Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08652.t1 | KEH30032.1 | 86.6 | 402 | 37 | 1 | 1 | 385 | 1 | 402 | 7.10E-192 | 679.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08652.t1 | Q6DBP8 | 34.7 | 308 | 161 | 9 | 73 | 367 | 10 | 290 | 9.1e-39 | 162.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08652.t1 | A0A072UK09 | 86.6 | 402 | 37 | 1 | 1 | 385 | 1 | 402 | 5.1e-192 | 679.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08652.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058934 | MS.gene08652 | PPI |
| MS.gene31281 | MS.gene08652 | PPI |
| MS.gene68594 | MS.gene08652 | PPI |
| MS.gene028706 | MS.gene08652 | PPI |
| MS.gene08652 | MS.gene08700 | PPI |
| MS.gene08652 | MS.gene007672 | PPI |
| MS.gene028707 | MS.gene08652 | PPI |
| MS.gene007672 | MS.gene08652 | PPI |
| MS.gene08700 | MS.gene08652 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08652.t1 | MTR_4g058910 | 88.861 | 404 | 24 | 2 | 1 | 385 | 1 | 402 | 0.0 | 680 |
| MS.gene08652.t1 | MTR_2g094600 | 54.658 | 322 | 122 | 7 | 62 | 383 | 4 | 301 | 6.35e-103 | 306 |
| MS.gene08652.t1 | MTR_1g094930 | 39.631 | 217 | 96 | 5 | 197 | 381 | 23 | 236 | 2.24e-34 | 127 |
| MS.gene08652.t1 | MTR_1g094930 | 39.535 | 215 | 99 | 5 | 197 | 381 | 118 | 331 | 3.56e-34 | 129 |
| MS.gene08652.t1 | MTR_1g116010 | 78.462 | 65 | 14 | 0 | 297 | 361 | 164 | 228 | 5.74e-33 | 124 |
| MS.gene08652.t1 | MTR_1g046680 | 72.222 | 72 | 20 | 0 | 297 | 368 | 172 | 243 | 1.66e-31 | 120 |
| MS.gene08652.t1 | MTR_4g071590 | 72.059 | 68 | 19 | 0 | 296 | 363 | 210 | 277 | 1.84e-31 | 121 |
| MS.gene08652.t1 | MTR_4g471590 | 72.059 | 68 | 19 | 0 | 296 | 363 | 210 | 277 | 1.84e-31 | 121 |
| MS.gene08652.t1 | MTR_3g117380 | 69.444 | 72 | 22 | 0 | 292 | 363 | 224 | 295 | 5.60e-31 | 120 |
| MS.gene08652.t1 | MTR_6g032830 | 58.333 | 96 | 40 | 0 | 266 | 361 | 161 | 256 | 1.54e-30 | 117 |
| MS.gene08652.t1 | MTR_5g007600 | 66.279 | 86 | 28 | 1 | 278 | 363 | 241 | 325 | 1.54e-30 | 119 |
| MS.gene08652.t1 | MTR_5g007600 | 63.750 | 80 | 29 | 0 | 281 | 360 | 141 | 220 | 3.42e-27 | 110 |
| MS.gene08652.t1 | MTR_8g076340 | 68.000 | 75 | 22 | 1 | 297 | 371 | 218 | 290 | 1.99e-30 | 118 |
| MS.gene08652.t1 | MTR_7g085410 | 71.831 | 71 | 20 | 0 | 294 | 364 | 185 | 255 | 2.90e-30 | 117 |
| MS.gene08652.t1 | MTR_1g006650 | 73.134 | 67 | 18 | 0 | 297 | 363 | 234 | 300 | 3.30e-30 | 119 |
| MS.gene08652.t1 | MTR_8g013950 | 64.198 | 81 | 29 | 0 | 283 | 363 | 212 | 292 | 9.61e-30 | 117 |
| MS.gene08652.t1 | MTR_5g021340 | 68.000 | 75 | 22 | 1 | 297 | 371 | 300 | 372 | 1.16e-29 | 118 |
| MS.gene08652.t1 | MTR_3g109760 | 73.134 | 67 | 18 | 0 | 297 | 363 | 207 | 273 | 7.28e-29 | 114 |
| MS.gene08652.t1 | MTR_7g446110 | 35.374 | 147 | 86 | 1 | 212 | 358 | 111 | 248 | 2.93e-22 | 95.1 |
| MS.gene08652.t1 | MTR_7g445950 | 53.247 | 77 | 36 | 0 | 282 | 358 | 105 | 181 | 4.44e-22 | 92.8 |
| MS.gene08652.t1 | MTR_7g446070 | 51.948 | 77 | 37 | 0 | 282 | 358 | 117 | 193 | 2.83e-21 | 90.9 |
| MS.gene08652.t1 | MTR_7g445980 | 51.250 | 80 | 38 | 1 | 280 | 358 | 16 | 95 | 2.28e-19 | 82.8 |
| MS.gene08652.t1 | MTR_5g020230 | 37.662 | 77 | 42 | 2 | 257 | 329 | 80 | 154 | 3.86e-11 | 63.2 |
| MS.gene08652.t1 | MTR_7g112330 | 57.500 | 40 | 17 | 0 | 293 | 332 | 18 | 57 | 9.97e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08652.t1 | AT1G08010 | 34.494 | 316 | 151 | 10 | 73 | 367 | 10 | 290 | 4.16e-47 | 163 |
| MS.gene08652.t1 | AT1G08010 | 34.494 | 316 | 151 | 10 | 73 | 367 | 10 | 290 | 4.16e-47 | 163 |
| MS.gene08652.t1 | AT1G08010 | 34.494 | 316 | 151 | 10 | 73 | 367 | 10 | 290 | 4.16e-47 | 163 |
| MS.gene08652.t1 | AT1G08000 | 36.519 | 293 | 159 | 7 | 79 | 366 | 17 | 287 | 4.43e-43 | 152 |
| MS.gene08652.t1 | AT1G08000 | 36.519 | 293 | 159 | 7 | 79 | 366 | 17 | 287 | 4.43e-43 | 152 |
| MS.gene08652.t1 | AT2G28340 | 33.117 | 308 | 144 | 8 | 70 | 367 | 6 | 261 | 1.31e-34 | 129 |
| MS.gene08652.t1 | AT3G54810 | 77.778 | 72 | 16 | 0 | 292 | 363 | 224 | 295 | 9.91e-34 | 128 |
| MS.gene08652.t1 | AT3G54810 | 77.778 | 72 | 16 | 0 | 292 | 363 | 224 | 295 | 9.91e-34 | 128 |
| MS.gene08652.t1 | AT3G24050 | 71.429 | 70 | 20 | 0 | 294 | 363 | 191 | 260 | 1.25e-30 | 118 |
| MS.gene08652.t1 | AT4G32890 | 68.056 | 72 | 23 | 0 | 292 | 363 | 192 | 263 | 3.37e-30 | 118 |
| MS.gene08652.t1 | AT3G60530 | 69.014 | 71 | 22 | 0 | 297 | 367 | 158 | 228 | 3.57e-30 | 116 |
| MS.gene08652.t1 | AT4G36240 | 45.000 | 140 | 58 | 4 | 222 | 361 | 108 | 228 | 3.59e-30 | 116 |
| MS.gene08652.t1 | AT5G25830 | 71.642 | 67 | 19 | 0 | 297 | 363 | 219 | 285 | 1.34e-29 | 117 |
| MS.gene08652.t1 | AT5G66320 | 66.216 | 74 | 25 | 0 | 290 | 363 | 242 | 315 | 2.42e-29 | 116 |
| MS.gene08652.t1 | AT5G66320 | 66.216 | 74 | 25 | 0 | 290 | 363 | 242 | 315 | 2.42e-29 | 116 |
| MS.gene08652.t1 | AT2G45050 | 53.000 | 100 | 44 | 1 | 267 | 363 | 146 | 245 | 3.86e-29 | 114 |
| MS.gene08652.t1 | AT3G51080 | 65.789 | 76 | 24 | 1 | 297 | 372 | 221 | 294 | 7.24e-29 | 114 |
| MS.gene08652.t1 | AT4G34680 | 60.976 | 82 | 30 | 1 | 294 | 373 | 177 | 258 | 8.80e-29 | 113 |
| MS.gene08652.t1 | AT4G34680 | 60.976 | 82 | 30 | 1 | 294 | 373 | 177 | 258 | 8.80e-29 | 113 |
| MS.gene08652.t1 | AT3G45170 | 62.857 | 70 | 26 | 0 | 294 | 363 | 112 | 181 | 1.20e-27 | 108 |
| MS.gene08652.t1 | AT2G18380 | 54.545 | 44 | 19 | 1 | 286 | 329 | 82 | 124 | 6.02e-11 | 62.0 |
Find 79 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCATTGAAGGAGACATTT+TGG | 0.217499 | 4.1:+39423307 | None:intergenic |
| GAGAAATTGTTCACAAGATT+TGG | 0.237962 | 4.1:+39424996 | None:intergenic |
| TATTTATCATCAAACCTTTC+AGG | 0.244075 | 4.1:-39422730 | MS.gene08652:CDS |
| CAAGCATTGCATAGGGTCTT+AGG | 0.290975 | 4.1:+39422907 | None:intergenic |
| CTAGCTGCAGGCCGATATTC+AGG | 0.293194 | 4.1:+39422853 | None:intergenic |
| GTTAATCAGGAGACTGTTAA+AGG | 0.309270 | 4.1:-39422766 | MS.gene08652:CDS |
| GATACATTTATGTTAGAGTT+AGG | 0.318485 | 4.1:-39426291 | MS.gene08652:CDS |
| CAGGCCGATATTCAGGAAAT+AGG | 0.331499 | 4.1:+39422860 | None:intergenic |
| GGTCTTGGAAATCAGGAAAA+AGG | 0.338584 | 4.1:-39422788 | MS.gene08652:CDS |
| ACAAGAAGGTCTTGGAAATC+AGG | 0.346966 | 4.1:-39422795 | MS.gene08652:CDS |
| TCTGCAGTTCACGCAGTTGA+TGG | 0.376015 | 4.1:+39426245 | None:intergenic |
| GTCGCCTATTTCCTGAATAT+CGG | 0.393892 | 4.1:-39422864 | MS.gene08652:CDS |
| GCGTAAATTTGTTCCATTGA+AGG | 0.400336 | 4.1:+39423296 | None:intergenic |
| TGGGAGATATTGTCTTTCCT+TGG | 0.402736 | 4.1:+39423045 | None:intergenic |
| CTGAAACTGGGCTGTAGGTT+CGG | 0.407286 | 4.1:+39423268 | None:intergenic |
| TACCACGAGGACGCTTTGTC+GGG | 0.437518 | 4.1:+39423187 | None:intergenic |
| AAAGAAATTAACGGCGGTGG+TGG | 0.437736 | 4.1:+39426178 | None:intergenic |
| AAATTCTCACAAGAAGGTCT+TGG | 0.447787 | 4.1:-39422803 | MS.gene08652:CDS |
| TGCACTGATGCTTCAAAGGT+TGG | 0.449929 | 4.1:+39422829 | None:intergenic |
| TCAAAGGTTGGGCTAGCTGC+AGG | 0.450155 | 4.1:+39422841 | None:intergenic |
| GGCGCCTCTCAAGCTTCGAC+AGG | 0.458075 | 4.1:-39423158 | MS.gene08652:CDS |
| ATCCAAAATGTCTCCTTCAA+TGG | 0.458572 | 4.1:-39423309 | MS.gene08652:CDS |
| ATGCTTGTGGAGTTCGATAC+AGG | 0.460657 | 4.1:-39422891 | MS.gene08652:CDS |
| CATAGGGTCTTAGGACCCTT+AGG | 0.477379 | 4.1:+39422916 | None:intergenic |
| TCTCAATGCTATTAGAGAGC+TGG | 0.477442 | 4.1:+39423025 | None:intergenic |
| CGTGAACTGCAGATAGATAA+GGG | 0.483479 | 4.1:-39426235 | MS.gene08652:CDS |
| GGACGCTTTGTCGGGATCAC+TGG | 0.489854 | 4.1:+39423195 | None:intergenic |
| CACCAAGAGATGGTTCTTCA+AGG | 0.491420 | 4.1:+39425069 | None:intergenic |
| GGAAACTGATGGTGTGGAAC+AGG | 0.492036 | 4.1:-39425114 | MS.gene08652:CDS |
| CTCAATGCTATTAGAGAGCT+GGG | 0.500421 | 4.1:+39423026 | None:intergenic |
| AAGACTGCTGGACCTGCATA+TGG | 0.501903 | 4.1:-39423345 | MS.gene08652:CDS |
| TTACCACGAGGACGCTTTGT+CGG | 0.503422 | 4.1:+39423186 | None:intergenic |
| CACCTTGAAGAACCATCTCT+TGG | 0.504280 | 4.1:-39425071 | MS.gene08652:CDS |
| GCACTGATGCTTCAAAGGTT+GGG | 0.507344 | 4.1:+39422830 | None:intergenic |
| GCGTGAACTGCAGATAGATA+AGG | 0.514186 | 4.1:-39426236 | MS.gene08652:CDS |
| CAATGGAGAGAGGGGCCTAA+GGG | 0.517972 | 4.1:-39422931 | MS.gene08652:CDS |
| CTGCTAATATGAAGAACAGC+TGG | 0.521475 | 4.1:-39425220 | MS.gene08652:CDS |
| AAACAGCTTGGAAAGACTGC+TGG | 0.521813 | 4.1:-39423357 | MS.gene08652:intron |
| TGTGGAGTTCGATACAGGTC+TGG | 0.526380 | 4.1:-39422886 | MS.gene08652:CDS |
| ACAATGGAGAGAGGGGCCTA+AGG | 0.527062 | 4.1:-39422932 | MS.gene08652:CDS |
| TGAAAGCAGTAGTTATTCCT+CGG | 0.529501 | 4.1:-39423241 | MS.gene08652:CDS |
| GGTGTGTCGGATGAGATTCT+TGG | 0.532775 | 4.1:-39425176 | MS.gene08652:CDS |
| AAACCTTTCAGGAATTCTCT+AGG | 0.536952 | 4.1:-39422719 | None:intergenic |
| CTGATGGTGTGGAACAGGAT+TGG | 0.558249 | 4.1:-39425109 | MS.gene08652:CDS |
| GAACTCCACAAGCATTGCAT+AGG | 0.559486 | 4.1:+39422899 | None:intergenic |
| TGAAACGCCACAATGGAGAG+AGG | 0.562131 | 4.1:-39422941 | MS.gene08652:CDS |
| GCACTCAAATTCTCACAAGA+AGG | 0.564610 | 4.1:-39422809 | MS.gene08652:CDS |
| TGAGTGCACTGATGCTTCAA+AGG | 0.568513 | 4.1:+39422825 | None:intergenic |
| CAATCGGATAAACAGCGTGC+TGG | 0.568743 | 4.1:-39423096 | MS.gene08652:CDS |
| TGTCGAAGCTTGAGAGGCGC+CGG | 0.571004 | 4.1:+39423160 | None:intergenic |
| AGAGCCTGTCGAAGCTTGAG+AGG | 0.571997 | 4.1:+39423154 | None:intergenic |
| TCAGTTTCCACATCTTCAAG+TGG | 0.590091 | 4.1:+39425128 | None:intergenic |
| AACTCCACAAGCATTGCATA+GGG | 0.590903 | 4.1:+39422900 | None:intergenic |
| TATCCTAGAGAATTCCTGAA+AGG | 0.593357 | 4.1:+39422716 | None:intergenic |
| AAGACCCTATGCAATGCTTG+TGG | 0.595397 | 4.1:-39422904 | MS.gene08652:CDS |
| GAATGATGATGATGAGATGA+GGG | 0.602624 | 4.1:+39426206 | None:intergenic |
| TTAGGCCCCTCTCTCCATTG+TGG | 0.615985 | 4.1:+39422934 | None:intergenic |
| GAAACGCCACAATGGAGAGA+GGG | 0.617261 | 4.1:-39422940 | MS.gene08652:CDS |
| TAGAAAATGTACGCATTGTG+AGG | 0.619646 | 4.1:-39422968 | MS.gene08652:CDS |
| TCGCCGCGTAGCTCAAATGC+CGG | 0.621988 | 4.1:+39425035 | None:intergenic |
| AGCGTCCTCGTGGTAAACGC+CGG | 0.626063 | 4.1:-39423179 | MS.gene08652:CDS |
| AGAAAAGAGACATGTCACAT+GGG | 0.632184 | 4.1:-39426336 | None:intergenic |
| TGATGATGATGAGATGAGGG+AGG | 0.633605 | 4.1:+39426209 | None:intergenic |
| TAGAAAAGAGACATGTCACA+TGG | 0.642596 | 4.1:-39426337 | None:intergenic |
| GAAAAGAGACATGTCACATG+GGG | 0.645423 | 4.1:-39426335 | None:intergenic |
| CTTGAAGATGTGGAAACTGA+TGG | 0.650171 | 4.1:-39425125 | MS.gene08652:CDS |
| ACTGAGAAAACACCAAGAGA+TGG | 0.656666 | 4.1:+39425059 | None:intergenic |
| TGAATGATGATGATGAGATG+AGG | 0.666818 | 4.1:+39426205 | None:intergenic |
| AAAGTTGTAATTCTCAACCG+AGG | 0.667884 | 4.1:+39423224 | None:intergenic |
| ATCCCGACAAAGCGTCCTCG+TGG | 0.667975 | 4.1:-39423189 | MS.gene08652:CDS |
| AGATGTGGAAACTGATGGTG+TGG | 0.668716 | 4.1:-39425120 | MS.gene08652:CDS |
| GTTTGATGATAAATACAACA+TGG | 0.669284 | 4.1:+39422738 | None:intergenic |
| AAACGCCACAATGGAGAGAG+GGG | 0.674715 | 4.1:-39422939 | MS.gene08652:CDS |
| TTCAATGGAACAAATTTACG+CGG | 0.676345 | 4.1:-39423294 | MS.gene08652:CDS |
| AGGTAACTGAAACGCCACAA+TGG | 0.680689 | 4.1:-39422948 | MS.gene08652:CDS |
| AGGCGCCGGCGTTTACCACG+AGG | 0.716581 | 4.1:+39423174 | None:intergenic |
| AAAAGAGACATGTCACATGG+GGG | 0.731690 | 4.1:-39426334 | None:intergenic |
| GTACCGGCATTTGAGCTACG+CGG | 0.750665 | 4.1:-39425038 | MS.gene08652:CDS |
| TCAAGCTTAAAAGATCGACG+AGG | 0.787048 | 4.1:-39424579 | MS.gene08652:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATTTTTTTAAAATAA+GGG | - | chr4.1:39425325-39425344 | MS.gene08652:intron | 0.0% |
| !! | GTTATATTTATATACTTTAA+GGG | - | chr4.1:39423665-39423684 | MS.gene08652:intron | 10.0% |
| !! | TGTTATATTTATATACTTTA+AGG | - | chr4.1:39423664-39423683 | MS.gene08652:intron | 10.0% |
| !! | AAATGAAAAAGAAAGAATAT+TGG | + | chr4.1:39422924-39422943 | None:intergenic | 15.0% |
| !! | AATTATTATATGTTTAGAGA+CGG | - | chr4.1:39425356-39425375 | MS.gene08652:intron | 15.0% |
| !! | ACTGAAAAAAAAGAAATTAA+CGG | + | chr4.1:39422879-39422898 | None:intergenic | 15.0% |
| !!! | ATATTTTTTTAAAATAAGGG+AGG | - | chr4.1:39425328-39425347 | MS.gene08652:intron | 15.0% |
| !!! | ATGTGTTATAAAACTTTTTT+GGG | - | chr4.1:39424585-39424604 | MS.gene08652:CDS | 15.0% |
| !!! | TATTTTTTTAAAATAAGGGA+GGG | - | chr4.1:39425329-39425348 | MS.gene08652:intron | 15.0% |
| !!! | TTTACTTTTATGATACATTT+TGG | - | chr4.1:39424737-39424756 | MS.gene08652:intron | 15.0% |
| !!! | TTTTTTGACAAGAATTTTAA+TGG | - | chr4.1:39423848-39423867 | MS.gene08652:intron | 15.0% |
| !! | AAAGTCTTAAAGACATAATA+TGG | + | chr4.1:39423031-39423050 | None:intergenic | 20.0% |
| !! | AGATTGTACATTATGAATAA+TGG | + | chr4.1:39422975-39422994 | None:intergenic | 20.0% |
| !! | ATAATTACAACTTCAAAACA+TGG | + | chr4.1:39425010-39425029 | None:intergenic | 20.0% |
| !! | ATTATTATATGTTTAGAGAC+GGG | - | chr4.1:39425357-39425376 | MS.gene08652:intron | 20.0% |
| !! | CTCTGATAATAAAAAATATG+CGG | + | chr4.1:39424220-39424239 | None:intergenic | 20.0% |
| !! | GATTAAAACATTATGTACTA+TGG | - | chr4.1:39425591-39425610 | MS.gene08652:intron | 20.0% |
| !! | TGATAAATTAATTATGTGCA+TGG | - | chr4.1:39424147-39424166 | MS.gene08652:intron | 20.0% |
| !!! | AATTTCTTTTTTTTCAGTTC+CGG | - | chr4.1:39422881-39422900 | MS.gene08652:CDS | 20.0% |
| !!! | ATTTTTTTAAAATAAGGGAG+GGG | - | chr4.1:39425330-39425349 | MS.gene08652:intron | 20.0% |
| !!! | GATGTGTTATAAAACTTTTT+TGG | - | chr4.1:39424584-39424603 | MS.gene08652:CDS | 20.0% |
| !!! | TAATGTTTTAATCAAACTCA+AGG | + | chr4.1:39425584-39425603 | None:intergenic | 20.0% |
| !!! | TACTTTAAGAAGTAAATTGA+TGG | - | chr4.1:39423708-39423727 | MS.gene08652:intron | 20.0% |
| !!! | TGTGTTATAAAACTTTTTTG+GGG | - | chr4.1:39424586-39424605 | MS.gene08652:CDS | 20.0% |
| !!! | TTCTTTTTGAAATGTTTTCT+AGG | - | chr4.1:39424549-39424568 | MS.gene08652:intron | 20.0% |
| ! | AAATAAGCGAAACAAAATTG+AGG | + | chr4.1:39422950-39422969 | None:intergenic | 25.0% |
| ! | GAAAAAAAAGAAATTAACGG+CGG | + | chr4.1:39422876-39422895 | None:intergenic | 25.0% |
| ! | GATACATTTATGTTAGAGTT+AGG | - | chr4.1:39422754-39422773 | MS.gene08652:CDS | 25.0% |
| ! | GCTCAAAATATGTTCAAAAA+AGG | - | chr4.1:39424817-39424836 | MS.gene08652:intron | 25.0% |
| ! | TATTTATCATCAAACCTTTC+AGG | - | chr4.1:39426315-39426334 | MS.gene08652:CDS | 25.0% |
| !! | AAAGTATGGAAGAATTTTAG+TGG | - | chr4.1:39425555-39425574 | MS.gene08652:intron | 25.0% |
| !! | GTTTGATGATAAATACAACA+TGG | + | chr4.1:39426310-39426329 | None:intergenic | 25.0% |
| !! | TATACACTTTAGAGACTAAA+TGG | + | chr4.1:39423502-39423521 | None:intergenic | 25.0% |
| !! | TCTTCTTAGACGTTTTTAAT+TGG | - | chr4.1:39424316-39424335 | MS.gene08652:intron | 25.0% |
| !! | TTCGTGTATGATTAATTTTC+AGG | - | chr4.1:39424864-39424883 | MS.gene08652:intron | 25.0% |
| !!! | GTTTAAGTATCTTTTTGACT+CGG | - | chr4.1:39424526-39424545 | MS.gene08652:intron | 25.0% |
| !!! | TTGCTAGTTGATTTGATTTT+CGG | + | chr4.1:39423310-39423329 | None:intergenic | 25.0% |
| !!! | TTTTAGTTGTGATGAATAGA+TGG | - | chr4.1:39425029-39425048 | MS.gene08652:CDS | 25.0% |
| AAAGGCTAATTCGTTTGATA+GGG | - | chr4.1:39424267-39424286 | MS.gene08652:intron | 30.0% | |
| AAATCTGTCTCAAATTCTCT+TGG | - | chr4.1:39424920-39424939 | MS.gene08652:intron | 30.0% | |
| AACAATCAGATGCTAATTTC+TGG | + | chr4.1:39425643-39425662 | None:intergenic | 30.0% | |
| AATCAGGAAAAAGGTTAATC+AGG | - | chr4.1:39426266-39426285 | MS.gene08652:CDS | 30.0% | |
| ACGGATTTCATATACTTTAG+GGG | - | chr4.1:39423636-39423655 | MS.gene08652:intron | 30.0% | |
| AGTATCCTGCAAAAAGATTA+GGG | + | chr4.1:39423807-39423826 | None:intergenic | 30.0% | |
| CTGAACACAAATCATGATAA+TGG | - | chr4.1:39424762-39424781 | MS.gene08652:intron | 30.0% | |
| GAGAAATTGTTCACAAGATT+TGG | + | chr4.1:39424052-39424071 | None:intergenic | 30.0% | |
| GATTCTCAATTACTAATGGA+TGG | - | chr4.1:39423776-39423795 | MS.gene08652:intron | 30.0% | |
| GTTCTTCAAATAAAACAGCT+TGG | - | chr4.1:39425676-39425695 | MS.gene08652:intron | 30.0% | |
| GTTGGATTCTCAATTACTAA+TGG | - | chr4.1:39423772-39423791 | MS.gene08652:intron | 30.0% | |
| TACTTCAGAGACTAAATTGA+CGG | + | chr4.1:39423467-39423486 | None:intergenic | 30.0% | |
| TATCACTGAATTACAAAGCT+AGG | - | chr4.1:39425426-39425445 | MS.gene08652:intron | 30.0% | |
| TGCTTTCAAAAACTGAAACT+GGG | + | chr4.1:39425792-39425811 | None:intergenic | 30.0% | |
| TTCAATGGAACAAATTTACG+CGG | - | chr4.1:39425751-39425770 | MS.gene08652:intron | 30.0% | |
| TTGCAACTTAAAGTCTATGT+AGG | - | chr4.1:39425204-39425223 | MS.gene08652:CDS | 30.0% | |
| ! | AGCGACATATTTTATATGCT+TGG | + | chr4.1:39423543-39423562 | None:intergenic | 30.0% |
| ! | ATAGGGTTTATCCTTTTCAA+CGG | - | chr4.1:39424284-39424303 | MS.gene08652:intron | 30.0% |
| ! | GACGGATTTCATATACTTTA+GGG | - | chr4.1:39423635-39423654 | MS.gene08652:intron | 30.0% |
| ! | GCGACATATTTTATATGCTT+GGG | + | chr4.1:39423542-39423561 | None:intergenic | 30.0% |
| ! | TAATTTTACTCGCATGCTTT+TGG | - | chr4.1:39425272-39425291 | MS.gene08652:intron | 30.0% |
| !! | CAAGAATTTTAATGGTGTGT+CGG | - | chr4.1:39423856-39423875 | MS.gene08652:intron | 30.0% |
| !! | TGACGGATTTCATATACTTT+AGG | - | chr4.1:39423634-39423653 | MS.gene08652:intron | 30.0% |
| !! | TTTTGAAAAGGAGGTATGAA+TGG | + | chr4.1:39425925-39425944 | None:intergenic | 30.0% |
| !!! | TGCTAGTTGATTTGATTTTC+GGG | + | chr4.1:39423309-39423328 | None:intergenic | 30.0% |
| AAAAAAGAAATTAACGGCGG+TGG | + | chr4.1:39422873-39422892 | None:intergenic | 35.0% | |
| AAAGTTGTAATTCTCAACCG+AGG | + | chr4.1:39425824-39425843 | None:intergenic | 35.0% | |
| AAATTCTCACAAGAAGGTCT+TGG | - | chr4.1:39426242-39426261 | MS.gene08652:CDS | 35.0% | |
| AACTCAATCAACCTAGTCAT+TGG | + | chr4.1:39425186-39425205 | None:intergenic | 35.0% | |
| AATGTAAGAGACTAACGTGA+CGG | - | chr4.1:39423580-39423599 | MS.gene08652:intron | 35.0% | |
| AATTATCAGATGCCATCCTA+CGG | + | chr4.1:39425469-39425488 | None:intergenic | 35.0% | |
| AGTGTGAAGTAGCATATGTT+GGG | - | chr4.1:39423749-39423768 | MS.gene08652:intron | 35.0% | |
| ATAGTACTCATACCTTAACG+TGG | - | chr4.1:39424946-39424965 | MS.gene08652:intron | 35.0% | |
| ATCATCTATCGATCTTATCC+TGG | + | chr4.1:39425128-39425147 | None:intergenic | 35.0% | |
| ATCCAAAATGTCTCCTTCAA+TGG | - | chr4.1:39425736-39425755 | MS.gene08652:intron | 35.0% | |
| ATGGGGGAATAAGAAAAAAG+TGG | - | chr4.1:39422727-39422746 | MS.gene08652:CDS | 35.0% | |
| CAAAGGCTAATTCGTTTGAT+AGG | - | chr4.1:39424266-39424285 | MS.gene08652:intron | 35.0% | |
| CACAGAGAAAATCACTTGAA+AGG | + | chr4.1:39425514-39425533 | None:intergenic | 35.0% | |
| CAGTATCCTGCAAAAAGATT+AGG | + | chr4.1:39423808-39423827 | None:intergenic | 35.0% | |
| CTGCTTTCAAAAACTGAAAC+TGG | + | chr4.1:39425793-39425812 | None:intergenic | 35.0% | |
| GCGTGTATACATGTAAAGTA+TGG | - | chr4.1:39425541-39425560 | MS.gene08652:intron | 35.0% | |
| GGTAATGAATGACATTCCTT+TGG | - | chr4.1:39425095-39425114 | MS.gene08652:CDS | 35.0% | |
| GTAATTGCTTAATGTTCCCA+TGG | - | chr4.1:39423426-39423445 | MS.gene08652:intron | 35.0% | |
| GTATCCTGCAAAAAGATTAG+GGG | + | chr4.1:39423806-39423825 | None:intergenic | 35.0% | |
| GTTAATCAGGAGACTGTTAA+AGG | - | chr4.1:39426279-39426298 | MS.gene08652:CDS | 35.0% | |
| GTTTATTCTTCCTCTACCAT+GGG | + | chr4.1:39423445-39423464 | None:intergenic | 35.0% | |
| TAGAAAATGTACGCATTGTG+AGG | - | chr4.1:39426077-39426096 | MS.gene08652:intron | 35.0% | |
| TATCCTGCAAAAAGATTAGG+GGG | + | chr4.1:39423805-39423824 | None:intergenic | 35.0% | |
| TATGCAGTAGGTAGTATTGT+TGG | - | chr4.1:39423366-39423385 | MS.gene08652:intron | 35.0% | |
| TGAAAGCAGTAGTTATTCCT+CGG | - | chr4.1:39425804-39425823 | MS.gene08652:intron | 35.0% | |
| TGGGGGAATAAGAAAAAAGT+GGG | - | chr4.1:39422728-39422747 | MS.gene08652:CDS | 35.0% | |
| TTACTACAATGATGTTGTGC+AGG | - | chr4.1:39424408-39424427 | MS.gene08652:intron | 35.0% | |
| ! | ATTGAAGGAGACATTTTGGA+TGG | + | chr4.1:39425737-39425756 | None:intergenic | 35.0% |
| ! | GAATGATGATGATGAGATGA+GGG | + | chr4.1:39422842-39422861 | None:intergenic | 35.0% |
| ! | GACTGGTTATCTTATCAGAA+TGG | - | chr4.1:39423339-39423358 | MS.gene08652:CDS | 35.0% |
| ! | GCGTAAATTTGTTCCATTGA+AGG | + | chr4.1:39425752-39425771 | None:intergenic | 35.0% |
| ! | TAAGACTTTGTTTGCCACTT+GGG | - | chr4.1:39423042-39423061 | MS.gene08652:CDS | 35.0% |
| ! | TAGGGTTTATCCTTTTCAAC+GGG | - | chr4.1:39424285-39424304 | MS.gene08652:intron | 35.0% |
| ! | TATGCTTGCTTTGATGACTA+TGG | - | chr4.1:39424348-39424367 | MS.gene08652:intron | 35.0% |
| ! | TCCTTTTCAAAAGCAGCAAT+CGG | - | chr4.1:39425933-39425952 | MS.gene08652:intron | 35.0% |
| ! | TGAATGATGATGATGAGATG+AGG | + | chr4.1:39422843-39422862 | None:intergenic | 35.0% |
| ! | TGATGACTATGGCATTTTGT+TGG | - | chr4.1:39424359-39424378 | MS.gene08652:intron | 35.0% |
| ! | TGATTTTCCACTTGAAGATG+TGG | - | chr4.1:39423910-39423929 | MS.gene08652:intron | 35.0% |
| ! | TTAAGACTTTGTTTGCCACT+TGG | - | chr4.1:39423041-39423060 | MS.gene08652:CDS | 35.0% |
| ! | TTCCATTGAAGGAGACATTT+TGG | + | chr4.1:39425741-39425760 | None:intergenic | 35.0% |
| ! | TTGAAGGAGACATTTTGGAT+GGG | + | chr4.1:39425736-39425755 | None:intergenic | 35.0% |
| !! | CTTTCAAGTGATTTTCTCTG+TGG | - | chr4.1:39425512-39425531 | MS.gene08652:intron | 35.0% |
| !! | TTGTTGGTCAGGATTTTTAG+CGG | - | chr4.1:39424375-39424394 | MS.gene08652:intron | 35.0% |
| AAAAACTGAAACTGGGCTGT+AGG | + | chr4.1:39425785-39425804 | None:intergenic | 40.0% | |
| ACAAGAAGGTCTTGGAAATC+AGG | - | chr4.1:39426250-39426269 | MS.gene08652:CDS | 40.0% | |
| ACTAGCAAACAAAGCTTGAC+TGG | - | chr4.1:39423322-39423341 | MS.gene08652:CDS | 40.0% | |
| ACTGAGAAAACACCAAGAGA+TGG | + | chr4.1:39423989-39424008 | None:intergenic | 40.0% | |
| AGAGTCCTGTTGTGTATGTT+TGG | - | chr4.1:39424236-39424255 | MS.gene08652:intron | 40.0% | |
| AGCAACCAAACATACACAAC+AGG | + | chr4.1:39424244-39424263 | None:intergenic | 40.0% | |
| ATTATCAGATGCCATCCTAC+GGG | + | chr4.1:39425468-39425487 | None:intergenic | 40.0% | |
| CATTATGCAGAGCCCAAAAA+AGG | - | chr4.1:39425977-39425996 | MS.gene08652:intron | 40.0% | |
| CGTGAACTGCAGATAGATAA+GGG | - | chr4.1:39422810-39422829 | MS.gene08652:CDS | 40.0% | |
| CTCAATGCTATTAGAGAGCT+GGG | + | chr4.1:39426022-39426041 | None:intergenic | 40.0% | |
| CTCAGAAAGTGAGAAAGTTC+TGG | - | chr4.1:39424981-39425000 | MS.gene08652:intron | 40.0% | |
| CTGCTAATATGAAGAACAGC+TGG | - | chr4.1:39423825-39423844 | MS.gene08652:intron | 40.0% | |
| CTTGAAGATGGTTTATGGCT+AGG | - | chr4.1:39425066-39425085 | MS.gene08652:CDS | 40.0% | |
| CTTGAAGATGTGGAAACTGA+TGG | - | chr4.1:39423920-39423939 | MS.gene08652:intron | 40.0% | |
| GAAAGTTACACCCGTTGAAA+AGG | + | chr4.1:39424298-39424317 | None:intergenic | 40.0% | |
| GACCATCATACAGTCATCAA+CGG | - | chr4.1:39425390-39425409 | MS.gene08652:intron | 40.0% | |
| GAGTGTGAAGTAGCATATGT+TGG | - | chr4.1:39423748-39423767 | MS.gene08652:intron | 40.0% | |
| GCACTCAAATTCTCACAAGA+AGG | - | chr4.1:39426236-39426255 | MS.gene08652:CDS | 40.0% | |
| GGTCTTGGAAATCAGGAAAA+AGG | - | chr4.1:39426257-39426276 | MS.gene08652:CDS | 40.0% | |
| GGTGTTCAACCTAACAGTAA+CGG | + | chr4.1:39423098-39423117 | None:intergenic | 40.0% | |
| GGTTTATTCTTCCTCTACCA+TGG | + | chr4.1:39423446-39423465 | None:intergenic | 40.0% | |
| GTATGTTTGGTTGCTTGCAA+AGG | - | chr4.1:39424249-39424268 | MS.gene08652:intron | 40.0% | |
| GTCGCCTATTTCCTGAATAT+CGG | - | chr4.1:39426181-39426200 | MS.gene08652:CDS | 40.0% | |
| GTGTGAAGTAGCATATGTTG+GGG | - | chr4.1:39423750-39423769 | MS.gene08652:intron | 40.0% | |
| GTGTGCTTGAAGATGGTTTA+TGG | - | chr4.1:39425061-39425080 | MS.gene08652:CDS | 40.0% | |
| TACTCATACCTTAACGTGGA+GGG | - | chr4.1:39424950-39424969 | MS.gene08652:intron | 40.0% | |
| TATATGTTTAGAGACGGGAG+AGG | - | chr4.1:39425362-39425381 | MS.gene08652:intron | 40.0% | |
| TCAAGCTTAAAAGATCGACG+AGG | - | chr4.1:39424466-39424485 | MS.gene08652:intron | 40.0% | |
| TCAATCAACCTAGTCATTGG+CGG | + | chr4.1:39425183-39425202 | None:intergenic | 40.0% | |
| TCAGTTTCCACATCTTCAAG+TGG | + | chr4.1:39423920-39423939 | None:intergenic | 40.0% | |
| TCTCAATGCTATTAGAGAGC+TGG | + | chr4.1:39426023-39426042 | None:intergenic | 40.0% | |
| TGGGAGATATTGTCTTTCCT+TGG | + | chr4.1:39426003-39426022 | None:intergenic | 40.0% | |
| TTCATGTGTGTGCTTGAAGA+TGG | - | chr4.1:39425054-39425073 | MS.gene08652:CDS | 40.0% | |
| ! | AACTCCACAAGCATTGCATA+GGG | + | chr4.1:39426148-39426167 | None:intergenic | 40.0% |
| ! | ACGAGGACTAGTAAGTGAAA+GGG | - | chr4.1:39424483-39424502 | MS.gene08652:intron | 40.0% |
| ! | ACTATGGCATTTTGTTGGTC+AGG | - | chr4.1:39424364-39424383 | MS.gene08652:intron | 40.0% |
| ! | TTTCCCCCTAATCTTTTTGC+AGG | - | chr4.1:39423799-39423818 | MS.gene08652:intron | 40.0% |
| !! | GGAATAGTTTTGCCATATGC+AGG | + | chr4.1:39425715-39425734 | None:intergenic | 40.0% |
| !! | TTTGTTTGCCACTTGGGTTT+TGG | - | chr4.1:39423048-39423067 | MS.gene08652:CDS | 40.0% |
| !!! | GATTGCTGCTTTTGAAAAGG+AGG | + | chr4.1:39425934-39425953 | None:intergenic | 40.0% |
| !!! | GTCTTTCCTTGGCCTTTTTT+GGG | + | chr4.1:39425992-39426011 | None:intergenic | 40.0% |
| !!! | TCCGATTGCTGCTTTTGAAA+AGG | + | chr4.1:39425937-39425956 | None:intergenic | 40.0% |
| !!! | TCTTGGTGTTTTCTCAGTAC+CGG | - | chr4.1:39423991-39424010 | MS.gene08652:intron | 40.0% |
| !!! | TGTCTTTCCTTGGCCTTTTT+TGG | + | chr4.1:39425993-39426012 | None:intergenic | 40.0% |
| !!! | TGTTGGTCAGGATTTTTAGC+GGG | - | chr4.1:39424376-39424395 | MS.gene08652:intron | 40.0% |
| AAACAGCTTGGAAAGACTGC+TGG | - | chr4.1:39425688-39425707 | MS.gene08652:intron | 45.0% | |
| AAAGAAATTAACGGCGGTGG+TGG | + | chr4.1:39422870-39422889 | None:intergenic | 45.0% | |
| AAGACCCTATGCAATGCTTG+TGG | - | chr4.1:39426141-39426160 | MS.gene08652:intron | 45.0% | |
| ACTCATACCTTAACGTGGAG+GGG | - | chr4.1:39424951-39424970 | MS.gene08652:intron | 45.0% | |
| AGGTAACTGAAACGCCACAA+TGG | - | chr4.1:39426097-39426116 | MS.gene08652:intron | 45.0% | |
| ATGCTTGTGGAGTTCGATAC+AGG | - | chr4.1:39426154-39426173 | MS.gene08652:intron | 45.0% | |
| CACCAAGAGATGGTTCTTCA+AGG | + | chr4.1:39423979-39423998 | None:intergenic | 45.0% | |
| CACCTTGAAGAACCATCTCT+TGG | - | chr4.1:39423974-39423993 | MS.gene08652:intron | 45.0% | |
| CAGAATGGTGCATATGCAGT+AGG | - | chr4.1:39423354-39423373 | MS.gene08652:CDS | 45.0% | |
| CAGGCCGATATTCAGGAAAT+AGG | + | chr4.1:39426188-39426207 | None:intergenic | 45.0% | |
| CAGTAACTAGTGACGAGTGA+CGG | - | chr4.1:39423617-39423636 | MS.gene08652:intron | 45.0% | |
| GAAGTAGCATATGTTGGGGT+TGG | - | chr4.1:39423754-39423773 | MS.gene08652:intron | 45.0% | |
| GCGTGAACTGCAGATAGATA+AGG | - | chr4.1:39422809-39422828 | MS.gene08652:CDS | 45.0% | |
| GCTTAATGTTCCCATGGTAG+AGG | - | chr4.1:39423432-39423451 | MS.gene08652:intron | 45.0% | |
| GGACATTTGAAGAGACTCAC+CGG | + | chr4.1:39422903-39422922 | None:intergenic | 45.0% | |
| GTACTCATACCTTAACGTGG+AGG | - | chr4.1:39424949-39424968 | MS.gene08652:intron | 45.0% | |
| GTTCAACCTAACAGTAACGG+AGG | + | chr4.1:39423095-39423114 | None:intergenic | 45.0% | |
| TATACGCCTCCGTTACTGTT+AGG | - | chr4.1:39423086-39423105 | MS.gene08652:CDS | 45.0% | |
| TCCATCCAAACAGCAAAGAC+AGG | + | chr4.1:39424096-39424115 | None:intergenic | 45.0% | |
| TGGTTTATGGCTAGGTAGCA+TGG | - | chr4.1:39425074-39425093 | MS.gene08652:CDS | 45.0% | |
| TTATCCTGGTTGTCAGCCAA+AGG | + | chr4.1:39425114-39425133 | None:intergenic | 45.0% | |
| ! | AGATGTGGAAACTGATGGTG+TGG | - | chr4.1:39423925-39423944 | MS.gene08652:intron | 45.0% |
| ! | CAAGCATTGCATAGGGTCTT+AGG | + | chr4.1:39426141-39426160 | None:intergenic | 45.0% |
| ! | CGAGGACTAGTAAGTGAAAG+GGG | - | chr4.1:39424484-39424503 | MS.gene08652:intron | 45.0% |
| ! | GAACTCCACAAGCATTGCAT+AGG | + | chr4.1:39426149-39426168 | None:intergenic | 45.0% |
| ! | GACGAGGACTAGTAAGTGAA+AGG | - | chr4.1:39424482-39424501 | MS.gene08652:intron | 45.0% |
| ! | GCACTGATGCTTCAAAGGTT+GGG | + | chr4.1:39426218-39426237 | None:intergenic | 45.0% |
| ! | TGAGTGCACTGATGCTTCAA+AGG | + | chr4.1:39426223-39426242 | None:intergenic | 45.0% |
| ! | TGATGATGATGAGATGAGGG+AGG | + | chr4.1:39422839-39422858 | None:intergenic | 45.0% |
| ! | TGCACTGATGCTTCAAAGGT+TGG | + | chr4.1:39426219-39426238 | None:intergenic | 45.0% |
| !! | CACCGTTGATGACTGTATGA+TGG | + | chr4.1:39425395-39425414 | None:intergenic | 45.0% |
| !! | GTGATTTTCTCTGTGGACTG+TGG | - | chr4.1:39425519-39425538 | MS.gene08652:intron | 45.0% |
| !! | TCCTGTCTTTGCTGTTTGGA+TGG | - | chr4.1:39424092-39424111 | MS.gene08652:intron | 45.0% |
| !!! | TTTGCCACTTGGGTTTTGGA+GGG | - | chr4.1:39423052-39423071 | MS.gene08652:CDS | 45.0% |
| !!! | GATAATATTTTTTTAAAATA+AGG | - | chr4.1:39425324-39425343 | MS.gene08652:intron | 5.0% |
| AAAACTCGCACACAACTGCG+AGG | + | chr4.1:39423143-39423162 | None:intergenic | 50.0% | |
| AAACGCCACAATGGAGAGAG+GGG | - | chr4.1:39426106-39426125 | MS.gene08652:intron | 50.0% | |
| AAGACTGCTGGACCTGCATA+TGG | - | chr4.1:39425700-39425719 | MS.gene08652:intron | 50.0% | |
| CAATCGGATAAACAGCGTGC+TGG | - | chr4.1:39425949-39425968 | MS.gene08652:intron | 50.0% | |
| CATAGGGTCTTAGGACCCTT+AGG | + | chr4.1:39426132-39426151 | None:intergenic | 50.0% | |
| CATTCCTTTGGCTGACAACC+AGG | - | chr4.1:39425107-39425126 | MS.gene08652:CDS | 50.0% | |
| CGAGGTCTTAGGTTCAAAGC+GGG | + | chr4.1:39423125-39423144 | None:intergenic | 50.0% | |
| CTGAAACTGGGCTGTAGGTT+CGG | + | chr4.1:39425780-39425799 | None:intergenic | 50.0% | |
| CTTAGGTTCAAAGCGGGTGA+AGG | + | chr4.1:39423119-39423138 | None:intergenic | 50.0% | |
| GAAACGCCACAATGGAGAGA+GGG | - | chr4.1:39426105-39426124 | MS.gene08652:intron | 50.0% | |
| GCGAGGTCTTAGGTTCAAAG+CGG | + | chr4.1:39423126-39423145 | None:intergenic | 50.0% | |
| GGTGTGTCGGATGAGATTCT+TGG | - | chr4.1:39423869-39423888 | MS.gene08652:intron | 50.0% | |
| TCTGCAGTTCACGCAGTTGA+TGG | + | chr4.1:39422803-39422822 | None:intergenic | 50.0% | |
| TGAAACGCCACAATGGAGAG+AGG | - | chr4.1:39426104-39426123 | MS.gene08652:intron | 50.0% | |
| TGTGGAGTTCGATACAGGTC+TGG | - | chr4.1:39426159-39426178 | MS.gene08652:intron | 50.0% | |
| TTACCACGAGGACGCTTTGT+CGG | + | chr4.1:39425862-39425881 | None:intergenic | 50.0% | |
| ! | CTGATGGTGTGGAACAGGAT+TGG | - | chr4.1:39423936-39423955 | MS.gene08652:intron | 50.0% |
| ! | GGAAACTGATGGTGTGGAAC+AGG | - | chr4.1:39423931-39423950 | MS.gene08652:intron | 50.0% |
| !! | CTGCTCCTGTCTTTGCTGTT+TGG | - | chr4.1:39424088-39424107 | MS.gene08652:intron | 50.0% |
| !! | GTTTGCCACTTGGGTTTTGG+AGG | - | chr4.1:39423051-39423070 | MS.gene08652:CDS | 50.0% |
| !!! | TTGCCACTTGGGTTTTGGAG+GGG | - | chr4.1:39423053-39423072 | MS.gene08652:CDS | 50.0% |
| ACAATGGAGAGAGGGGCCTA+AGG | - | chr4.1:39426113-39426132 | MS.gene08652:intron | 55.0% | |
| AGAGCCTGTCGAAGCTTGAG+AGG | + | chr4.1:39425894-39425913 | None:intergenic | 55.0% | |
| CAATGGAGAGAGGGGCCTAA+GGG | - | chr4.1:39426114-39426133 | MS.gene08652:intron | 55.0% | |
| CGCAATACCCCTCCACGTTA+AGG | + | chr4.1:39424961-39424980 | None:intergenic | 55.0% | |
| CTAGCTGCAGGCCGATATTC+AGG | + | chr4.1:39426195-39426214 | None:intergenic | 55.0% | |
| CTGTCATGCCGCCAATGACT+AGG | - | chr4.1:39425172-39425191 | MS.gene08652:CDS | 55.0% | |
| GCACACAACTGCGAGGTCTT+AGG | + | chr4.1:39423136-39423155 | None:intergenic | 55.0% | |
| GCAGAGCCCAAAAAAGGCCA+AGG | - | chr4.1:39425983-39426002 | MS.gene08652:intron | 55.0% | |
| TACCACGAGGACGCTTTGTC+GGG | + | chr4.1:39425861-39425880 | None:intergenic | 55.0% | |
| TCTCCCCTCCAAAACCCAAG+TGG | + | chr4.1:39423059-39423078 | None:intergenic | 55.0% | |
| TTAGGCCCCTCTCTCCATTG+TGG | + | chr4.1:39426114-39426133 | None:intergenic | 55.0% | |
| ! | GTACCGGCATTTGAGCTACG+CGG | - | chr4.1:39424007-39424026 | MS.gene08652:intron | 55.0% |
| !! | TCAAAGGTTGGGCTAGCTGC+AGG | + | chr4.1:39426207-39426226 | None:intergenic | 55.0% |
| !!! | ACTTGGGTTTTGGAGGGGAG+AGG | - | chr4.1:39423058-39423077 | MS.gene08652:CDS | 55.0% |
| AGCGTCCTCGTGGTAAACGC+CGG | - | chr4.1:39425866-39425885 | MS.gene08652:intron | 60.0% | |
| ATTCGCCAAAGCGCACCCGT+AGG | - | chr4.1:39425450-39425469 | MS.gene08652:intron | 60.0% | |
| GGACGCTTTGTCGGGATCAC+TGG | + | chr4.1:39425853-39425872 | None:intergenic | 60.0% | |
| TCGCCGCGTAGCTCAAATGC+CGG | + | chr4.1:39424013-39424032 | None:intergenic | 60.0% | |
| ! | ATCCCGACAAAGCGTCCTCG+TGG | - | chr4.1:39425856-39425875 | MS.gene08652:intron | 60.0% |
| ! | TGTCGAAGCTTGAGAGGCGC+CGG | + | chr4.1:39425888-39425907 | None:intergenic | 60.0% |
| GCCAAAGCGCACCCGTAGGA+TGG | - | chr4.1:39425454-39425473 | MS.gene08652:intron | 65.0% | |
| GCCATCCTACGGGTGCGCTT+TGG | + | chr4.1:39425458-39425477 | None:intergenic | 65.0% | |
| GGCGCCTCTCAAGCTTCGAC+AGG | - | chr4.1:39425887-39425906 | MS.gene08652:intron | 65.0% | |
| !! | AGGCGCCGGCGTTTACCACG+AGG | + | chr4.1:39425874-39425893 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 39422720 | 39426347 | 39422720 | ID=MS.gene08652 |
| chr4.1 | mRNA | 39422720 | 39426347 | 39422720 | ID=MS.gene08652.t1;Parent=MS.gene08652 |
| chr4.1 | exon | 39426165 | 39426347 | 39426165 | ID=MS.gene08652.t1.exon1;Parent=MS.gene08652.t1 |
| chr4.1 | CDS | 39426165 | 39426347 | 39426165 | ID=cds.MS.gene08652.t1;Parent=MS.gene08652.t1 |
| chr4.1 | exon | 39424989 | 39425246 | 39424989 | ID=MS.gene08652.t1.exon2;Parent=MS.gene08652.t1 |
| chr4.1 | CDS | 39424989 | 39425246 | 39424989 | ID=cds.MS.gene08652.t1;Parent=MS.gene08652.t1 |
| chr4.1 | exon | 39424575 | 39424637 | 39424575 | ID=MS.gene08652.t1.exon3;Parent=MS.gene08652.t1 |
| chr4.1 | CDS | 39424575 | 39424637 | 39424575 | ID=cds.MS.gene08652.t1;Parent=MS.gene08652.t1 |
| chr4.1 | exon | 39422720 | 39423373 | 39422720 | ID=MS.gene08652.t1.exon4;Parent=MS.gene08652.t1 |
| chr4.1 | CDS | 39422720 | 39423373 | 39422720 | ID=cds.MS.gene08652.t1;Parent=MS.gene08652.t1 |
| Gene Sequence |
| Protein sequence |
