AlfalfaGEDB | MS.gene08700

M. sativa cultivar XinJiangDaYe / MS.gene08700

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0008270 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043167 GO:0043169 GO:0043565 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08700.t1	KEH30032.1	95.3	320	15	0	1	320	83	402	3.00E-172	614.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08700.t1	Q6DBP8	34.6	306	164	8	8	302	10	290	3.4e-39	163.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08700.t1	A0A072UK09	95.3	320	15	0	1	320	83	402	2.2e-172	614.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene08700.t1	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene007672	MS.gene08700	PPI
MS.gene028706	MS.gene08700	PPI
MS.gene028707	MS.gene08700	PPI
MS.gene058934	MS.gene08700	PPI
MS.gene08652	MS.gene08700	PPI
MS.gene08700	MS.gene007672	PPI
MS.gene08700	MS.gene08652	PPI
MS.gene31281	MS.gene08700	PPI
MS.gene68594	MS.gene08700	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08700.t1	MTR_4g058910	95.312	320	15	0	1	320	83	402	0.0	601
MS.gene08700.t1	MTR_2g094600	54.717	318	120	7	1	318	8	301	2.29e-102	303
MS.gene08700.t1	MTR_1g094930	39.252	214	101	6	132	316	23	236	1.85e-35	129
MS.gene08700.t1	MTR_1g094930	39.720	214	100	6	132	316	118	331	2.62e-35	130
MS.gene08700.t1	MTR_1g116010	78.462	65	14	0	232	296	164	228	1.21e-33	124
MS.gene08700.t1	MTR_4g071590	72.059	68	19	0	231	298	210	277	3.22e-32	122
MS.gene08700.t1	MTR_4g471590	72.059	68	19	0	231	298	210	277	3.22e-32	122
MS.gene08700.t1	MTR_1g046680	72.222	72	20	0	232	303	172	243	3.26e-32	120
MS.gene08700.t1	MTR_3g117380	69.444	72	22	0	227	298	224	295	1.30e-31	120
MS.gene08700.t1	MTR_5g007600	66.279	86	28	1	213	298	241	325	2.32e-31	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08700.t1	AT1G08010	35.032	314	152	10	8	302	10	290	7.92e-49	165
MS.gene08700.t1	AT1G08010	35.032	314	152	10	8	302	10	290	7.92e-49	165
MS.gene08700.t1	AT1G08010	35.032	314	152	10	8	302	10	290	7.92e-49	165
MS.gene08700.t1	AT1G08000	36.000	300	164	8	8	301	10	287	4.64e-44	153
MS.gene08700.t1	AT1G08000	36.000	300	164	8	8	301	10	287	4.64e-44	153
MS.gene08700.t1	AT2G28340	33.117	308	144	8	5	302	6	261	2.26e-35	130
MS.gene08700.t1	AT3G54810	77.778	72	16	0	227	298	224	295	1.59e-34	128
MS.gene08700.t1	AT3G54810	77.778	72	16	0	227	298	224	295	1.59e-34	128
MS.gene08700.t1	AT3G24050	71.429	70	20	0	229	298	191	260	2.47e-31	119
MS.gene08700.t1	AT4G36240	42.767	159	69	4	138	296	92	228	6.36e-31	117

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Find 67 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCTTGGAAAGACTGC+TGG	0.521813	4.2:-44593084	MS.gene08700:intron
AAACCTTTCAGGAATTCTCT+AGG	0.536952	4.2:-44592446	None:intergenic
AAACGCCACAATGGAGAGAG+GGG	0.674715	4.2:-44592666	MS.gene08700:CDS
AAAGTTGTAATTCTCAACCG+AGG	0.667884	4.2:+44592951	None:intergenic
AAATTCTCACAAGAAGGTCT+TGG	0.447787	4.2:-44592530	MS.gene08700:CDS
AACTCCACAAGCATTGCATA+GGG	0.590903	4.2:+44592627	None:intergenic
AAGACCCTATGCAATGCTTG+TGG	0.595397	4.2:-44592631	MS.gene08700:CDS
AAGACTGCTGGACCTGCATA+TGG	0.501903	4.2:-44593072	MS.gene08700:CDS
ACAAGAAGGTCTTGGAAATC+AGG	0.346966	4.2:-44592522	MS.gene08700:CDS
ACAATGGAGAGAGGGGCCTA+AGG	0.527062	4.2:-44592659	MS.gene08700:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGCTAATTCGTTTGATA+GGG	-	chr4.2:44592881-44592900	MS.gene08700:CDS	30.0%
AAATCTGTCTCAAATTCTCT+TGG	-	chr4.2:44593534-44593553	MS.gene08700:intron	30.0%
AACAATCAGATGCTAATTTC+TGG	+	chr4.2:44594257-44594276	None:intergenic	30.0%
AATCAGGAAAAAGGTTAATC+AGG	-	chr4.2:44594880-44594899	MS.gene08700:CDS	30.0%
CTGAACACAAATCATGATAA+TGG	-	chr4.2:44593376-44593395	MS.gene08700:intron	30.0%
GAGAAATTGTTCACAAGATT+TGG	+	chr4.2:44592666-44592685	None:intergenic	30.0%
TGCTTTCAAAAACTGAAACT+GGG	+	chr4.2:44594406-44594425	None:intergenic	30.0%
TTGCAACATAAAGTCTATGT+AGG	-	chr4.2:44593818-44593837	MS.gene08700:intron	30.0%
AAAGTTGTAATTCTCAACCG+AGG	+	chr4.2:44594438-44594457	None:intergenic	35.0%
AAATTCTCACAAGAAGGTCT+TGG	-	chr4.2:44594856-44594875	MS.gene08700:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	44592447	44594961	44592447	ID=MS.gene08700
chr4.2	mRNA	44592447	44594961	44592447	ID=MS.gene08700.t1;Parent=MS.gene08700
chr4.2	exon	44594716	44594961	44594716	ID=MS.gene08700.t1.exon1;Parent=MS.gene08700.t1
chr4.2	CDS	44594716	44594961	44594716	ID=cds.MS.gene08700.t1;Parent=MS.gene08700.t1
chr4.2	exon	44594302	44594364	44594302	ID=MS.gene08700.t1.exon2;Parent=MS.gene08700.t1
chr4.2	CDS	44594302	44594364	44594302	ID=cds.MS.gene08700.t1;Parent=MS.gene08700.t1
chr4.2	exon	44592447	44593100	44592447	ID=MS.gene08700.t1.exon3;Parent=MS.gene08700.t1
chr4.2	CDS	44592447	44593100	44592447	ID=cds.MS.gene08700.t1;Parent=MS.gene08700.t1

Gene Sequence

>MS.gene08700

ATGAAGAACAGCTGGTTTTTTGACAAGAATTTTAACGGTGTGTCGGATGAGATTCTTGGTGACGTCGTTGAGTTTTTTGATTTTCCACTTGAAGATGTGGAAACTGATGGTGTGGAACAGGATTGGAATGATCAATTCAAACACCTTGAAGAACCATCTCTTGGTGTTTTCTCAGTACCGGCATTTGAGCTACGCGGCGAAACTCAAGACGAGAAACCAAATCTTGTGAACAATTTCTCTGCTGCTGTGAGTTTTCTGCTCCTGTCTTTGCTGTTTGGATGGACGTATTTTTCTACTTAATAATTATATTAATTTGATAAATTAATTATGTGCATGGTTTGAATATGTGAAAAACTAAAATTACATAAATATATCAACATCGAACCACACATTTTTTATTATCAGAGTCCTGTTGTGTATGTTTGGTTGCTTGCAAAGGCTAATTCGTTTGATAGGGTTTATCCTTTTCAACGGGTGTAACTTTCTTCTTAGACGTTTTTAATTGGAGAAGTTTGTATGCTTGCTTTGATGACTATGGCATTTTGTTGGTCAGGATTTTTAGCGGGAATTGAGAATTACTACAATGATGTTGTGCAGGAACTTTCTCATATTGACAGAAGAAATGTTGTGAATTCAAGCTTAAAAGATCGACGAGGACTAGTAAGTGAAAGGGGAGAATGTAATGATTTTAATGTTTAAGTATCTTTTTGACTCGGTTCTTTTTGAAATGTTTTCTAGGCTGTTAGAGATAGATGTGTTATAAAACTTTTTTGGGGATAAGAGAGAAGATTTGTTGAATCACTTAAAGTCGAGTTTAGAAGAACATGAGCAAAATCAAATGCTAAAGTTTCAATTTTCATGCAATTAGTTGATAAACATGATTATAAAATATGCTGATGATATCTTTACTTTTATGATACATTTTGGTTCTGAACACAAATCATGATAATGGTAACACTTACTGAGTAAAAAACTAAAAGCTACGCTCAAAATATGTTCAAAAAAGGACTAACTAGTAATCACACAAATTGTTCGTGTATGATTAATTTTCAGGTATTAGTTTTACAATATGATACTTTGACACTGAAAATCTGTCTCAAATTCTCTTGGTAAATAGTACTCATACCTTAACGTGGAGGGGTATTGCGCTCAGAAAGTGAGAAAGTTCTGGTAACCATGTTTTGAAGTTGTAAGTATTTTAGTTGTGATGAATAGATGGTATTCATGTGTGTGCTTGAAGATGGTTTATGGCTAGGTAACATGGTAATGAATGACATTCCTTTGGCTGACAACCAGGATAAGATCGATCGATGATCACAAATGACAAAATAAGTAGAAACTGTCATGCCGCCAATGACTAGGTTGATTGAGTTGCAACATAAAGTCTATGTAGGCAAGTTTGTGCAGAATCACAAGCTGAAGTTGCAAAAAGATACAAGTAATTTTACTCGCATGCTTTTGGCTCAATATATGATTGATGTTACAGAAACTGATAATATTTTTTTAAAATAAGGGAGGGGAAAAATTATTATATGTTTAGAGACGGGAGAGGCATTTGACCATCATACAGTCTTCAACGGTGATTGAACTCTGTATCACTGGATTACAAAGCTAGGCATTCGCCAAAGCGCACCCGTAGGATGGCATCTGATAATTGAAAAGTATTTATTATAAATTTCCTTTCAAGTGATTTTCTCTGTGGACTGTGGCGTGTATACATGTAAAGTATGGAAGAATTTTAGTGGATTCCTTGAGTTTAATTAAAACATTATGTACTATTGAAAGTTTAATCTTTTCATTTCTGTTGCCAGAAATTAGCATCTGATTGTTTTATATTTTGCGTGTTTTTCAAATAAAACAGCTTGGAAAGACTGCTGGACCTGCATATGGCAAAACTATTCCCATCCAAAATGTCTCCTTCGATGGAACAAATTTACGCGGATGCCGAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGTAGTTATTCCTCGGTTGAGAATTACAACTTTGAATTACCAGTGATCCCGACAAAGCGTCCTCGTGGTAAACGCCGGCGCCTCTCAAGCTTCGACAGGCTCTTCTCAATTCCATTCATACCTCCTTTTCAAAAGCAGCAATCGGATAAACAGCGTGCTGGTAAATCATTATGCAGAGCCCAAAAAAGGCCAAGGAAAGACAATATCTCCCAGCTCTCTAATAGCATTGAGATGAAGAGATCATCGTTAAATGAATCAATTGCTCGTAGAAAATGTACGCATTGTGAGGTAACTGAAACGCCACAATGGAGAGAGGGGCCTAAGGGTCCTAAGACCCTATGCAATGCTTGTGGAGTTCGATACAGGTCTGGTCGCCTATTTCCTGAATATCGGCCTGCAGCTAGCCCAACCTTTGAAGCATCAGTGCACTCAAATTCTCACAAGAAGGTCTTGGAAATCAGGAAAAAGGTTAATCAGGAGACTGTTAAAGGTTCTTCCATGTTGTATTTATCATCAAACCTTTCAGGAATTCTCTAG

Protein sequence

>MS.gene08700.t1

MKNSWFFDKNFNGVSDEILGDVVEFFDFPLEDVETDGVEQDWNDQFKHLEEPSLGVFSVPAFELRGETQDEKPNLVNNFSAAELSHIDRRNVVNSSLKDRRGLLGKTAGPAYGKTIPIQNVSFDGTNLRGCRTYSPVSVFESSSYSSVENYNFELPVIPTKRPRGKRRRLSSFDRLFSIPFIPPFQKQQSDKQRAGKSLCRAQKRPRKDNISQLSNSIEMKRSSLNESIARRKCTHCEVTETPQWREGPKGPKTLCNACGVRYRSGRLFPEYRPAASPTFEASVHSNSHKKVLEIRKKVNQETVKGSSMLYLSSNLSGIL