AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051245


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051245.t1 MTR_7g065100 97.980 99 2 0 1 99 1 99 8.54e-66 193
MS.gene051245.t1 MTR_8g036205 96.512 86 3 0 1 86 1 86 3.47e-53 162
MS.gene051245.t1 MTR_7g104930 38.028 71 35 1 10 80 9 70 1.06e-12 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051245.t1 AT2G03870 91.837 98 8 0 1 98 1 98 4.16e-61 181
MS.gene051245.t1 AT2G03870 91.837 98 8 0 1 98 1 98 4.16e-61 181
MS.gene051245.t1 AT2G23930 42.254 71 32 2 10 80 9 70 3.72e-13 59.7
MS.gene051245.t1 AT3G11500 39.437 71 34 1 10 80 9 70 2.23e-12 57.8
MS.gene051245.t1 AT3G11500 39.437 71 34 1 10 80 9 70 2.23e-12 57.8

Find 27 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGTGACAGGTACTCTAAA+AGG 0.295589 8.2:+62938553 MS.gene051245:intron
TTAGCAAAATTTGTTGATAA+AGG 0.301879 8.2:+62936515 MS.gene051245:CDS
TTGTCGCAATGCAGGTTTGC+AGG 0.321708 8.2:+62940372 MS.gene051245:intron
TACAATTAAGCCAAGACTTC+TGG 0.324979 8.2:-62939699 None:intergenic
GGTGTTCAAGTCAAGCTTAC+TGG 0.353916 8.2:+62936536 MS.gene051245:CDS
TCTTGAGGCAGATGGGGCCT+AGG 0.394260 8.2:+62940454 MS.gene051245:CDS
CCAGGACAAGGTTAAGTAAC+TGG 0.396790 8.2:-62938582 None:intergenic
TGGGAGGAAAGAAACTGTTC+TGG 0.428213 8.2:+62936490 MS.gene051245:CDS
GCCCCATCTGCCTCAAGAAA+GGG 0.437926 8.2:-62940449 None:intergenic
GGCCCCATCTGCCTCAAGAA+AGG 0.483618 8.2:-62940450 None:intergenic
AACCCCTTTCTTGAGGCAGA+TGG 0.486249 8.2:+62940446 MS.gene051245:CDS
ACCCCTTTCTTGAGGCAGAT+GGG 0.488188 8.2:+62940447 MS.gene051245:CDS
CCCCTTTCTTGAGGCAGATG+GGG 0.488254 8.2:+62940448 MS.gene051245:CDS
CCAGTTACTTAACCTTGTCC+TGG 0.506664 8.2:+62938582 MS.gene051245:CDS
TGTCGCAATGCAGGTTTGCA+GGG 0.521696 8.2:+62940373 MS.gene051245:intron
TAGTGACAGGTACTCTAAAA+GGG 0.532671 8.2:+62938554 MS.gene051245:intron
ACAGATCAGACCAGAAGTCT+TGG 0.544721 8.2:+62939689 MS.gene051245:CDS
AAGCTTACTGGTGGCAGACA+AGG 0.544738 8.2:+62936548 MS.gene051245:CDS
AAAACTCAACAGCTTCATCC+AGG 0.561824 8.2:-62938600 None:intergenic
ATGCTTGTGTCGCCAACTGA+TGG 0.586363 8.2:+62940407 MS.gene051245:CDS
GTCGCAATGCAGGTTTGCAG+GGG 0.591955 8.2:+62940374 MS.gene051245:intron
GATTGCAAACCCCTTTCTTG+AGG 0.598586 8.2:+62940439 MS.gene051245:CDS
TGTGTCGCCAACTGATGGTA+CGG 0.598668 8.2:+62940412 MS.gene051245:CDS
ATCTCGTCCGTACCATCAGT+TGG 0.614027 8.2:-62940419 None:intergenic
CCCCATCTGCCTCAAGAAAG+GGG 0.629232 8.2:-62940448 None:intergenic
CAACAGCTTCATCCAGGACA+AGG 0.654174 8.2:-62938594 None:intergenic
GTTCAAGTCAAGCTTACTGG+TGG 0.669583 8.2:+62936539 MS.gene051245:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATAAAAAAGAGAA+AGG - chr8.2:62936589-62936608 None:intergenic 10.0%
!! ATACATTCATATAATAAATA+GGG + chr8.2:62936664-62936683 MS.gene051245:intron 10.0%
!! TAAAATAAAGAAAAGAAATT+AGG - chr8.2:62936460-62936479 None:intergenic 10.0%
!! TTGATTTAACAATAAATTTA+AGG + chr8.2:62937208-62937227 MS.gene051245:intron 10.0%
!!! AAATTTTTTTATTCAAAAGA+TGG - chr8.2:62937560-62937579 None:intergenic 10.0%
!! ATGTTAAGAAAAAAAAAACA+TGG - chr8.2:62938657-62938676 None:intergenic 15.0%
!! GATACATTCATATAATAAAT+AGG + chr8.2:62936663-62936682 MS.gene051245:intron 15.0%
!! TATTTATTTCAATGTGTTAT+AGG - chr8.2:62938759-62938778 None:intergenic 15.0%
!! TTTAAGAAAATGAAAATGTT+TGG - chr8.2:62937435-62937454 None:intergenic 15.0%
!!! AAATGTTTTCTTATTTGTTT+TGG + chr8.2:62939188-62939207 MS.gene051245:intron 15.0%
!!! CAAAATTCATATATTTGTTT+TGG - chr8.2:62940297-62940316 None:intergenic 15.0%
!!! GTTTTTTTTGTTTTGTTTTA+AGG + chr8.2:62937942-62937961 MS.gene051245:intron 15.0%
!!! TTATGTTTTTAAAAAAGAGA+AGG - chr8.2:62939746-62939765 None:intergenic 15.0%
!!! TTGATTTGCTTTTAATATTA+TGG + chr8.2:62937702-62937721 MS.gene051245:intron 15.0%
!!! TTTATTTTATTTTTCAGTCT+GGG + chr8.2:62936471-62936490 MS.gene051245:intron 15.0%
!!! TTTGTTTTTGAAGAAAAAAA+GGG + chr8.2:62938847-62938866 MS.gene051245:intron 15.0%
!! AAACAAAAAAAACATACACA+AGG - chr8.2:62937935-62937954 None:intergenic 20.0%
!! AAACAAAAAAATGTCAACTT+AGG - chr8.2:62939012-62939031 None:intergenic 20.0%
!! AAACCTTGTTAAAATATAGA+AGG + chr8.2:62938908-62938927 MS.gene051245:intron 20.0%
!! AAAGTAAACATTGAAGATTA+TGG - chr8.2:62938494-62938513 None:intergenic 20.0%
!! AATAATAAACTTGACATGAA+AGG - chr8.2:62939364-62939383 None:intergenic 20.0%
!! AATGTAAAATGATACATGTT+TGG + chr8.2:62937168-62937187 MS.gene051245:intron 20.0%
!! AGAATTGAATTTATGATGTT+TGG - chr8.2:62937323-62937342 None:intergenic 20.0%
!! ATTAAAGCTAAATATACACA+AGG - chr8.2:62939296-62939315 None:intergenic 20.0%
!! ATTCATATAATAAATAGGGT+TGG + chr8.2:62936668-62936687 MS.gene051245:intron 20.0%
!! ATTCCTTATTGATAAAACAT+TGG + chr8.2:62939817-62939836 MS.gene051245:intron 20.0%
!! CAATAAACATAAAGTAAGTT+TGG - chr8.2:62938397-62938416 None:intergenic 20.0%
!! GAATTGAATTTATGATGTTT+GGG - chr8.2:62937322-62937341 None:intergenic 20.0%
!! TATTGATAAAACATTGGAAA+TGG + chr8.2:62939823-62939842 MS.gene051245:intron 20.0%
!! TTAAAGCTAAATATACACAA+GGG - chr8.2:62939295-62939314 None:intergenic 20.0%
!!! AAAATAAAACACATGGATTT+TGG - chr8.2:62939636-62939655 None:intergenic 20.0%
!!! AACAAATATATGAATTTTGC+TGG + chr8.2:62940298-62940317 MS.gene051245:intron 20.0%
!!! AACTAAAAGTGATTTGTTTT+TGG - chr8.2:62937006-62937025 None:intergenic 20.0%
!!! ACAAATATATGAATTTTGCT+GGG + chr8.2:62940299-62940318 MS.gene051245:intron 20.0%
!!! ACTAAAAGTGATTTGTTTTT+GGG - chr8.2:62937005-62937024 None:intergenic 20.0%
!!! AGCTTTTTATCTGAAATAAT+TGG + chr8.2:62938001-62938020 MS.gene051245:intron 20.0%
!!! ATAATTGATTTTGACATGTT+TGG - chr8.2:62937385-62937404 None:intergenic 20.0%
!!! CTTTATTTTATTTTTCAGTC+TGG + chr8.2:62936470-62936489 MS.gene051245:intron 20.0%
!!! CTTTGTTTTTGAAGAAAAAA+AGG + chr8.2:62938846-62938865 MS.gene051245:intron 20.0%
!!! GCTTTTTATCTGAAATAATT+GGG + chr8.2:62938002-62938021 MS.gene051245:intron 20.0%
!!! TCTTATCATTAAATTGATTC+TGG + chr8.2:62936620-62936639 MS.gene051245:intron 20.0%
!!! TTAGCAAAATTTGTTGATAA+AGG + chr8.2:62936515-62936534 MS.gene051245:CDS 20.0%
!!! TTATGGATATTCTTATTTGT+AGG + chr8.2:62937719-62937738 MS.gene051245:intron 20.0%
!!! TTTCCAATGTTTTATCAATA+AGG - chr8.2:62939823-62939842 None:intergenic 20.0%
!!! TTTCCTTCTATATTTTAACA+AGG - chr8.2:62938914-62938933 None:intergenic 20.0%
! AAAATGAAAATGTTTGGATG+AGG - chr8.2:62937429-62937448 None:intergenic 25.0%
! AAAGTTCATCTAATTCATTC+AGG + chr8.2:62938806-62938825 MS.gene051245:intron 25.0%
! AAATACAGCTTGTATAGAAA+GGG + chr8.2:62938774-62938793 MS.gene051245:intron 25.0%
! AAATGAAAATGTTTGGATGA+GGG - chr8.2:62937428-62937447 None:intergenic 25.0%
! AAGTAAGATAAATATGCCAA+AGG - chr8.2:62936391-62936410 None:intergenic 25.0%
! AAGTTCATCTAATTCATTCA+GGG + chr8.2:62938807-62938826 MS.gene051245:intron 25.0%
! AATAATTGCTCTATTTGGAT+TGG + chr8.2:62938139-62938158 MS.gene051245:intron 25.0%
! AATACTTGTTTCAGAACTTA+TGG + chr8.2:62938195-62938214 MS.gene051245:intron 25.0%
! ATAATTGCTCTATTTGGATT+GGG + chr8.2:62938140-62938159 MS.gene051245:intron 25.0%
! ATGATCAGTACTAGAAAAAA+GGG + chr8.2:62940050-62940069 MS.gene051245:intron 25.0%
! ATTCACTCAAAATCAATTCT+CGG - chr8.2:62936733-62936752 None:intergenic 25.0%
! CAAAATCAATTATACATGTG+TGG + chr8.2:62937392-62937411 MS.gene051245:intron 25.0%
! CACAGTTAATAACATACATA+AGG - chr8.2:62937973-62937992 None:intergenic 25.0%
! CAGATGAATAGATAAGAAAA+GGG + chr8.2:62939909-62939928 MS.gene051245:intron 25.0%
! GATGAAATAATTGCTCTATT+TGG + chr8.2:62938134-62938153 MS.gene051245:intron 25.0%
! GGCTTAAAGTAATTTATGTT+TGG + chr8.2:62936641-62936660 MS.gene051245:intron 25.0%
! TAAATACAGCTTGTATAGAA+AGG + chr8.2:62938773-62938792 MS.gene051245:intron 25.0%
! TACAACAAAACAAATGTCTT+GGG - chr8.2:62940105-62940124 None:intergenic 25.0%
! TCAGATGAATAGATAAGAAA+AGG + chr8.2:62939908-62939927 MS.gene051245:intron 25.0%
! TGATTCTGTAAAATTGATTG+TGG + chr8.2:62936753-62936772 MS.gene051245:intron 25.0%
! TTGAAAAAATAAGTACGAGT+AGG - chr8.2:62939496-62939515 None:intergenic 25.0%
!! AAACGAGAGATATTCTAAAA+AGG + chr8.2:62938258-62938277 MS.gene051245:intron 25.0%
!! AATGTTTACTTTAGAGATGA+GGG + chr8.2:62938502-62938521 MS.gene051245:intron 25.0%
!! AATTCAAATTTTGCCAAGAA+TGG - chr8.2:62940163-62940182 None:intergenic 25.0%
!! AATTTGTCACAAAGATGTTT+TGG + chr8.2:62939852-62939871 MS.gene051245:intron 25.0%
!! ATGGTTCTTTCAATTTTCAA+TGG + chr8.2:62938438-62938457 MS.gene051245:intron 25.0%
!! ATTCAAATTTTGCCAAGAAT+GGG - chr8.2:62940162-62940181 None:intergenic 25.0%
!! CAAGTAAAATCAATTTTGGA+GGG - chr8.2:62936897-62936916 None:intergenic 25.0%
!! GCTTCAAGTAAAATCAATTT+TGG - chr8.2:62936901-62936920 None:intergenic 25.0%
!! GTATTTTGTAGAATTGCTTT+TGG - chr8.2:62937043-62937062 None:intergenic 25.0%
!! TCAAGTAAAATCAATTTTGG+AGG - chr8.2:62936898-62936917 None:intergenic 25.0%
!! TTAATACAATTCTTTGCTGT+GGG + chr8.2:62938112-62938131 MS.gene051245:intron 25.0%
!!! ATTTGTTTTGTTGTACAAGT+AGG + chr8.2:62940110-62940129 MS.gene051245:intron 25.0%
!!! CTAAAAGTGATTTGTTTTTG+GGG - chr8.2:62937004-62937023 None:intergenic 25.0%
!!! GTGAGTTTTTCAAATTGTAA+GGG + chr8.2:62938024-62938043 MS.gene051245:intron 25.0%
!!! GTTTTTAAAAAAGAGAAGGT+GGG - chr8.2:62939742-62939761 None:intergenic 25.0%
!!! TCTATTTTAAGAGTGAAACT+AGG + chr8.2:62939461-62939480 MS.gene051245:intron 25.0%
!!! TGTTTTTAAAAAAGAGAAGG+TGG - chr8.2:62939743-62939762 None:intergenic 25.0%
!!! TTTCCTATTGAACCATTTTT+GGG + chr8.2:62938053-62938072 MS.gene051245:intron 25.0%
!!! TTTTAATTCATCACCCATTT+TGG - chr8.2:62939097-62939116 None:intergenic 25.0%
AAGGGAAAACACTTACTAAT+TGG + chr8.2:62939927-62939946 MS.gene051245:intron 30.0%
ACAACCTTGTAAAATCATCT+CGG + chr8.2:62939430-62939449 MS.gene051245:intron 30.0%
ACAATATTACCTAAGCACTA+AGG + chr8.2:62939043-62939062 MS.gene051245:intron 30.0%
AGAAAAAAAAAACATGGAGC+TGG - chr8.2:62938651-62938670 None:intergenic 30.0%
AGTTAAAGCAGTATCAATGT+GGG - chr8.2:62939156-62939175 None:intergenic 30.0%
CAATATTACCTAAGCACTAA+GGG + chr8.2:62939044-62939063 MS.gene051245:intron 30.0%
CAGCACAAAAATAAAACACA+TGG - chr8.2:62939643-62939662 None:intergenic 30.0%
CTACAATTTCTAACTGTGTT+TGG + chr8.2:62936786-62936805 MS.gene051245:intron 30.0%
CTTAATACAATTCTTTGCTG+TGG + chr8.2:62938111-62938130 MS.gene051245:intron 30.0%
GATGATCAGTACTAGAAAAA+AGG + chr8.2:62940049-62940068 MS.gene051245:intron 30.0%
GTACAACAAAACAAATGTCT+TGG - chr8.2:62940106-62940125 None:intergenic 30.0%
GTTTGCTTGCAAATCTTTAT+TGG + chr8.2:62939968-62939987 MS.gene051245:intron 30.0%
TAAAAAAGAGAAAGGTGAGT+TGG - chr8.2:62936581-62936600 None:intergenic 30.0%
TTATAGGAAAGATGAAGTCA+TGG - chr8.2:62938743-62938762 None:intergenic 30.0%
TTCCAAAATTTCATCACCTT+TGG + chr8.2:62936372-62936391 MS.gene051245:intron 30.0%
! ACTATATAGTTACTTTGCAG+AGG - chr8.2:62939546-62939565 None:intergenic 30.0%
! ATATTCTAAAAAGGTTGAGG+TGG + chr8.2:62938267-62938286 MS.gene051245:intron 30.0%
! ATGTTTACTTTAGAGATGAG+GGG + chr8.2:62938503-62938522 MS.gene051245:intron 30.0%
! ATTTGTTGAATTGTAGTGAC+AGG + chr8.2:62938541-62938560 MS.gene051245:intron 30.0%
! CAATGTTTACTTTAGAGATG+AGG + chr8.2:62938501-62938520 MS.gene051245:intron 30.0%
! CTATATAGTTACTTTGCAGA+GGG - chr8.2:62939545-62939564 None:intergenic 30.0%
! CTTTCCTATTGAACCATTTT+TGG + chr8.2:62938052-62938071 MS.gene051245:intron 30.0%
! GAGATATTCTAAAAAGGTTG+AGG + chr8.2:62938264-62938283 MS.gene051245:intron 30.0%
! TTCAAATTTTGCCAAGAATG+GGG - chr8.2:62940161-62940180 None:intergenic 30.0%
!! GGTGAGTTTTTCAAATTGTA+AGG + chr8.2:62938023-62938042 MS.gene051245:intron 30.0%
!! TTCCTATTGAACCATTTTTG+GGG + chr8.2:62938054-62938073 MS.gene051245:intron 30.0%
!! TTTTCAATGGATTCTTGTCT+TGG + chr8.2:62938451-62938470 MS.gene051245:intron 30.0%
!!! AAGCTACAATTTGTTGCTTT+TGG - chr8.2:62937253-62937272 None:intergenic 30.0%
!!! ATTTTATTTTTCAGTCTGGG+AGG + chr8.2:62936474-62936493 MS.gene051245:intron 30.0%
!!! TAGGTCAATATGTCTTGTTT+TGG + chr8.2:62937738-62937757 MS.gene051245:intron 30.0%
AATTCTTGTAGAAGCTGAAC+TGG - chr8.2:62937097-62937116 None:intergenic 35.0%
AGAGTCAAAAGTGATTCTAG+AGG - chr8.2:62937350-62937369 None:intergenic 35.0%
CACTTACTAATTGGAACTGA+TGG + chr8.2:62939936-62939955 MS.gene051245:intron 35.0%
GAAAGTTCAGTCATGCAATA+TGG + chr8.2:62939250-62939269 MS.gene051245:intron 35.0%
GAGTTAAAGCAGTATCAATG+TGG - chr8.2:62939157-62939176 None:intergenic 35.0%
TAAACGTTTGTTCGCAGTTA+TGG + chr8.2:62938228-62938247 MS.gene051245:intron 35.0%
TAACTGCGAACAAACGTTTA+AGG - chr8.2:62938228-62938247 None:intergenic 35.0%
TACAATTAAGCCAAGACTTC+TGG - chr8.2:62939702-62939721 None:intergenic 35.0%
TACACCTCGAAAATCAATTC+TGG - chr8.2:62936829-62936848 None:intergenic 35.0%
TACCCCAAAAATGGTTCAAT+AGG - chr8.2:62938059-62938078 None:intergenic 35.0%
! TAGTGACAGGTACTCTAAAA+GGG + chr8.2:62938554-62938573 MS.gene051245:intron 35.0%
! TGCCAAAGGTGATGAAATTT+TGG - chr8.2:62936377-62936396 None:intergenic 35.0%
! TGTAGTTTTCAGTGGATCAT+CGG - chr8.2:62939672-62939691 None:intergenic 35.0%
! TTTGCCGAGATGATTTTACA+AGG - chr8.2:62939437-62939456 None:intergenic 35.0%
!! AGAATCACTTTTGACTCTCT+AGG + chr8.2:62937352-62937371 MS.gene051245:intron 35.0%
!! GAAGCTGTTGAGTTTTTAAG+AGG + chr8.2:62938607-62938626 MS.gene051245:CDS 35.0%
!! TTCTAGTACTGATCATCATG+TGG - chr8.2:62940046-62940065 None:intergenic 35.0%
!!! AACCATTTTTGGGGTATTCT+TGG + chr8.2:62938063-62938082 MS.gene051245:intron 35.0%
AAAACTCAACAGCTTCATCC+AGG - chr8.2:62938603-62938622 None:intergenic 40.0%
ACATGTGTCTTTGCAGTGTT+TGG + chr8.2:62937460-62937479 MS.gene051245:intron 40.0%
CACCAAGAATACCCCAAAAA+TGG - chr8.2:62938068-62938087 None:intergenic 40.0%
CATTCAGGGCATATGATTGT+TGG + chr8.2:62938821-62938840 MS.gene051245:intron 40.0%
GAACCATAGCATGAACACAA+AGG - chr8.2:62938425-62938444 None:intergenic 40.0%
GTAAAAGTCCCTTAGTGCTT+AGG - chr8.2:62939055-62939074 None:intergenic 40.0%
GTAGTGACAGGTACTCTAAA+AGG + chr8.2:62938553-62938572 MS.gene051245:intron 40.0%
TCAGTACTAGAAAAAAGGGC+AGG + chr8.2:62940054-62940073 MS.gene051245:intron 40.0%
TCTCCTTTGTGTTCATGCTA+TGG + chr8.2:62938419-62938438 MS.gene051245:intron 40.0%
TGGCTTTCGCTATCACAATT+TGG - chr8.2:62939077-62939096 None:intergenic 40.0%
TGTTTGGTATCTGTGTCTGT+CGG + chr8.2:62937476-62937495 MS.gene051245:intron 40.0%
! CTCTATTTGGATTGGGTTCT+AGG + chr8.2:62938147-62938166 MS.gene051245:intron 40.0%
! GTAGTTTTCAGTGGATCATC+GGG - chr8.2:62939671-62939690 None:intergenic 40.0%
! GTCTGATCTGTAGTTTTCAG+TGG - chr8.2:62939680-62939699 None:intergenic 40.0%
! GTGATAGCGAAAGCCAAAAT+GGG + chr8.2:62939081-62939100 MS.gene051245:intron 40.0%
! TCAATGGATTCTTGTCTTGG+AGG + chr8.2:62938454-62938473 MS.gene051245:intron 40.0%
! TGTGATAGCGAAAGCCAAAA+TGG + chr8.2:62939080-62939099 MS.gene051245:intron 40.0%
! TGTTTGGTTCCACTTCTAGA+GGG + chr8.2:62936802-62936821 MS.gene051245:intron 40.0%
!!! CTAGTTTTACTCCCCATTCT+TGG + chr8.2:62940147-62940166 MS.gene051245:intron 40.0%
!!! TGGATTGGGTTCTAGGTTTT+GGG + chr8.2:62938154-62938173 MS.gene051245:intron 40.0%
!!! TTGGATTGGGTTCTAGGTTT+TGG + chr8.2:62938153-62938172 MS.gene051245:intron 40.0%
AAGCTGAACTGGTTGTGCAT+GGG - chr8.2:62937086-62937105 None:intergenic 45.0%
ACAGATCAGACCAGAAGTCT+TGG + chr8.2:62939689-62939708 MS.gene051245:CDS 45.0%
CCAGGACAAGGTTAAGTAAC+TGG - chr8.2:62938585-62938604 None:intergenic 45.0%
CCAGTTACTTAACCTTGTCC+TGG + chr8.2:62938582-62938601 MS.gene051245:CDS 45.0%
GATTGCAAACCCCTTTCTTG+AGG + chr8.2:62940439-62940458 MS.gene051245:CDS 45.0%
GCATGACTGAACTTTCAAGC+AGG - chr8.2:62939246-62939265 None:intergenic 45.0%
GGTGTTCAAGTCAAGCTTAC+TGG + chr8.2:62936536-62936555 MS.gene051245:CDS 45.0%
GTTCAAGTCAAGCTTACTGG+TGG + chr8.2:62936539-62936558 MS.gene051245:CDS 45.0%
TGGGAGGAAAGAAACTGTTC+TGG + chr8.2:62936490-62936509 MS.gene051245:CDS 45.0%
! AATTCTGGACCCTCTAGAAG+TGG - chr8.2:62936814-62936833 None:intergenic 45.0%
! GGGATGACAAAGCAGGTTTT+GGG + chr8.2:62940319-62940338 MS.gene051245:intron 45.0%
! GTGTTTGGTTCCACTTCTAG+AGG + chr8.2:62936801-62936820 MS.gene051245:intron 45.0%
! TGGGATGACAAAGCAGGTTT+TGG + chr8.2:62940318-62940337 MS.gene051245:intron 45.0%
! TTTTGCTGGGATGACAAAGC+AGG + chr8.2:62940312-62940331 MS.gene051245:intron 45.0%
!! AACTGCTTTTGTCGCAATGC+AGG + chr8.2:62940364-62940383 MS.gene051245:intron 45.0%
!! GGGTCCAGAATTGATTTTCG+AGG + chr8.2:62936822-62936841 MS.gene051245:intron 45.0%
!!! GATTGGGTTCTAGGTTTTGG+GGG + chr8.2:62938156-62938175 MS.gene051245:intron 45.0%
!!! GGATTGGGTTCTAGGTTTTG+GGG + chr8.2:62938155-62938174 MS.gene051245:intron 45.0%
!!! AATTTTTTAAGAAAATTAAA+AGG - chr8.2:62938873-62938892 None:intergenic 5.0%
!!! ATTTTGAAATTTATAAATTT+TGG + chr8.2:62938705-62938724 MS.gene051245:intron 5.0%
!!! TTTTTTAAAAACATAATTTA+TGG + chr8.2:62939750-62939769 MS.gene051245:intron 5.0%
AACCCCTTTCTTGAGGCAGA+TGG + chr8.2:62940446-62940465 MS.gene051245:CDS 50.0%
AAGCTTACTGGTGGCAGACA+AGG + chr8.2:62936548-62936567 MS.gene051245:CDS 50.0%
ACCCCTTTCTTGAGGCAGAT+GGG + chr8.2:62940447-62940466 MS.gene051245:CDS 50.0%
AGCTGAACTGGTTGTGCATG+GGG - chr8.2:62937085-62937104 None:intergenic 50.0%
ATCTCGTCCGTACCATCAGT+TGG - chr8.2:62940422-62940441 None:intergenic 50.0%
ATGCTTGTGTCGCCAACTGA+TGG + chr8.2:62940407-62940426 MS.gene051245:CDS 50.0%
CAACAGCTTCATCCAGGACA+AGG - chr8.2:62938597-62938616 None:intergenic 50.0%
GAAGCTGAACTGGTTGTGCA+TGG - chr8.2:62937087-62937106 None:intergenic 50.0%
TGTCGCAATGCAGGTTTGCA+GGG + chr8.2:62940373-62940392 MS.gene051245:intron 50.0%
TGTGTCGCCAACTGATGGTA+CGG + chr8.2:62940412-62940431 MS.gene051245:CDS 50.0%
TTGTCGCAATGCAGGTTTGC+AGG + chr8.2:62940372-62940391 MS.gene051245:intron 50.0%
! GGGGTATTCTTGGTGAGCAT+TGG + chr8.2:62938073-62938092 MS.gene051245:intron 50.0%
CCCCATCTGCCTCAAGAAAG+GGG - chr8.2:62940451-62940470 None:intergenic 55.0%
CCCCTTTCTTGAGGCAGATG+GGG + chr8.2:62940448-62940467 MS.gene051245:CDS 55.0%
GCCCCATCTGCCTCAAGAAA+GGG - chr8.2:62940452-62940471 None:intergenic 55.0%
GTCGCAATGCAGGTTTGCAG+GGG + chr8.2:62940374-62940393 MS.gene051245:intron 55.0%
GGCCCCATCTGCCTCAAGAA+AGG - chr8.2:62940453-62940472 None:intergenic 60.0%
TCTTGAGGCAGATGGGGCCT+AGG + chr8.2:62940454-62940473 MS.gene051245:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 62936358 62940475 62936358 ID=MS.gene051245
chr8.2 mRNA 62936358 62940475 62936358 ID=MS.gene051245.t1;Parent=MS.gene051245
chr8.2 exon 62936358 62936360 62936358 ID=MS.gene051245.t1.exon1;Parent=MS.gene051245.t1
chr8.2 CDS 62936358 62936360 62936358 ID=cds.MS.gene051245.t1;Parent=MS.gene051245.t1
chr8.2 exon 62936488 62936569 62936488 ID=MS.gene051245.t1.exon2;Parent=MS.gene051245.t1
chr8.2 CDS 62936488 62936569 62936488 ID=cds.MS.gene051245.t1;Parent=MS.gene051245.t1
chr8.2 exon 62938557 62938628 62938557 ID=MS.gene051245.t1.exon3;Parent=MS.gene051245.t1
chr8.2 CDS 62938557 62938628 62938557 ID=cds.MS.gene051245.t1;Parent=MS.gene051245.t1
chr8.2 exon 62939666 62939718 62939666 ID=MS.gene051245.t1.exon4;Parent=MS.gene051245.t1
chr8.2 CDS 62939666 62939718 62939666 ID=cds.MS.gene051245.t1;Parent=MS.gene051245.t1
chr8.2 exon 62940386 62940475 62940386 ID=MS.gene051245.t1.exon5;Parent=MS.gene051245.t1
chr8.2 CDS 62940386 62940475 62940386 ID=cds.MS.gene051245.t1;Parent=MS.gene051245.t1
Gene Sequence

>MS.gene051245

ATGGTGAGTTTCTTTTCCAAAATTTCATCACCTTTGGCATATTTATCTTACTTCACACTCACACACACAACAAATTGAAAACGAGCGAACAAAAAAAGACCTAATTTCTTTTCTTTATTTTATTTTTCAGTCTGGGAGGAAAGAAACTGTTCTGGATTTAGCAAAATTTGTTGATAAAGGTGTTCAAGTCAAGCTTACTGGTGGCAGACAAGGTATATAACCAACTCACCTTTCTCTTTTTTATTTTATTTTATACGTTTCTTCTTATCATTAAATTGATTCTGGCTTAAAGTAATTTATGTTTGGATACATTCATATAATAAATAGGGTTGGACAAAAGTCAATTATTGAGACAAAACTTTCAAATTCTAGCCGAGAATTGATTTTGAGTGAATTGATTCTGTAAAATTGATTGTGGAATTTAGAAGCTACAATTTCTAACTGTGTTTGGTTCCACTTCTAGAGGGTCCAGAATTGATTTTCGAGGTGTATAATTGATTCTGACATGTTTGCTTTTGTCGAGTAGAATTTATTCTCCCTCCAAAATTGATTTTACTTGAAGCTAGAATTTTTGTAGTTTTTGATTCTAGATTTGATTTTCTGACACAAATTTATAGTTCAACTTACTTTTACATGAATATATCCCCAAAAACAAATCACTTTTAGTTAGAATTACTTTTAACCAAAAGCAATTCTACAAAATACTTCTATCAAAATCAATTCTCCCCATGCACAACCAGTTCAGCTTCTACAAGAATTGATTTTGAGTGAATTGATTATGTAAAATTGATTCTACATAAAAGTGAGTTGAATGTAAAATGATACATGTTTGGATGTTTTTATATAAAAGTTGATTTAACAATAAATTTAAGGCTAGAATCAATTGTAGTAGCCAAAAGCAACAAATTGTAGCTTCAAGTAGAATCAATTCTACAAGCAAAATCAATTCTACTTTAAATCACCCAAACATCATAAATTCAATTCTACAACCTCTAGAATCACTTTTGACTCTCTAGGATTGAAACCAAACATGTCAAAATCAATTATACATGTGTGGAATCAATATTCCCTCATCCAAACATTTTCATTTTCTTAAATTATTACATGTGTCTTTGCAGTGTTTGGTATCTGTGTCTGTCGGAGTGCTTCTCAGTTTGAGAGTTTGTTAAATGTCATTTTCTCTAGCTTGAGTTTAGTTACCATCTTTTGAATAAAAAAATTTAGAATTTTAATTGCAATTTTGTACTAAGATTTGAAGTTCTTCGAGAAAATATTGTCTGATTTTGAGTTTGTAGTCGTTTTTGTTTGTCGAGATTGAATTATTTGTGTGCACTGCTTTGTGTGTTGATTTGCTTTTAATATTATGGATATTCTTATTTGTAGGTCAATATGTCTTGTTTTGGATTCACTTCTTTAATATTTCATTCTATTCTTCTGAATTTTGTATGCAAATAACATTACATAGTTTATATTTTGTATTAATTTTGTAATTCTGCTAGTCAACTTATATATGACGACAATGAATGATGAAAATCTAGAATATTAAATTCATACAAAAGTAAATAATTGATAATCCTTGTGTATGTTTTTTTTGTTTTGTTTTAAGGAAAGTCCTTATGTATGTTATTAACTGTGTTATGTGCAGCTTTTTATCTGAAATAATTGGGTGAGTTTTTCAAATTGTAAGGGTGTCACTTTCCTATTGAACCATTTTTGGGGTATTCTTGGTGAGCATTGGTAGTGTGAGTGCGCACTTAATACAATTCTTTGCTGTGGGATGAAATAATTGCTCTATTTGGATTGGGTTCTAGGTTTTGGGGGCTTCTCAATTGAGATAAATACTTGTTTCAGAACTTATGGAATATATCCTTAAACGTTTGTTCGCAGTTATGGAGAATTTAAACGAGAGATATTCTAAAAAGGTTGAGGTGGAGAAATTAATTTTAACTTGTTTAAGAAGTTATTATTTAGAAGTCTCATAGTCATTGCTTGATCATTTCAACTTTTCTTTTCATTGAACTTGTTGAGAAGTATATCCAAACTTACTTTATGTTTATTGCTTCTCCTTTGTGTTCATGCTATGGTTCTTTCAATTTTCAATGGATTCTTGTCTTGGAGGATATCTTGTCTTCTCCATAATCTTCAATGTTTACTTTAGAGATGAGGGGTCTAACATAATTACAATTTGTTGAATTGTAGTGACAGGTACTCTAAAAGGGTATGACCAGTTACTTAACCTTGTCCTGGATGAAGCTGTTGAGTTTTTAAGAGGTAAATACTACATAGTGTACCAGCTCCATGTTTTTTTTTTCTTAACATTTAGTAACTTGATTAGTCAATTGCATATATTTTGAAATTTATAAATTTTGGATCGCTATAATGCCATGACTTCATCTTTCCTATAACACATTGAAATAAATACAGCTTGTATAGAAAGGGAATAAAGAGAAAGTTCATCTAATTCATTCAGGGCATATGATTGTTGGTGCTTTGTTTTTGAAGAAAAAAAGGGCCTTTTAATTTTCTTAAAAAATTATATCATAATTAGATAAACCTTGTTAAAATATAGAAGGAAAAAAAACAGTTTTAGTTATTATCTCAAAATCTAGAAAAATGATTCTGCACACAAGCTGTCATAAATGTGCTTTTCACCTAAGTTGACATTTTTTTGTTTTTTTTTTCTTCACAATATTACCTAAGCACTAAGGGACTTTTACCAAATTGTGATAGCGAAAGCCAAAATGGGTGATGAATTAAAAGTAGCACACTTTAACATCACTTCTCAACTGAAATTGCCCACATTGATACTGCTTTAACTCGTTGTTGTTCAAAATGTTTTCTTATTTGTTTTGGCAATATGTAAAATGTCAACATCTATATGATTGCCTGCTTGAAAGTTCAGTCATGCAATATGGACTATAGAGTCGTGATGCACCCTTGTGTATATTTAGCTTTAATGAATAATTTACAACAAATATCATACATAGTTTCGTTCATGCTAAGCCTTTCATGTCAAGTTTATTATTCTGATGTAGTTTGATAGTGTCTGATAAACTGATACATATTTGTCATACAACCTTGTAAAATCATCTCGGCAAAACTGTCTATTTTAAGAGTGAAACTAGGTTTTGTTTGCCTACTCGTACTTATTTTTTCAAAGTAGTGCTTGATAAGAATGTTAATGCCCTCTGCAAAGTAACTATATAGTTTCTAAGAAGTAGTGTTGAATAGTTAAATCTTATTAACATAAGAACAGCTTTACATATTCTTTGTAACCAAAATCCATGTGTTTTATTTTTGTGCTGCAGATCCCGATGATCCACTGAAAACTACAGATCAGACCAGAAGTCTTGGCTTAATTGTATGCTTCTTTCATTCTTTCCCACCTTCTCTTTTTTAAAAACATAATTTATGGTCTATTTATTAGAGTACTATAATTGTTTTCTAATTTCATAGTCAATTCCTTATTGATAAAACATTGGAAATGGAAACATAATTTGTCACAAAGATGTTTTGGTTTTCTAATTAATCTAGCTTGTCATGAGTTTAGTCAGATGAATAGATAAGAAAAGGGAAAACACTTACTAATTGGAACTGATGGAAAGTTCTTGTTTGCTTGCAAATCTTTATTGGAAAGTAAAAATGTGAAGATATAAGCTGAATTTGCAGTTTCATAATTTTTTTGCCACATGATGATCAGTACTAGAAAAAAGGGCAGGATTATATTGTTGTCATACTCTAGTTCCCAAGACATTTGTTTTGTTGTACAAGTAGGAGCTGTGAATGTTACTAGTTTTACTCCCCATTCTTGGCAAAATTTGAATTTGATGTAAATTTGAAATTTATATCAAATTTGCAAATGCTTATTAGCACTTAATATCTTTTGTGACTAATTAACAGCATGCATTGAGAAAACATTTCTTGTAAGTTACACAACCAAAACAAATATATGAATTTTGCTGGGATGACAAAGCAGGTTTTGGGCATATTATTACTGTTGGAACTAAACTGCTTTTGTCGCAATGCAGGTTTGCAGGGGAACTGCTGTCATGCTTGTGTCGCCAACTGATGGTACGGACGAGATTGCAAACCCCTTTCTTGAGGCAGATGGGGCCTAG

Protein sequence

>MS.gene051245.t1

MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCRGTAVMLVSPTDGTDEIANPFLEADGA