Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052254.t1 | XP_003599303.2 | 95.6 | 296 | 13 | 0 | 1 | 296 | 85 | 380 | 2.30E-150 | 541.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052254.t1 | Q8R3F5 | 39.1 | 297 | 171 | 4 | 1 | 289 | 69 | 363 | 2.0e-49 | 197.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052254.t1 | G7J0N6 | 95.6 | 296 | 13 | 0 | 1 | 296 | 85 | 380 | 1.7e-150 | 541.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene052254 | 0.807109 | 5.93E-50 | -1.69E-46 |
| MS.gene051662 | MS.gene052254 | 0.812911 | 3.34E-51 | -1.69E-46 |
| MS.gene052254 | MS.gene052256 | 0.970228 | 2.68E-131 | -1.69E-46 |
| MS.gene052254 | MS.gene053132 | 0.821 | 5.09E-53 | -1.69E-46 |
| MS.gene052254 | MS.gene054942 | 0.806686 | 7.29E-50 | -1.69E-46 |
| MS.gene052254 | MS.gene06001 | 0.800695 | 1.28E-48 | -1.69E-46 |
| MS.gene052254 | MS.gene06420 | 0.806756 | 7.05E-50 | -1.69E-46 |
| MS.gene052254 | MS.gene064679 | 0.820516 | 6.58E-53 | -1.69E-46 |
| MS.gene052254 | MS.gene065392 | 0.809289 | 2.04E-50 | -1.69E-46 |
| MS.gene052254 | MS.gene06594 | 0.823378 | 1.43E-53 | -1.69E-46 |
| MS.gene052254 | MS.gene067029 | 0.829181 | 5.94E-55 | -1.69E-46 |
| MS.gene052254 | MS.gene06806 | 0.82848 | 8.78E-55 | -1.69E-46 |
| MS.gene052254 | MS.gene068972 | 0.824937 | 6.16E-54 | -1.69E-46 |
| MS.gene052254 | MS.gene07089 | 0.800149 | 1.65E-48 | -1.69E-46 |
| MS.gene052254 | MS.gene08829 | 0.808953 | 2.40E-50 | -1.69E-46 |
| MS.gene052254 | MS.gene08982 | 0.805659 | 1.20E-49 | -1.69E-46 |
| MS.gene052254 | MS.gene09264 | 0.801048 | 1.08E-48 | -1.69E-46 |
| MS.gene052254 | MS.gene21089 | 0.838379 | 2.98E-57 | -1.69E-46 |
| MS.gene052254 | MS.gene35147 | 0.800563 | 1.36E-48 | -1.69E-46 |
| MS.gene052254 | MS.gene36120 | 0.851202 | 1.03E-60 | -1.69E-46 |
| MS.gene052254 | MS.gene40106 | 0.807059 | 6.08E-50 | -1.69E-46 |
| MS.gene052254 | MS.gene41132 | 0.832418 | 9.56E-56 | -1.69E-46 |
| MS.gene052254 | MS.gene42724 | 0.802604 | 5.18E-49 | -1.69E-46 |
| MS.gene052254 | MS.gene44135 | -0.809107 | 2.23E-50 | -1.69E-46 |
| MS.gene052254 | MS.gene49330 | 0.800458 | 1.43E-48 | -1.69E-46 |
| MS.gene052254 | MS.gene50595 | 0.803022 | 4.25E-49 | -1.69E-46 |
| MS.gene052254 | MS.gene70565 | 0.80168 | 8.03E-49 | -1.69E-46 |
| MS.gene052254 | MS.gene78973 | 0.809531 | 1.81E-50 | -1.69E-46 |
| MS.gene052254 | MS.gene88087 | 0.808748 | 2.66E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074258 | MS.gene052254 | PPI |
| MS.gene76034 | MS.gene052254 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052254.t1 | MTR_3g031380 | 95.608 | 296 | 13 | 0 | 1 | 296 | 85 | 380 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052254.t1 | AT2G30200 | 87.162 | 296 | 38 | 0 | 1 | 296 | 98 | 393 | 0.0 | 514 |
| MS.gene052254.t1 | AT2G30200 | 87.500 | 248 | 31 | 0 | 1 | 248 | 98 | 345 | 9.24e-153 | 432 |
Find 0 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAGAAAAATATGTAATTA+TGG | - | 20888:69911-69930 | MS.gene052254:intron | 15.0% |
| !! | ATAAAAAAAACTTCTACTAT+TGG | - | 20888:68799-68818 | MS.gene052254:intron | 15.0% |
| !! | TTTAAAAAAAAACAACTCAA+AGG | + | 20888:70209-70228 | MS.gene052254:intergenic | 15.0% |
| !! | TTTATAAACAACAAATTTCA+TGG | + | 20888:69561-69580 | MS.gene052254:intergenic | 15.0% |
| !!! | AAATTGACTGTATTATATTT+TGG | - | 20888:70668-70687 | MS.gene052254:intron | 15.0% |
| !!! | ATGAAATTTGTTGTTTATAA+AGG | - | 20888:69560-69579 | MS.gene052254:intron | 15.0% |
| !!! | GTTTAAATTACAACTATTTT+TGG | - | 20888:68195-68214 | MS.gene052254:intron | 15.0% |
| !!! | TTGTTTTGTATTATGTATTT+AGG | - | 20888:68242-68261 | MS.gene052254:intron | 15.0% |
| !! | AAGTACAAAAATAATGACAT+TGG | + | 20888:68572-68591 | MS.gene052254:intergenic | 20.0% |
| !! | ACAAATCGAATTAAATACAT+GGG | + | 20888:70268-70287 | MS.gene052254:intergenic | 20.0% |
| !! | TACAAATCGAATTAAATACA+TGG | + | 20888:70269-70288 | MS.gene052254:intergenic | 20.0% |
| !! | TTTAGTATAAACGAAAATCA+AGG | - | 20888:68344-68363 | MS.gene052254:intron | 20.0% |
| !!! | AACATGGTAATCAATTTTTT+TGG | + | 20888:69821-69840 | MS.gene052254:intergenic | 20.0% |
| !!! | TTTTTTGGACAAAAAATACA+TGG | + | 20888:69806-69825 | MS.gene052254:intergenic | 20.0% |
| ! | AAACTTTAAATGACTCATAC+TGG | + | 20888:70013-70032 | MS.gene052254:intergenic | 25.0% |
| ! | AAATTACATATATGCCTCTA+TGG | + | 20888:69586-69605 | MS.gene052254:intergenic | 25.0% |
| ! | AATATCTTCTTTATTGTGTC+AGG | + | 20888:71000-71019 | MS.gene052254:intergenic | 25.0% |
| ! | AATTGAACTTCTAATGCAAT+TGG | - | 20888:71082-71101 | MS.gene052254:intron | 25.0% |
| ! | ACAAAAATAATGACATTGGA+TGG | + | 20888:68568-68587 | MS.gene052254:intergenic | 25.0% |
| ! | AGTCATTACAATCTAGTAAA+TGG | - | 20888:70051-70070 | MS.gene052254:intron | 25.0% |
| ! | ATCTCAAATATTCCTAAACT+GGG | + | 20888:68597-68616 | MS.gene052254:intergenic | 25.0% |
| ! | CAAATATTTCTTGAAACGTT+GGG | + | 20888:69889-69908 | MS.gene052254:intergenic | 25.0% |
| ! | GGAATAAAAAGAGAATAAAG+AGG | - | 20888:69470-69489 | MS.gene052254:intron | 25.0% |
| ! | GTAAATCAAGACAAAAAAAG+TGG | + | 20888:70235-70254 | MS.gene052254:intergenic | 25.0% |
| ! | GTTAACATTATCAACGAAAT+AGG | - | 20888:69360-69379 | MS.gene052254:intron | 25.0% |
| ! | GTTGGGAAAAATATGAAAAA+CGG | + | 20888:69872-69891 | MS.gene052254:intergenic | 25.0% |
| ! | TAGCAGAATTATAAAACTAG+AGG | + | 20888:71250-71269 | MS.gene052254:intergenic | 25.0% |
| ! | TCAAATATTTCTTGAAACGT+TGG | + | 20888:69890-69909 | MS.gene052254:intergenic | 25.0% |
| ! | TGACACAATAAAGAAGATAT+TGG | - | 20888:70999-71018 | MS.gene052254:intron | 25.0% |
| ! | TTAAATGTAACAGAAGTCTA+AGG | + | 20888:68913-68932 | MS.gene052254:intergenic | 25.0% |
| ! | TTCTTGATGTATGCATTAAT+GGG | - | 20888:68272-68291 | MS.gene052254:CDS | 25.0% |
| ! | TTCTTTATGATATGACGAAA+CGG | - | 20888:68436-68455 | MS.gene052254:CDS | 25.0% |
| ! | TTGTTATAATAGTTCCAGTT+GGG | + | 20888:69221-69240 | MS.gene052254:intergenic | 25.0% |
| !! | CTCTGTAATCATGATTTTAA+AGG | - | 20888:69449-69468 | MS.gene052254:intron | 25.0% |
| !!! | AATATGAGTTGGTTTGTAAT+CGG | - | 20888:69074-69093 | MS.gene052254:intron | 25.0% |
| !!! | CTGCTAACTTTTATTTTATC+TGG | - | 20888:71264-71283 | MS.gene052254:intron | 25.0% |
| !!! | CTTTAAAATCATGATTACAG+AGG | + | 20888:69451-69470 | MS.gene052254:intergenic | 25.0% |
| !!! | GACTGTATTATATTTTGGTA+GGG | - | 20888:70673-70692 | MS.gene052254:intron | 25.0% |
| !!! | TCAAGGTTGTTATTTTATTG+AGG | - | 20888:68361-68380 | MS.gene052254:intron | 25.0% |
| !!! | TGACTGTATTATATTTTGGT+AGG | - | 20888:70672-70691 | MS.gene052254:intron | 25.0% |
| AATTCTACTGTCATGGTAAA+AGG | + | 20888:69946-69965 | MS.gene052254:intergenic | 30.0% | |
| ACAATTAGAAGTTGAATCAC+TGG | - | 20888:69124-69143 | MS.gene052254:CDS | 30.0% | |
| ACTGAAATTGGTGAAACTAA+GGG | - | 20888:70303-70322 | MS.gene052254:intron | 30.0% | |
| AGATAAATGCTCTCTTATCA+GGG | + | 20888:69306-69325 | MS.gene052254:intergenic | 30.0% | |
| AGGCATTATTACTTTGCAAA+AGG | + | 20888:70816-70835 | MS.gene052254:intergenic | 30.0% | |
| ATACCATCTATGAGAAGTTT+AGG | - | 20888:70090-70109 | MS.gene052254:intron | 30.0% | |
| ATATGTAATTATGGCGTATG+TGG | - | 20888:69920-69939 | MS.gene052254:intron | 30.0% | |
| ATCATCTATACTTGATCAAC+AGG | + | 20888:69021-69040 | MS.gene052254:intergenic | 30.0% | |
| ATTGTCAAAAGAATGGACAA+AGG | - | 20888:71308-71327 | MS.gene052254:CDS | 30.0% | |
| CAACTCATATTACACTGTTA+TGG | + | 20888:69065-69084 | MS.gene052254:intergenic | 30.0% | |
| CAGTTTAGGAATATTTGAGA+TGG | - | 20888:68596-68615 | MS.gene052254:intron | 30.0% | |
| CATAACAGTGTAATATGAGT+TGG | - | 20888:69063-69082 | MS.gene052254:intron | 30.0% | |
| CATCTCAAATATTCCTAAAC+TGG | + | 20888:68598-68617 | MS.gene052254:intergenic | 30.0% | |
| CATTATTACTTTGCAAAAGG+TGG | + | 20888:70813-70832 | MS.gene052254:intergenic | 30.0% | |
| CTGAAGAAAAGCTATGAATT+GGG | - | 20888:71162-71181 | MS.gene052254:CDS | 30.0% | |
| CTTCTTGATGTATGCATTAA+TGG | - | 20888:68271-68290 | MS.gene052254:CDS | 30.0% | |
| GTTGTTATAATAGTTCCAGT+TGG | + | 20888:69222-69241 | MS.gene052254:intergenic | 30.0% | |
| TAAAATCATGATTACAGAGG+AGG | + | 20888:69448-69467 | MS.gene052254:intergenic | 30.0% | |
| TAAATACCCCAAAATCTCAT+TGG | + | 20888:68162-68181 | MS.gene052254:intergenic | 30.0% | |
| TATGCATTCTAGTGTAGAAA+AGG | + | 20888:69524-69543 | MS.gene052254:intergenic | 30.0% | |
| TCCATTTACAAACAACAGAA+AGG | - | 20888:68657-68676 | MS.gene052254:intron | 30.0% | |
| TCTCAAATATTCCTAAACTG+GGG | + | 20888:68596-68615 | MS.gene052254:intergenic | 30.0% | |
| TTTACCATGACAGTAGAATT+AGG | - | 20888:69946-69965 | MS.gene052254:intron | 30.0% | |
| ! | AAGAAAGCCAATGAGATTTT+GGG | - | 20888:68152-68171 | MS.gene052254:intron | 30.0% |
| ! | AAGCCTTTTAATATTAGACG+GGG | - | 20888:69249-69268 | MS.gene052254:intron | 30.0% |
| ! | CAAGCCTTTTAATATTAGAC+GGG | - | 20888:69248-69267 | MS.gene052254:intron | 30.0% |
| ! | CCAAGCCTTTTAATATTAGA+CGG | - | 20888:69247-69266 | MS.gene052254:intron | 30.0% |
| ! | TAGAAACAGAATTTTGCCTA+AGG | + | 20888:70624-70643 | MS.gene052254:intergenic | 30.0% |
| ! | TCCTTTCTGTTGTTTGTAAA+TGG | + | 20888:68661-68680 | MS.gene052254:intergenic | 30.0% |
| ! | TTAGTGTTATCGATTGTGAA+TGG | - | 20888:68490-68509 | MS.gene052254:CDS | 30.0% |
| ! | TTTTCCTAATTCTACTGTCA+TGG | + | 20888:69953-69972 | MS.gene052254:intergenic | 30.0% |
| !! | GTTATTTTATTGAGGTGGAA+GGG | - | 20888:68369-68388 | MS.gene052254:intron | 30.0% |
| !! | TTATTTTATCTGGACTCTTC+AGG | - | 20888:71274-71293 | MS.gene052254:CDS | 30.0% |
| !!! | AGGTTGTTATTTTATTGAGG+TGG | - | 20888:68364-68383 | MS.gene052254:intron | 30.0% |
| !!! | TGTTATTTTATTGAGGTGGA+AGG | - | 20888:68368-68387 | MS.gene052254:intron | 30.0% |
| AAAGAAGATATTGGCACAAC+AGG | - | 20888:71008-71027 | MS.gene052254:intron | 35.0% | |
| ACTCTCAAGTCTCAAATTTC+TGG | + | 20888:68986-69005 | MS.gene052254:intergenic | 35.0% | |
| AGAAAGCAAAGAATCTGCAA+TGG | - | 20888:68514-68533 | MS.gene052254:CDS | 35.0% | |
| AGGCATAAAAGGAATAGAAG+TGG | - | 20888:70714-70733 | MS.gene052254:intron | 35.0% | |
| ATAACATATCCTCAGTGTGT+TGG | - | 20888:68710-68729 | MS.gene052254:CDS | 35.0% | |
| ATTGAAAACATCGGAGCTTA+AGG | - | 20888:71338-71357 | MS.gene052254:CDS | 35.0% | |
| ATTTATGTGCAAAACCACAC+AGG | + | 20888:70170-70189 | MS.gene052254:intergenic | 35.0% | |
| CAGGTTCCATAAAACTAGTA+TGG | + | 20888:70882-70901 | MS.gene052254:intergenic | 35.0% | |
| CATAAAAGGAATAGAAGTGG+TGG | - | 20888:70717-70736 | MS.gene052254:intron | 35.0% | |
| CCGTCTAATATTAAAAGGCT+TGG | + | 20888:69250-69269 | MS.gene052254:intergenic | 35.0% | |
| CTGAAATTGGTGAAACTAAG+GGG | - | 20888:70304-70323 | MS.gene052254:intron | 35.0% | |
| CTGCATGATGAAAAAATCAG+TGG | + | 20888:68636-68655 | MS.gene052254:intergenic | 35.0% | |
| GAATTCAACAGTTATCAGTC+AGG | - | 20888:68309-68328 | MS.gene052254:CDS | 35.0% | |
| GACTGAAATTGGTGAAACTA+AGG | - | 20888:70302-70321 | MS.gene052254:intron | 35.0% | |
| GAGAAGCAGTAGAAAAAACA+TGG | + | 20888:69837-69856 | MS.gene052254:intergenic | 35.0% | |
| GAGATAAATGCTCTCTTATC+AGG | + | 20888:69307-69326 | MS.gene052254:intergenic | 35.0% | |
| GATTCTGTTGATGTTTCATG+TGG | - | 20888:69701-69720 | MS.gene052254:CDS | 35.0% | |
| GCTATTATATTTCACCCAAC+TGG | - | 20888:69204-69223 | MS.gene052254:intron | 35.0% | |
| GCTGAAGAAAAGCTATGAAT+TGG | - | 20888:71161-71180 | MS.gene052254:CDS | 35.0% | |
| GGGAAAAATATGAAAAACGG+AGG | + | 20888:69869-69888 | MS.gene052254:intergenic | 35.0% | |
| GTAACCATTGTTCTTTATCC+AGG | - | 20888:70430-70449 | MS.gene052254:intron | 35.0% | |
| GTTGTTTATAAAGGCCATAG+AGG | - | 20888:69569-69588 | MS.gene052254:intron | 35.0% | |
| TAATGACATTGGATGGAATG+TGG | + | 20888:68561-68580 | MS.gene052254:intergenic | 35.0% | |
| TATGTTAAGTGACCCAACTA+CGG | - | 20888:69982-70001 | MS.gene052254:intron | 35.0% | |
| TCCAACACAAAAGACATAAG+TGG | - | 20888:71054-71073 | MS.gene052254:intron | 35.0% | |
| TCCATTGAGATTCAAGAACA+CGG | + | 20888:71225-71244 | MS.gene052254:intergenic | 35.0% | |
| TGCTGGAATTGTCAAAAGAA+TGG | - | 20888:71301-71320 | MS.gene052254:CDS | 35.0% | |
| TGGAAATGACTGGTATTCTT+GGG | + | 20888:70951-70970 | MS.gene052254:intergenic | 35.0% | |
| TTGGAAATGACTGGTATTCT+TGG | + | 20888:70952-70971 | MS.gene052254:intergenic | 35.0% | |
| TTTATGTGCAAAACCACACA+GGG | + | 20888:70169-70188 | MS.gene052254:intergenic | 35.0% | |
| ! | ACCACTTATGTCTTTTGTGT+TGG | + | 20888:71058-71077 | MS.gene052254:intergenic | 35.0% |
| ! | AGAAAGCCAATGAGATTTTG+GGG | - | 20888:68153-68172 | MS.gene052254:intron | 35.0% |
| ! | CAAGAAAGCCAATGAGATTT+TGG | - | 20888:68151-68170 | MS.gene052254:intron | 35.0% |
| ! | GTAATAATGCCTTTTCCTCA+TGG | - | 20888:70824-70843 | MS.gene052254:intron | 35.0% |
| ! | GTTGAATTCAGCTTTTCCTT+CGG | + | 20888:68298-68317 | MS.gene052254:intergenic | 35.0% |
| ! | TTTTGTACTTTCCCCAGTTT+AGG | - | 20888:68582-68601 | MS.gene052254:intron | 35.0% |
| !! | CGATTTGTAAGCTTTGAAGA+TGG | - | 20888:70280-70299 | MS.gene052254:intron | 35.0% |
| !! | CTTTGAAGATGGACTGAAAT+TGG | - | 20888:70291-70310 | MS.gene052254:intron | 35.0% |
| !! | GGTGCTGATATTGAAAACAT+CGG | - | 20888:71329-71348 | MS.gene052254:CDS | 35.0% |
| !! | GTGTGGTTTTGCACATAAAT+TGG | - | 20888:70170-70189 | MS.gene052254:intron | 35.0% |
| !!! | ATCTGGCTTTTAACAACCTT+AGG | - | 20888:70605-70624 | MS.gene052254:intron | 35.0% |
| !!! | CGCTTTCCATACTAGTTTTA+TGG | - | 20888:70873-70892 | MS.gene052254:intron | 35.0% |
| AAAAGCTATGAATTGGGACC+TGG | - | 20888:71168-71187 | MS.gene052254:intron | 40.0% | |
| AGCAAGACTTGTGACATACA+GGG | + | 20888:69636-69655 | MS.gene052254:intergenic | 40.0% | |
| AGCTGACAAGCTGAAAACAA+AGG | + | 20888:70116-70135 | MS.gene052254:intergenic | 40.0% | |
| AGGCCTAAACTTCTCATAGA+TGG | + | 20888:70096-70115 | MS.gene052254:intergenic | 40.0% | |
| AGGTTACTTACCCTGTTCAA+TGG | - | 20888:71106-71125 | MS.gene052254:intron | 40.0% | |
| AGTGAAGACTCTTCTATCCA+AGG | - | 20888:71137-71156 | MS.gene052254:CDS | 40.0% | |
| ATCATTCATCCAACACACTG+AGG | + | 20888:68722-68741 | MS.gene052254:intergenic | 40.0% | |
| ATGATTACAGAGGAGGTCTA+AGG | + | 20888:69441-69460 | MS.gene052254:intergenic | 40.0% | |
| ATGTTAAGTGACCCAACTAC+GGG | - | 20888:69983-70002 | MS.gene052254:intron | 40.0% | |
| ATTGTGTCAGGATCTGTATG+TGG | + | 20888:70988-71007 | MS.gene052254:intergenic | 40.0% | |
| CAGCCCCGTCTAATATTAAA+AGG | + | 20888:69255-69274 | MS.gene052254:intergenic | 40.0% | |
| CCAATTACCTATGTCCAGTA+AGG | - | 20888:70573-70592 | MS.gene052254:intron | 40.0% | |
| CCTTACTGGACATAGGTAAT+TGG | + | 20888:70576-70595 | MS.gene052254:intergenic | 40.0% | |
| CGTAAACTTTCTACCTTTCC+AGG | + | 20888:71189-71208 | MS.gene052254:intergenic | 40.0% | |
| GAACTTCTAATGCAATTGGC+AGG | - | 20888:71086-71105 | MS.gene052254:intron | 40.0% | |
| GAATCACTGGAAATCACTTC+TGG | - | 20888:69137-69156 | MS.gene052254:CDS | 40.0% | |
| GCATCCTGGATAAAGAACAA+TGG | + | 20888:70437-70456 | MS.gene052254:intergenic | 40.0% | |
| GCATTTACGTTGGAAATGAC+TGG | + | 20888:70961-70980 | MS.gene052254:intergenic | 40.0% | |
| GGAAATGACTGGTATTCTTG+GGG | + | 20888:70950-70969 | MS.gene052254:intergenic | 40.0% | |
| GGTCACTTAACATATCCACT+CGG | + | 20888:69976-69995 | MS.gene052254:intergenic | 40.0% | |
| GGTTACTTACCCTGTTCAAT+GGG | - | 20888:71107-71126 | MS.gene052254:intron | 40.0% | |
| GTAGAATTAGGAAAACCGAG+TGG | - | 20888:69958-69977 | MS.gene052254:intron | 40.0% | |
| GTGAAGACTCTTCTATCCAA+GGG | - | 20888:71138-71157 | MS.gene052254:CDS | 40.0% | |
| GTTTCATGTGGTTTGAGCTT+AGG | - | 20888:69713-69732 | MS.gene052254:CDS | 40.0% | |
| TATGTCCAGTAAGGTTCTTG+AGG | - | 20888:70582-70601 | MS.gene052254:intron | 40.0% | |
| TCAAGAACCTTACTGGACAT+AGG | + | 20888:70583-70602 | MS.gene052254:intergenic | 40.0% | |
| TCCGTGTTCTTGAATCTCAA+TGG | - | 20888:71221-71240 | MS.gene052254:intron | 40.0% | |
| TGAAAAACGGAGGCAATGAA+AGG | + | 20888:69859-69878 | MS.gene052254:intergenic | 40.0% | |
| TGAAGACTCTTCTATCCAAG+GGG | - | 20888:71139-71158 | MS.gene052254:CDS | 40.0% | |
| TTGTACAAAACTGCAGCAGA+AGG | + | 20888:68134-68153 | MS.gene052254:intergenic | 40.0% | |
| ! | ATAATGCCTTTTCCTCATGG+TGG | - | 20888:70827-70846 | MS.gene052254:intron | 40.0% |
| ! | ATTTTATTGAGGTGGAAGGG+TGG | - | 20888:68372-68391 | MS.gene052254:intron | 40.0% |
| ! | CTTTTAATATTAGACGGGGC+TGG | - | 20888:69253-69272 | MS.gene052254:intron | 40.0% |
| ! | TTCAAGAACACGGAGAGTAT+AGG | + | 20888:71215-71234 | MS.gene052254:intergenic | 40.0% |
| !! | ACTGTTGTTTCCCATTGAAC+AGG | + | 20888:71120-71139 | MS.gene052254:intergenic | 40.0% |
| !! | CTGTTGTTTCCCATTGAACA+GGG | + | 20888:71119-71138 | MS.gene052254:intergenic | 40.0% |
| ACTACCACAGATTACCTGCA+TGG | + | 20888:70335-70354 | MS.gene052254:intergenic | 45.0% | |
| AGCCAAAGCGAAGTCTTTCA+AGG | - | 20888:70741-70760 | MS.gene052254:intron | 45.0% | |
| AGCCTTGAAAGACTTCGCTT+TGG | + | 20888:70746-70765 | MS.gene052254:intergenic | 45.0% | |
| ATACTGGAAACCCCGTAGTT+GGG | + | 20888:69997-70016 | MS.gene052254:intergenic | 45.0% | |
| ATCTGAACCTTCTCAGCTTC+AGG | + | 20888:70551-70570 | MS.gene052254:intergenic | 45.0% | |
| ATTGGATGGAATGTGGTGCA+GGG | + | 20888:68554-68573 | MS.gene052254:intergenic | 45.0% | |
| CAGATCCTCAAGAACCTTAC+TGG | + | 20888:70590-70609 | MS.gene052254:intergenic | 45.0% | |
| CAGCAAGACTTGTGACATAC+AGG | + | 20888:69637-69656 | MS.gene052254:intergenic | 45.0% | |
| CAGTAAGGTTCTTGAGGATC+TGG | - | 20888:70588-70607 | MS.gene052254:intron | 45.0% | |
| CGAAACGGCATGAAGTTAAG+TGG | - | 20888:68451-68470 | MS.gene052254:CDS | 45.0% | |
| CTATGAATTGGGACCTGGAA+AGG | - | 20888:71173-71192 | MS.gene052254:intron | 45.0% | |
| GAAGTCTTTCAAGGCTCGAA+TGG | - | 20888:70750-70769 | MS.gene052254:intron | 45.0% | |
| GATGCTGCTGATGCTACTAA+AGG | - | 20888:70452-70471 | MS.gene052254:intron | 45.0% | |
| GCTTGTCAGCTTGTAGCATA+TGG | - | 20888:70125-70144 | MS.gene052254:intron | 45.0% | |
| GGCTGAAGCAGAGAATTAGA+TGG | + | 20888:69611-69630 | MS.gene052254:intergenic | 45.0% | |
| TAGGGAAACTATGCTGTCTC+TGG | - | 20888:70691-70710 | MS.gene052254:intron | 45.0% | |
| TATTGGCACAACAGGTATGC+AGG | - | 20888:71016-71035 | MS.gene052254:intron | 45.0% | |
| TCACTGGAAATCACTTCTGG+TGG | - | 20888:69140-69159 | MS.gene052254:intron | 45.0% | |
| TGTTAAGTGACCCAACTACG+GGG | - | 20888:69984-70003 | MS.gene052254:intron | 45.0% | |
| TTGCTGCTGTTGAGCTACTT+CGG | - | 20888:69651-69670 | MS.gene052254:intron | 45.0% | |
| ! | ATAGCTTTTCTTCAGCCCCT+TGG | + | 20888:71157-71176 | MS.gene052254:intergenic | 45.0% |
| ! | ATGTGGCAGAGCATTTACGT+TGG | + | 20888:70971-70990 | MS.gene052254:intergenic | 45.0% |
| ! | CTTAGGAGAGTATACTGCTC+TGG | - | 20888:69730-69749 | MS.gene052254:CDS | 45.0% |
| ! | TCTTGGGGTTCTAATGTCTG+TGG | + | 20888:70935-70954 | MS.gene052254:intergenic | 45.0% |
| ! | TGGACTCTTCAGGTTATTGC+TGG | - | 20888:71284-71303 | MS.gene052254:CDS | 45.0% |
| ! | TGTATGCATTAATGGGCCGA+AGG | - | 20888:68279-68298 | MS.gene052254:CDS | 45.0% |
| !! | GAAGAAGTATCTTCCCTGTG+TGG | - | 20888:70153-70172 | MS.gene052254:intron | 45.0% |
| !! | TAAAGGTGCCATGGTTAGTG+TGG | - | 20888:70469-70488 | MS.gene052254:intron | 45.0% |
| !! | TGATGCTACTAAAGGTGCCA+TGG | - | 20888:70460-70479 | MS.gene052254:intron | 45.0% |
| AGACTTGTGACATACAGGGC+AGG | + | 20888:69632-69651 | MS.gene052254:intergenic | 50.0% | |
| AGCTTCAGGCACTTCCTGAT+TGG | + | 20888:70537-70556 | MS.gene052254:intergenic | 50.0% | |
| ATACTGCTCTGGCGTTTGCT+GGG | - | 20888:69741-69760 | MS.gene052254:CDS | 50.0% | |
| CAGTCCTACCACACTAACCA+TGG | + | 20888:70480-70499 | MS.gene052254:intergenic | 50.0% | |
| CATACTGGAAACCCCGTAGT+TGG | + | 20888:69998-70017 | MS.gene052254:intergenic | 50.0% | |
| CATGGTTAGTGTGGTAGGAC+TGG | - | 20888:70478-70497 | MS.gene052254:intron | 50.0% | |
| CATTGGATGGAATGTGGTGC+AGG | + | 20888:68555-68574 | MS.gene052254:intergenic | 50.0% | |
| GAAGCCATGCAGGTAATCTG+TGG | - | 20888:70328-70347 | MS.gene052254:intron | 50.0% | |
| GCTTCCAATCTTGACACTGC+AGG | + | 20888:70901-70920 | MS.gene052254:intergenic | 50.0% | |
| GGAAACTATGCTGTCTCTGG+AGG | - | 20888:70694-70713 | MS.gene052254:intron | 50.0% | |
| GGAACCTGCAGTGTCAAGAT+TGG | - | 20888:70894-70913 | MS.gene052254:intron | 50.0% | |
| GGTGCACAAGCTGTTGGAAT+GGG | - | 20888:68089-68108 | MS.gene052254:CDS | 50.0% | |
| GTGCTCAAGTGCAGACAATG+CGG | + | 20888:69398-69417 | MS.gene052254:intergenic | 50.0% | |
| GTTGTGTGATGCAGCCAATC+AGG | - | 20888:70520-70539 | MS.gene052254:intron | 50.0% | |
| TAGTAGCATCAGCAGCATCC+TGG | + | 20888:70451-70470 | MS.gene052254:intergenic | 50.0% | |
| TATACTGCTCTGGCGTTTGC+TGG | - | 20888:69740-69759 | MS.gene052254:CDS | 50.0% | |
| TGCTGCTGTTGAGCTACTTC+GGG | - | 20888:69652-69671 | MS.gene052254:intron | 50.0% | |
| ! | GCTGTCTCTGGAGGCATAAA+AGG | - | 20888:70703-70722 | MS.gene052254:intron | 50.0% |
| ! | TACAGAGGAGGTCTAAGGTC+TGG | + | 20888:69436-69455 | MS.gene052254:intergenic | 50.0% |
| AAGGTCTGGTGAGGAGGGAA+TGG | + | 20888:69422-69441 | MS.gene052254:intergenic | 55.0% | |
| ACTAAGGGGTGAAGCCATGC+AGG | - | 20888:70318-70337 | MS.gene052254:intron | 55.0% | |
| CACCTGCCACCATGAGGAAA+AGG | + | 20888:70836-70855 | MS.gene052254:intergenic | 55.0% | |
| GGTAGGACTGGACTCAGAGA+AGG | - | 20888:70490-70509 | MS.gene052254:intron | 55.0% | |
| TGGCTGCATCACACAACTGC+TGG | + | 20888:70517-70536 | MS.gene052254:intergenic | 55.0% | |
| ! | AGGAGGTCTAAGGTCTGGTG+AGG | + | 20888:69431-69450 | MS.gene052254:intergenic | 55.0% |
| ! | AGGTCTAAGGTCTGGTGAGG+AGG | + | 20888:69428-69447 | MS.gene052254:intergenic | 55.0% |
| ! | GGTCTAAGGTCTGGTGAGGA+GGG | + | 20888:69427-69446 | MS.gene052254:intergenic | 55.0% |
| ! | GGTGCCATGGTTAGTGTGGT+AGG | - | 20888:70473-70492 | MS.gene052254:intron | 55.0% |
| ! | TACTGCTCTGGCGTTTGCTG+GGG | - | 20888:69742-69761 | MS.gene052254:CDS | 55.0% |
| ! | TGCCTTTTCCTCATGGTGGC+AGG | - | 20888:70831-70850 | MS.gene052254:intron | 55.0% |
| !! | ATTAGACGGGGCTGGCTACA+TGG | - | 20888:69261-69280 | MS.gene052254:intron | 55.0% |
| !! | GGAAGTGCCTGAAGCTGAGA+AGG | - | 20888:70541-70560 | MS.gene052254:intron | 55.0% |
| GAGCTACTTCGGGCACGTGA+GGG | - | 20888:69662-69681 | MS.gene052254:intron | 60.0% | |
| TGAGCTACTTCGGGCACGTG+AGG | - | 20888:69661-69680 | MS.gene052254:intron | 60.0% | |
| ! | TGGCGTTTGCTGGGGCTTTC+AGG | - | 20888:69750-69769 | MS.gene052254:CDS | 60.0% |
| CTACTTCGGGCACGTGAGGG+AGG | - | 20888:69665-69684 | MS.gene052254:intron | 65.0% | |
| !! | GGAAAGCGCCTGCAACAGCC+AGG | + | 20888:70861-70880 | MS.gene052254:intergenic | 65.0% |
| CAGGCGCACCTGCCACCATG+AGG | + | 20888:70842-70861 | MS.gene052254:intergenic | 70.0% | |
| CAGGTGCGCCTGGCTGTTGC+AGG | - | 20888:70850-70869 | MS.gene052254:intron | 70.0% | |
| CTCATGGTGGCAGGTGCGCC+TGG | - | 20888:70840-70859 | MS.gene052254:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 20888 | gene | 68089 | 71358 | 68089 | ID=MS.gene052254 |
| 20888 | mRNA | 68089 | 71358 | 68089 | ID=MS.gene052254.t1;Parent=MS.gene052254 |
| 20888 | exon | 71273 | 71358 | 71273 | ID=MS.gene052254.t1.exon1;Parent=MS.gene052254.t1 |
| 20888 | CDS | 71273 | 71358 | 71273 | ID=cds.MS.gene052254.t1;Parent=MS.gene052254.t1 |
| 20888 | exon | 71117 | 71183 | 71117 | ID=MS.gene052254.t1.exon2;Parent=MS.gene052254.t1 |
| 20888 | CDS | 71117 | 71183 | 71117 | ID=cds.MS.gene052254.t1;Parent=MS.gene052254.t1 |
| 20888 | exon | 69676 | 69818 | 69676 | ID=MS.gene052254.t1.exon3;Parent=MS.gene052254.t1 |
| 20888 | CDS | 69676 | 69818 | 69676 | ID=cds.MS.gene052254.t1;Parent=MS.gene052254.t1 |
| 20888 | exon | 69108 | 69156 | 69108 | ID=MS.gene052254.t1.exon4;Parent=MS.gene052254.t1 |
| 20888 | CDS | 69108 | 69156 | 69108 | ID=cds.MS.gene052254.t1;Parent=MS.gene052254.t1 |
| 20888 | exon | 68858 | 68995 | 68858 | ID=MS.gene052254.t1.exon5;Parent=MS.gene052254.t1 |
| 20888 | CDS | 68858 | 68995 | 68858 | ID=cds.MS.gene052254.t1;Parent=MS.gene052254.t1 |
| 20888 | exon | 68673 | 68753 | 68673 | ID=MS.gene052254.t1.exon6;Parent=MS.gene052254.t1 |
| 20888 | CDS | 68673 | 68753 | 68673 | ID=cds.MS.gene052254.t1;Parent=MS.gene052254.t1 |
| 20888 | exon | 68418 | 68594 | 68418 | ID=MS.gene052254.t1.exon7;Parent=MS.gene052254.t1 |
| 20888 | CDS | 68418 | 68594 | 68418 | ID=cds.MS.gene052254.t1;Parent=MS.gene052254.t1 |
| 20888 | exon | 68253 | 68339 | 68253 | ID=MS.gene052254.t1.exon8;Parent=MS.gene052254.t1 |
| 20888 | CDS | 68253 | 68339 | 68253 | ID=cds.MS.gene052254.t1;Parent=MS.gene052254.t1 |
| 20888 | exon | 68089 | 68151 | 68089 | ID=MS.gene052254.t1.exon9;Parent=MS.gene052254.t1 |
| 20888 | CDS | 68089 | 68151 | 68089 | ID=cds.MS.gene052254.t1;Parent=MS.gene052254.t1 |
| Gene Sequence |
| Protein sequence |
