Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08894.t1 | XP_013446518.1 | 92 | 313 | 21 | 2 | 1 | 310 | 1 | 312 | 1.30E-164 | 589 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08894.t1 | A0A072U3X8 | 92.0 | 313 | 21 | 2 | 1 | 310 | 1 | 312 | 9.5e-165 | 589.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050623 | MS.gene08894 | -0.804567 | 2.03E-49 | -1.69E-46 |
MS.gene051245 | MS.gene08894 | 0.806566 | 7.73E-50 | -1.69E-46 |
MS.gene057451 | MS.gene08894 | -0.809842 | 1.55E-50 | -1.69E-46 |
MS.gene057452 | MS.gene08894 | -0.820026 | 8.52E-53 | -1.69E-46 |
MS.gene058182 | MS.gene08894 | 0.838438 | 2.88E-57 | -1.69E-46 |
MS.gene060297 | MS.gene08894 | 0.818078 | 2.37E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08894.t1 | MTR_8g080020 | 94.569 | 313 | 13 | 2 | 1 | 310 | 1 | 312 | 0.0 | 594 |
MS.gene08894.t1 | MTR_2g088950 | 40.574 | 244 | 125 | 6 | 75 | 304 | 103 | 340 | 5.93e-54 | 179 |
MS.gene08894.t1 | MTR_2g437670 | 40.574 | 244 | 125 | 6 | 75 | 304 | 103 | 340 | 8.35e-54 | 179 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08894.t1 | AT1G67660 | 65.934 | 273 | 81 | 3 | 49 | 309 | 33 | 305 | 4.97e-134 | 382 |
MS.gene08894.t1 | AT1G67660 | 65.934 | 273 | 81 | 3 | 49 | 309 | 62 | 334 | 1.03e-133 | 383 |
MS.gene08894.t1 | AT1G67660 | 65.934 | 273 | 81 | 3 | 49 | 309 | 83 | 355 | 1.33e-133 | 383 |
MS.gene08894.t1 | AT1G13810 | 36.032 | 247 | 138 | 5 | 75 | 306 | 60 | 301 | 2.54e-47 | 161 |
Find 69 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTATTACATGCCTCAAGTTC+AGG | 0.257165 | 4.3:-16739094 | MS.gene08894:CDS |
TCAGGGTCAAATGGAGATTA+TGG | 0.260537 | 4.3:-16739076 | MS.gene08894:CDS |
AGTTAAGTGTCCTTATAATA+AGG | 0.269945 | 4.3:-16739157 | MS.gene08894:CDS |
TTGTTAGAAATCGTGAATAT+TGG | 0.278665 | 4.3:-16738996 | MS.gene08894:CDS |
TTCAAAGAAATGCTATGAAT+TGG | 0.293866 | 4.3:-16739329 | MS.gene08894:CDS |
TTAGTACTGCATTAGGGTTT+TGG | 0.302003 | 4.3:-16739422 | MS.gene08894:CDS |
TGTTCTTGGTACCGGAATAT+TGG | 0.306883 | 4.3:-16739181 | MS.gene08894:CDS |
TCAGGCTTACCCTTATTATA+AGG | 0.309587 | 4.3:+16739147 | None:intergenic |
GCAAGGGAAGCTTTGTTGTT+GGG | 0.320750 | 4.3:-16738922 | MS.gene08894:CDS |
AACAACAAAGCTTCCCTTGC+CGG | 0.337209 | 4.3:+16738925 | None:intergenic |
ATGGGATTCTCAGAGAGTTT+TGG | 0.342835 | 4.3:-16738963 | MS.gene08894:CDS |
TCAAAGAAATGCTATGAATT+GGG | 0.356628 | 4.3:-16739328 | MS.gene08894:CDS |
AGCACATTTAGTACTGCATT+AGG | 0.371913 | 4.3:-16739429 | MS.gene08894:CDS |
GCGTCGCCTGACGGTGTTCT+TGG | 0.374201 | 4.3:-16739195 | MS.gene08894:CDS |
TGTTAGAAATCGTGAATATT+GGG | 0.374315 | 4.3:-16738995 | MS.gene08894:CDS |
TTCCGCAACGTTCGGAAGAA+TGG | 0.380577 | 4.3:-16739482 | MS.gene08894:CDS |
ACACTTAACTTCCAATATTC+CGG | 0.387205 | 4.3:+16739170 | None:intergenic |
AATGGGTTGATTTGTATTGT+TGG | 0.389762 | 4.3:-16739047 | MS.gene08894:CDS |
TTCCATGGCAAACCTGTCTC+AGG | 0.395522 | 4.3:+16739129 | None:intergenic |
ATTCGAAACAGTCTTATGAT+TGG | 0.396472 | 4.3:-16739224 | MS.gene08894:CDS |
GCACATTTAGTACTGCATTA+GGG | 0.406562 | 4.3:-16739428 | MS.gene08894:CDS |
TTGGTGGGAAAACGTGATTC+CGG | 0.412330 | 4.3:-16738944 | MS.gene08894:CDS |
CCTAGCAGAATTAAGCCATA+TGG | 0.413449 | 4.3:-16739615 | MS.gene08894:CDS |
GCCTCAAGTTCAGGGTCAAA+TGG | 0.417390 | 4.3:-16739085 | MS.gene08894:CDS |
GGCAAGGGAAGCTTTGTTGT+TGG | 0.439360 | 4.3:-16738923 | MS.gene08894:CDS |
GTTGTTGGGGTCTAAAGATC+AGG | 0.442016 | 4.3:-16738908 | MS.gene08894:CDS |
TTAATAATCAAAGAAGTTGT+TGG | 0.449938 | 4.3:+16739549 | None:intergenic |
CGAAATATAGTACTTCCATT+TGG | 0.450018 | 4.3:+16739021 | None:intergenic |
GGCTGATGTTCCGCAACGTT+CGG | 0.452606 | 4.3:-16739490 | MS.gene08894:CDS |
TGGTGAGGTAGTAGTACATA+TGG | 0.459125 | 4.3:+16739569 | None:intergenic |
GTTAAGTGTCCTTATAATAA+GGG | 0.460463 | 4.3:-16739156 | MS.gene08894:CDS |
CAAGGGAAGCTTTGTTGTTG+GGG | 0.465604 | 4.3:-16738921 | MS.gene08894:CDS |
TGGGAGGGAGGTGACTTCGA+TGG | 0.467844 | 4.3:-16739259 | MS.gene08894:CDS |
GGGAGGGAGGTGACTTCGAT+GGG | 0.473979 | 4.3:-16739258 | MS.gene08894:CDS |
TATTACATGCCTCAAGTTCA+GGG | 0.475534 | 4.3:-16739093 | MS.gene08894:CDS |
AGCATTTGCTTCACCGGCAC+CGG | 0.476435 | 4.3:-16739511 | MS.gene08894:CDS |
ATTTACAGCATTTGCTTCAC+CGG | 0.476975 | 4.3:-16739517 | MS.gene08894:CDS |
GCCTCTACACATAAATTGAC+TGG | 0.480024 | 4.3:-16738868 | MS.gene08894:CDS |
AATGGATATGAGAATTTCAT+CGG | 0.483975 | 4.3:-16739691 | MS.gene08894:CDS |
GAACGTTGCGGAACATCAGC+CGG | 0.496988 | 4.3:+16739492 | None:intergenic |
TGCGGAACATCAGCCGGTGC+CGG | 0.504036 | 4.3:+16739498 | None:intergenic |
AAACAGTCTTATGATTGGCT+TGG | 0.505920 | 4.3:-16739219 | MS.gene08894:CDS |
GTCAATTTATGTGTAGAGGC+AGG | 0.506154 | 4.3:+16738871 | None:intergenic |
AATAAGGGTAAGCCTGAGAC+AGG | 0.506865 | 4.3:-16739141 | MS.gene08894:CDS |
TTGTATTGTTGGACGCCAAA+TGG | 0.508428 | 4.3:-16739036 | MS.gene08894:CDS |
TCCATTTGACCCTGAACTTG+AGG | 0.510243 | 4.3:+16739084 | None:intergenic |
CTATTATGCAGAGAAATTGC+AGG | 0.517198 | 4.3:-16738802 | MS.gene08894:CDS |
GAATATTGGGATATAATACA+TGG | 0.523100 | 4.3:-16738982 | MS.gene08894:CDS |
CCATATGGCTTAATTCTGCT+AGG | 0.530559 | 4.3:+16739615 | None:intergenic |
TGGCTTGGCGCGTCGCCTGA+CGG | 0.530902 | 4.3:-16739204 | MS.gene08894:CDS |
AGAATGGTTCGCTCTTCGTA+AGG | 0.534956 | 4.3:-16739466 | MS.gene08894:CDS |
CCGGTACCAAGAACACCGTC+AGG | 0.549096 | 4.3:+16739189 | None:intergenic |
TCCAGTCAATTTATGTGTAG+AGG | 0.552337 | 4.3:+16738867 | None:intergenic |
CCTGACGGTGTTCTTGGTAC+CGG | 0.552937 | 4.3:-16739189 | MS.gene08894:CDS |
CAAAGAAATGCTATGAATTG+GGG | 0.562081 | 4.3:-16739327 | MS.gene08894:CDS |
GGAAAACGTGATTCCGGCAA+GGG | 0.564224 | 4.3:-16738938 | MS.gene08894:CDS |
ACTTGAGGCATGTAATAGAA+TGG | 0.565196 | 4.3:+16739099 | None:intergenic |
GAATCTAATCAAGCTAGAGT+TGG | 0.567061 | 4.3:+16739662 | None:intergenic |
GAAGCAAATGCTGTAAATGA+TGG | 0.578930 | 4.3:+16739522 | None:intergenic |
AGCCTGAGACAGGTTTGCCA+TGG | 0.592845 | 4.3:-16739131 | MS.gene08894:CDS |
TCTAGCTTGATTAGATTCAG+TGG | 0.596966 | 4.3:-16739657 | MS.gene08894:CDS |
AATCAAAGAAGTTGTTGGTG+AGG | 0.598502 | 4.3:+16739554 | None:intergenic |
AACCATTCTTCCGAACGTTG+CGG | 0.616608 | 4.3:+16739480 | None:intergenic |
GGGAAAACGTGATTCCGGCA+AGG | 0.625422 | 4.3:-16738939 | MS.gene08894:CDS |
GAATTGGGGAGTGCTTAATG+AGG | 0.644725 | 4.3:-16739313 | MS.gene08894:CDS |
TTGGGGAGTGCTTAATGAGG+CGG | 0.645877 | 4.3:-16739310 | MS.gene08894:CDS |
GTGGTCGTCGTGCTGAGTTG+TGG | 0.647045 | 4.3:-16739395 | MS.gene08894:CDS |
AATATTGGGATATAATACAT+GGG | 0.663115 | 4.3:-16738981 | MS.gene08894:CDS |
GCAAATGCTGTAAATGATGG+AGG | 0.672307 | 4.3:+16739525 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAGTATACAAAAATTACT+GGG | - | chr4.3:16739192-16739211 | MS.gene08894:CDS | 15.0% |
!! | AATATTGGGATATAATACAT+GGG | - | chr4.3:16739489-16739508 | MS.gene08894:CDS | 20.0% |
!! | TTAATAATCAAAGAAGTTGT+TGG | + | chr4.3:16738924-16738943 | None:intergenic | 20.0% |
!!! | GAAAAGTATACAAAAATTAC+TGG | - | chr4.3:16739191-16739210 | MS.gene08894:CDS | 20.0% |
! | AGTTAAGTGTCCTTATAATA+AGG | - | chr4.3:16739313-16739332 | MS.gene08894:CDS | 25.0% |
! | GAATATTGGGATATAATACA+TGG | - | chr4.3:16739488-16739507 | MS.gene08894:CDS | 25.0% |
! | GTTAAGTGTCCTTATAATAA+GGG | - | chr4.3:16739314-16739333 | MS.gene08894:CDS | 25.0% |
! | TCAAAGAAATGCTATGAATT+GGG | - | chr4.3:16739142-16739161 | MS.gene08894:CDS | 25.0% |
! | TGTTAGAAATCGTGAATATT+GGG | - | chr4.3:16739475-16739494 | MS.gene08894:CDS | 25.0% |
! | TTCAAAGAAATGCTATGAAT+TGG | - | chr4.3:16739141-16739160 | MS.gene08894:CDS | 25.0% |
! | TTGTTAGAAATCGTGAATAT+TGG | - | chr4.3:16739474-16739493 | MS.gene08894:CDS | 25.0% |
!! | CTAAAATGATCTTTTCCATA+TGG | + | chr4.3:16738873-16738892 | None:intergenic | 25.0% |
ACACTTAACTTCCAATATTC+CGG | + | chr4.3:16739303-16739322 | None:intergenic | 30.0% | |
AGTATACAAAAATTACTGGG+AGG | - | chr4.3:16739195-16739214 | MS.gene08894:CDS | 30.0% | |
CAAAGAAATGCTATGAATTG+GGG | - | chr4.3:16739143-16739162 | MS.gene08894:CDS | 30.0% | |
CGAAATATAGTACTTCCATT+TGG | + | chr4.3:16739452-16739471 | None:intergenic | 30.0% | |
GTATACAAAAATTACTGGGA+GGG | - | chr4.3:16739196-16739215 | MS.gene08894:CDS | 30.0% | |
! | ATTCGAAACAGTCTTATGAT+TGG | - | chr4.3:16739246-16739265 | MS.gene08894:CDS | 30.0% |
! | GGAGATTATGGATTTTGAAT+GGG | - | chr4.3:16739406-16739425 | MS.gene08894:CDS | 30.0% |
! | TGGAGATTATGGATTTTGAA+TGG | - | chr4.3:16739405-16739424 | MS.gene08894:CDS | 30.0% |
!! | AATGGGTTGATTTGTATTGT+TGG | - | chr4.3:16739423-16739442 | MS.gene08894:CDS | 30.0% |
AATCAAAGAAGTTGTTGGTG+AGG | + | chr4.3:16738919-16738938 | None:intergenic | 35.0% | |
ACTTGAGGCATGTAATAGAA+TGG | + | chr4.3:16739374-16739393 | None:intergenic | 35.0% | |
AGCACATTTAGTACTGCATT+AGG | - | chr4.3:16739041-16739060 | MS.gene08894:CDS | 35.0% | |
ATTTACAGCATTTGCTTCAC+CGG | - | chr4.3:16738953-16738972 | MS.gene08894:CDS | 35.0% | |
CTATTATGCAGAGAAATTGC+AGG | - | chr4.3:16739668-16739687 | MS.gene08894:CDS | 35.0% | |
GAAGCAAATGCTGTAAATGA+TGG | + | chr4.3:16738951-16738970 | None:intergenic | 35.0% | |
GAATCTAATCAAGCTAGAGT+TGG | + | chr4.3:16738811-16738830 | None:intergenic | 35.0% | |
GCACATTTAGTACTGCATTA+GGG | - | chr4.3:16739042-16739061 | MS.gene08894:CDS | 35.0% | |
TATTACATGCCTCAAGTTCA+GGG | - | chr4.3:16739377-16739396 | MS.gene08894:CDS | 35.0% | |
TCAGGCTTACCCTTATTATA+AGG | + | chr4.3:16739326-16739345 | None:intergenic | 35.0% | |
TCCAGTCAATTTATGTGTAG+AGG | + | chr4.3:16739606-16739625 | None:intergenic | 35.0% | |
! | AAACAGTCTTATGATTGGCT+TGG | - | chr4.3:16739251-16739270 | MS.gene08894:CDS | 35.0% |
! | TAGAATGGCATAGTTTTCCA+TGG | + | chr4.3:16739359-16739378 | None:intergenic | 35.0% |
! | TCTAGCTTGATTAGATTCAG+TGG | - | chr4.3:16738813-16738832 | MS.gene08894:CDS | 35.0% |
! | TTAGTACTGCATTAGGGTTT+TGG | - | chr4.3:16739048-16739067 | MS.gene08894:CDS | 35.0% |
CCATATGGCTTAATTCTGCT+AGG | + | chr4.3:16738858-16738877 | None:intergenic | 40.0% | |
CCTAGCAGAATTAAGCCATA+TGG | - | chr4.3:16738855-16738874 | MS.gene08894:CDS | 40.0% | |
CTATTACATGCCTCAAGTTC+AGG | - | chr4.3:16739376-16739395 | MS.gene08894:CDS | 40.0% | |
GCAAATGCTGTAAATGATGG+AGG | + | chr4.3:16738948-16738967 | None:intergenic | 40.0% | |
GCCTCTACACATAAATTGAC+TGG | - | chr4.3:16739602-16739621 | MS.gene08894:CDS | 40.0% | |
GTCAATTTATGTGTAGAGGC+AGG | + | chr4.3:16739602-16739621 | None:intergenic | 40.0% | |
TACAAAAATTACTGGGAGGG+AGG | - | chr4.3:16739199-16739218 | MS.gene08894:CDS | 40.0% | |
TCAGGGTCAAATGGAGATTA+TGG | - | chr4.3:16739394-16739413 | MS.gene08894:CDS | 40.0% | |
TGGTGAGGTAGTAGTACATA+TGG | + | chr4.3:16738904-16738923 | None:intergenic | 40.0% | |
TTGTATTGTTGGACGCCAAA+TGG | - | chr4.3:16739434-16739453 | MS.gene08894:CDS | 40.0% | |
! | ATGGGATTCTCAGAGAGTTT+TGG | - | chr4.3:16739507-16739526 | MS.gene08894:CDS | 40.0% |
! | TGTTCTTGGTACCGGAATAT+TGG | - | chr4.3:16739289-16739308 | MS.gene08894:CDS | 40.0% |
!! | GATTCTCAGAGAGTTTTGGT+GGG | - | chr4.3:16739511-16739530 | MS.gene08894:CDS | 40.0% |
!!! | ACTGCATTAGGGTTTTGGAA+AGG | - | chr4.3:16739053-16739072 | MS.gene08894:CDS | 40.0% |
AACAACAAAGCTTCCCTTGC+CGG | + | chr4.3:16739548-16739567 | None:intergenic | 45.0% | |
AACCATTCTTCCGAACGTTG+CGG | + | chr4.3:16738993-16739012 | None:intergenic | 45.0% | |
AATAAGGGTAAGCCTGAGAC+AGG | - | chr4.3:16739329-16739348 | MS.gene08894:CDS | 45.0% | |
AGAATGGTTCGCTCTTCGTA+AGG | - | chr4.3:16739004-16739023 | MS.gene08894:CDS | 45.0% | |
GTTGTTGGGGTCTAAAGATC+AGG | - | chr4.3:16739562-16739581 | MS.gene08894:CDS | 45.0% | |
TCCATTTGACCCTGAACTTG+AGG | + | chr4.3:16739389-16739408 | None:intergenic | 45.0% | |
TTGGTGGGAAAACGTGATTC+CGG | - | chr4.3:16739526-16739545 | MS.gene08894:CDS | 45.0% | |
!! | CAAGGGAAGCTTTGTTGTTG+GGG | - | chr4.3:16739549-16739568 | MS.gene08894:CDS | 45.0% |
!! | GAATTGGGGAGTGCTTAATG+AGG | - | chr4.3:16739157-16739176 | MS.gene08894:CDS | 45.0% |
!! | GCAAGGGAAGCTTTGTTGTT+GGG | - | chr4.3:16739548-16739567 | MS.gene08894:CDS | 45.0% |
!! | GGATTCTCAGAGAGTTTTGG+TGG | - | chr4.3:16739510-16739529 | MS.gene08894:CDS | 45.0% |
!!! | GCATTAGGGTTTTGGAAAGG+TGG | - | chr4.3:16739056-16739075 | MS.gene08894:CDS | 45.0% |
GCCTCAAGTTCAGGGTCAAA+TGG | - | chr4.3:16739385-16739404 | MS.gene08894:CDS | 50.0% | |
GGAAAACGTGATTCCGGCAA+GGG | - | chr4.3:16739532-16739551 | MS.gene08894:CDS | 50.0% | |
TTCCATGGCAAACCTGTCTC+AGG | + | chr4.3:16739344-16739363 | None:intergenic | 50.0% | |
TTCCGCAACGTTCGGAAGAA+TGG | - | chr4.3:16738988-16739007 | MS.gene08894:CDS | 50.0% | |
!! | GGCAAGGGAAGCTTTGTTGT+TGG | - | chr4.3:16739547-16739566 | MS.gene08894:CDS | 50.0% |
!! | TTGGGGAGTGCTTAATGAGG+CGG | - | chr4.3:16739160-16739179 | MS.gene08894:CDS | 50.0% |
AGCATTTGCTTCACCGGCAC+CGG | - | chr4.3:16738959-16738978 | MS.gene08894:CDS | 55.0% | |
AGCCTGAGACAGGTTTGCCA+TGG | - | chr4.3:16739339-16739358 | MS.gene08894:CDS | 55.0% | |
CCTGACGGTGTTCTTGGTAC+CGG | - | chr4.3:16739281-16739300 | MS.gene08894:CDS | 55.0% | |
GAACGTTGCGGAACATCAGC+CGG | + | chr4.3:16738981-16739000 | None:intergenic | 55.0% | |
GGCTGATGTTCCGCAACGTT+CGG | - | chr4.3:16738980-16738999 | MS.gene08894:CDS | 55.0% | |
GGGAAAACGTGATTCCGGCA+AGG | - | chr4.3:16739531-16739550 | MS.gene08894:CDS | 55.0% | |
CCGGTACCAAGAACACCGTC+AGG | + | chr4.3:16739284-16739303 | None:intergenic | 60.0% | |
GGGAGGGAGGTGACTTCGAT+GGG | - | chr4.3:16739212-16739231 | MS.gene08894:CDS | 60.0% | |
GTGGTCGTCGTGCTGAGTTG+TGG | - | chr4.3:16739075-16739094 | MS.gene08894:CDS | 60.0% | |
TGGGAGGGAGGTGACTTCGA+TGG | - | chr4.3:16739211-16739230 | MS.gene08894:CDS | 60.0% | |
GCGTCGCCTGACGGTGTTCT+TGG | - | chr4.3:16739275-16739294 | MS.gene08894:CDS | 65.0% | |
TGCGGAACATCAGCCGGTGC+CGG | + | chr4.3:16738975-16738994 | None:intergenic | 65.0% | |
! | TGGCTTGGCGCGTCGCCTGA+CGG | - | chr4.3:16739266-16739285 | MS.gene08894:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 16738780 | 16739712 | 16738780 | ID=MS.gene08894 |
chr4.3 | mRNA | 16738780 | 16739712 | 16738780 | ID=MS.gene08894.t1;Parent=MS.gene08894 |
chr4.3 | exon | 16738780 | 16739712 | 16738780 | ID=MS.gene08894.t1.exon1;Parent=MS.gene08894.t1 |
chr4.3 | CDS | 16738780 | 16739712 | 16738780 | ID=cds.MS.gene08894.t1;Parent=MS.gene08894.t1 |
Gene Sequence |
Protein sequence |