Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08668.t1 | XP_013455976.1 | 99 | 526 | 5 | 0 | 3 | 528 | 1 | 526 | 4.80E-300 | 1039.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08668.t1 | O82811 | 78.8 | 529 | 109 | 1 | 3 | 528 | 1 | 529 | 3.1e-247 | 855.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08668.t1 | G7IRD1 | 99.0 | 526 | 5 | 0 | 3 | 528 | 1 | 526 | 3.5e-300 | 1039.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050095 | MS.gene08668 | 0.866089 | 3.68E-65 | -1.69E-46 |
| MS.gene050096 | MS.gene08668 | 0.901621 | 2.23E-78 | -1.69E-46 |
| MS.gene053406 | MS.gene08668 | 0.815215 | 1.04E-51 | -1.69E-46 |
| MS.gene055240 | MS.gene08668 | 0.806046 | 9.95E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene08668 | 0.801738 | 7.81E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene08668 | 0.823627 | 1.25E-53 | -1.69E-46 |
| MS.gene059955 | MS.gene08668 | 0.805139 | 1.54E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 132 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATGTTATCATGGGTATTT+TGG | 0.143284 | 4.4:+45514062 | MS.gene08668:CDS |
| GCCGGAGTCGCTTCGGTTTC+AGG | 0.162646 | 4.4:+45513667 | MS.gene08668:CDS |
| CCTTCTTTATGGTTACTCTA+TGG | 0.186150 | 4.4:+45514330 | MS.gene08668:CDS |
| TGCTGCTGGTTGGGGTAATA+TGG | 0.200878 | 4.4:+45513930 | MS.gene08668:CDS |
| ATCAACTGGTAATGCAAATT+TGG | 0.211102 | 4.4:-45513470 | None:intergenic |
| ATGTTTAATAGTAAAATTAT+TGG | 0.221351 | 4.4:+45513892 | MS.gene08668:CDS |
| AAAATTATTGGACTTGTAAA+TGG | 0.231743 | 4.4:+45513904 | MS.gene08668:CDS |
| ATTCATATCAAGAAGATCTT+TGG | 0.235165 | 4.4:+45514916 | MS.gene08668:CDS |
| CATTTGTTTCATGCCAATAT+TGG | 0.240129 | 4.4:+45513860 | MS.gene08668:CDS |
| GTTTGCATCAACCAAGTCTT+AGG | 0.268930 | 4.4:+45515191 | MS.gene08668:CDS |
| GGAATCATTGCTGCATCCTT+TGG | 0.291659 | 4.4:+45514665 | MS.gene08668:CDS |
| CAACAGCTTCAGGTCTTTCA+TGG | 0.291908 | 4.4:+45515023 | MS.gene08668:CDS |
| CACTCAGCTTATTATGCCTT+TGG | 0.295935 | 4.4:+45513963 | MS.gene08668:CDS |
| GTTTATGATTGGTTTCTCTT+TGG | 0.307610 | 4.4:+45513834 | MS.gene08668:CDS |
| AGCTCCATGCATGGAGTAAC+TGG | 0.308320 | 4.4:+45513388 | MS.gene08668:CDS |
| AGATCTTTGGGAATTATATC+AGG | 0.310342 | 4.4:+45514929 | MS.gene08668:CDS |
| AAATGGTACTGCTGCTGGTT+GGG | 0.317688 | 4.4:+45513921 | MS.gene08668:CDS |
| ACATTGTACTCATCCAATAT+TGG | 0.319895 | 4.4:-45513873 | None:intergenic |
| GGAATTATATCAGGTTTAAC+TGG | 0.331122 | 4.4:+45514938 | MS.gene08668:CDS |
| TGAAAAGAGTTTGAAAACTT+TGG | 0.345000 | 4.4:-45513506 | None:intergenic |
| AACATAGTTGCTCGTCCTTT+CGG | 0.345457 | 4.4:+45514695 | MS.gene08668:CDS |
| GGTGCAATTTGTGACCTATT+AGG | 0.354243 | 4.4:+45513715 | MS.gene08668:CDS |
| TTCCAGCTGTGTGTAGCTTT+AGG | 0.354844 | 4.4:-45514646 | None:intergenic |
| GATGTAGCAGCAAGATTATT+CGG | 0.362131 | 4.4:+45514731 | MS.gene08668:CDS |
| CTTCTTTATGGTTACTCTAT+GGG | 0.368267 | 4.4:+45514331 | MS.gene08668:CDS |
| AGAAAGATATCCATGATAAA+TGG | 0.374158 | 4.4:-45513555 | None:intergenic |
| CACCATTAGTCCCAATCATT+CGG | 0.377390 | 4.4:+45513608 | MS.gene08668:CDS |
| GCAGCATGTGGTGCAACATT+TGG | 0.378132 | 4.4:+45514884 | MS.gene08668:CDS |
| TGGTTGGTTGCATGTTATCA+TGG | 0.382144 | 4.4:+45514053 | MS.gene08668:CDS |
| GTGCTACTCCTTTCACTGCT+TGG | 0.383160 | 4.4:+45514010 | MS.gene08668:CDS |
| TTCATATCAAGAAGATCTTT+GGG | 0.385193 | 4.4:+45514917 | MS.gene08668:CDS |
| GCAGGTGGAAACTTTGGTTC+AGG | 0.385832 | 4.4:+45514962 | MS.gene08668:CDS |
| CTGCTGGTTATATAGCAGTT+AGG | 0.391168 | 4.4:+45513812 | MS.gene08668:CDS |
| TAGTGGGTAGGAGTTGTATT+TGG | 0.393817 | 4.4:-45515271 | None:intergenic |
| ACTCCATGCATGGAGCTTCC+AGG | 0.398090 | 4.4:-45513382 | None:intergenic |
| GGTTGGGGTAATATGGGTGG+TGG | 0.398747 | 4.4:+45513937 | MS.gene08668:CDS |
| AACCATAACGTGGACCTAAT+AGG | 0.411808 | 4.4:-45513729 | None:intergenic |
| CCTTGGTGCTTTACAGAAGA+AGG | 0.416127 | 4.4:+45514119 | MS.gene08668:CDS |
| GCTGCTGGTTGGGGTAATAT+GGG | 0.417787 | 4.4:+45513931 | MS.gene08668:CDS |
| TTAAGGTTGTCCCGAATGAT+TGG | 0.420753 | 4.4:-45513619 | None:intergenic |
| GGTATGCTATAACAAATTAC+AGG | 0.434357 | 4.4:+45514293 | MS.gene08668:CDS |
| GTTGGGGTAATATGGGTGGT+GGG | 0.435234 | 4.4:+45513938 | MS.gene08668:CDS |
| ATAGCAGTTAGGTTTATGAT+TGG | 0.436014 | 4.4:+45513823 | MS.gene08668:CDS |
| TGGATGGGTGCAATGATTGT+TGG | 0.437054 | 4.4:+45515043 | MS.gene08668:CDS |
| TATATCAATGGCTGATATTG+AGG | 0.442270 | 4.4:+45513354 | MS.gene08668:CDS |
| AAAGATCTTCTTGATATGAA+TGG | 0.444365 | 4.4:-45514914 | None:intergenic |
| GACCTATTAGGTCCACGTTA+TGG | 0.448846 | 4.4:+45513727 | MS.gene08668:CDS |
| ACTGGTGCAGGTGGAAACTT+TGG | 0.451991 | 4.4:+45514956 | MS.gene08668:CDS |
| GGAAAATGAACAAATGCAAC+AGG | 0.456403 | 4.4:-45515076 | None:intergenic |
| TGAGAACCTTCCATTTATCA+TGG | 0.456413 | 4.4:+45513545 | MS.gene08668:CDS |
| TGCGAATGTCGAGACGAAAC+AGG | 0.457564 | 4.4:-45513581 | None:intergenic |
| TTGGTGCAGTTAGCATAATA+AGG | 0.458274 | 4.4:-45513759 | None:intergenic |
| GCTGATATTGAGGGTTCACC+TGG | 0.463825 | 4.4:+45513364 | MS.gene08668:CDS |
| AGCTTCAGGTCTTTCATGGA+TGG | 0.465615 | 4.4:+45515027 | MS.gene08668:CDS |
| ATATCAGGTTTAACTGGTGC+AGG | 0.466260 | 4.4:+45514944 | MS.gene08668:CDS |
| AGAAAACTCCTCCTAGGGTT+TGG | 0.467221 | 4.4:-45514787 | None:intergenic |
| TTGCTGAGTATTTCTATGAC+AGG | 0.469828 | 4.4:+45514380 | MS.gene08668:CDS |
| ATATGCAGAAAACTCCTCCT+AGG | 0.470665 | 4.4:-45514793 | None:intergenic |
| AACACTATTACACTTCTGAA+TGG | 0.470788 | 4.4:+45515146 | MS.gene08668:CDS |
| TAAGGTTGTCCCGAATGATT+GGG | 0.483873 | 4.4:-45513618 | None:intergenic |
| CTTGTAAATGGTACTGCTGC+TGG | 0.488890 | 4.4:+45513916 | MS.gene08668:CDS |
| AATGGTACTGCTGCTGGTTG+GGG | 0.493227 | 4.4:+45513922 | MS.gene08668:CDS |
| TGGTAACGCCGGAGTCGCTT+CGG | 0.494934 | 4.4:+45513660 | MS.gene08668:CDS |
| TCCCGAATGATTGGGACTAA+TGG | 0.498651 | 4.4:-45513610 | None:intergenic |
| ACCATTAGTCCCAATCATTC+GGG | 0.499028 | 4.4:+45513609 | MS.gene08668:CDS |
| TAAATGGTACTGCTGCTGGT+TGG | 0.504033 | 4.4:+45513920 | MS.gene08668:CDS |
| TCTTCCAGTTACTCCATGCA+TGG | 0.504862 | 4.4:-45513392 | None:intergenic |
| GTGGTGTCAGTTGGAACCAT+TGG | 0.506816 | 4.4:-45513445 | None:intergenic |
| TTGGGGTAATATGGGTGGTG+GGG | 0.507796 | 4.4:+45513939 | MS.gene08668:CDS |
| CCATAGAGTAACCATAAAGA+AGG | 0.511401 | 4.4:-45514330 | None:intergenic |
| AACCTAAAGCTACACACAGC+TGG | 0.512286 | 4.4:+45514644 | MS.gene08668:CDS |
| CTATAACAAATTACAGGACA+TGG | 0.513380 | 4.4:+45514299 | MS.gene08668:CDS |
| GATTTGTGTTCAGAATCAAC+TGG | 0.525048 | 4.4:-45513484 | None:intergenic |
| TCGGCATGCGAGGAAGGCTA+TGG | 0.535742 | 4.4:+45514750 | MS.gene08668:CDS |
| TCATTTGTTGAAAATGCTGC+TGG | 0.536611 | 4.4:+45513796 | MS.gene08668:CDS |
| GATTTACCTGATGGTAACCT+TGG | 0.538623 | 4.4:+45514102 | MS.gene08668:CDS |
| TCCATGATCCTCTTCTCAGT+TGG | 0.543814 | 4.4:+45514854 | MS.gene08668:CDS |
| GATTATTCGGCATGCGAGGA+AGG | 0.544135 | 4.4:+45514744 | MS.gene08668:CDS |
| ATATCAATGGCTGATATTGA+GGG | 0.546989 | 4.4:+45513355 | MS.gene08668:CDS |
| GTCATCAGTTGCTTCACCAA+TGG | 0.548350 | 4.4:+45513429 | MS.gene08668:CDS |
| CATTGCTGCATCCTTTGGAA+TGG | 0.548449 | 4.4:+45514670 | MS.gene08668:CDS |
| TTCTCAGCAAACCTAAGACT+TGG | 0.549078 | 4.4:-45515202 | None:intergenic |
| GGTTGGTTGCATGTTATCAT+GGG | 0.550695 | 4.4:+45514054 | MS.gene08668:CDS |
| GCTTCAGGTCTTTCATGGAT+GGG | 0.552112 | 4.4:+45515028 | MS.gene08668:CDS |
| AATTTGGCTGTGGTGTCAGT+TGG | 0.553421 | 4.4:-45513454 | None:intergenic |
| ACTCAACACAGCTATATCAA+TGG | 0.555728 | 4.4:+45513342 | None:intergenic |
| ATGATAACATGCAACCAACC+AGG | 0.556711 | 4.4:-45514051 | None:intergenic |
| CTTGTGCTCCAACTGAGAAG+AGG | 0.561854 | 4.4:-45514862 | None:intergenic |
| GGCATATAACTTGTACTAGT+GGG | 0.562820 | 4.4:-45515287 | None:intergenic |
| TGGGTAGGAGTTGTATTTGG+TGG | 0.563220 | 4.4:-45515268 | None:intergenic |
| ACCTGAAACCGAAGCGACTC+CGG | 0.567599 | 4.4:-45513668 | None:intergenic |
| AACTATGTTTGCCATTCCAA+AGG | 0.569835 | 4.4:-45514681 | None:intergenic |
| AACCTCACAAAATCCGATGT+TGG | 0.571313 | 4.4:+45513640 | MS.gene08668:CDS |
| CTTGGTGCTTTACAGAAGAA+GGG | 0.571869 | 4.4:+45514120 | MS.gene08668:CDS |
| TCACCTGGAAGCTCCATGCA+TGG | 0.576261 | 4.4:+45513379 | MS.gene08668:CDS |
| GCAATTCTCCAAGCAGTGAA+AGG | 0.578221 | 4.4:-45514018 | None:intergenic |
| GAGAATAGTCGTTCTGAGAG+AGG | 0.578576 | 4.4:+45515220 | MS.gene08668:CDS |
| AATGAAGATGAAGTACAGAA+AGG | 0.578938 | 4.4:+45515169 | MS.gene08668:CDS |
| AATGACATACAAAACACTGT+TGG | 0.582355 | 4.4:-45513778 | None:intergenic |
| AAATGGAAGGTTCTCATGTG+AGG | 0.586590 | 4.4:-45513538 | None:intergenic |
| TTAGGTCAAGATTTACCTGA+TGG | 0.587027 | 4.4:+45514093 | MS.gene08668:CDS |
| TATGAGTTGATTAGAAGAGC+TGG | 0.589543 | 4.4:+45513988 | MS.gene08668:CDS |
| AAAGCACCAAGGTTACCATC+AGG | 0.593630 | 4.4:-45514108 | None:intergenic |
| CATAGAGTAACCATAAAGAA+GGG | 0.603391 | 4.4:-45514329 | None:intergenic |
| ATAGTTGCTCGTCCTTTCGG+AGG | 0.607439 | 4.4:+45514698 | MS.gene08668:CDS |
| ATCATGGATAGTACTGCGAT+CGG | 0.609698 | 4.4:-45514839 | None:intergenic |
| CCTTCTTCTGTAAAGCACCA+AGG | 0.610360 | 4.4:-45514119 | None:intergenic |
| TGGATCTTCCAAACCCTAGG+AGG | 0.611729 | 4.4:+45514779 | MS.gene08668:CDS |
| TCAGGTTTAACTGGTGCAGG+TGG | 0.614618 | 4.4:+45514947 | MS.gene08668:CDS |
| TATAACTTGTACTAGTGGGT+AGG | 0.614728 | 4.4:-45515283 | None:intergenic |
| TCCAACTGAGAAGAGGATCA+TGG | 0.614752 | 4.4:-45514855 | None:intergenic |
| TATGCAGAAAACTCCTCCTA+GGG | 0.614927 | 4.4:-45514792 | None:intergenic |
| AATGGAAGGTTCTCATGTGA+GGG | 0.615898 | 4.4:-45513537 | None:intergenic |
| CTAATCAACTCATACACCAA+AGG | 0.617873 | 4.4:-45513979 | None:intergenic |
| GAGGAAGGCTATGGACACTC+TGG | 0.618172 | 4.4:+45514759 | MS.gene08668:CDS |
| AGATATCCATGATAAATGGA+AGG | 0.625047 | 4.4:-45513551 | None:intergenic |
| TGAAGCAACTGATGACATGA+AGG | 0.627231 | 4.4:-45513422 | None:intergenic |
| GCTGGTTGGGGTAATATGGG+TGG | 0.628336 | 4.4:+45513934 | MS.gene08668:CDS |
| TGCTAAAGACAAGTTCACAA+AGG | 0.634776 | 4.4:+45514149 | MS.gene08668:CDS |
| AAATCCGATGTTGGTAACGC+CGG | 0.634865 | 4.4:+45513649 | MS.gene08668:CDS |
| GCAAGATTATTCGGCATGCG+AGG | 0.636291 | 4.4:+45514740 | MS.gene08668:CDS |
| CTCTGGATCTTCCAAACCCT+AGG | 0.638609 | 4.4:+45514776 | MS.gene08668:CDS |
| TGGTAATGCAAATTTGGCTG+TGG | 0.639028 | 4.4:-45513464 | None:intergenic |
| GACTCCGGCGTTACCAACAT+CGG | 0.646168 | 4.4:-45513653 | None:intergenic |
| TGATAACATGCAACCAACCA+GGG | 0.648113 | 4.4:-45514050 | None:intergenic |
| GTTGGAGCACAAGCAGCATG+TGG | 0.659585 | 4.4:+45514872 | MS.gene08668:CDS |
| CTCAGCAATGACATTGTCAG+TGG | 0.659860 | 4.4:-45514365 | None:intergenic |
| TCTGATGCATATCCTCCGAA+AGG | 0.660618 | 4.4:-45514710 | None:intergenic |
| TTCTGAGAGAGGAAAGCGTG+TGG | 0.674767 | 4.4:+45515231 | MS.gene08668:CDS |
| AGGAAAGCACAACCATAACG+TGG | 0.709978 | 4.4:-45513739 | None:intergenic |
| CAAAGGCATAATAAGCTGAG+TGG | 0.711499 | 4.4:-45513962 | None:intergenic |
| AGGAACATGCTACCCCACTG+TGG | 0.730068 | 4.4:-45515097 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTTAATAGTAAAATTAT+TGG | + | chr4.4:45513892-45513911 | MS.gene08668:CDS | 10.0% |
| !! | CTAATGAATTAATATAAAAC+AGG | + | chr4.4:45514618-45514637 | MS.gene08668:intron | 15.0% |
| !!! | ATTTGATTATGATTTTTTTC+AGG | + | chr4.4:45514264-45514283 | MS.gene08668:intron | 15.0% |
| !!! | CACAATTTAAAATTATAATC+TGG | + | chr4.4:45514524-45514543 | MS.gene08668:intron | 15.0% |
| !!! | CAGATTATAATTTTAAATTG+TGG | - | chr4.4:45514526-45514545 | None:intergenic | 15.0% |
| !! | AAAATTATTGGACTTGTAAA+TGG | + | chr4.4:45513904-45513923 | MS.gene08668:CDS | 20.0% |
| ! | AAAGATCTTCTTGATATGAA+TGG | - | chr4.4:45514917-45514936 | None:intergenic | 25.0% |
| ! | AGAAAGATATCCATGATAAA+TGG | - | chr4.4:45513558-45513577 | None:intergenic | 25.0% |
| ! | ATTCATATCAAGAAGATCTT+TGG | + | chr4.4:45514916-45514935 | MS.gene08668:CDS | 25.0% |
| ! | TCAATTGATTAATTGTGTTG+TGG | - | chr4.4:45514210-45514229 | None:intergenic | 25.0% |
| ! | TCCTTCAAAAAAAAATCTTG+AGG | - | chr4.4:45514441-45514460 | None:intergenic | 25.0% |
| ! | TGAAAAGAGTTTGAAAACTT+TGG | - | chr4.4:45513509-45513528 | None:intergenic | 25.0% |
| ! | TTCATATCAAGAAGATCTTT+GGG | + | chr4.4:45514917-45514936 | MS.gene08668:CDS | 25.0% |
| !! | AGTTTTCAAACTCTTTTCAA+TGG | + | chr4.4:45513510-45513529 | MS.gene08668:CDS | 25.0% |
| !! | TGTAGACATTTAAAATCTTG+AGG | - | chr4.4:45514468-45514487 | None:intergenic | 25.0% |
| !!! | ATGATTTTTTTCAGGTGTTA+TGG | + | chr4.4:45514272-45514291 | MS.gene08668:intron | 25.0% |
| !!! | TCCTCAAGATTTTTTTTTGA+AGG | + | chr4.4:45514437-45514456 | MS.gene08668:intron | 25.0% |
| !!! | TCTTAATTTGTGTCATTGAT+TGG | + | chr4.4:45514182-45514201 | MS.gene08668:intron | 25.0% |
| AACACTATTACACTTCTGAA+TGG | + | chr4.4:45515146-45515165 | MS.gene08668:CDS | 30.0% | |
| AATGAAGATGAAGTACAGAA+AGG | + | chr4.4:45515169-45515188 | MS.gene08668:CDS | 30.0% | |
| AATGACATACAAAACACTGT+TGG | - | chr4.4:45513781-45513800 | None:intergenic | 30.0% | |
| ACATTGTACTCATCCAATAT+TGG | - | chr4.4:45513876-45513895 | None:intergenic | 30.0% | |
| AGATATCCATGATAAATGGA+AGG | - | chr4.4:45513554-45513573 | None:intergenic | 30.0% | |
| ATAGCAGTTAGGTTTATGAT+TGG | + | chr4.4:45513823-45513842 | MS.gene08668:CDS | 30.0% | |
| ATATCAATGGCTGATATTGA+GGG | + | chr4.4:45513355-45513374 | MS.gene08668:CDS | 30.0% | |
| CATAGAGTAACCATAAAGAA+GGG | - | chr4.4:45514332-45514351 | None:intergenic | 30.0% | |
| CATTTGTTTCATGCCAATAT+TGG | + | chr4.4:45513860-45513879 | MS.gene08668:CDS | 30.0% | |
| CTATAACAAATTACAGGACA+TGG | + | chr4.4:45514299-45514318 | MS.gene08668:CDS | 30.0% | |
| CTTCTTTATGGTTACTCTAT+GGG | + | chr4.4:45514331-45514350 | MS.gene08668:CDS | 30.0% | |
| GGAATTATATCAGGTTTAAC+TGG | + | chr4.4:45514938-45514957 | MS.gene08668:CDS | 30.0% | |
| GGTATGCTATAACAAATTAC+AGG | + | chr4.4:45514293-45514312 | MS.gene08668:CDS | 30.0% | |
| TATATCAATGGCTGATATTG+AGG | + | chr4.4:45513354-45513373 | MS.gene08668:CDS | 30.0% | |
| ! | AGATCTTTGGGAATTATATC+AGG | + | chr4.4:45514929-45514948 | MS.gene08668:CDS | 30.0% |
| ! | ATCAACTGGTAATGCAAATT+TGG | - | chr4.4:45513473-45513492 | None:intergenic | 30.0% |
| ! | ATTTGTTCATTTTCCACAGT+GGG | + | chr4.4:45515084-45515103 | MS.gene08668:CDS | 30.0% |
| ! | TCAAAATTTTCAACAGCTTC+AGG | + | chr4.4:45515013-45515032 | MS.gene08668:CDS | 30.0% |
| ! | TCTTCATTGATCTCTTTTGA+AGG | - | chr4.4:45515127-45515146 | None:intergenic | 30.0% |
| !! | AAAGTTTGTTACAGTCTTCT+AGG | - | chr4.4:45514577-45514596 | None:intergenic | 30.0% |
| !! | GTTTATGATTGGTTTCTCTT+TGG | + | chr4.4:45513834-45513853 | MS.gene08668:CDS | 30.0% |
| !! | TTTCAGGTAGTATTTTCTCA+AGG | + | chr4.4:45513683-45513702 | MS.gene08668:CDS | 30.0% |
| !!! | GGTATTTTGGTCTTAACATT+AGG | + | chr4.4:45514075-45514094 | MS.gene08668:CDS | 30.0% |
| AACTATGTTTGCCATTCCAA+AGG | - | chr4.4:45514684-45514703 | None:intergenic | 35.0% | |
| CCATAGAGTAACCATAAAGA+AGG | - | chr4.4:45514333-45514352 | None:intergenic | 35.0% | |
| CCTTCTTTATGGTTACTCTA+TGG | + | chr4.4:45514330-45514349 | MS.gene08668:CDS | 35.0% | |
| CTAATCAACTCATACACCAA+AGG | - | chr4.4:45513982-45514001 | None:intergenic | 35.0% | |
| GATGTAGCAGCAAGATTATT+CGG | + | chr4.4:45514731-45514750 | MS.gene08668:CDS | 35.0% | |
| GATTTGTGTTCAGAATCAAC+TGG | - | chr4.4:45513487-45513506 | None:intergenic | 35.0% | |
| GGAAAATGAACAAATGCAAC+AGG | - | chr4.4:45515079-45515098 | None:intergenic | 35.0% | |
| TGAGAACCTTCCATTTATCA+TGG | + | chr4.4:45513545-45513564 | MS.gene08668:CDS | 35.0% | |
| TGCTAAAGACAAGTTCACAA+AGG | + | chr4.4:45514149-45514168 | MS.gene08668:CDS | 35.0% | |
| TTAAATTGCAACTGCAGTTG+CGG | + | chr4.4:45514499-45514518 | MS.gene08668:intron | 35.0% | |
| TTAGGTCAAGATTTACCTGA+TGG | + | chr4.4:45514093-45514112 | MS.gene08668:CDS | 35.0% | |
| TTGGTGCAGTTAGCATAATA+AGG | - | chr4.4:45513762-45513781 | None:intergenic | 35.0% | |
| ! | ATTTTCTCAAGGCTTGCAAT+GGG | + | chr4.4:45513694-45513713 | MS.gene08668:CDS | 35.0% |
| ! | CATTTGTTCATTTTCCACAG+TGG | + | chr4.4:45515083-45515102 | MS.gene08668:CDS | 35.0% |
| ! | GCATGTTATCATGGGTATTT+TGG | + | chr4.4:45514062-45514081 | MS.gene08668:CDS | 35.0% |
| ! | TATTTTCTCAAGGCTTGCAA+TGG | + | chr4.4:45513693-45513712 | MS.gene08668:CDS | 35.0% |
| ! | TCATTTGTTGAAAATGCTGC+TGG | + | chr4.4:45513796-45513815 | MS.gene08668:CDS | 35.0% |
| ! | TGGATTTTTGCCCTTCTTTA+TGG | + | chr4.4:45514319-45514338 | MS.gene08668:CDS | 35.0% |
| ! | TTGCTGAGTATTTCTATGAC+AGG | + | chr4.4:45514380-45514399 | MS.gene08668:CDS | 35.0% |
| ! | TTTGTTCATTTTCCACAGTG+GGG | + | chr4.4:45515085-45515104 | MS.gene08668:CDS | 35.0% |
| !! | TATGAGTTGATTAGAAGAGC+TGG | + | chr4.4:45513988-45514007 | MS.gene08668:CDS | 35.0% |
| !! | TCATTGATCTCTTTTGAAGG+TGG | - | chr4.4:45515124-45515143 | None:intergenic | 35.0% |
| !!! | AGAATTGCCTTTTTTATCCC+TGG | + | chr4.4:45514033-45514052 | MS.gene08668:CDS | 35.0% |
| AAATGGAAGGTTCTCATGTG+AGG | - | chr4.4:45513541-45513560 | None:intergenic | 40.0% | |
| AACATAGTTGCTCGTCCTTT+CGG | + | chr4.4:45514695-45514714 | MS.gene08668:CDS | 40.0% | |
| AACCATAACGTGGACCTAAT+AGG | - | chr4.4:45513732-45513751 | None:intergenic | 40.0% | |
| AACCTCACAAAATCCGATGT+TGG | + | chr4.4:45513640-45513659 | MS.gene08668:CDS | 40.0% | |
| AATGGAAGGTTCTCATGTGA+GGG | - | chr4.4:45513540-45513559 | None:intergenic | 40.0% | |
| ACCATTAGTCCCAATCATTC+GGG | + | chr4.4:45513609-45513628 | MS.gene08668:CDS | 40.0% | |
| ATATCAGGTTTAACTGGTGC+AGG | + | chr4.4:45514944-45514963 | MS.gene08668:CDS | 40.0% | |
| ATATGCAGAAAACTCCTCCT+AGG | - | chr4.4:45514796-45514815 | None:intergenic | 40.0% | |
| ATCATGGATAGTACTGCGAT+CGG | - | chr4.4:45514842-45514861 | None:intergenic | 40.0% | |
| ATGATAACATGCAACCAACC+AGG | - | chr4.4:45514054-45514073 | None:intergenic | 40.0% | |
| CAACCAACCAGGGATAAAAA+AGG | - | chr4.4:45514043-45514062 | None:intergenic | 40.0% | |
| CACCATTAGTCCCAATCATT+CGG | + | chr4.4:45513608-45513627 | MS.gene08668:CDS | 40.0% | |
| CACTCAGCTTATTATGCCTT+TGG | + | chr4.4:45513963-45513982 | MS.gene08668:CDS | 40.0% | |
| GATTTACCTGATGGTAACCT+TGG | + | chr4.4:45514102-45514121 | MS.gene08668:CDS | 40.0% | |
| GGTGCAATTTGTGACCTATT+AGG | + | chr4.4:45513715-45513734 | MS.gene08668:CDS | 40.0% | |
| GTTTGCATCAACCAAGTCTT+AGG | + | chr4.4:45515191-45515210 | MS.gene08668:CDS | 40.0% | |
| TAAGGTTGTCCCGAATGATT+GGG | - | chr4.4:45513621-45513640 | None:intergenic | 40.0% | |
| TATGCAGAAAACTCCTCCTA+GGG | - | chr4.4:45514795-45514814 | None:intergenic | 40.0% | |
| TGAAGCAACTGATGACATGA+AGG | - | chr4.4:45513425-45513444 | None:intergenic | 40.0% | |
| TGATAACATGCAACCAACCA+GGG | - | chr4.4:45514053-45514072 | None:intergenic | 40.0% | |
| TTAAGGTTGTCCCGAATGAT+TGG | - | chr4.4:45513622-45513641 | None:intergenic | 40.0% | |
| TTCTCAGCAAACCTAAGACT+TGG | - | chr4.4:45515205-45515224 | None:intergenic | 40.0% | |
| ! | CAAAGGCATAATAAGCTGAG+TGG | - | chr4.4:45513965-45513984 | None:intergenic | 40.0% |
| ! | CATCGGATTTTGTGAGGTTA+AGG | - | chr4.4:45513639-45513658 | None:intergenic | 40.0% |
| ! | CTGCTGGTTATATAGCAGTT+AGG | + | chr4.4:45513812-45513831 | MS.gene08668:CDS | 40.0% |
| ! | GGAGTTTTCTGCATATGGTT+AGG | + | chr4.4:45514800-45514819 | MS.gene08668:CDS | 40.0% |
| ! | GGTTGGTTGCATGTTATCAT+GGG | + | chr4.4:45514054-45514073 | MS.gene08668:CDS | 40.0% |
| ! | TACCAACATCGGATTTTGTG+AGG | - | chr4.4:45513645-45513664 | None:intergenic | 40.0% |
| ! | TAGGAGGAGTTTTCTGCATA+TGG | + | chr4.4:45514795-45514814 | MS.gene08668:CDS | 40.0% |
| ! | TAGTGGGTAGGAGTTGTATT+TGG | - | chr4.4:45515274-45515293 | None:intergenic | 40.0% |
| ! | TGGTAATGCAAATTTGGCTG+TGG | - | chr4.4:45513467-45513486 | None:intergenic | 40.0% |
| ! | TGGTTGGTTGCATGTTATCA+TGG | + | chr4.4:45514053-45514072 | MS.gene08668:CDS | 40.0% |
| !! | CTTGGTGCTTTACAGAAGAA+GGG | + | chr4.4:45514120-45514139 | MS.gene08668:CDS | 40.0% |
| !! | TGATCTCTTTTGAAGGTGGA+AGG | - | chr4.4:45515120-45515139 | None:intergenic | 40.0% |
| !!! | TTGCCTTTTTTATCCCTGGT+TGG | + | chr4.4:45514037-45514056 | MS.gene08668:CDS | 40.0% |
| AACCTAAAGCTACACACAGC+TGG | + | chr4.4:45514644-45514663 | MS.gene08668:CDS | 45.0% | |
| AGAAAACTCCTCCTAGGGTT+TGG | - | chr4.4:45514790-45514809 | None:intergenic | 45.0% | |
| AGCTTCAGGTCTTTCATGGA+TGG | + | chr4.4:45515027-45515046 | MS.gene08668:CDS | 45.0% | |
| CAACAGCTTCAGGTCTTTCA+TGG | + | chr4.4:45515023-45515042 | MS.gene08668:CDS | 45.0% | |
| CTCAGCAATGACATTGTCAG+TGG | - | chr4.4:45514368-45514387 | None:intergenic | 45.0% | |
| CTTGTAAATGGTACTGCTGC+TGG | + | chr4.4:45513916-45513935 | MS.gene08668:CDS | 45.0% | |
| GACCTATTAGGTCCACGTTA+TGG | + | chr4.4:45513727-45513746 | MS.gene08668:CDS | 45.0% | |
| GCAATTCTCCAAGCAGTGAA+AGG | - | chr4.4:45514021-45514040 | None:intergenic | 45.0% | |
| GCTTCAGGTCTTTCATGGAT+GGG | + | chr4.4:45515028-45515047 | MS.gene08668:CDS | 45.0% | |
| GGAATCATTGCTGCATCCTT+TGG | + | chr4.4:45514665-45514684 | MS.gene08668:CDS | 45.0% | |
| GTCATCAGTTGCTTCACCAA+TGG | + | chr4.4:45513429-45513448 | MS.gene08668:CDS | 45.0% | |
| TAAATGGTACTGCTGCTGGT+TGG | + | chr4.4:45513920-45513939 | MS.gene08668:CDS | 45.0% | |
| TCCAACTGAGAAGAGGATCA+TGG | - | chr4.4:45514858-45514877 | None:intergenic | 45.0% | |
| TCCATGATCCTCTTCTCAGT+TGG | + | chr4.4:45514854-45514873 | MS.gene08668:CDS | 45.0% | |
| TCCCGAATGATTGGGACTAA+TGG | - | chr4.4:45513613-45513632 | None:intergenic | 45.0% | |
| TCTGATGCATATCCTCCGAA+AGG | - | chr4.4:45514713-45514732 | None:intergenic | 45.0% | |
| TCTTCCAGTTACTCCATGCA+TGG | - | chr4.4:45513395-45513414 | None:intergenic | 45.0% | |
| TGGATGGGTGCAATGATTGT+TGG | + | chr4.4:45515043-45515062 | MS.gene08668:CDS | 45.0% | |
| TGGGTAGGAGTTGTATTTGG+TGG | - | chr4.4:45515271-45515290 | None:intergenic | 45.0% | |
| TTCCAGCTGTGTGTAGCTTT+AGG | - | chr4.4:45514649-45514668 | None:intergenic | 45.0% | |
| ! | AAAGCACCAAGGTTACCATC+AGG | - | chr4.4:45514111-45514130 | None:intergenic | 45.0% |
| ! | AAATGGTACTGCTGCTGGTT+GGG | + | chr4.4:45513921-45513940 | MS.gene08668:CDS | 45.0% |
| ! | AATTTGGCTGTGGTGTCAGT+TGG | - | chr4.4:45513457-45513476 | None:intergenic | 45.0% |
| ! | AGGAAAGCACAACCATAACG+TGG | - | chr4.4:45513742-45513761 | None:intergenic | 45.0% |
| ! | CATTGCTGCATCCTTTGGAA+TGG | + | chr4.4:45514670-45514689 | MS.gene08668:CDS | 45.0% |
| ! | CCTTCTTCTGTAAAGCACCA+AGG | - | chr4.4:45514122-45514141 | None:intergenic | 45.0% |
| !! | AAATCCGATGTTGGTAACGC+CGG | + | chr4.4:45513649-45513668 | MS.gene08668:CDS | 45.0% |
| !! | CCTTGGTGCTTTACAGAAGA+AGG | + | chr4.4:45514119-45514138 | MS.gene08668:CDS | 45.0% |
| !! | GAGAATAGTCGTTCTGAGAG+AGG | + | chr4.4:45515220-45515239 | MS.gene08668:CDS | 45.0% |
| ACTGGTGCAGGTGGAAACTT+TGG | + | chr4.4:45514956-45514975 | MS.gene08668:CDS | 50.0% | |
| AGCTCCATGCATGGAGTAAC+TGG | + | chr4.4:45513388-45513407 | MS.gene08668:CDS | 50.0% | |
| ATAGTTGCTCGTCCTTTCGG+AGG | + | chr4.4:45514698-45514717 | MS.gene08668:CDS | 50.0% | |
| CTCTGGATCTTCCAAACCCT+AGG | + | chr4.4:45514776-45514795 | MS.gene08668:CDS | 50.0% | |
| CTTGTGCTCCAACTGAGAAG+AGG | - | chr4.4:45514865-45514884 | None:intergenic | 50.0% | |
| GATTATTCGGCATGCGAGGA+AGG | + | chr4.4:45514744-45514763 | MS.gene08668:CDS | 50.0% | |
| GCAAGATTATTCGGCATGCG+AGG | + | chr4.4:45514740-45514759 | MS.gene08668:CDS | 50.0% | |
| GCAGCATGTGGTGCAACATT+TGG | + | chr4.4:45514884-45514903 | MS.gene08668:CDS | 50.0% | |
| GCTGATATTGAGGGTTCACC+TGG | + | chr4.4:45513364-45513383 | MS.gene08668:CDS | 50.0% | |
| GTTGGGGTAATATGGGTGGT+GGG | + | chr4.4:45513938-45513957 | MS.gene08668:CDS | 50.0% | |
| TCAGGTTTAACTGGTGCAGG+TGG | + | chr4.4:45514947-45514966 | MS.gene08668:CDS | 50.0% | |
| TGCGAATGTCGAGACGAAAC+AGG | - | chr4.4:45513584-45513603 | None:intergenic | 50.0% | |
| TGGATCTTCCAAACCCTAGG+AGG | + | chr4.4:45514779-45514798 | MS.gene08668:CDS | 50.0% | |
| TTGGGGTAATATGGGTGGTG+GGG | + | chr4.4:45513939-45513958 | MS.gene08668:CDS | 50.0% | |
| ! | AATGGTACTGCTGCTGGTTG+GGG | + | chr4.4:45513922-45513941 | MS.gene08668:CDS | 50.0% |
| ! | GCAGGTGGAAACTTTGGTTC+AGG | + | chr4.4:45514962-45514981 | MS.gene08668:CDS | 50.0% |
| ! | GCTGCTGGTTGGGGTAATAT+GGG | + | chr4.4:45513931-45513950 | MS.gene08668:CDS | 50.0% |
| ! | GTGCTACTCCTTTCACTGCT+TGG | + | chr4.4:45514010-45514029 | MS.gene08668:CDS | 50.0% |
| ! | GTGGTGTCAGTTGGAACCAT+TGG | - | chr4.4:45513448-45513467 | None:intergenic | 50.0% |
| ! | TGCTGCTGGTTGGGGTAATA+TGG | + | chr4.4:45513930-45513949 | MS.gene08668:CDS | 50.0% |
| ! | TTCTGAGAGAGGAAAGCGTG+TGG | + | chr4.4:45515231-45515250 | MS.gene08668:CDS | 50.0% |
| ACCTGAAACCGAAGCGACTC+CGG | - | chr4.4:45513671-45513690 | None:intergenic | 55.0% | |
| ACTCCATGCATGGAGCTTCC+AGG | - | chr4.4:45513385-45513404 | None:intergenic | 55.0% | |
| AGGAACATGCTACCCCACTG+TGG | - | chr4.4:45515100-45515119 | None:intergenic | 55.0% | |
| GACTCCGGCGTTACCAACAT+CGG | - | chr4.4:45513656-45513675 | None:intergenic | 55.0% | |
| GAGGAAGGCTATGGACACTC+TGG | + | chr4.4:45514759-45514778 | MS.gene08668:CDS | 55.0% | |
| GCTGGTTGGGGTAATATGGG+TGG | + | chr4.4:45513934-45513953 | MS.gene08668:CDS | 55.0% | |
| GGTTGGGGTAATATGGGTGG+TGG | + | chr4.4:45513937-45513956 | MS.gene08668:CDS | 55.0% | |
| GTTGGAGCACAAGCAGCATG+TGG | + | chr4.4:45514872-45514891 | MS.gene08668:CDS | 55.0% | |
| TCACCTGGAAGCTCCATGCA+TGG | + | chr4.4:45513379-45513398 | MS.gene08668:CDS | 55.0% | |
| TCGGCATGCGAGGAAGGCTA+TGG | + | chr4.4:45514750-45514769 | MS.gene08668:CDS | 60.0% | |
| ! | TGGTAACGCCGGAGTCGCTT+CGG | + | chr4.4:45513660-45513679 | MS.gene08668:CDS | 60.0% |
| GCCGGAGTCGCTTCGGTTTC+AGG | + | chr4.4:45513667-45513686 | MS.gene08668:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 45513353 | 45515294 | 45513353 | ID=MS.gene08668 |
| chr4.4 | mRNA | 45513353 | 45515294 | 45513353 | ID=MS.gene08668.t1;Parent=MS.gene08668 |
| chr4.4 | exon | 45513353 | 45514170 | 45513353 | ID=MS.gene08668.t1.exon1;Parent=MS.gene08668.t1 |
| chr4.4 | CDS | 45513353 | 45514170 | 45513353 | ID=cds.MS.gene08668.t1;Parent=MS.gene08668.t1 |
| chr4.4 | exon | 45514286 | 45514401 | 45514286 | ID=MS.gene08668.t1.exon2;Parent=MS.gene08668.t1 |
| chr4.4 | CDS | 45514286 | 45514401 | 45514286 | ID=cds.MS.gene08668.t1;Parent=MS.gene08668.t1 |
| chr4.4 | exon | 45514640 | 45515294 | 45514640 | ID=MS.gene08668.t1.exon3;Parent=MS.gene08668.t1 |
| chr4.4 | CDS | 45514640 | 45515294 | 45514640 | ID=cds.MS.gene08668.t1;Parent=MS.gene08668.t1 |
| Gene Sequence |
| Protein sequence |
