Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050095.t1 | XP_013455976.1 | 99 | 526 | 5 | 0 | 1 | 526 | 1 | 526 | 4.80E-300 | 1039.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050095.t1 | O82811 | 79.0 | 529 | 108 | 1 | 1 | 526 | 1 | 529 | 1.8e-247 | 856.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050095.t1 | G7IRD1 | 99.0 | 526 | 5 | 0 | 1 | 526 | 1 | 526 | 3.5e-300 | 1039.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049634 | MS.gene050095 | 0.817916 | 2.57E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene050096 | 0.877074 | 8.41E-69 | -1.69E-46 |
| MS.gene050095 | MS.gene050381 | 0.805955 | 1.04E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene050612 | -0.807008 | 6.23E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene05104 | 0.807209 | 5.65E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene051127 | 0.803473 | 3.43E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene053033 | 0.803232 | 3.85E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene053406 | 0.823794 | 1.14E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene053420 | 0.80544 | 1.33E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene053488 | 0.806953 | 6.40E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene053887 | 0.815906 | 7.27E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene054146 | 0.812945 | 3.28E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene054742 | 0.800211 | 1.60E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene055124 | 0.829785 | 4.24E-55 | -1.69E-46 |
| MS.gene050095 | MS.gene055154 | 0.806424 | 8.28E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene056359 | 0.808452 | 3.08E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene058603 | 0.825698 | 4.07E-54 | -1.69E-46 |
| MS.gene050095 | MS.gene059037 | 0.801469 | 8.87E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene059953 | 0.810279 | 1.25E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene064019 | 0.806122 | 9.59E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene064313 | 0.807622 | 4.62E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene065145 | 0.810049 | 1.40E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene066129 | 0.816408 | 5.62E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene066130 | 0.811816 | 5.79E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene066500 | 0.80297 | 4.36E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene066602 | 0.822667 | 2.10E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene066957 | 0.807115 | 5.92E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene067922 | -0.811984 | 5.32E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene068317 | 0.807708 | 4.43E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene069431 | 0.806628 | 7.50E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene069482 | 0.814265 | 1.68E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene070947 | 0.817192 | 3.75E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene071858 | 0.818242 | 2.17E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene071930 | -0.801154 | 1.03E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene071942 | 0.806282 | 8.87E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene072378 | 0.812392 | 4.34E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene072806 | 0.806256 | 8.99E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene072979 | 0.815879 | 7.37E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene073526 | 0.801175 | 1.02E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene073868 | 0.803765 | 2.98E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene074247 | -0.802498 | 5.45E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene074248 | -0.801921 | 7.17E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene08666 | 0.873962 | 9.79E-68 | -1.69E-46 |
| MS.gene050095 | MS.gene08668 | 0.866089 | 3.68E-65 | -1.69E-46 |
| MS.gene050095 | MS.gene08732 | 0.886359 | 3.66E-72 | -1.69E-46 |
| MS.gene050095 | MS.gene08733 | 0.867658 | 1.16E-65 | -1.69E-46 |
| MS.gene050095 | MS.gene08833 | -0.8092 | 2.13E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene08985 | -0.807042 | 6.13E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene21768 | 0.805072 | 1.59E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene22567 | 0.802788 | 4.75E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene23413 | 0.81468 | 1.36E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene24862 | 0.808376 | 3.19E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene26243 | 0.809794 | 1.59E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene26294 | 0.826332 | 2.88E-54 | -1.69E-46 |
| MS.gene050095 | MS.gene26517 | 0.811968 | 5.37E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene28427 | 0.804166 | 2.46E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene28548 | 0.807466 | 4.99E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene29268 | 0.801931 | 7.13E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene29827 | 0.804934 | 1.70E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene30394 | 0.80446 | 2.14E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene30556 | -0.800557 | 1.36E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene31867 | 0.805934 | 1.05E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene33336 | 0.801163 | 1.02E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene34373 | 0.820929 | 5.29E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene35208 | 0.804424 | 2.17E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene35598 | 0.809171 | 2.16E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene36927 | 0.819916 | 9.03E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene37538 | 0.806065 | 9.86E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene37560 | 0.811695 | 6.16E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene37747 | 0.812614 | 3.88E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene38097 | 0.821815 | 3.30E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene38435 | 0.823143 | 1.62E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene40172 | 0.814729 | 1.33E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene42080 | 0.831411 | 1.69E-55 | -1.69E-46 |
| MS.gene050095 | MS.gene43874 | 0.823932 | 1.06E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene44712 | 0.813271 | 2.79E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene46024 | 0.824119 | 9.59E-54 | -1.69E-46 |
| MS.gene050095 | MS.gene46027 | 0.81731 | 3.52E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene46433 | 0.803308 | 3.71E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene46779 | 0.817687 | 2.90E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene48314 | 0.81385 | 2.08E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene48805 | 0.827032 | 1.96E-54 | -1.69E-46 |
| MS.gene050095 | MS.gene48806 | 0.830783 | 2.42E-55 | -1.69E-46 |
| MS.gene050095 | MS.gene48807 | 0.805075 | 1.59E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene48885 | 0.818266 | 2.14E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene48989 | 0.811092 | 8.32E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene50279 | 0.839837 | 1.25E-57 | -1.69E-46 |
| MS.gene050095 | MS.gene50561 | -0.804365 | 2.24E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene51124 | 0.804915 | 1.72E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene51523 | 0.828645 | 8.01E-55 | -1.69E-46 |
| MS.gene050095 | MS.gene51620 | 0.800824 | 1.20E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene52370 | 0.801781 | 7.66E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene54029 | 0.829867 | 4.05E-55 | -1.69E-46 |
| MS.gene050095 | MS.gene54574 | 0.817122 | 3.88E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene54577 | 0.809512 | 1.82E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene56250 | 0.801848 | 7.42E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene56509 | 0.824218 | 9.09E-54 | -1.69E-46 |
| MS.gene050095 | MS.gene58107 | 0.808673 | 2.76E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene58464 | 0.809444 | 1.89E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene59005 | 0.823751 | 1.17E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene59395 | 0.808687 | 2.74E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene60477 | 0.836417 | 9.48E-57 | -1.69E-46 |
| MS.gene050095 | MS.gene61194 | 0.825201 | 5.33E-54 | -1.69E-46 |
| MS.gene050095 | MS.gene62114 | 0.820743 | 5.84E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene62222 | 0.80754 | 4.81E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene63444 | 0.826893 | 2.11E-54 | -1.69E-46 |
| MS.gene050095 | MS.gene63480 | -0.801099 | 1.06E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene63691 | 0.808784 | 2.61E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene63706 | 0.821982 | 3.02E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene64372 | 0.813226 | 2.85E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene64686 | 0.801196 | 1.01E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene65497 | 0.807159 | 5.79E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene65500 | 0.826399 | 2.77E-54 | -1.69E-46 |
| MS.gene050095 | MS.gene65833 | 0.802985 | 4.33E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene65948 | 0.807647 | 4.56E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene65951 | 0.826254 | 3.00E-54 | -1.69E-46 |
| MS.gene050095 | MS.gene66895 | 0.801778 | 7.67E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene67682 | 0.814032 | 1.89E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene69635 | 0.807096 | 5.97E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene69966 | 0.828354 | 9.42E-55 | -1.69E-46 |
| MS.gene050095 | MS.gene70061 | 0.828023 | 1.13E-54 | -1.69E-46 |
| MS.gene050095 | MS.gene71251 | 0.852417 | 4.68E-61 | -1.69E-46 |
| MS.gene050095 | MS.gene71268 | -0.804909 | 1.72E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene71326 | -0.814207 | 1.73E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene71350 | 0.817378 | 3.40E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene74774 | 0.833888 | 4.12E-56 | -1.69E-46 |
| MS.gene050095 | MS.gene74786 | 0.812289 | 4.57E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene75396 | 0.816797 | 4.59E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene76737 | 0.815942 | 7.14E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene76738 | 0.831005 | 2.13E-55 | -1.69E-46 |
| MS.gene050095 | MS.gene77032 | 0.806557 | 7.77E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene77033 | 0.824372 | 8.37E-54 | -1.69E-46 |
| MS.gene050095 | MS.gene77471 | 0.813953 | 1.97E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene77829 | 0.800638 | 1.31E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene78687 | 0.810805 | 9.60E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene79026 | -0.804168 | 2.46E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene79624 | 0.823005 | 1.75E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene80744 | 0.813121 | 3.00E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene80968 | -0.802468 | 5.53E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene80969 | -0.804332 | 2.27E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene81067 | -0.802067 | 6.69E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene81349 | 0.81622 | 6.19E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene81504 | 0.808227 | 3.44E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene81505 | 0.814844 | 1.25E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene81506 | 0.81795 | 2.53E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene82112 | 0.820282 | 7.45E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene82244 | 0.816007 | 6.90E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene82245 | 0.845026 | 5.25E-59 | -1.69E-46 |
| MS.gene050095 | MS.gene82855 | 0.805972 | 1.03E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene82858 | 0.801064 | 1.07E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene83329 | 0.80197 | 7.00E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene84568 | 0.802901 | 4.50E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene84947 | 0.800435 | 1.44E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene85485 | 0.809212 | 2.12E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene85494 | 0.820177 | 7.87E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene87056 | 0.831848 | 1.32E-55 | -1.69E-46 |
| MS.gene050095 | MS.gene87222 | 0.8035 | 3.39E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene87450 | 0.802553 | 5.31E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene87750 | 0.826655 | 2.41E-54 | -1.69E-46 |
| MS.gene050095 | MS.gene89261 | 0.803271 | 3.78E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene89495 | 0.803484 | 3.41E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene89774 | 0.810663 | 1.03E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene91223 | 0.805927 | 1.05E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene91226 | 0.813939 | 1.99E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene91533 | -0.801039 | 1.09E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene91973 | 0.805237 | 1.47E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene92296 | 0.80038 | 1.48E-48 | -1.69E-46 |
| MS.gene050095 | MS.gene92334 | 0.807984 | 3.87E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene92939 | 0.806453 | 8.17E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene94790 | 0.811159 | 8.05E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene95132 | 0.809291 | 2.03E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene95804 | 0.845036 | 5.22E-59 | -1.69E-46 |
| MS.gene050095 | MS.gene96299 | 0.812948 | 3.28E-51 | -1.69E-46 |
| MS.gene050095 | MS.gene96516 | 0.817961 | 2.51E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene97131 | 0.803813 | 2.91E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene97499 | 0.816632 | 5.00E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene97500 | 0.806627 | 7.51E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene98322 | 0.802438 | 5.61E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene98475 | 0.816272 | 6.02E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene98874 | 0.810163 | 1.32E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene99062 | 0.824637 | 7.24E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08732 | MS.gene050095 | PPI |
| MS.gene056444 | MS.gene050095 | PPI |
| MS.gene08666 | MS.gene050095 | PPI |
| MS.gene067952 | MS.gene050095 | PPI |
| MS.gene97933 | MS.gene050095 | PPI |
| MS.gene007705 | MS.gene050095 | PPI |
| MS.gene08733 | MS.gene050095 | PPI |
| MS.gene050095 | MS.gene050096 | PPI |
| MS.gene050095 | MS.gene008847 | PPI |
| MS.gene007704 | MS.gene050095 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050095.t1 | MTR_4g057890 | 99.049 | 526 | 5 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1069 |
| MS.gene050095.t1 | MTR_4g057865 | 98.859 | 526 | 6 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1068 |
| MS.gene050095.t1 | MTR_8g069775 | 61.554 | 489 | 186 | 2 | 38 | 524 | 18 | 506 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050095.t1 | AT1G08090 | 79.017 | 529 | 108 | 1 | 1 | 526 | 1 | 529 | 0.0 | 882 |
| MS.gene050095.t1 | AT5G60770 | 79.017 | 529 | 105 | 2 | 1 | 526 | 1 | 526 | 0.0 | 877 |
| MS.gene050095.t1 | AT1G08100 | 75.048 | 517 | 126 | 2 | 7 | 521 | 6 | 521 | 0.0 | 818 |
| MS.gene050095.t1 | AT5G60780 | 72.983 | 533 | 136 | 3 | 2 | 526 | 6 | 538 | 0.0 | 793 |
| MS.gene050095.t1 | AT3G45060 | 72.097 | 534 | 136 | 4 | 5 | 526 | 9 | 541 | 0.0 | 780 |
| MS.gene050095.t1 | AT1G12940 | 59.259 | 486 | 194 | 2 | 38 | 522 | 20 | 502 | 0.0 | 605 |
| MS.gene050095.t1 | AT5G14570 | 48.511 | 470 | 220 | 4 | 41 | 493 | 18 | 482 | 2.71e-151 | 442 |
Find 133 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGAGTCGCTTCGGTTTC+AGG | 0.105482 | 4.1:-39997547 | MS.gene050095:CDS |
| GCATGTTATCATGGGTATTT+TGG | 0.143284 | 4.1:-39997152 | MS.gene050095:CDS |
| TGCTGCTGGTTGGGGTAATA+TGG | 0.200878 | 4.1:-39997284 | MS.gene050095:CDS |
| GGAATCATTGCTGCATCTTT+TGG | 0.201038 | 4.1:-39996573 | MS.gene050095:CDS |
| ATCTACAGGTAATGCAAATT+TGG | 0.213428 | 4.1:+39997744 | None:intergenic |
| AAAATTATTGGACTTGTTAA+TGG | 0.213969 | 4.1:-39997310 | MS.gene050095:CDS |
| ATGTTTAATAGTAAAATTAT+TGG | 0.217642 | 4.1:-39997322 | MS.gene050095:CDS |
| CATTTGTTTCATGCCAATAT+TGG | 0.240129 | 4.1:-39997354 | MS.gene050095:CDS |
| ACTGCTTTATGGTTACTCTA+TGG | 0.275641 | 4.1:-39996877 | MS.gene050095:CDS |
| GGTTGCATCAACCAAGTCTT+AGG | 0.277283 | 4.1:-39996047 | MS.gene050095:CDS |
| CAACAGCTTCAGGTCTTTCA+TGG | 0.291908 | 4.1:-39996215 | MS.gene050095:CDS |
| CGTCGGATTTCGTGAGGTTA+AGG | 0.293043 | 4.1:+39997578 | None:intergenic |
| CACTCAGCTTATTATGCCTT+TGG | 0.295935 | 4.1:-39997251 | MS.gene050095:CDS |
| GTTTATGATTGGTTTCTCTT+TGG | 0.307610 | 4.1:-39997380 | MS.gene050095:CDS |
| TAATGGTACTGCTGCTGGTT+GGG | 0.317688 | 4.1:-39997293 | MS.gene050095:CDS |
| GATGTTGCAGCAAGATTATT+CGG | 0.318773 | 4.1:-39996507 | MS.gene050095:CDS |
| GGAATAATATCAGGTTTAAC+TGG | 0.326492 | 4.1:-39996300 | MS.gene050095:CDS |
| CCATGTCCTGTAATTTGTTA+TGG | 0.341386 | 4.1:+39996908 | None:intergenic |
| TGAAAAGAGTTTGAAAACTT+TGG | 0.345000 | 4.1:+39997708 | None:intergenic |
| TTCATATCAAGAAGATCTTT+AGG | 0.352927 | 4.1:-39996321 | MS.gene050095:CDS |
| GGTGCAATTTGTGACCTATT+AGG | 0.354243 | 4.1:-39997499 | MS.gene050095:CDS |
| CGCCATTAGTCCCGATCATC+CGG | 0.360837 | 4.1:-39997606 | MS.gene050095:CDS |
| ACATAGTACTCATCCAATAT+TGG | 0.362676 | 4.1:+39997341 | None:intergenic |
| AGAAAGATATCCATGATAAA+TGG | 0.374158 | 4.1:+39997659 | None:intergenic |
| TTCCGGCTGTGTGTAGCTTT+AGG | 0.375698 | 4.1:+39996592 | None:intergenic |
| AGATCTTTAGGAATAATATC+AGG | 0.377046 | 4.1:-39996309 | MS.gene050095:CDS |
| TGGTTGGTTGCATGTTATCA+TGG | 0.382144 | 4.1:-39997161 | MS.gene050095:CDS |
| GTGCTACTCCTTTCACTGCT+TGG | 0.383160 | 4.1:-39997204 | MS.gene050095:CDS |
| CTGCTGGTTATATAGCAGTT+AGG | 0.391168 | 4.1:-39997402 | MS.gene050095:CDS |
| TAGTGGGTAGGAGTTGTATT+TGG | 0.393817 | 4.1:+39995967 | None:intergenic |
| GGTTGGGGTAATATGGGTGG+TGG | 0.398747 | 4.1:-39997277 | MS.gene050095:CDS |
| GCAGGTGGAAACTTTGGTTC+CGG | 0.404321 | 4.1:-39996276 | MS.gene050095:CDS |
| AACTTAGTTGCTCGTCCATT+CGG | 0.406657 | 4.1:-39996543 | MS.gene050095:CDS |
| AACCATAACGTGGACCTAAT+AGG | 0.411808 | 4.1:+39997485 | None:intergenic |
| GCTGCTGGTTGGGGTAATAT+GGG | 0.417787 | 4.1:-39997283 | MS.gene050095:CDS |
| GCTGCATGTGGTGCAACATT+TGG | 0.420104 | 4.1:-39996354 | MS.gene050095:CDS |
| GGTATGCCATAACAAATTAC+AGG | 0.421451 | 4.1:-39996914 | MS.gene050095:CDS |
| AGCTCCATGCATGGAGTCAC+TGG | 0.423974 | 4.1:-39997826 | MS.gene050095:CDS |
| TCGGCATGCGAGGAAGACTA+TGG | 0.425122 | 4.1:-39996488 | MS.gene050095:CDS |
| ACTCCATGCATGGAGCTTCC+CGG | 0.429985 | 4.1:+39997832 | None:intergenic |
| GGCTGATATTGAGGGTTCAC+CGG | 0.434128 | 4.1:-39997851 | MS.gene050095:CDS |
| GTTGGGGTAATATGGGTGGT+GGG | 0.435234 | 4.1:-39997276 | MS.gene050095:CDS |
| ATAGCAGTTAGGTTTATGAT+TGG | 0.436014 | 4.1:-39997391 | MS.gene050095:CDS |
| CTGCTTTATGGTTACTCTAT+GGG | 0.436463 | 4.1:-39996876 | MS.gene050095:CDS |
| TGGATGGGTGCAATGATTGT+TGG | 0.437054 | 4.1:-39996195 | MS.gene050095:CDS |
| AGAAAACTCCACCTAGGGTT+TGG | 0.441383 | 4.1:+39996451 | None:intergenic |
| AAAGATCTTCTTGATATGAA+TGG | 0.442192 | 4.1:+39996324 | None:intergenic |
| TATATCAATGGCTGATATTG+AGG | 0.442270 | 4.1:-39997860 | None:intergenic |
| AAATATCAACTGTGTTAATC+CGG | 0.442980 | 4.1:+39996257 | None:intergenic |
| GACCTATTAGGTCCACGTTA+TGG | 0.448846 | 4.1:-39997487 | MS.gene050095:CDS |
| AATGGTACTGCTGCTGGTTG+GGG | 0.451568 | 4.1:-39997292 | MS.gene050095:CDS |
| AACATTACCCTTCTTCTGTA+AGG | 0.451966 | 4.1:+39997087 | None:intergenic |
| ACTGGTGCAGGTGGAAACTT+TGG | 0.451991 | 4.1:-39996282 | MS.gene050095:CDS |
| GGAAAATGAACAAATGCAAC+AGG | 0.456403 | 4.1:+39996162 | None:intergenic |
| TGAGAACCTTCCATTTATCA+TGG | 0.456413 | 4.1:-39997669 | MS.gene050095:CDS |
| TTGGTGCAGTTAGCATAATA+AGG | 0.458274 | 4.1:+39997455 | None:intergenic |
| CTTGTTAATGGTACTGCTGC+TGG | 0.461616 | 4.1:-39997298 | MS.gene050095:CDS |
| AAAAGATGCAGCAATGATTC+CGG | 0.462118 | 4.1:+39996575 | None:intergenic |
| AGCTTCAGGTCTTTCATGGA+TGG | 0.465615 | 4.1:-39996211 | MS.gene050095:CDS |
| TAAGGTTGTCCCGGATGATC+GGG | 0.469055 | 4.1:+39997596 | None:intergenic |
| TTGCTGAGTATTTCTATGAC+AGG | 0.469828 | 4.1:-39996827 | MS.gene050095:intron |
| AACACTATTACACTTCTGAA+TGG | 0.470788 | 4.1:-39996092 | MS.gene050095:CDS |
| GGTTACCATCAGGTAAATCT+TGG | 0.480850 | 4.1:+39997116 | None:intergenic |
| TCCCGGATGATCGGGACTAA+TGG | 0.482655 | 4.1:+39997604 | None:intergenic |
| TGGTAACGCTGGAGTCGCTT+CGG | 0.493073 | 4.1:-39997554 | MS.gene050095:CDS |
| ATATCAGGTTTAACTGGTGC+AGG | 0.496822 | 4.1:-39996294 | MS.gene050095:CDS |
| CCTTGGTGCCTTACAGAAGA+AGG | 0.498271 | 4.1:-39997095 | MS.gene050095:CDS |
| TTAATGGTACTGCTGCTGGT+TGG | 0.498414 | 4.1:-39997294 | MS.gene050095:CDS |
| TCTTCCAGTGACTCCATGCA+TGG | 0.500141 | 4.1:+39997822 | None:intergenic |
| CCATAACAAATTACAGGACA+TGG | 0.502596 | 4.1:-39996908 | MS.gene050095:CDS |
| TTGGGGTAATATGGGTGGTG+GGG | 0.507796 | 4.1:-39997275 | MS.gene050095:CDS |
| TCGTGAGGTTAAGGTTGTCC+CGG | 0.513783 | 4.1:+39997587 | None:intergenic |
| TTAAGGTTGTCCCGGATGAT+CGG | 0.515983 | 4.1:+39997595 | None:intergenic |
| GCTGATATTGAGGGTTCACC+GGG | 0.522003 | 4.1:-39997850 | MS.gene050095:CDS |
| GATTTGTGTTCTGAATCTAC+AGG | 0.523397 | 4.1:+39997730 | None:intergenic |
| GTGGTATCAGTTGGAACCAT+TGG | 0.524676 | 4.1:+39997769 | None:intergenic |
| ATGAAGATGAAGTACAGAAA+GGG | 0.525551 | 4.1:-39996068 | MS.gene050095:CDS |
| AATGAAGATGAAGTACAGAA+AGG | 0.527504 | 4.1:-39996069 | MS.gene050095:CDS |
| TCATTTGTTGAAAATGCTGC+TGG | 0.536611 | 4.1:-39997418 | MS.gene050095:CDS |
| GATTTACCTGATGGTAACCT+TGG | 0.538623 | 4.1:-39997112 | MS.gene050095:CDS |
| TCCATGATCCTCTTCTCAGT+TGG | 0.543814 | 4.1:-39996384 | MS.gene050095:CDS |
| ATATCAATGGCTGATATTGA+GGG | 0.546989 | 4.1:-39997859 | None:intergenic |
| TTCTCAGCAAACCTAAGACT+TGG | 0.549078 | 4.1:+39996036 | None:intergenic |
| GGTTGGTTGCATGTTATCAT+GGG | 0.550695 | 4.1:-39997160 | MS.gene050095:CDS |
| GCTTCAGGTCTTTCATGGAT+GGG | 0.552112 | 4.1:-39996210 | MS.gene050095:CDS |
| ATGATAACATGCAACCAACC+AGG | 0.556711 | 4.1:+39997163 | None:intergenic |
| AACCTAAAGCTACACACAGC+CGG | 0.558064 | 4.1:-39996594 | MS.gene050095:CDS |
| CTTGTGCTCCAACTGAGAAG+AGG | 0.561854 | 4.1:+39996376 | None:intergenic |
| GGCATATAACTTGTACTAGT+GGG | 0.562820 | 4.1:+39995951 | None:intergenic |
| TGGGTAGGAGTTGTATTTGG+TGG | 0.563220 | 4.1:+39995970 | None:intergenic |
| TCTGATGCATAACCGCCGAA+TGG | 0.569739 | 4.1:+39996528 | None:intergenic |
| TTAGTTGCTCGTCCATTCGG+CGG | 0.569840 | 4.1:-39996540 | MS.gene050095:CDS |
| AATTTGGCTGTGGTATCAGT+TGG | 0.576596 | 4.1:+39997760 | None:intergenic |
| GCAATTCTCCAAGCAGTGAA+AGG | 0.578221 | 4.1:+39997196 | None:intergenic |
| GAGAATAGTCGTTCTGAGAG+AGG | 0.578576 | 4.1:-39996018 | MS.gene050095:CDS |
| AATGACATACAAAACACTGT+TGG | 0.582355 | 4.1:+39997436 | None:intergenic |
| TCACCGGGAAGCTCCATGCA+TGG | 0.584160 | 4.1:-39997835 | MS.gene050095:CDS |
| AAATCCGACGTTGGTAACGC+TGG | 0.586068 | 4.1:-39997565 | MS.gene050095:CDS |
| AAATGGAAGGTTCTCATGTG+AGG | 0.586590 | 4.1:+39997676 | None:intergenic |
| CCTTCTTCTGTAAGGCACCA+AGG | 0.586854 | 4.1:+39997095 | None:intergenic |
| AGGTAATGCAAATTTGGCTG+TGG | 0.589487 | 4.1:+39997750 | None:intergenic |
| TATGAGTTGATTAGAAGAGC+TGG | 0.589543 | 4.1:-39997226 | MS.gene050095:CDS |
| AAGGCACCAAGGTTACCATC+AGG | 0.593630 | 4.1:+39997106 | None:intergenic |
| TTAGGCCAAGATTTACCTGA+TGG | 0.597509 | 4.1:-39997121 | MS.gene050095:CDS |
| TACCAACGTCGGATTTCGTG+AGG | 0.605986 | 4.1:+39997572 | None:intergenic |
| TCAGGTTTAACTGGTGCAGG+TGG | 0.608725 | 4.1:-39996291 | MS.gene050095:CDS |
| ATCATGGATAGTACTGCGAT+CGG | 0.609698 | 4.1:+39996399 | None:intergenic |
| TATAACTTGTACTAGTGGGT+AGG | 0.614728 | 4.1:+39995955 | None:intergenic |
| TCCAACTGAGAAGAGGATCA+TGG | 0.614752 | 4.1:+39996383 | None:intergenic |
| AATGGAAGGTTCTCATGTGA+GGG | 0.615898 | 4.1:+39997677 | None:intergenic |
| CTAATCAACTCATACACCAA+AGG | 0.617873 | 4.1:+39997235 | None:intergenic |
| GCCATTAGTCCCGATCATCC+GGG | 0.620270 | 4.1:-39997605 | MS.gene050095:CDS |
| TGGATCTTCCAAACCCTAGG+TGG | 0.623341 | 4.1:-39996459 | MS.gene050095:CDS |
| GTCATCAGTAGCTTCACCAA+TGG | 0.624224 | 4.1:-39997785 | MS.gene050095:CDS |
| AGATATCCATGATAAATGGA+AGG | 0.625047 | 4.1:+39997663 | None:intergenic |
| TGAAGCTACTGATGACATGA+AGG | 0.625666 | 4.1:+39997792 | None:intergenic |
| GCTGGTTGGGGTAATATGGG+TGG | 0.628336 | 4.1:-39997280 | MS.gene050095:CDS |
| CTTGGTGCCTTACAGAAGAA+GGG | 0.632453 | 4.1:-39997094 | MS.gene050095:CDS |
| GAGGAAGACTATGGACACTC+TGG | 0.635045 | 4.1:-39996479 | MS.gene050095:CDS |
| GCAAGATTATTCGGCATGCG+AGG | 0.636291 | 4.1:-39996498 | MS.gene050095:CDS |
| TATGCAGAAAACTCCACCTA+GGG | 0.637321 | 4.1:+39996446 | None:intergenic |
| CTCTGGATCTTCCAAACCCT+AGG | 0.639945 | 4.1:-39996462 | MS.gene050095:CDS |
| CTCAGCAATGACATTGTCAG+TGG | 0.646298 | 4.1:+39996842 | None:intergenic |
| TGATAACATGCAACCAACCA+GGG | 0.648113 | 4.1:+39997164 | None:intergenic |
| ATATGCAGAAAACTCCACCT+AGG | 0.648525 | 4.1:+39996445 | None:intergenic |
| TGCTAAAGACAAGTTCACAA+AGG | 0.663793 | 4.1:-39997065 | MS.gene050095:intron |
| TTCTGAGAGAGGAAAACGTG+TGG | 0.676787 | 4.1:-39996007 | MS.gene050095:CDS |
| AACCTCACGAAATCCGACGT+TGG | 0.679989 | 4.1:-39997574 | MS.gene050095:CDS |
| GTTGGAGCACAAGCTGCATG+TGG | 0.687636 | 4.1:-39996366 | MS.gene050095:CDS |
| AGGAAAGCACAACCATAACG+TGG | 0.709978 | 4.1:+39997475 | None:intergenic |
| GACTCCAGCGTTACCAACGT+CGG | 0.710420 | 4.1:+39997561 | None:intergenic |
| CAAAGGCATAATAAGCTGAG+TGG | 0.711499 | 4.1:+39997252 | None:intergenic |
| AGGAACATGCTACCCCACTG+TGG | 0.730068 | 4.1:+39996141 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTTAATAGTAAAATTAT+TGG | - | chr4.1:39996497-39996516 | MS.gene050095:CDS | 10.0% |
| !! | TCTAATGAATTAAATAAAAC+AGG | - | chr4.1:39997199-39997218 | MS.gene050095:CDS | 15.0% |
| !!! | CACAATTTAAAATTATAATC+TGG | - | chr4.1:39997109-39997128 | MS.gene050095:CDS | 15.0% |
| !!! | CAGATTATAATTTTAAATTG+TGG | + | chr4.1:39997111-39997130 | None:intergenic | 15.0% |
| !!! | AAAATTATTGGACTTGTTAA+TGG | - | chr4.1:39996509-39996528 | MS.gene050095:CDS | 20.0% |
| !!! | ACAAACTTTTTAAAAAACCT+AGG | - | chr4.1:39997141-39997160 | MS.gene050095:CDS | 20.0% |
| !!! | GATTATGATTTTTTTTCTTC+AGG | - | chr4.1:39996876-39996895 | MS.gene050095:CDS | 20.0% |
| ! | AAAGATCTTCTTGATATGAA+TGG | + | chr4.1:39997498-39997517 | None:intergenic | 25.0% |
| ! | AAATATCAACTGTGTTAATC+CGG | + | chr4.1:39997565-39997584 | None:intergenic | 25.0% |
| ! | AGAAAGATATCCATGATAAA+TGG | + | chr4.1:39996163-39996182 | None:intergenic | 25.0% |
| ! | CTAGTTAGTCACTTAATTTA+AGG | - | chr4.1:39996784-39996803 | MS.gene050095:intron | 25.0% |
| ! | GTAGATATATACAATTCTTG+AGG | + | chr4.1:39997052-39997071 | None:intergenic | 25.0% |
| ! | TGAAAAGAGTTTGAAAACTT+TGG | + | chr4.1:39996114-39996133 | None:intergenic | 25.0% |
| ! | TTCATATCAAGAAGATCTTT+AGG | - | chr4.1:39997498-39997517 | MS.gene050095:CDS | 25.0% |
| !! | AGATCTTTAGGAATAATATC+AGG | - | chr4.1:39997510-39997529 | MS.gene050095:CDS | 25.0% |
| !! | AGTTTTCAAACTCTTTTCAA+TGG | - | chr4.1:39996115-39996134 | MS.gene050095:CDS | 25.0% |
| !!! | CTCATTGATTAATTGTTTTG+TGG | + | chr4.1:39996819-39996838 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCTTCAGGTTTTG+TGG | - | chr4.1:39996884-39996903 | MS.gene050095:CDS | 25.0% |
| AAAAATTGTTAGAGTCTCCT+AGG | + | chr4.1:39997161-39997180 | None:intergenic | 30.0% | |
| AACACTATTACACTTCTGAA+TGG | - | chr4.1:39997727-39997746 | MS.gene050095:CDS | 30.0% | |
| AATGAAGATGAAGTACAGAA+AGG | - | chr4.1:39997750-39997769 | MS.gene050095:CDS | 30.0% | |
| AATGACATACAAAACACTGT+TGG | + | chr4.1:39996386-39996405 | None:intergenic | 30.0% | |
| ACATAGTACTCATCCAATAT+TGG | + | chr4.1:39996481-39996500 | None:intergenic | 30.0% | |
| AGATATCCATGATAAATGGA+AGG | + | chr4.1:39996159-39996178 | None:intergenic | 30.0% | |
| ATAGCAGTTAGGTTTATGAT+TGG | - | chr4.1:39996428-39996447 | MS.gene050095:CDS | 30.0% | |
| ATCTACAGGTAATGCAAATT+TGG | + | chr4.1:39996078-39996097 | None:intergenic | 30.0% | |
| ATGAAGATGAAGTACAGAAA+GGG | - | chr4.1:39997751-39997770 | MS.gene050095:CDS | 30.0% | |
| CATTTGTTTCATGCCAATAT+TGG | - | chr4.1:39996465-39996484 | MS.gene050095:CDS | 30.0% | |
| GGAATAATATCAGGTTTAAC+TGG | - | chr4.1:39997519-39997538 | MS.gene050095:CDS | 30.0% | |
| ! | ATTTGTTCATTTTCCACAGT+GGG | - | chr4.1:39997665-39997684 | MS.gene050095:CDS | 30.0% |
| ! | TCAAAATTTTCAACAGCTTC+AGG | - | chr4.1:39997594-39997613 | MS.gene050095:CDS | 30.0% |
| ! | TCTTCATTGATCTCTTTTGA+AGG | + | chr4.1:39997708-39997727 | None:intergenic | 30.0% |
| !! | GTTTATGATTGGTTTCTCTT+TGG | - | chr4.1:39996439-39996458 | MS.gene050095:CDS | 30.0% |
| !!! | GGTATTTTGGTCTTAACATT+AGG | - | chr4.1:39996680-39996699 | MS.gene050095:intron | 30.0% |
| AAAAGATGCAGCAATGATTC+CGG | + | chr4.1:39997247-39997266 | None:intergenic | 35.0% | |
| AACATTACCCTTCTTCTGTA+AGG | + | chr4.1:39996735-39996754 | None:intergenic | 35.0% | |
| ACTGCTTTATGGTTACTCTA+TGG | - | chr4.1:39996942-39996961 | MS.gene050095:intron | 35.0% | |
| CCATAACAAATTACAGGACA+TGG | - | chr4.1:39996911-39996930 | MS.gene050095:CDS | 35.0% | |
| CTAATCAACTCATACACCAA+AGG | + | chr4.1:39996587-39996606 | None:intergenic | 35.0% | |
| CTGCTTTATGGTTACTCTAT+GGG | - | chr4.1:39996943-39996962 | MS.gene050095:intron | 35.0% | |
| GATGTTGCAGCAAGATTATT+CGG | - | chr4.1:39997312-39997331 | MS.gene050095:CDS | 35.0% | |
| GGAAAATGAACAAATGCAAC+AGG | + | chr4.1:39997660-39997679 | None:intergenic | 35.0% | |
| GGTATGCCATAACAAATTAC+AGG | - | chr4.1:39996905-39996924 | MS.gene050095:CDS | 35.0% | |
| TGAGAACCTTCCATTTATCA+TGG | - | chr4.1:39996150-39996169 | MS.gene050095:CDS | 35.0% | |
| TGCTAAAGACAAGTTCACAA+AGG | - | chr4.1:39996754-39996773 | MS.gene050095:intron | 35.0% | |
| TTAAATTGCAACTGCAGTTG+CGG | - | chr4.1:39997084-39997103 | MS.gene050095:CDS | 35.0% | |
| TTGGTGCAGTTAGCATAATA+AGG | + | chr4.1:39996367-39996386 | None:intergenic | 35.0% | |
| ! | ATTTTCTCAAGGCTTGCAAT+GGG | - | chr4.1:39996299-39996318 | MS.gene050095:CDS | 35.0% |
| ! | CATTTGTTCATTTTCCACAG+TGG | - | chr4.1:39997664-39997683 | MS.gene050095:CDS | 35.0% |
| ! | GATTTGTGTTCTGAATCTAC+AGG | + | chr4.1:39996092-39996111 | None:intergenic | 35.0% |
| ! | GCATGTTATCATGGGTATTT+TGG | - | chr4.1:39996667-39996686 | MS.gene050095:intron | 35.0% |
| ! | TCATTTGTTGAAAATGCTGC+TGG | - | chr4.1:39996401-39996420 | MS.gene050095:CDS | 35.0% |
| ! | TGGATTTTTGCACTGCTTTA+TGG | - | chr4.1:39996931-39996950 | MS.gene050095:intron | 35.0% |
| ! | TTGCTGAGTATTTCTATGAC+AGG | - | chr4.1:39996992-39997011 | MS.gene050095:intron | 35.0% |
| ! | TTTGTTCATTTTCCACAGTG+GGG | - | chr4.1:39997666-39997685 | MS.gene050095:CDS | 35.0% |
| !! | CCATGTCCTGTAATTTGTTA+TGG | + | chr4.1:39996914-39996933 | None:intergenic | 35.0% |
| !! | TATGAGTTGATTAGAAGAGC+TGG | - | chr4.1:39996593-39996612 | MS.gene050095:CDS | 35.0% |
| !! | TCATTGATCTCTTTTGAAGG+TGG | + | chr4.1:39997705-39997724 | None:intergenic | 35.0% |
| !! | TTTCAGGTAGCATTTTCTCA+AGG | - | chr4.1:39996288-39996307 | MS.gene050095:CDS | 35.0% |
| !!! | AGAATTGCCTTTTTTATCCC+TGG | - | chr4.1:39996638-39996657 | MS.gene050095:intron | 35.0% |
| AAATGGAAGGTTCTCATGTG+AGG | + | chr4.1:39996146-39996165 | None:intergenic | 40.0% | |
| AACCATAACGTGGACCTAAT+AGG | + | chr4.1:39996337-39996356 | None:intergenic | 40.0% | |
| AACTTAGTTGCTCGTCCATT+CGG | - | chr4.1:39997276-39997295 | MS.gene050095:CDS | 40.0% | |
| AATGGAAGGTTCTCATGTGA+GGG | + | chr4.1:39996145-39996164 | None:intergenic | 40.0% | |
| AATTTGGCTGTGGTATCAGT+TGG | + | chr4.1:39996062-39996081 | None:intergenic | 40.0% | |
| AGGTAATGCAAATTTGGCTG+TGG | + | chr4.1:39996072-39996091 | None:intergenic | 40.0% | |
| ATATCAGGTTTAACTGGTGC+AGG | - | chr4.1:39997525-39997544 | MS.gene050095:CDS | 40.0% | |
| ATATGCAGAAAACTCCACCT+AGG | + | chr4.1:39997377-39997396 | None:intergenic | 40.0% | |
| ATCATGGATAGTACTGCGAT+CGG | + | chr4.1:39997423-39997442 | None:intergenic | 40.0% | |
| ATGATAACATGCAACCAACC+AGG | + | chr4.1:39996659-39996678 | None:intergenic | 40.0% | |
| CAACCAACCAGGGATAAAAA+AGG | + | chr4.1:39996648-39996667 | None:intergenic | 40.0% | |
| CACTCAGCTTATTATGCCTT+TGG | - | chr4.1:39996568-39996587 | MS.gene050095:CDS | 40.0% | |
| GATTTACCTGATGGTAACCT+TGG | - | chr4.1:39996707-39996726 | MS.gene050095:intron | 40.0% | |
| GGTGCAATTTGTGACCTATT+AGG | - | chr4.1:39996320-39996339 | MS.gene050095:CDS | 40.0% | |
| GGTTACCATCAGGTAAATCT+TGG | + | chr4.1:39996706-39996725 | None:intergenic | 40.0% | |
| TATGCAGAAAACTCCACCTA+GGG | + | chr4.1:39997376-39997395 | None:intergenic | 40.0% | |
| TGAAGCTACTGATGACATGA+AGG | + | chr4.1:39996030-39996049 | None:intergenic | 40.0% | |
| TGATAACATGCAACCAACCA+GGG | + | chr4.1:39996658-39996677 | None:intergenic | 40.0% | |
| TTAGGCCAAGATTTACCTGA+TGG | - | chr4.1:39996698-39996717 | MS.gene050095:intron | 40.0% | |
| TTCTCAGCAAACCTAAGACT+TGG | + | chr4.1:39997786-39997805 | None:intergenic | 40.0% | |
| ! | CAAAGGCATAATAAGCTGAG+TGG | + | chr4.1:39996570-39996589 | None:intergenic | 40.0% |
| ! | CATTTTCTCAAGGCTTGCAA+TGG | - | chr4.1:39996298-39996317 | MS.gene050095:CDS | 40.0% |
| ! | CTGCTGGTTATATAGCAGTT+AGG | - | chr4.1:39996417-39996436 | MS.gene050095:CDS | 40.0% |
| ! | GGAATCATTGCTGCATCTTT+TGG | - | chr4.1:39997246-39997265 | MS.gene050095:CDS | 40.0% |
| ! | GGAGTTTTCTGCATATGGTT+AGG | - | chr4.1:39997381-39997400 | MS.gene050095:CDS | 40.0% |
| ! | GGTTGGTTGCATGTTATCAT+GGG | - | chr4.1:39996659-39996678 | MS.gene050095:intron | 40.0% |
| ! | TAGGTGGAGTTTTCTGCATA+TGG | - | chr4.1:39997376-39997395 | MS.gene050095:CDS | 40.0% |
| ! | TAGTGGGTAGGAGTTGTATT+TGG | + | chr4.1:39997855-39997874 | None:intergenic | 40.0% |
| ! | TGGTTGGTTGCATGTTATCA+TGG | - | chr4.1:39996658-39996677 | MS.gene050095:intron | 40.0% |
| !! | CATTGCTGCATCTTTTGGAA+TGG | - | chr4.1:39997251-39997270 | MS.gene050095:CDS | 40.0% |
| !! | TGATCTCTTTTGAAGGTGGA+AGG | + | chr4.1:39997701-39997720 | None:intergenic | 40.0% |
| !!! | TTGCCTTTTTTATCCCTGGT+TGG | - | chr4.1:39996642-39996661 | MS.gene050095:intron | 40.0% |
| AACCTAAAGCTACACACAGC+CGG | - | chr4.1:39997225-39997244 | MS.gene050095:CDS | 45.0% | |
| AGAAAACTCCACCTAGGGTT+TGG | + | chr4.1:39997371-39997390 | None:intergenic | 45.0% | |
| AGCTTCAGGTCTTTCATGGA+TGG | - | chr4.1:39997608-39997627 | MS.gene050095:CDS | 45.0% | |
| CAACAGCTTCAGGTCTTTCA+TGG | - | chr4.1:39997604-39997623 | MS.gene050095:CDS | 45.0% | |
| CTCAGCAATGACATTGTCAG+TGG | + | chr4.1:39996980-39996999 | None:intergenic | 45.0% | |
| CTTGTTAATGGTACTGCTGC+TGG | - | chr4.1:39996521-39996540 | MS.gene050095:CDS | 45.0% | |
| GACCTATTAGGTCCACGTTA+TGG | - | chr4.1:39996332-39996351 | MS.gene050095:CDS | 45.0% | |
| GCAATTCTCCAAGCAGTGAA+AGG | + | chr4.1:39996626-39996645 | None:intergenic | 45.0% | |
| GCTTCAGGTCTTTCATGGAT+GGG | - | chr4.1:39997609-39997628 | MS.gene050095:CDS | 45.0% | |
| GGTTGCATCAACCAAGTCTT+AGG | - | chr4.1:39997772-39997791 | MS.gene050095:CDS | 45.0% | |
| GTCATCAGTAGCTTCACCAA+TGG | - | chr4.1:39996034-39996053 | MS.gene050095:CDS | 45.0% | |
| GTGGTATCAGTTGGAACCAT+TGG | + | chr4.1:39996053-39996072 | None:intergenic | 45.0% | |
| TCCAACTGAGAAGAGGATCA+TGG | + | chr4.1:39997439-39997458 | None:intergenic | 45.0% | |
| TCCATGATCCTCTTCTCAGT+TGG | - | chr4.1:39997435-39997454 | MS.gene050095:CDS | 45.0% | |
| TGGATGGGTGCAATGATTGT+TGG | - | chr4.1:39997624-39997643 | MS.gene050095:CDS | 45.0% | |
| TGGGTAGGAGTTGTATTTGG+TGG | + | chr4.1:39997852-39997871 | None:intergenic | 45.0% | |
| TTAAGGTTGTCCCGGATGAT+CGG | + | chr4.1:39996227-39996246 | None:intergenic | 45.0% | |
| TTAATGGTACTGCTGCTGGT+TGG | - | chr4.1:39996525-39996544 | MS.gene050095:CDS | 45.0% | |
| ! | AGGAAAGCACAACCATAACG+TGG | + | chr4.1:39996347-39996366 | None:intergenic | 45.0% |
| ! | TAATGGTACTGCTGCTGGTT+GGG | - | chr4.1:39996526-39996545 | MS.gene050095:CDS | 45.0% |
| ! | TTCTGAGAGAGGAAAACGTG+TGG | - | chr4.1:39997812-39997831 | MS.gene050095:CDS | 45.0% |
| !! | CTTGGTGCCTTACAGAAGAA+GGG | - | chr4.1:39996725-39996744 | MS.gene050095:intron | 45.0% |
| !! | GAGAATAGTCGTTCTGAGAG+AGG | - | chr4.1:39997801-39997820 | MS.gene050095:CDS | 45.0% |
| AACCTCACGAAATCCGACGT+TGG | - | chr4.1:39996245-39996264 | MS.gene050095:CDS | 50.0% | |
| ACTGGTGCAGGTGGAAACTT+TGG | - | chr4.1:39997537-39997556 | MS.gene050095:CDS | 50.0% | |
| CGTCGGATTTCGTGAGGTTA+AGG | + | chr4.1:39996244-39996263 | None:intergenic | 50.0% | |
| CTCTGGATCTTCCAAACCCT+AGG | - | chr4.1:39997357-39997376 | MS.gene050095:CDS | 50.0% | |
| CTTGTGCTCCAACTGAGAAG+AGG | + | chr4.1:39997446-39997465 | None:intergenic | 50.0% | |
| GAGGAAGACTATGGACACTC+TGG | - | chr4.1:39997340-39997359 | MS.gene050095:CDS | 50.0% | |
| GCAAGATTATTCGGCATGCG+AGG | - | chr4.1:39997321-39997340 | MS.gene050095:CDS | 50.0% | |
| GCTGATATTGAGGGTTCACC+GGG | - | chr4.1:39995969-39995988 | MS.gene050095:CDS | 50.0% | |
| GCTGCATGTGGTGCAACATT+TGG | - | chr4.1:39997465-39997484 | MS.gene050095:CDS | 50.0% | |
| GGCTGATATTGAGGGTTCAC+CGG | - | chr4.1:39995968-39995987 | MS.gene050095:CDS | 50.0% | |
| GTTGGGGTAATATGGGTGGT+GGG | - | chr4.1:39996543-39996562 | MS.gene050095:CDS | 50.0% | |
| TAAGGTTGTCCCGGATGATC+GGG | + | chr4.1:39996226-39996245 | None:intergenic | 50.0% | |
| TACCAACGTCGGATTTCGTG+AGG | + | chr4.1:39996250-39996269 | None:intergenic | 50.0% | |
| TCAGGTTTAACTGGTGCAGG+TGG | - | chr4.1:39997528-39997547 | MS.gene050095:CDS | 50.0% | |
| TCGTGAGGTTAAGGTTGTCC+CGG | + | chr4.1:39996235-39996254 | None:intergenic | 50.0% | |
| TCTGATGCATAACCGCCGAA+TGG | + | chr4.1:39997294-39997313 | None:intergenic | 50.0% | |
| TCTTCCAGTGACTCCATGCA+TGG | + | chr4.1:39996000-39996019 | None:intergenic | 50.0% | |
| TGGATCTTCCAAACCCTAGG+TGG | - | chr4.1:39997360-39997379 | MS.gene050095:CDS | 50.0% | |
| TTAGTTGCTCGTCCATTCGG+CGG | - | chr4.1:39997279-39997298 | MS.gene050095:CDS | 50.0% | |
| TTCCGGCTGTGTGTAGCTTT+AGG | + | chr4.1:39997230-39997249 | None:intergenic | 50.0% | |
| TTGGGGTAATATGGGTGGTG+GGG | - | chr4.1:39996544-39996563 | MS.gene050095:CDS | 50.0% | |
| ! | AAGGCACCAAGGTTACCATC+AGG | + | chr4.1:39996716-39996735 | None:intergenic | 50.0% |
| ! | AATGGTACTGCTGCTGGTTG+GGG | - | chr4.1:39996527-39996546 | MS.gene050095:CDS | 50.0% |
| ! | CCTTCTTCTGTAAGGCACCA+AGG | + | chr4.1:39996727-39996746 | None:intergenic | 50.0% |
| ! | GCAGGTGGAAACTTTGGTTC+CGG | - | chr4.1:39997543-39997562 | MS.gene050095:CDS | 50.0% |
| ! | GCTGCTGGTTGGGGTAATAT+GGG | - | chr4.1:39996536-39996555 | MS.gene050095:CDS | 50.0% |
| ! | GTGCTACTCCTTTCACTGCT+TGG | - | chr4.1:39996615-39996634 | MS.gene050095:intron | 50.0% |
| ! | TGCTGCTGGTTGGGGTAATA+TGG | - | chr4.1:39996535-39996554 | MS.gene050095:CDS | 50.0% |
| !! | AAATCCGACGTTGGTAACGC+TGG | - | chr4.1:39996254-39996273 | MS.gene050095:CDS | 50.0% |
| !! | CCTTGGTGCCTTACAGAAGA+AGG | - | chr4.1:39996724-39996743 | MS.gene050095:intron | 50.0% |
| ACTCCATGCATGGAGCTTCC+CGG | + | chr4.1:39995990-39996009 | None:intergenic | 55.0% | |
| AGCTCCATGCATGGAGTCAC+TGG | - | chr4.1:39995993-39996012 | MS.gene050095:CDS | 55.0% | |
| AGGAACATGCTACCCCACTG+TGG | + | chr4.1:39997681-39997700 | None:intergenic | 55.0% | |
| CGCCATTAGTCCCGATCATC+CGG | - | chr4.1:39996213-39996232 | MS.gene050095:CDS | 55.0% | |
| GACTCCAGCGTTACCAACGT+CGG | + | chr4.1:39996261-39996280 | None:intergenic | 55.0% | |
| GCCATTAGTCCCGATCATCC+GGG | - | chr4.1:39996214-39996233 | MS.gene050095:CDS | 55.0% | |
| GCTGGTTGGGGTAATATGGG+TGG | - | chr4.1:39996539-39996558 | MS.gene050095:CDS | 55.0% | |
| GGTTGGGGTAATATGGGTGG+TGG | - | chr4.1:39996542-39996561 | MS.gene050095:CDS | 55.0% | |
| GTTGGAGCACAAGCTGCATG+TGG | - | chr4.1:39997453-39997472 | MS.gene050095:CDS | 55.0% | |
| TCCCGGATGATCGGGACTAA+TGG | + | chr4.1:39996218-39996237 | None:intergenic | 55.0% | |
| TCGGCATGCGAGGAAGACTA+TGG | - | chr4.1:39997331-39997350 | MS.gene050095:CDS | 55.0% | |
| ! | TGGTAACGCTGGAGTCGCTT+CGG | - | chr4.1:39996265-39996284 | MS.gene050095:CDS | 55.0% |
| GCTGGAGTCGCTTCGGTTTC+AGG | - | chr4.1:39996272-39996291 | MS.gene050095:CDS | 60.0% | |
| TCACCGGGAAGCTCCATGCA+TGG | - | chr4.1:39995984-39996003 | MS.gene050095:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 39995966 | 39997875 | 39995966 | ID=MS.gene050095 |
| chr4.1 | mRNA | 39995966 | 39997875 | 39995966 | ID=MS.gene050095.t1;Parent=MS.gene050095 |
| chr4.1 | exon | 39997066 | 39997875 | 39997066 | ID=MS.gene050095.t1.exon1;Parent=MS.gene050095.t1 |
| chr4.1 | CDS | 39997066 | 39997875 | 39997066 | ID=cds.MS.gene050095.t1;Parent=MS.gene050095.t1 |
| chr4.1 | exon | 39996828 | 39996943 | 39996828 | ID=MS.gene050095.t1.exon2;Parent=MS.gene050095.t1 |
| chr4.1 | CDS | 39996828 | 39996943 | 39996828 | ID=cds.MS.gene050095.t1;Parent=MS.gene050095.t1 |
| chr4.1 | exon | 39995966 | 39996620 | 39995966 | ID=MS.gene050095.t1.exon3;Parent=MS.gene050095.t1 |
| chr4.1 | CDS | 39995966 | 39996620 | 39995966 | ID=cds.MS.gene050095.t1;Parent=MS.gene050095.t1 |
| Gene Sequence |
| Protein sequence |
