CTGTCCAAAAGATGTAGCGA+TGG | - | chr4.1:16881405-16881424 | MS.gene08339:intron | 45.0% | |
| GAGGGGATTGAATATGACTC+TGG | - | chr4.1:16880160-16880179 | MS.gene08339:CDS | 45.0% | |
| GCAATTTGTGCTGCACTAAC+AGG | - | chr4.1:16881670-16881689 | MS.gene08339:intron | 45.0% | |
| GCAGCAACCAAACAAGCATA+AGG | + | chr4.1:16880132-16880151 | None:intergenic | 45.0% | |
| TACAGCCTCCATTCATGGAT+TGG | - | chr4.1:16881209-16881228 | MS.gene08339:intron | 45.0% | |
| TGCTGCACTAACAGGTTTGA+TGG | - | chr4.1:16881678-16881697 | MS.gene08339:intron | 45.0% | |
| TTCTGTGTTTCATGTGTGCC+TGG | + | chr4.1:16881089-16881108 | None:intergenic | 45.0% | |
| ! | CAACCCATCGCTACATCTTT+TGG | + | chr4.1:16881412-16881431 | None:intergenic | 45.0% |
| ! | CGCTACATCTTTTGGACAGT+GGG | + | chr4.1:16881404-16881423 | None:intergenic | 45.0% |
| ! | CTTGGCACCTTTTGCTTGTT+TGG | - | chr4.1:16881233-16881252 | MS.gene08339:intron | 45.0% |
| ! | GCTACATCTTTTGGACAGTG+GGG | + | chr4.1:16881403-16881422 | None:intergenic | 45.0% |
| ! | TCGCTACATCTTTTGGACAG+TGG | + | chr4.1:16881405-16881424 | None:intergenic | 45.0% |
| !! | CAAACAAGCAAAAGGTGCCA+AGG | + | chr4.1:16881235-16881254 | None:intergenic | 45.0% |
| !!! | CTTTTGCTTGTTTGGCTTGC+AGG | - | chr4.1:16881241-16881260 | MS.gene08339:intron | 45.0% |
| CAAGGCCAATCCATGAATGG+AGG | + | chr4.1:16881217-16881236 | None:intergenic | 50.0% | |
| TGCCAAGGCCAATCCATGAA+TGG | + | chr4.1:16881220-16881239 | None:intergenic | 50.0% | |
| TGGTTGCTGCATTACCGTGA+GGG | - | chr4.1:16880142-16880161 | MS.gene08339:CDS | 50.0% | |
| TTAAGATAGGTGGTCCGACG+TGG | - | chr4.1:16880369-16880388 | MS.gene08339:intron | 50.0% | |
| TTGGTTGCTGCATTACCGTG+AGG | - | chr4.1:16880141-16880160 | MS.gene08339:CDS | 50.0% | |
| !! | CTCCATTCATGGATTGGCCT+TGG | - | chr4.1:16881215-16881234 | MS.gene08339:intron | 50.0% |
| ATGGCTCCATGGCACATAGC+TGG | - | chr4.1:16881625-16881644 | MS.gene08339:intron | 55.0% | |
| CATGTGTGCCTGGTACTGTG+TGG | + | chr4.1:16881079-16881098 | None:intergenic | 55.0% | |
| CTACCACCAGCTATGTGCCA+TGG | + | chr4.1:16881634-16881653 | None:intergenic | 55.0% | |
| GGTTGCTGCATTACCGTGAG+GGG | - | chr4.1:16880143-16880162 | MS.gene08339:CDS | 55.0% | |
| CAAGGGCTGCAATGGCTCCA+TGG | - | chr4.1:16881614-16881633 | MS.gene08339:intron | 60.0% | |
| GCTCCATGGCACATAGCTGG+TGG | - | chr4.1:16881628-16881647 | MS.gene08339:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 16880073 | 16881831 | 16880073 | ID=MS.gene08339 |
| chr4.1 | mRNA | 16880073 | 16881831 | 16880073 | ID=MS.gene08339.t1;Parent=MS.gene08339 |
| chr4.1 | exon | 16881700 | 16881831 | 16881700 | ID=MS.gene08339.t1.exon1;Parent=MS.gene08339.t1 |
| chr4.1 | CDS | 16881700 | 16881831 | 16881700 | ID=cds.MS.gene08339.t1;Parent=MS.gene08339.t1 |
| chr4.1 | exon | 16881559 | 16881607 | 16881559 | ID=MS.gene08339.t1.exon2;Parent=MS.gene08339.t1 |
| chr4.1 | CDS | 16881559 | 16881607 | 16881559 | ID=cds.MS.gene08339.t1;Parent=MS.gene08339.t1 |
| chr4.1 | exon | 16880642 | 16880841 | 16880642 | ID=MS.gene08339.t1.exon3;Parent=MS.gene08339.t1 |
| chr4.1 | CDS | 16880642 | 16880841 | 16880642 | ID=cds.MS.gene08339.t1;Parent=MS.gene08339.t1 |
| chr4.1 | exon | 16880073 | 16880333 | 16880073 | ID=MS.gene08339.t1.exon4;Parent=MS.gene08339.t1 |
| chr4.1 | CDS | 16880073 | 16880333 | 16880073 | ID=cds.MS.gene08339.t1;Parent=MS.gene08339.t1 |
| Gene Sequence |
| Protein sequence |
