Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050096.t1 | XP_013455976.1 | 99.2 | 526 | 4 | 0 | 1 | 526 | 1 | 526 | 2.80E-300 | 1040.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050096.t1 | O82811 | 79.0 | 529 | 108 | 1 | 1 | 526 | 1 | 529 | 1.8e-247 | 856.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050096.t1 | G7IRD1 | 99.2 | 526 | 4 | 0 | 1 | 526 | 1 | 526 | 2.0e-300 | 1040.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene050096 | 0.809839 | 1.55E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene050096 | 0.877074 | 8.41E-69 | -1.69E-46 |
| MS.gene050096 | MS.gene05240 | 0.825856 | 3.73E-54 | -1.69E-46 |
| MS.gene050096 | MS.gene053031 | 0.83036 | 3.07E-55 | -1.69E-46 |
| MS.gene050096 | MS.gene053403 | 0.804153 | 2.48E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene053406 | 0.836995 | 6.75E-57 | -1.69E-46 |
| MS.gene050096 | MS.gene053488 | 0.809429 | 1.90E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene054742 | 0.812402 | 4.32E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene05483 | 0.803252 | 3.81E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene055124 | 0.815275 | 1.00E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene057544 | 0.809135 | 2.20E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene058603 | 0.835947 | 1.25E-56 | -1.69E-46 |
| MS.gene050096 | MS.gene059953 | 0.811385 | 7.19E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene059955 | 0.808802 | 2.59E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene063988 | 0.816439 | 5.53E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene065240 | 0.819796 | 9.62E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene066602 | 0.841115 | 5.78E-58 | -1.69E-46 |
| MS.gene050096 | MS.gene066937 | 0.811287 | 7.55E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene066957 | 0.820662 | 6.09E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene068296 | 0.803563 | 3.28E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene069431 | 0.828131 | 1.07E-54 | -1.69E-46 |
| MS.gene050096 | MS.gene069482 | 0.834897 | 2.30E-56 | -1.69E-46 |
| MS.gene050096 | MS.gene069712 | -0.811325 | 7.41E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene070947 | 0.819222 | 1.30E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene071858 | 0.810016 | 1.42E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene072979 | 0.80771 | 4.43E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene073183 | 0.804094 | 2.55E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene073526 | 0.801937 | 7.11E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene07591 | 0.802494 | 5.46E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene08666 | 0.895234 | 1.16E-75 | -1.69E-46 |
| MS.gene050096 | MS.gene08668 | 0.901621 | 2.23E-78 | -1.69E-46 |
| MS.gene050096 | MS.gene08732 | 0.895484 | 9.18E-76 | -1.69E-46 |
| MS.gene050096 | MS.gene08733 | 0.923851 | 1.54E-89 | -1.69E-46 |
| MS.gene050096 | MS.gene08901 | 0.814037 | 1.89E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene08902 | 0.809637 | 1.72E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene22567 | 0.822926 | 1.82E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene23413 | 0.80284 | 4.63E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene24862 | 0.822326 | 2.52E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene25701 | 0.802817 | 4.69E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene26294 | 0.822746 | 2.01E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene26296 | 0.820829 | 5.58E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene26517 | 0.80968 | 1.68E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene28427 | 0.82304 | 1.72E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene28548 | 0.810299 | 1.23E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene29827 | 0.829177 | 5.96E-55 | -1.69E-46 |
| MS.gene050096 | MS.gene33336 | 0.801456 | 8.93E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene34373 | 0.819901 | 9.10E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene35546 | 0.809289 | 2.04E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene35597 | 0.802782 | 4.76E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene35598 | 0.852255 | 5.21E-61 | -1.69E-46 |
| MS.gene050096 | MS.gene37192 | 0.805679 | 1.19E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene37560 | 0.829548 | 4.84E-55 | -1.69E-46 |
| MS.gene050096 | MS.gene37747 | 0.802189 | 6.31E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene38435 | 0.839322 | 1.70E-57 | -1.69E-46 |
| MS.gene050096 | MS.gene40172 | 0.80595 | 1.04E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene41490 | 0.80459 | 2.01E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene42080 | 0.849788 | 2.58E-60 | -1.69E-46 |
| MS.gene050096 | MS.gene43874 | 0.853032 | 3.12E-61 | -1.69E-46 |
| MS.gene050096 | MS.gene44712 | 0.827216 | 1.77E-54 | -1.69E-46 |
| MS.gene050096 | MS.gene45893 | 0.810399 | 1.17E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene46337 | 0.814987 | 1.16E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene46433 | 0.801436 | 9.01E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene46779 | 0.80069 | 1.28E-48 | -1.69E-46 |
| MS.gene050096 | MS.gene48314 | 0.850447 | 1.69E-60 | -1.69E-46 |
| MS.gene050096 | MS.gene48805 | 0.855176 | 7.52E-62 | -1.69E-46 |
| MS.gene050096 | MS.gene48806 | 0.849089 | 4.04E-60 | -1.69E-46 |
| MS.gene050096 | MS.gene48807 | 0.814476 | 1.51E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene48885 | 0.81725 | 3.64E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene49021 | 0.825376 | 4.85E-54 | -1.69E-46 |
| MS.gene050096 | MS.gene50279 | 0.843031 | 1.80E-58 | -1.69E-46 |
| MS.gene050096 | MS.gene50786 | 0.807207 | 5.66E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene51024 | 0.803763 | 2.98E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene51331 | 0.801861 | 7.37E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene51523 | 0.825621 | 4.24E-54 | -1.69E-46 |
| MS.gene050096 | MS.gene52368 | 0.817028 | 4.08E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene52369 | 0.82895 | 6.76E-55 | -1.69E-46 |
| MS.gene050096 | MS.gene52370 | 0.851296 | 9.73E-61 | -1.69E-46 |
| MS.gene050096 | MS.gene52371 | 0.820277 | 7.47E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene52373 | 0.807309 | 5.38E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene54029 | 0.852762 | 3.73E-61 | -1.69E-46 |
| MS.gene050096 | MS.gene54574 | 0.822536 | 2.25E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene56009 | 0.807993 | 3.85E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene56509 | 0.829639 | 4.60E-55 | -1.69E-46 |
| MS.gene050096 | MS.gene58107 | 0.813366 | 2.65E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene58464 | 0.802735 | 4.87E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene59005 | 0.822698 | 2.06E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene59006 | 0.80632 | 8.71E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene60477 | 0.800894 | 1.16E-48 | -1.69E-46 |
| MS.gene050096 | MS.gene61194 | 0.823426 | 1.39E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene62114 | 0.817676 | 2.91E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene62222 | 0.81022 | 1.28E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene63444 | 0.818152 | 2.28E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene63706 | 0.814662 | 1.37E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene63913 | 0.80562 | 1.22E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene63914 | 0.803652 | 3.15E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene64372 | 0.822867 | 1.88E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene64872 | 0.808485 | 3.03E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene65287 | 0.815168 | 1.06E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene65317 | 0.815634 | 8.36E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene65497 | 0.813694 | 2.25E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene65500 | 0.83022 | 3.32E-55 | -1.69E-46 |
| MS.gene050096 | MS.gene65948 | 0.8311 | 2.02E-55 | -1.69E-46 |
| MS.gene050096 | MS.gene65951 | 0.830645 | 2.61E-55 | -1.69E-46 |
| MS.gene050096 | MS.gene66895 | 0.818761 | 1.66E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene68453 | 0.814042 | 1.88E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene69635 | 0.805177 | 1.51E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene69966 | 0.808594 | 2.87E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene70061 | 0.83718 | 6.05E-57 | -1.69E-46 |
| MS.gene050096 | MS.gene70062 | 0.828887 | 7.00E-55 | -1.69E-46 |
| MS.gene050096 | MS.gene70064 | 0.821529 | 3.85E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene70253 | 0.801363 | 9.33E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene71251 | 0.820134 | 8.05E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene71350 | 0.838013 | 3.70E-57 | -1.69E-46 |
| MS.gene050096 | MS.gene73164 | 0.807441 | 5.05E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene74774 | 0.814874 | 1.23E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene74786 | 0.81186 | 5.67E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene75396 | 0.815836 | 7.54E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene76737 | 0.826324 | 2.89E-54 | -1.69E-46 |
| MS.gene050096 | MS.gene76738 | 0.85749 | 1.58E-62 | -1.69E-46 |
| MS.gene050096 | MS.gene77032 | 0.85032 | 1.83E-60 | -1.69E-46 |
| MS.gene050096 | MS.gene77033 | 0.823902 | 1.08E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene77471 | 0.804905 | 1.73E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene77829 | 0.801629 | 8.23E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene79624 | 0.814873 | 1.23E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene79803 | 0.802535 | 5.36E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene80744 | 0.822337 | 2.50E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene81349 | 0.832207 | 1.08E-55 | -1.69E-46 |
| MS.gene050096 | MS.gene81350 | 0.815584 | 8.58E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene82112 | 0.811169 | 8.01E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene82183 | 0.803253 | 3.81E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene82244 | 0.815405 | 9.40E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene82245 | 0.884632 | 1.62E-71 | -1.69E-46 |
| MS.gene050096 | MS.gene82855 | 0.802966 | 4.37E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene82857 | 0.814225 | 1.72E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene82858 | 0.802316 | 5.94E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene83365 | 0.807142 | 5.84E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene84222 | 0.801444 | 8.98E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene84225 | 0.807244 | 5.56E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene84947 | 0.801465 | 8.89E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene85485 | 0.803218 | 3.87E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene85494 | 0.811472 | 6.88E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene86563 | 0.812218 | 4.74E-51 | -1.69E-46 |
| MS.gene050096 | MS.gene87056 | 0.851322 | 9.57E-61 | -1.69E-46 |
| MS.gene050096 | MS.gene87222 | 0.802225 | 6.21E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene87346 | 0.80285 | 4.61E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene87450 | 0.808399 | 3.16E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene87750 | 0.856185 | 3.82E-62 | -1.69E-46 |
| MS.gene050096 | MS.gene89772 | 0.808551 | 2.93E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene89773 | 0.807637 | 4.59E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene89774 | 0.826533 | 2.58E-54 | -1.69E-46 |
| MS.gene050096 | MS.gene91226 | 0.807187 | 5.71E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene91228 | 0.807614 | 4.64E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene92334 | 0.804181 | 2.44E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene95804 | 0.836628 | 8.37E-57 | -1.69E-46 |
| MS.gene050096 | MS.gene96516 | 0.806043 | 9.96E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene97499 | 0.825609 | 4.27E-54 | -1.69E-46 |
| MS.gene050096 | MS.gene97500 | 0.809269 | 2.06E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene98322 | 0.85089 | 1.27E-60 | -1.69E-46 |
| MS.gene050096 | MS.gene98475 | 0.806627 | 7.50E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene98480 | 0.802509 | 5.42E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene99062 | 0.827497 | 1.51E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08732 | MS.gene050096 | PPI |
| MS.gene007704 | MS.gene050096 | PPI |
| MS.gene067952 | MS.gene050096 | PPI |
| MS.gene056444 | MS.gene050096 | PPI |
| MS.gene08666 | MS.gene050096 | PPI |
| MS.gene050095 | MS.gene050096 | PPI |
| MS.gene97933 | MS.gene050096 | PPI |
| MS.gene007705 | MS.gene050096 | PPI |
| MS.gene050096 | MS.gene008847 | PPI |
| MS.gene08733 | MS.gene050096 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050096.t1 | MTR_4g057890 | 99.240 | 526 | 4 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1070 |
| MS.gene050096.t1 | MTR_4g057865 | 99.049 | 526 | 5 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1069 |
| MS.gene050096.t1 | MTR_8g069775 | 61.554 | 489 | 186 | 2 | 38 | 524 | 18 | 506 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050096.t1 | AT1G08090 | 79.017 | 529 | 108 | 1 | 1 | 526 | 1 | 529 | 0.0 | 881 |
| MS.gene050096.t1 | AT5G60770 | 79.017 | 529 | 105 | 2 | 1 | 526 | 1 | 526 | 0.0 | 877 |
| MS.gene050096.t1 | AT1G08100 | 75.048 | 517 | 126 | 2 | 7 | 521 | 6 | 521 | 0.0 | 818 |
| MS.gene050096.t1 | AT5G60780 | 72.983 | 533 | 136 | 3 | 2 | 526 | 6 | 538 | 0.0 | 793 |
| MS.gene050096.t1 | AT3G45060 | 72.097 | 534 | 136 | 4 | 5 | 526 | 9 | 541 | 0.0 | 780 |
| MS.gene050096.t1 | AT1G12940 | 59.259 | 486 | 194 | 2 | 38 | 522 | 20 | 502 | 0.0 | 605 |
| MS.gene050096.t1 | AT5G14570 | 48.723 | 470 | 219 | 4 | 41 | 493 | 18 | 482 | 8.87e-152 | 443 |
Find 132 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATGTTATCATGGGTATTT+TGG | 0.143284 | 4.1:+39978558 | MS.gene050096:CDS |
| GCCGGAGTCGCTTCGGTTTC+AGG | 0.162646 | 4.1:+39978163 | MS.gene050096:CDS |
| TGCTGCTGGTTGGGGTAATA+TGG | 0.200878 | 4.1:+39978426 | MS.gene050096:CDS |
| ATCAACTGGTAATGCAAATT+TGG | 0.211102 | 4.1:-39977966 | None:intergenic |
| AAAATTATTGGACTTGTTAA+TGG | 0.213969 | 4.1:+39978400 | MS.gene050096:CDS |
| ATGTTTAATAGTAAAATTAT+TGG | 0.217642 | 4.1:+39978388 | MS.gene050096:CDS |
| CATTTGTTTCATGCCAATAT+TGG | 0.240129 | 4.1:+39978356 | MS.gene050096:CDS |
| GTTTGCATCAACCAAGTCTT+AGG | 0.268930 | 4.1:+39979666 | MS.gene050096:CDS |
| ACTGCTTTATGGTTACTCTA+TGG | 0.275641 | 4.1:+39978827 | MS.gene050096:CDS |
| GGAATCATTGCTGCATCCTT+TGG | 0.291659 | 4.1:+39979140 | MS.gene050096:CDS |
| CAACAGCTTCAGGTCTTTCA+TGG | 0.291908 | 4.1:+39979498 | MS.gene050096:CDS |
| CACTCAGCTTATTATGCCTT+TGG | 0.295935 | 4.1:+39978459 | MS.gene050096:CDS |
| GTTTATGATTGGTTTCTCTT+TGG | 0.307610 | 4.1:+39978330 | MS.gene050096:CDS |
| AGCTCCATGCATGGAGTAAC+TGG | 0.308320 | 4.1:+39977884 | MS.gene050096:CDS |
| TAATGGTACTGCTGCTGGTT+GGG | 0.317688 | 4.1:+39978417 | MS.gene050096:CDS |
| GATGTTGCAGCAAGATTATT+CGG | 0.318773 | 4.1:+39979206 | MS.gene050096:CDS |
| GGAATAATATCAGGTTTAAC+TGG | 0.326492 | 4.1:+39979413 | MS.gene050096:CDS |
| TGAAAAGAGTTTGAAAACTT+TGG | 0.345000 | 4.1:-39978002 | None:intergenic |
| CACCATTAGTCCCGATCATT+CGG | 0.347577 | 4.1:+39978104 | MS.gene050096:CDS |
| TTCATATCAAGAAGATCTTT+AGG | 0.352927 | 4.1:+39979392 | MS.gene050096:CDS |
| GGTGCAATTTGTGACCTATT+AGG | 0.354243 | 4.1:+39978211 | MS.gene050096:CDS |
| TTCCAGCTGTGTGTAGCTTT+AGG | 0.354844 | 4.1:-39979121 | None:intergenic |
| ACATAGTACTCATCCAATAT+TGG | 0.362676 | 4.1:-39978369 | None:intergenic |
| AGAAAGATATCCATGATAAA+TGG | 0.374158 | 4.1:-39978051 | None:intergenic |
| AGATCTTTAGGAATAATATC+AGG | 0.377046 | 4.1:+39979404 | MS.gene050096:CDS |
| TGGTTGGTTGCATGTTATCA+TGG | 0.382144 | 4.1:+39978549 | MS.gene050096:CDS |
| GTGCTACTCCTTTCACTGCT+TGG | 0.383160 | 4.1:+39978506 | MS.gene050096:CDS |
| CTGCTGGTTATATAGCAGTT+AGG | 0.391168 | 4.1:+39978308 | MS.gene050096:CDS |
| ACTCCATGCATGGAGCTTCC+AGG | 0.398090 | 4.1:-39977878 | None:intergenic |
| GGTTGGGGTAATATGGGTGG+TGG | 0.398747 | 4.1:+39978433 | MS.gene050096:CDS |
| TAGTGGGTAGGAGTTGTATT+TGG | 0.403469 | 4.1:-39979746 | None:intergenic |
| GCAGGTGGAAACTTTGGTTC+CGG | 0.404321 | 4.1:+39979437 | MS.gene050096:CDS |
| AACCATAACGTGGACCTAAT+AGG | 0.411808 | 4.1:-39978225 | None:intergenic |
| CCTTGGTGCTTTACAGAAGA+AGG | 0.416127 | 4.1:+39978615 | MS.gene050096:CDS |
| GCTGCTGGTTGGGGTAATAT+GGG | 0.417787 | 4.1:+39978427 | MS.gene050096:CDS |
| GCTGCATGTGGTGCAACATT+TGG | 0.420104 | 4.1:+39979359 | MS.gene050096:CDS |
| AACATAGTTGCTCGTCCATT+CGG | 0.426966 | 4.1:+39979170 | MS.gene050096:CDS |
| GGTATGCTATAACAAATTAC+AGG | 0.434357 | 4.1:+39978790 | MS.gene050096:CDS |
| GTTGGGGTAATATGGGTGGT+GGG | 0.435234 | 4.1:+39978434 | MS.gene050096:CDS |
| ATAGCAGTTAGGTTTATGAT+TGG | 0.436014 | 4.1:+39978319 | MS.gene050096:CDS |
| CTGCTTTATGGTTACTCTAT+GGG | 0.436463 | 4.1:+39978828 | MS.gene050096:CDS |
| TGGATGGGTGCAATGATTGT+TGG | 0.437054 | 4.1:+39979518 | MS.gene050096:CDS |
| AAAGATCTTCTTGATATGAA+TGG | 0.442192 | 4.1:-39979389 | None:intergenic |
| TATATCAATGGCTGATATTG+AGG | 0.442270 | 4.1:+39977850 | None:intergenic |
| AAATATCAACTGTGTTAATC+CGG | 0.442980 | 4.1:-39979456 | None:intergenic |
| GACCTATTAGGTCCACGTTA+TGG | 0.448846 | 4.1:+39978223 | MS.gene050096:CDS |
| AATGGTACTGCTGCTGGTTG+GGG | 0.451568 | 4.1:+39978418 | MS.gene050096:CDS |
| ACTGGTGCAGGTGGAAACTT+TGG | 0.451991 | 4.1:+39979431 | MS.gene050096:CDS |
| GGAAAATGAACAAATGCAAC+AGG | 0.456403 | 4.1:-39979551 | None:intergenic |
| TGAGAACCTTCCATTTATCA+TGG | 0.456413 | 4.1:+39978041 | MS.gene050096:CDS |
| TGCGAATGTCGAGACGAAAC+AGG | 0.457564 | 4.1:-39978077 | None:intergenic |
| TTGGTGCAGTTAGCATAATA+AGG | 0.458274 | 4.1:-39978255 | None:intergenic |
| CTTGTTAATGGTACTGCTGC+TGG | 0.461616 | 4.1:+39978412 | MS.gene050096:CDS |
| ATATGCAGAATACTCCTCCT+AGG | 0.462329 | 4.1:-39979268 | None:intergenic |
| AGAATACTCCTCCTAGGGTT+TGG | 0.463158 | 4.1:-39979262 | None:intergenic |
| GCTGATATTGAGGGTTCACC+TGG | 0.463825 | 4.1:+39977860 | MS.gene050096:CDS |
| AGCTTCAGGTCTTTCATGGA+TGG | 0.465615 | 4.1:+39979502 | MS.gene050096:CDS |
| AACACTATTACACTTCTGAA+TGG | 0.470788 | 4.1:+39979621 | MS.gene050096:CDS |
| GGAGTATTCTGCATATGGTT+AGG | 0.475643 | 4.1:+39979275 | MS.gene050096:CDS |
| TAGGAGGAGTATTCTGCATA+TGG | 0.475901 | 4.1:+39979270 | MS.gene050096:CDS |
| TCCCGAATGATCGGGACTAA+TGG | 0.475992 | 4.1:-39978106 | None:intergenic |
| GGTTACCATCAGGTAAATCT+TGG | 0.480850 | 4.1:-39978594 | None:intergenic |
| TGGTAACGCCGGAGTCGCTT+CGG | 0.494934 | 4.1:+39978156 | MS.gene050096:CDS |
| ATATCAGGTTTAACTGGTGC+AGG | 0.496822 | 4.1:+39979419 | MS.gene050096:CDS |
| TTAATGGTACTGCTGCTGGT+TGG | 0.498414 | 4.1:+39978416 | MS.gene050096:CDS |
| TTGCTGAGTATTTCTATGAC+AGG | 0.498846 | 4.1:+39978877 | MS.gene050096:CDS |
| TCTTCCAGTTACTCCATGCA+TGG | 0.504862 | 4.1:-39977888 | None:intergenic |
| GTGGTGTCAGTTGGAACCAT+TGG | 0.506816 | 4.1:-39977941 | None:intergenic |
| TTGGGGTAATATGGGTGGTG+GGG | 0.507796 | 4.1:+39978435 | MS.gene050096:CDS |
| AACCTAAAGCTACACACAGC+TGG | 0.512286 | 4.1:+39979119 | MS.gene050096:CDS |
| CTATAACAAATTACAGGACA+TGG | 0.513380 | 4.1:+39978796 | MS.gene050096:CDS |
| TTAAGGTTGTCCCGAATGAT+CGG | 0.520419 | 4.1:-39978115 | None:intergenic |
| ACCATTAGTCCCGATCATTC+GGG | 0.520929 | 4.1:+39978105 | MS.gene050096:CDS |
| GATTTGTGTTCAGAATCAAC+TGG | 0.525048 | 4.1:-39977980 | None:intergenic |
| TAAGGTTGTCCCGAATGATC+GGG | 0.526814 | 4.1:-39978114 | None:intergenic |
| TCGGCATGCGAGGAAGGCTA+TGG | 0.535742 | 4.1:+39979225 | MS.gene050096:CDS |
| TCATTTGTTGAAAATGCTGC+TGG | 0.536611 | 4.1:+39978292 | MS.gene050096:CDS |
| GATTTACCTGATGGTAACCT+TGG | 0.538623 | 4.1:+39978598 | MS.gene050096:CDS |
| TCCATGATCCTCTTCTCAGT+TGG | 0.543814 | 4.1:+39979329 | MS.gene050096:CDS |
| GATTATTCGGCATGCGAGGA+AGG | 0.544135 | 4.1:+39979219 | MS.gene050096:CDS |
| ATATCAATGGCTGATATTGA+GGG | 0.546989 | 4.1:+39977851 | None:intergenic |
| GTCATCAGTTGCTTCACCAA+TGG | 0.548350 | 4.1:+39977925 | MS.gene050096:CDS |
| CATTGCTGCATCCTTTGGAA+TGG | 0.548449 | 4.1:+39979145 | MS.gene050096:CDS |
| TTCTCAGCAAACCTAAGACT+TGG | 0.549078 | 4.1:-39979677 | None:intergenic |
| GGTTGGTTGCATGTTATCAT+GGG | 0.550695 | 4.1:+39978550 | MS.gene050096:CDS |
| GCTTCAGGTCTTTCATGGAT+GGG | 0.552112 | 4.1:+39979503 | MS.gene050096:CDS |
| AATTTGGCTGTGGTGTCAGT+TGG | 0.553421 | 4.1:-39977950 | None:intergenic |
| ATGATAACATGCAACCAACC+AGG | 0.556711 | 4.1:-39978547 | None:intergenic |
| CTTGTGCTCCAACTGAGAAG+AGG | 0.561854 | 4.1:-39979337 | None:intergenic |
| TGGGTAGGAGTTGTATTTGG+TGG | 0.563220 | 4.1:-39979743 | None:intergenic |
| ACCTGAAACCGAAGCGACTC+CGG | 0.567599 | 4.1:-39978164 | None:intergenic |
| AACTATGTTTGCCATTCCAA+AGG | 0.569835 | 4.1:-39979156 | None:intergenic |
| AACCTCACAAAATCCGATGT+TGG | 0.571313 | 4.1:+39978136 | MS.gene050096:CDS |
| CTTGGTGCTTTACAGAAGAA+GGG | 0.571869 | 4.1:+39978616 | MS.gene050096:CDS |
| GAGGAAGGCTATGGACACTT+TGG | 0.574369 | 4.1:+39979234 | MS.gene050096:CDS |
| TCACCTGGAAGCTCCATGCA+TGG | 0.576261 | 4.1:+39977875 | MS.gene050096:CDS |
| GCAATTCTCCAAGCAGTGAA+AGG | 0.578221 | 4.1:-39978514 | None:intergenic |
| GAGAATAGTCGTTCTGAGAG+AGG | 0.578576 | 4.1:+39979695 | MS.gene050096:CDS |
| AATGAAGATGAAGTACAGAA+AGG | 0.578938 | 4.1:+39979644 | MS.gene050096:CDS |
| AATGACATACAAAACACTGT+TGG | 0.582355 | 4.1:-39978274 | None:intergenic |
| AAATGGAAGGTTCTCATGTG+AGG | 0.586590 | 4.1:-39978034 | None:intergenic |
| TGGATCTTCCAAACCCTAGG+AGG | 0.586891 | 4.1:+39979254 | MS.gene050096:CDS |
| TATGAGTTGATTAGAAGAGC+TGG | 0.589543 | 4.1:+39978484 | MS.gene050096:CDS |
| CTTTGGATCTTCCAAACCCT+AGG | 0.590786 | 4.1:+39979251 | MS.gene050096:CDS |
| AAAGCACCAAGGTTACCATC+AGG | 0.593630 | 4.1:-39978604 | None:intergenic |
| TATGCAGAATACTCCTCCTA+GGG | 0.594126 | 4.1:-39979267 | None:intergenic |
| TTAGGCCAAGATTTACCTGA+TGG | 0.597509 | 4.1:+39978589 | MS.gene050096:CDS |
| TCTGATGCATATCCGCCGAA+TGG | 0.605405 | 4.1:-39979185 | None:intergenic |
| TCAGGTTTAACTGGTGCAGG+TGG | 0.608725 | 4.1:+39979422 | MS.gene050096:CDS |
| ATCATGGATAGTACTGCGAT+CGG | 0.609698 | 4.1:-39979314 | None:intergenic |
| CATAACTTGCACTAGTGGGT+AGG | 0.609852 | 4.1:-39979758 | None:intergenic |
| CCTTCTTCTGTAAAGCACCA+AGG | 0.610360 | 4.1:-39978615 | None:intergenic |
| ATAGTTGCTCGTCCATTCGG+CGG | 0.613192 | 4.1:+39979173 | MS.gene050096:CDS |
| TCCAACTGAGAAGAGGATCA+TGG | 0.614752 | 4.1:-39979330 | None:intergenic |
| AATGGAAGGTTCTCATGTGA+GGG | 0.615898 | 4.1:-39978033 | None:intergenic |
| CTAATCAACTCATACACCAA+AGG | 0.617873 | 4.1:-39978475 | None:intergenic |
| AGATATCCATGATAAATGGA+AGG | 0.625047 | 4.1:-39978047 | None:intergenic |
| TGAAGCAACTGATGACATGA+AGG | 0.627231 | 4.1:-39977918 | None:intergenic |
| GCTGGTTGGGGTAATATGGG+TGG | 0.628336 | 4.1:+39978430 | MS.gene050096:CDS |
| GGGGCATAACTTGCACTAGT+GGG | 0.634156 | 4.1:-39979762 | None:intergenic |
| AAATCCGATGTTGGTAACGC+CGG | 0.634865 | 4.1:+39978145 | MS.gene050096:CDS |
| TGCAAAAGACAAGTTCACAA+AGG | 0.635923 | 4.1:+39978645 | MS.gene050096:CDS |
| GCAAGATTATTCGGCATGCG+AGG | 0.636291 | 4.1:+39979215 | MS.gene050096:CDS |
| TGGTAATGCAAATTTGGCTG+TGG | 0.639028 | 4.1:-39977960 | None:intergenic |
| GACTCCGGCGTTACCAACAT+CGG | 0.646168 | 4.1:-39978149 | None:intergenic |
| CTCAGCAATGACATTGTCAG+TGG | 0.646298 | 4.1:-39978862 | None:intergenic |
| TGATAACATGCAACCAACCA+GGG | 0.648113 | 4.1:-39978546 | None:intergenic |
| TTCTGAGAGAGGAAAGCGTG+TGG | 0.674767 | 4.1:+39979706 | MS.gene050096:CDS |
| GTTGGAGCACAAGCTGCATG+TGG | 0.687636 | 4.1:+39979347 | MS.gene050096:CDS |
| AGGAAAGCACAACCATAACG+TGG | 0.709978 | 4.1:-39978235 | None:intergenic |
| CAAAGGCATAATAAGCTGAG+TGG | 0.711499 | 4.1:-39978458 | None:intergenic |
| AGAAACATGCTACCCCACTG+TGG | 0.723247 | 4.1:-39979572 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTTAATAGTAAAATTAT+TGG | + | chr4.1:39978388-39978407 | MS.gene050096:CDS | 10.0% |
| !!! | CAATTTTTTTTTTAAAACCT+AGG | + | chr4.1:39979031-39979050 | MS.gene050096:intron | 15.0% |
| !! | AAAAAATTGTGAGTCTAATT+CGG | - | chr4.1:39979020-39979039 | None:intergenic | 20.0% |
| !! | CTAATAAATGGATATAAAAC+AGG | + | chr4.1:39979093-39979112 | MS.gene050096:intron | 20.0% |
| !! | TCTAACAAATCTCTAATAAA+TGG | + | chr4.1:39979081-39979100 | MS.gene050096:intron | 20.0% |
| !!! | AAAATTATTGGACTTGTTAA+TGG | + | chr4.1:39978400-39978419 | MS.gene050096:CDS | 20.0% |
| !!! | TTTGATTATGATTTTCTTTC+AGG | + | chr4.1:39978761-39978780 | MS.gene050096:intron | 20.0% |
| ! | AAAGATCTTCTTGATATGAA+TGG | - | chr4.1:39979392-39979411 | None:intergenic | 25.0% |
| ! | AAATATCAACTGTGTTAATC+CGG | - | chr4.1:39979459-39979478 | None:intergenic | 25.0% |
| ! | AGAAAGATATCCATGATAAA+TGG | - | chr4.1:39978054-39978073 | None:intergenic | 25.0% |
| ! | TCAATTGATTAATTGTGTTG+TGG | - | chr4.1:39978706-39978725 | None:intergenic | 25.0% |
| ! | TGAAAAGAGTTTGAAAACTT+TGG | - | chr4.1:39978005-39978024 | None:intergenic | 25.0% |
| ! | TGTAGATATATACAATCTTG+AGG | - | chr4.1:39978942-39978961 | None:intergenic | 25.0% |
| ! | TTCATATCAAGAAGATCTTT+AGG | + | chr4.1:39979392-39979411 | MS.gene050096:CDS | 25.0% |
| !! | AGATCTTTAGGAATAATATC+AGG | + | chr4.1:39979404-39979423 | MS.gene050096:CDS | 25.0% |
| !! | AGTTTTCAAACTCTTTTCAA+TGG | + | chr4.1:39978006-39978025 | MS.gene050096:CDS | 25.0% |
| !! | CGGATCATAATTTTAAATTG+TGG | - | chr4.1:39979000-39979019 | None:intergenic | 25.0% |
| !!! | TCTTAATTTGTGTCATTGAT+TGG | + | chr4.1:39978678-39978697 | MS.gene050096:intron | 25.0% |
| AACACTATTACACTTCTGAA+TGG | + | chr4.1:39979621-39979640 | MS.gene050096:CDS | 30.0% | |
| AATGAAGATGAAGTACAGAA+AGG | + | chr4.1:39979644-39979663 | MS.gene050096:CDS | 30.0% | |
| AATGACATACAAAACACTGT+TGG | - | chr4.1:39978277-39978296 | None:intergenic | 30.0% | |
| ACATAGTACTCATCCAATAT+TGG | - | chr4.1:39978372-39978391 | None:intergenic | 30.0% | |
| AGATATCCATGATAAATGGA+AGG | - | chr4.1:39978050-39978069 | None:intergenic | 30.0% | |
| ATAGCAGTTAGGTTTATGAT+TGG | + | chr4.1:39978319-39978338 | MS.gene050096:CDS | 30.0% | |
| CATTTGTTTCATGCCAATAT+TGG | + | chr4.1:39978356-39978375 | MS.gene050096:CDS | 30.0% | |
| CTATAACAAATTACAGGACA+TGG | + | chr4.1:39978796-39978815 | MS.gene050096:CDS | 30.0% | |
| GGAATAATATCAGGTTTAAC+TGG | + | chr4.1:39979413-39979432 | MS.gene050096:CDS | 30.0% | |
| GGTATGCTATAACAAATTAC+AGG | + | chr4.1:39978790-39978809 | MS.gene050096:CDS | 30.0% | |
| TTAAATTACAACTGCAGTTG+CGG | + | chr4.1:39978973-39978992 | MS.gene050096:intron | 30.0% | |
| ! | ATCAACTGGTAATGCAAATT+TGG | - | chr4.1:39977969-39977988 | None:intergenic | 30.0% |
| ! | ATTTGTTCATTTTCCACAGT+GGG | + | chr4.1:39979559-39979578 | MS.gene050096:CDS | 30.0% |
| ! | TCAAAATTTTCAACAGCTTC+AGG | + | chr4.1:39979488-39979507 | MS.gene050096:CDS | 30.0% |
| ! | TCTTCATTGATCTCTTTTGA+AGG | - | chr4.1:39979602-39979621 | None:intergenic | 30.0% |
| !! | GTTTATGATTGGTTTCTCTT+TGG | + | chr4.1:39978330-39978349 | MS.gene050096:CDS | 30.0% |
| !! | TGATTTTCTTTCAGGTGTTA+TGG | + | chr4.1:39978769-39978788 | MS.gene050096:intron | 30.0% |
| !! | TTTCAGGTAGTATTTTCTCA+AGG | + | chr4.1:39978179-39978198 | MS.gene050096:CDS | 30.0% |
| !!! | GGTATTTTGGTCTTAACATT+AGG | + | chr4.1:39978571-39978590 | MS.gene050096:CDS | 30.0% |
| AACTATGTTTGCCATTCCAA+AGG | - | chr4.1:39979159-39979178 | None:intergenic | 35.0% | |
| AATGTTCGTTACAATCTCCT+AGG | - | chr4.1:39979051-39979070 | None:intergenic | 35.0% | |
| ACTGCTTTATGGTTACTCTA+TGG | + | chr4.1:39978827-39978846 | MS.gene050096:CDS | 35.0% | |
| CTAATCAACTCATACACCAA+AGG | - | chr4.1:39978478-39978497 | None:intergenic | 35.0% | |
| CTGCTTTATGGTTACTCTAT+GGG | + | chr4.1:39978828-39978847 | MS.gene050096:CDS | 35.0% | |
| GATGTTGCAGCAAGATTATT+CGG | + | chr4.1:39979206-39979225 | MS.gene050096:CDS | 35.0% | |
| GATTTGTGTTCAGAATCAAC+TGG | - | chr4.1:39977983-39978002 | None:intergenic | 35.0% | |
| GGAAAATGAACAAATGCAAC+AGG | - | chr4.1:39979554-39979573 | None:intergenic | 35.0% | |
| TGAGAACCTTCCATTTATCA+TGG | + | chr4.1:39978041-39978060 | MS.gene050096:CDS | 35.0% | |
| TGCAAAAGACAAGTTCACAA+AGG | + | chr4.1:39978645-39978664 | MS.gene050096:CDS | 35.0% | |
| TTGGTGCAGTTAGCATAATA+AGG | - | chr4.1:39978258-39978277 | None:intergenic | 35.0% | |
| ! | ATTTTCTCAAGGCTTGCAAT+GGG | + | chr4.1:39978190-39978209 | MS.gene050096:CDS | 35.0% |
| ! | CATTTGTTCATTTTCCACAG+TGG | + | chr4.1:39979558-39979577 | MS.gene050096:CDS | 35.0% |
| ! | GCATGTTATCATGGGTATTT+TGG | + | chr4.1:39978558-39978577 | MS.gene050096:CDS | 35.0% |
| ! | TATTTTCTCAAGGCTTGCAA+TGG | + | chr4.1:39978189-39978208 | MS.gene050096:CDS | 35.0% |
| ! | TCATTTGTTGAAAATGCTGC+TGG | + | chr4.1:39978292-39978311 | MS.gene050096:CDS | 35.0% |
| ! | TGGATTTTTGCACTGCTTTA+TGG | + | chr4.1:39978816-39978835 | MS.gene050096:CDS | 35.0% |
| ! | TTGCTGAGTATTTCTATGAC+AGG | + | chr4.1:39978877-39978896 | MS.gene050096:CDS | 35.0% |
| ! | TTTGTTCATTTTCCACAGTG+GGG | + | chr4.1:39979560-39979579 | MS.gene050096:CDS | 35.0% |
| !! | TATGAGTTGATTAGAAGAGC+TGG | + | chr4.1:39978484-39978503 | MS.gene050096:CDS | 35.0% |
| !! | TCATTGATCTCTTTTGAAGG+TGG | - | chr4.1:39979599-39979618 | None:intergenic | 35.0% |
| !!! | AGAATTGCCTTTTTTATCCC+TGG | + | chr4.1:39978529-39978548 | MS.gene050096:CDS | 35.0% |
| AAATGGAAGGTTCTCATGTG+AGG | - | chr4.1:39978037-39978056 | None:intergenic | 40.0% | |
| AACATAGTTGCTCGTCCATT+CGG | + | chr4.1:39979170-39979189 | MS.gene050096:CDS | 40.0% | |
| AACCATAACGTGGACCTAAT+AGG | - | chr4.1:39978228-39978247 | None:intergenic | 40.0% | |
| AACCTCACAAAATCCGATGT+TGG | + | chr4.1:39978136-39978155 | MS.gene050096:CDS | 40.0% | |
| AATGGAAGGTTCTCATGTGA+GGG | - | chr4.1:39978036-39978055 | None:intergenic | 40.0% | |
| ATATCAGGTTTAACTGGTGC+AGG | + | chr4.1:39979419-39979438 | MS.gene050096:CDS | 40.0% | |
| ATATGCAGAATACTCCTCCT+AGG | - | chr4.1:39979271-39979290 | None:intergenic | 40.0% | |
| ATCATGGATAGTACTGCGAT+CGG | - | chr4.1:39979317-39979336 | None:intergenic | 40.0% | |
| ATGATAACATGCAACCAACC+AGG | - | chr4.1:39978550-39978569 | None:intergenic | 40.0% | |
| CAACCAACCAGGGATAAAAA+AGG | - | chr4.1:39978539-39978558 | None:intergenic | 40.0% | |
| CACTCAGCTTATTATGCCTT+TGG | + | chr4.1:39978459-39978478 | MS.gene050096:CDS | 40.0% | |
| GATTTACCTGATGGTAACCT+TGG | + | chr4.1:39978598-39978617 | MS.gene050096:CDS | 40.0% | |
| GGTGCAATTTGTGACCTATT+AGG | + | chr4.1:39978211-39978230 | MS.gene050096:CDS | 40.0% | |
| GGTTACCATCAGGTAAATCT+TGG | - | chr4.1:39978597-39978616 | None:intergenic | 40.0% | |
| GTTTGCATCAACCAAGTCTT+AGG | + | chr4.1:39979666-39979685 | MS.gene050096:CDS | 40.0% | |
| TATGCAGAATACTCCTCCTA+GGG | - | chr4.1:39979270-39979289 | None:intergenic | 40.0% | |
| TGAAGCAACTGATGACATGA+AGG | - | chr4.1:39977921-39977940 | None:intergenic | 40.0% | |
| TGATAACATGCAACCAACCA+GGG | - | chr4.1:39978549-39978568 | None:intergenic | 40.0% | |
| TTAAGGTTGTCCCGAATGAT+CGG | - | chr4.1:39978118-39978137 | None:intergenic | 40.0% | |
| TTAGGCCAAGATTTACCTGA+TGG | + | chr4.1:39978589-39978608 | MS.gene050096:CDS | 40.0% | |
| TTCTCAGCAAACCTAAGACT+TGG | - | chr4.1:39979680-39979699 | None:intergenic | 40.0% | |
| ! | CAAAGGCATAATAAGCTGAG+TGG | - | chr4.1:39978461-39978480 | None:intergenic | 40.0% |
| ! | CATCGGATTTTGTGAGGTTA+AGG | - | chr4.1:39978135-39978154 | None:intergenic | 40.0% |
| ! | CTGCTGGTTATATAGCAGTT+AGG | + | chr4.1:39978308-39978327 | MS.gene050096:CDS | 40.0% |
| ! | GGAGTATTCTGCATATGGTT+AGG | + | chr4.1:39979275-39979294 | MS.gene050096:CDS | 40.0% |
| ! | GGTTGGTTGCATGTTATCAT+GGG | + | chr4.1:39978550-39978569 | MS.gene050096:CDS | 40.0% |
| ! | TACCAACATCGGATTTTGTG+AGG | - | chr4.1:39978141-39978160 | None:intergenic | 40.0% |
| ! | TAGTGGGTAGGAGTTGTATT+TGG | - | chr4.1:39979749-39979768 | None:intergenic | 40.0% |
| ! | TGGTAATGCAAATTTGGCTG+TGG | - | chr4.1:39977963-39977982 | None:intergenic | 40.0% |
| ! | TGGTTGGTTGCATGTTATCA+TGG | + | chr4.1:39978549-39978568 | MS.gene050096:CDS | 40.0% |
| !! | CTTGGTGCTTTACAGAAGAA+GGG | + | chr4.1:39978616-39978635 | MS.gene050096:CDS | 40.0% |
| !! | TAGGAGGAGTATTCTGCATA+TGG | + | chr4.1:39979270-39979289 | MS.gene050096:CDS | 40.0% |
| !!! | TTGCCTTTTTTATCCCTGGT+TGG | + | chr4.1:39978533-39978552 | MS.gene050096:CDS | 40.0% |
| AACCTAAAGCTACACACAGC+TGG | + | chr4.1:39979119-39979138 | MS.gene050096:CDS | 45.0% | |
| ACCATTAGTCCCGATCATTC+GGG | + | chr4.1:39978105-39978124 | MS.gene050096:CDS | 45.0% | |
| AGAATACTCCTCCTAGGGTT+TGG | - | chr4.1:39979265-39979284 | None:intergenic | 45.0% | |
| AGCTTCAGGTCTTTCATGGA+TGG | + | chr4.1:39979502-39979521 | MS.gene050096:CDS | 45.0% | |
| CAACAGCTTCAGGTCTTTCA+TGG | + | chr4.1:39979498-39979517 | MS.gene050096:CDS | 45.0% | |
| CACCATTAGTCCCGATCATT+CGG | + | chr4.1:39978104-39978123 | MS.gene050096:CDS | 45.0% | |
| CTCAGCAATGACATTGTCAG+TGG | - | chr4.1:39978865-39978884 | None:intergenic | 45.0% | |
| CTTGTTAATGGTACTGCTGC+TGG | + | chr4.1:39978412-39978431 | MS.gene050096:CDS | 45.0% | |
| CTTTGGATCTTCCAAACCCT+AGG | + | chr4.1:39979251-39979270 | MS.gene050096:CDS | 45.0% | |
| GACCTATTAGGTCCACGTTA+TGG | + | chr4.1:39978223-39978242 | MS.gene050096:CDS | 45.0% | |
| GCAATTCTCCAAGCAGTGAA+AGG | - | chr4.1:39978517-39978536 | None:intergenic | 45.0% | |
| GCTTCAGGTCTTTCATGGAT+GGG | + | chr4.1:39979503-39979522 | MS.gene050096:CDS | 45.0% | |
| GGAATCATTGCTGCATCCTT+TGG | + | chr4.1:39979140-39979159 | MS.gene050096:CDS | 45.0% | |
| GTCATCAGTTGCTTCACCAA+TGG | + | chr4.1:39977925-39977944 | MS.gene050096:CDS | 45.0% | |
| TAAGGTTGTCCCGAATGATC+GGG | - | chr4.1:39978117-39978136 | None:intergenic | 45.0% | |
| TCCAACTGAGAAGAGGATCA+TGG | - | chr4.1:39979333-39979352 | None:intergenic | 45.0% | |
| TCCATGATCCTCTTCTCAGT+TGG | + | chr4.1:39979329-39979348 | MS.gene050096:CDS | 45.0% | |
| TCTTCCAGTTACTCCATGCA+TGG | - | chr4.1:39977891-39977910 | None:intergenic | 45.0% | |
| TGGATGGGTGCAATGATTGT+TGG | + | chr4.1:39979518-39979537 | MS.gene050096:CDS | 45.0% | |
| TGGGTAGGAGTTGTATTTGG+TGG | - | chr4.1:39979746-39979765 | None:intergenic | 45.0% | |
| TTAATGGTACTGCTGCTGGT+TGG | + | chr4.1:39978416-39978435 | MS.gene050096:CDS | 45.0% | |
| TTCCAGCTGTGTGTAGCTTT+AGG | - | chr4.1:39979124-39979143 | None:intergenic | 45.0% | |
| ! | AAAGCACCAAGGTTACCATC+AGG | - | chr4.1:39978607-39978626 | None:intergenic | 45.0% |
| ! | AATTTGGCTGTGGTGTCAGT+TGG | - | chr4.1:39977953-39977972 | None:intergenic | 45.0% |
| ! | AGGAAAGCACAACCATAACG+TGG | - | chr4.1:39978238-39978257 | None:intergenic | 45.0% |
| ! | CATTGCTGCATCCTTTGGAA+TGG | + | chr4.1:39979145-39979164 | MS.gene050096:CDS | 45.0% |
| ! | CCTTCTTCTGTAAAGCACCA+AGG | - | chr4.1:39978618-39978637 | None:intergenic | 45.0% |
| ! | TAATGGTACTGCTGCTGGTT+GGG | + | chr4.1:39978417-39978436 | MS.gene050096:CDS | 45.0% |
| !! | AAATCCGATGTTGGTAACGC+CGG | + | chr4.1:39978145-39978164 | MS.gene050096:CDS | 45.0% |
| !! | CCTTGGTGCTTTACAGAAGA+AGG | + | chr4.1:39978615-39978634 | MS.gene050096:CDS | 45.0% |
| !! | GAGAATAGTCGTTCTGAGAG+AGG | + | chr4.1:39979695-39979714 | MS.gene050096:CDS | 45.0% |
| ACTGGTGCAGGTGGAAACTT+TGG | + | chr4.1:39979431-39979450 | MS.gene050096:CDS | 50.0% | |
| AGAAACATGCTACCCCACTG+TGG | - | chr4.1:39979575-39979594 | None:intergenic | 50.0% | |
| AGCTCCATGCATGGAGTAAC+TGG | + | chr4.1:39977884-39977903 | MS.gene050096:CDS | 50.0% | |
| ATAGTTGCTCGTCCATTCGG+CGG | + | chr4.1:39979173-39979192 | MS.gene050096:CDS | 50.0% | |
| CTTGTGCTCCAACTGAGAAG+AGG | - | chr4.1:39979340-39979359 | None:intergenic | 50.0% | |
| GAGGAAGGCTATGGACACTT+TGG | + | chr4.1:39979234-39979253 | MS.gene050096:CDS | 50.0% | |
| GATTATTCGGCATGCGAGGA+AGG | + | chr4.1:39979219-39979238 | MS.gene050096:CDS | 50.0% | |
| GCAAGATTATTCGGCATGCG+AGG | + | chr4.1:39979215-39979234 | MS.gene050096:CDS | 50.0% | |
| GCTGATATTGAGGGTTCACC+TGG | + | chr4.1:39977860-39977879 | MS.gene050096:CDS | 50.0% | |
| GCTGCATGTGGTGCAACATT+TGG | + | chr4.1:39979359-39979378 | MS.gene050096:CDS | 50.0% | |
| GTTGGGGTAATATGGGTGGT+GGG | + | chr4.1:39978434-39978453 | MS.gene050096:CDS | 50.0% | |
| TCAGGTTTAACTGGTGCAGG+TGG | + | chr4.1:39979422-39979441 | MS.gene050096:CDS | 50.0% | |
| TCCCGAATGATCGGGACTAA+TGG | - | chr4.1:39978109-39978128 | None:intergenic | 50.0% | |
| TCTGATGCATATCCGCCGAA+TGG | - | chr4.1:39979188-39979207 | None:intergenic | 50.0% | |
| TGCGAATGTCGAGACGAAAC+AGG | - | chr4.1:39978080-39978099 | None:intergenic | 50.0% | |
| TGGATCTTCCAAACCCTAGG+AGG | + | chr4.1:39979254-39979273 | MS.gene050096:CDS | 50.0% | |
| TTGGGGTAATATGGGTGGTG+GGG | + | chr4.1:39978435-39978454 | MS.gene050096:CDS | 50.0% | |
| ! | AATGGTACTGCTGCTGGTTG+GGG | + | chr4.1:39978418-39978437 | MS.gene050096:CDS | 50.0% |
| ! | GCAGGTGGAAACTTTGGTTC+CGG | + | chr4.1:39979437-39979456 | MS.gene050096:CDS | 50.0% |
| ! | GCTGCTGGTTGGGGTAATAT+GGG | + | chr4.1:39978427-39978446 | MS.gene050096:CDS | 50.0% |
| ! | GTGCTACTCCTTTCACTGCT+TGG | + | chr4.1:39978506-39978525 | MS.gene050096:CDS | 50.0% |
| ! | GTGGTGTCAGTTGGAACCAT+TGG | - | chr4.1:39977944-39977963 | None:intergenic | 50.0% |
| ! | TGCTGCTGGTTGGGGTAATA+TGG | + | chr4.1:39978426-39978445 | MS.gene050096:CDS | 50.0% |
| ! | TTCTGAGAGAGGAAAGCGTG+TGG | + | chr4.1:39979706-39979725 | MS.gene050096:CDS | 50.0% |
| ACCTGAAACCGAAGCGACTC+CGG | - | chr4.1:39978167-39978186 | None:intergenic | 55.0% | |
| ACTCCATGCATGGAGCTTCC+AGG | - | chr4.1:39977881-39977900 | None:intergenic | 55.0% | |
| GACTCCGGCGTTACCAACAT+CGG | - | chr4.1:39978152-39978171 | None:intergenic | 55.0% | |
| GCTGGTTGGGGTAATATGGG+TGG | + | chr4.1:39978430-39978449 | MS.gene050096:CDS | 55.0% | |
| GGTTGGGGTAATATGGGTGG+TGG | + | chr4.1:39978433-39978452 | MS.gene050096:CDS | 55.0% | |
| GTTGGAGCACAAGCTGCATG+TGG | + | chr4.1:39979347-39979366 | MS.gene050096:CDS | 55.0% | |
| TCACCTGGAAGCTCCATGCA+TGG | + | chr4.1:39977875-39977894 | MS.gene050096:CDS | 55.0% | |
| TCGGCATGCGAGGAAGGCTA+TGG | + | chr4.1:39979225-39979244 | MS.gene050096:CDS | 60.0% | |
| ! | TGGTAACGCCGGAGTCGCTT+CGG | + | chr4.1:39978156-39978175 | MS.gene050096:CDS | 60.0% |
| GCCGGAGTCGCTTCGGTTTC+AGG | + | chr4.1:39978163-39978182 | MS.gene050096:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 39977857 | 39979769 | 39977857 | ID=MS.gene050096 |
| chr4.1 | mRNA | 39977857 | 39979769 | 39977857 | ID=MS.gene050096.t1;Parent=MS.gene050096 |
| chr4.1 | exon | 39977857 | 39978666 | 39977857 | ID=MS.gene050096.t1.exon1;Parent=MS.gene050096.t1 |
| chr4.1 | CDS | 39977857 | 39978666 | 39977857 | ID=cds.MS.gene050096.t1;Parent=MS.gene050096.t1 |
| chr4.1 | exon | 39978783 | 39978898 | 39978783 | ID=MS.gene050096.t1.exon2;Parent=MS.gene050096.t1 |
| chr4.1 | CDS | 39978783 | 39978898 | 39978783 | ID=cds.MS.gene050096.t1;Parent=MS.gene050096.t1 |
| chr4.1 | exon | 39979115 | 39979769 | 39979115 | ID=MS.gene050096.t1.exon3;Parent=MS.gene050096.t1 |
| chr4.1 | CDS | 39979115 | 39979769 | 39979115 | ID=cds.MS.gene050096.t1;Parent=MS.gene050096.t1 |
| Gene Sequence |
| Protein sequence |
