Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052789.t1 | PPD89707.1 | 75.3 | 691 | 149 | 2 | 69 | 737 | 27 | 717 | 0.00E+00 | 1097 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052789.t1 | Q7Y1W1 | 55.7 | 490 | 211 | 4 | 1 | 489 | 1 | 485 | 1.4e-165 | 584.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052789.t1 | G7JLT3 | 88.1 | 480 | 54 | 1 | 1 | 480 | 1 | 477 | 1.1e-246 | 862.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050099 | MS.gene052789 | 0.821985 | 3.02E-53 | -1.69E-46 |
| MS.gene052789 | MS.gene05455 | 0.803163 | 3.97E-49 | -1.69E-46 |
| MS.gene052789 | MS.gene063193 | 0.803016 | 4.26E-49 | -1.69E-46 |
| MS.gene052789 | MS.gene063195 | 0.806552 | 7.78E-50 | -1.69E-46 |
| MS.gene052789 | MS.gene068972 | 0.805883 | 1.08E-49 | -1.69E-46 |
| MS.gene052789 | MS.gene069987 | 0.813772 | 2.16E-51 | -1.69E-46 |
| MS.gene052789 | MS.gene073438 | 0.808382 | 3.18E-50 | -1.69E-46 |
| MS.gene052789 | MS.gene07596 | 0.813003 | 3.19E-51 | -1.69E-46 |
| MS.gene052789 | MS.gene08674 | 0.872312 | 3.50E-67 | -1.69E-46 |
| MS.gene052789 | MS.gene08738 | 0.82849 | 8.74E-55 | -1.69E-46 |
| MS.gene052789 | MS.gene08829 | 0.81672 | 4.78E-52 | -1.69E-46 |
| MS.gene052789 | MS.gene08982 | 0.813534 | 2.44E-51 | -1.69E-46 |
| MS.gene052789 | MS.gene09264 | 0.811024 | 8.61E-51 | -1.69E-46 |
| MS.gene052789 | MS.gene25890 | 0.803514 | 3.36E-49 | -1.69E-46 |
| MS.gene052789 | MS.gene28998 | 0.809779 | 1.60E-50 | -1.69E-46 |
| MS.gene052789 | MS.gene33456 | 0.943625 | 8.58E-103 | -1.69E-46 |
| MS.gene052789 | MS.gene33710 | 0.819815 | 9.53E-53 | -1.69E-46 |
| MS.gene052789 | MS.gene39353 | 0.846251 | 2.44E-59 | -1.69E-46 |
| MS.gene052789 | MS.gene39670 | 0.808245 | 3.40E-50 | -1.69E-46 |
| MS.gene052789 | MS.gene42327 | 0.811104 | 8.27E-51 | -1.69E-46 |
| MS.gene052789 | MS.gene42724 | 0.805745 | 1.15E-49 | -1.69E-46 |
| MS.gene052789 | MS.gene43933 | 0.814545 | 1.46E-51 | -1.69E-46 |
| MS.gene052789 | MS.gene43974 | 0.824729 | 6.89E-54 | -1.69E-46 |
| MS.gene052789 | MS.gene44915 | 0.808961 | 2.39E-50 | -1.69E-46 |
| MS.gene052789 | MS.gene58078 | 0.803134 | 4.03E-49 | -1.69E-46 |
| MS.gene052789 | MS.gene66828 | 0.843253 | 1.57E-58 | -1.69E-46 |
| MS.gene052789 | MS.gene69862 | 0.837948 | 3.84E-57 | -1.69E-46 |
| MS.gene052789 | MS.gene93379 | 0.890155 | 1.27E-73 | -1.69E-46 |
| MS.gene052789 | MS.gene99261 | 0.833169 | 6.22E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052789.t1 | MTR_4g014600 | 92.292 | 480 | 34 | 1 | 1 | 480 | 1 | 477 | 0.0 | 882 |
| MS.gene052789.t1 | MTR_4g014600 | 92.132 | 394 | 28 | 1 | 1 | 394 | 1 | 391 | 0.0 | 716 |
| MS.gene052789.t1 | MTR_4g014590 | 100.000 | 263 | 0 | 0 | 479 | 741 | 2 | 264 | 0.0 | 542 |
| MS.gene052789.t1 | MTR_7g069950 | 96.850 | 254 | 8 | 0 | 479 | 732 | 2 | 255 | 1.21e-177 | 508 |
| MS.gene052789.t1 | MTR_5g018940 | 96.800 | 250 | 8 | 0 | 479 | 728 | 2 | 251 | 3.42e-175 | 502 |
| MS.gene052789.t1 | MTR_5g018940 | 96.800 | 250 | 8 | 0 | 479 | 728 | 2 | 251 | 3.42e-175 | 502 |
| MS.gene052789.t1 | MTR_8g052030 | 96.800 | 250 | 8 | 0 | 479 | 728 | 2 | 251 | 3.42e-175 | 502 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052789.t1 | AT5G01590 | 58.907 | 494 | 189 | 7 | 1 | 489 | 1 | 485 | 0.0 | 605 |
| MS.gene052789.t1 | AT2G17360 | 91.506 | 259 | 22 | 0 | 479 | 737 | 2 | 260 | 2.14e-176 | 505 |
| MS.gene052789.t1 | AT5G07090 | 91.506 | 259 | 22 | 0 | 479 | 737 | 2 | 260 | 2.34e-176 | 505 |
| MS.gene052789.t1 | AT5G58420 | 91.506 | 259 | 22 | 0 | 479 | 737 | 2 | 260 | 3.98e-176 | 504 |
| MS.gene052789.t1 | AT5G07090 | 90.909 | 242 | 22 | 0 | 496 | 737 | 1 | 242 | 8.43e-163 | 469 |
| MS.gene052789.t1 | AT5G07090 | 90.909 | 242 | 22 | 0 | 496 | 737 | 1 | 242 | 8.43e-163 | 469 |
| MS.gene052789.t1 | AT2G17360 | 91.667 | 180 | 15 | 0 | 479 | 658 | 2 | 181 | 1.22e-117 | 352 |
Find 227 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGTCATGCCCTATTTCTT+TGG | 0.190139 | 4.4:+86215963 | MS.gene052789:CDS |
| GCACCCATCCACATGATTTA+TGG | 0.221444 | 4.4:+86214684 | MS.gene052789:CDS |
| GAAGAATTGTTGGACCATTT+TGG | 0.233980 | 4.4:-86212276 | None:intergenic |
| GAGAGAGGTGGGAGAGGGAG+TGG | 0.241917 | 4.4:-86212128 | None:intergenic |
| TGCCGCTGGCCCAAAGAAAT+AGG | 0.281357 | 4.4:-86215973 | None:intergenic |
| ATTGATGTTGCTCAAGCTAT+TGG | 0.282613 | 4.4:+86212710 | MS.gene052789:CDS |
| ATGTAGCGCTAGATAAGTTT+TGG | 0.296534 | 4.4:+86212618 | MS.gene052789:CDS |
| TGATGCGAAATTTGAGGAAT+TGG | 0.304033 | 4.4:-86212168 | None:intergenic |
| AAGAAAGTTCCGAATATTAC+TGG | 0.305251 | 4.4:+86212554 | MS.gene052789:CDS |
| TAGTCATGCCCTATTTCTTT+GGG | 0.306477 | 4.4:+86215964 | MS.gene052789:CDS |
| CTATCCAGATCCACTAATTA+AGG | 0.316510 | 4.4:+86221046 | MS.gene052789:CDS |
| GGTTCCGTCTCCACTCTGTT+AGG | 0.323873 | 4.4:+86220370 | MS.gene052789:CDS |
| CCACCATGGGTTCCTGTTAA+GGG | 0.326099 | 4.4:+86215830 | MS.gene052789:CDS |
| TTGTCAAGCATCCAATGTTT+TGG | 0.326410 | 4.4:-86219884 | None:intergenic |
| AGGCTCTATGATGTAATTAA+TGG | 0.326946 | 4.4:+86216846 | MS.gene052789:CDS |
| GGGAGAGGGAGTGGGATTGG+TGG | 0.331159 | 4.4:-86212119 | None:intergenic |
| CTCATCAGAAAATGTATAAC+TGG | 0.336241 | 4.4:-86212446 | None:intergenic |
| GACATATCCCGCTGGTTTCA+TGG | 0.336653 | 4.4:+86220177 | MS.gene052789:CDS |
| TTCTTTCACAAACTACAAAA+AGG | 0.338561 | 4.4:+86215803 | MS.gene052789:CDS |
| AGGGAGGAGAGAGGTGGGAG+AGG | 0.340237 | 4.4:-86212134 | None:intergenic |
| CCGAATATTACTGGGCTTGA+TGG | 0.342330 | 4.4:+86212563 | MS.gene052789:CDS |
| TTCCAAAGCTCTCTATCTTC+AGG | 0.344377 | 4.4:-86212533 | None:intergenic |
| CAGCGTCATGTTCTTGTTGA+TGG | 0.345107 | 4.4:+86220136 | MS.gene052789:CDS |
| TCAACCCATTCAACGGAAAC+TGG | 0.347535 | 4.4:+86212081 | MS.gene052789:CDS |
| CACTGAACTGACTACTACTT+TGG | 0.348235 | 4.4:+86215994 | MS.gene052789:CDS |
| TGTGGTGTGTGTCTGTGGTT+AGG | 0.353718 | 4.4:-86212317 | None:intergenic |
| GCAGACATACCTAAGATCTT+TGG | 0.354976 | 4.4:-86216047 | None:intergenic |
| CCATCAAGCCCAGTAATATT+CGG | 0.358656 | 4.4:-86212563 | None:intergenic |
| TTGGGCAATGTGTTTACTAT+TGG | 0.359690 | 4.4:+86221266 | MS.gene052789:CDS |
| CTTAAAACTGCTTGGGGTGG+TGG | 0.364700 | 4.4:+86214612 | MS.gene052789:CDS |
| AGTACATTCCCAAAGATCTT+AGG | 0.366281 | 4.4:+86216038 | MS.gene052789:CDS |
| GCATACACTTAAAACTGCTT+GGG | 0.372364 | 4.4:+86214605 | MS.gene052789:CDS |
| GGTGGGAGAGGGAGTGGGAT+TGG | 0.377641 | 4.4:-86212122 | None:intergenic |
| GGGAACCAGTTTCCGTTGAA+TGG | 0.379023 | 4.4:-86212086 | None:intergenic |
| TTTGGTGAATGGACCGGGTT+CGG | 0.379625 | 4.4:-86212258 | None:intergenic |
| GGAATTGGAGGTGTTGGTGG+TGG | 0.380310 | 4.4:-86212201 | None:intergenic |
| ACCACCATGGGTTCCTGTTA+AGG | 0.381373 | 4.4:+86215829 | MS.gene052789:CDS |
| TCTCTATCTTCAGGCTTATG+AGG | 0.386828 | 4.4:-86212524 | None:intergenic |
| GGGAATGTTGTCATGGTTAC+CGG | 0.387189 | 4.4:+86221134 | MS.gene052789:CDS |
| GTAATGAATGCGAGATTTCC+TGG | 0.388524 | 4.4:+86216891 | MS.gene052789:CDS |
| GCGGATGGTGCGACCATCAT+AGG | 0.388644 | 4.4:-86221024 | None:intergenic |
| CGCATTCGTAGAAGAATTGT+TGG | 0.389119 | 4.4:-86212286 | None:intergenic |
| ACCCGGTCCATTCACCAAAA+TGG | 0.389918 | 4.4:+86212262 | MS.gene052789:CDS |
| GGTGGCGGTGGTGGTGGAAT+TGG | 0.390283 | 4.4:-86212216 | None:intergenic |
| TTAGCCTTAATTAGTGGATC+TGG | 0.390639 | 4.4:-86221050 | None:intergenic |
| TTCGACGGCGGTGGCGGTGG+TGG | 0.391151 | 4.4:-86212225 | None:intergenic |
| GACGGCGGTGGCGGTGGTGG+TGG | 0.392580 | 4.4:-86212222 | None:intergenic |
| TTGATGTTGCTCAAGCTATT+GGG | 0.399807 | 4.4:+86212711 | MS.gene052789:CDS |
| GAGTGGTGTATGGTTCTATA+AGG | 0.403771 | 4.4:+86214548 | MS.gene052789:CDS |
| ATCTTTGGGAATGTACTTGT+TGG | 0.405106 | 4.4:-86216032 | None:intergenic |
| ATTTCTTGTTCCGTTGCGTT+TGG | 0.405690 | 4.4:-86212383 | None:intergenic |
| ACTTCCCATGGCCTCAATCC+TGG | 0.410006 | 4.4:-86216502 | None:intergenic |
| GACTTGTGGGGTCCAGATGA+TGG | 0.410304 | 4.4:-86220028 | None:intergenic |
| CATGAGTTTGCCACTCGGTT+GGG | 0.410419 | 4.4:+86221248 | MS.gene052789:CDS |
| CAGACATACCTAAGATCTTT+GGG | 0.412032 | 4.4:-86216046 | None:intergenic |
| TGCATACACTTAAAACTGCT+TGG | 0.416294 | 4.4:+86214604 | MS.gene052789:CDS |
| TTAAAACTGCTTGGGGTGGT+GGG | 0.417274 | 4.4:+86214613 | MS.gene052789:CDS |
| ATCTTCGACGGCGGTGGCGG+TGG | 0.417448 | 4.4:-86212228 | None:intergenic |
| GGGAGGAGAGAGGTGGGAGA+GGG | 0.418922 | 4.4:-86212133 | None:intergenic |
| TGGAGCGTGCAATCGCTACT+TGG | 0.423767 | 4.4:+86214709 | MS.gene052789:CDS |
| GGTGGAATTGGAGGTGTTGG+TGG | 0.424099 | 4.4:-86212204 | None:intergenic |
| AAGTTGGCTAAACTAATTCC+AGG | 0.428800 | 4.4:+86216484 | MS.gene052789:CDS |
| ATGGTTCTATAAGGATCGGC+TGG | 0.431622 | 4.4:+86214557 | MS.gene052789:CDS |
| TGAGAAGGGAGGAGAGAGGT+GGG | 0.431629 | 4.4:-86212139 | None:intergenic |
| TGGGGTCCAGATGATGGCTT+TGG | 0.432297 | 4.4:-86220022 | None:intergenic |
| GCTAATGATGGCCTCTGGCC+TGG | 0.434082 | 4.4:+86215929 | MS.gene052789:CDS |
| TGGCAAAGGCCTTATCCTCC+TGG | 0.436674 | 4.4:+86212680 | MS.gene052789:CDS |
| TCTAATATATTTCAGGCAAG+AGG | 0.437872 | 4.4:+86219830 | MS.gene052789:intron |
| CATTGGATGCTTGACAAACT+TGG | 0.449684 | 4.4:+86219890 | MS.gene052789:CDS |
| TCTTTGGGAATGTACTTGTT+GGG | 0.450292 | 4.4:-86216031 | None:intergenic |
| CATTACATCACCCGCCAGAT+TGG | 0.451225 | 4.4:-86216874 | None:intergenic |
| AATTAATGGCATCGCCAATC+TGG | 0.452261 | 4.4:+86216860 | MS.gene052789:CDS |
| GGAACCAGTTTCCGTTGAAT+GGG | 0.452933 | 4.4:-86212085 | None:intergenic |
| ATCGGCTTCCCAGGAGGATA+AGG | 0.453853 | 4.4:-86212689 | None:intergenic |
| TTCATCTTCGACGGCGGTGG+CGG | 0.454233 | 4.4:-86212231 | None:intergenic |
| GGTGTTGGTGGTGGAGAGGG+AGG | 0.455281 | 4.4:-86212192 | None:intergenic |
| TTATCATGAGGAGTGGTGTA+TGG | 0.457939 | 4.4:+86214538 | MS.gene052789:CDS |
| GGAGGTGTTGGTGGTGGAGA+GGG | 0.458009 | 4.4:-86212195 | None:intergenic |
| AAGGCACTCCCTTGACTTGT+GGG | 0.458121 | 4.4:-86220041 | None:intergenic |
| ACTGACTACTACTTTGGAAC+AGG | 0.459475 | 4.4:+86216000 | MS.gene052789:CDS |
| AAAGTTCGATCTGTTCAATT+CGG | 0.459883 | 4.4:+86220975 | MS.gene052789:CDS |
| GCCGCTGGCCCAAAGAAATA+GGG | 0.460604 | 4.4:-86215972 | None:intergenic |
| AGAGAGGTGGGAGAGGGAGT+GGG | 0.463259 | 4.4:-86212127 | None:intergenic |
| GTGTCATTAGCCTTAATTAG+TGG | 0.466445 | 4.4:-86221056 | None:intergenic |
| CAGGCACCAAAGCCATCATC+TGG | 0.471057 | 4.4:+86220016 | MS.gene052789:intron |
| GGTGGTGGAATTGGAGGTGT+TGG | 0.472723 | 4.4:-86212207 | None:intergenic |
| TCATGAGTTTGCCACTCGGT+TGG | 0.474930 | 4.4:+86221247 | MS.gene052789:CDS |
| AGGAATTGGAGAGATTGAGA+AGG | 0.477989 | 4.4:-86212154 | None:intergenic |
| GTGGTGTGTGTCTGTGGTTA+GGG | 0.481097 | 4.4:-86212316 | None:intergenic |
| CATATTTCAGTCTGTTTCGC+AGG | 0.481155 | 4.4:-86220078 | None:intergenic |
| GGCGGTGGTGGTGGAATTGG+AGG | 0.482953 | 4.4:-86212213 | None:intergenic |
| ACACAGGTCCACCATTCATC+AGG | 0.484693 | 4.4:+86216599 | MS.gene052789:CDS |
| TCAGTCTGTTTCGCAGGATG+AGG | 0.485002 | 4.4:-86220072 | None:intergenic |
| CAAGAACAGAGAGAAACATA+AGG | 0.485349 | 4.4:+86221187 | MS.gene052789:CDS |
| GGAGGTTGATGCGAAATTTG+AGG | 0.485587 | 4.4:-86212174 | None:intergenic |
| CTAAACTAATTCCAGGATTG+AGG | 0.489998 | 4.4:+86216491 | MS.gene052789:CDS |
| ACCATCATAGGTGTTCAGAT+AGG | 0.491470 | 4.4:-86221012 | None:intergenic |
| ATCTGTTCAATTCGGACAGA+AGG | 0.492212 | 4.4:+86220983 | MS.gene052789:CDS |
| TTCTTGTTGATGGCAAGGTT+AGG | 0.493369 | 4.4:+86220146 | MS.gene052789:CDS |
| GATTTCATCAAGTTTGATGT+GGG | 0.494323 | 4.4:+86221113 | MS.gene052789:CDS |
| CCCTATCTGAACACCTATGA+TGG | 0.494508 | 4.4:+86221011 | MS.gene052789:CDS |
| ACATATCCCGCTGGTTTCAT+GGG | 0.495686 | 4.4:+86220178 | MS.gene052789:CDS |
| TAATTCCAGGATTGAGGCCA+TGG | 0.496414 | 4.4:+86216497 | MS.gene052789:CDS |
| GGGTCGAACCCGAGGGCCAT+TGG | 0.498011 | 4.4:+86214578 | MS.gene052789:CDS |
| ATGGATCGAATAACATTCAA+TGG | 0.501205 | 4.4:+86216544 | MS.gene052789:CDS |
| TTGAGAAGGGAGGAGAGAGG+TGG | 0.501356 | 4.4:-86212140 | None:intergenic |
| GTTCCGTCTCCACTCTGTTA+GGG | 0.502187 | 4.4:+86220371 | MS.gene052789:CDS |
| TGGAGGTGTTGGTGGTGGAG+AGG | 0.507443 | 4.4:-86212196 | None:intergenic |
| GCATTCCAACGCCTGATGAA+TGG | 0.508612 | 4.4:-86216610 | None:intergenic |
| GTATCTCTTCCCAAGGGAAA+AGG | 0.508790 | 4.4:+86221308 | MS.gene052789:CDS |
| GCAACATCAATCGGCTTCCC+AGG | 0.509357 | 4.4:-86212698 | None:intergenic |
| TTGGCAAGGGAACAAAGCCT+TGG | 0.509969 | 4.4:+86221285 | MS.gene052789:CDS |
| GGAATTGGAGAGATTGAGAA+GGG | 0.510150 | 4.4:-86212153 | None:intergenic |
| GAGACGTGATTTAGCAGTGA+TGG | 0.511406 | 4.4:+86215904 | MS.gene052789:CDS |
| GAAGGCACTCCCTTGACTTG+TGG | 0.511811 | 4.4:-86220042 | None:intergenic |
| GTCTTCATCTTCGACGGCGG+TGG | 0.511812 | 4.4:-86212234 | None:intergenic |
| ATCAACTTCAACCCATTCAA+CGG | 0.512505 | 4.4:+86212074 | MS.gene052789:CDS |
| CAAGTTGACTGTTATTGAAG+AGG | 0.512862 | 4.4:+86221334 | MS.gene052789:CDS |
| ATAGCTTGAGCAACATCAAT+CGG | 0.513604 | 4.4:-86212707 | None:intergenic |
| GACTCAATGCTCCAAAACAT+TGG | 0.516338 | 4.4:+86219873 | MS.gene052789:CDS |
| TAAAACTGCTTGGGGTGGTG+GGG | 0.516930 | 4.4:+86214614 | MS.gene052789:CDS |
| AGTAGTCAGTTCAGTGCCGC+TGG | 0.518023 | 4.4:-86215987 | None:intergenic |
| CATCCACATGATTTATGGAA+TGG | 0.519518 | 4.4:+86214689 | MS.gene052789:CDS |
| CCATCATAGGTGTTCAGATA+GGG | 0.524783 | 4.4:-86221011 | None:intergenic |
| GGCAAAGGCCTTATCCTCCT+GGG | 0.525192 | 4.4:+86212681 | MS.gene052789:CDS |
| TGCCGAGAAAAGCGCAGTCA+CGG | 0.525298 | 4.4:+86212594 | MS.gene052789:CDS |
| GCTGTGAGATAGACAGAAGT+TGG | 0.526546 | 4.4:+86216468 | MS.gene052789:intron |
| CAATGTGTTTACTATTGGCA+AGG | 0.529290 | 4.4:+86221271 | MS.gene052789:CDS |
| AGCCTGAAGATAGAGAGCTT+TGG | 0.530064 | 4.4:+86212531 | MS.gene052789:CDS |
| GAAGATGAAGACGCCGAACC+CGG | 0.531751 | 4.4:+86212245 | MS.gene052789:CDS |
| TGATTTCATCAAGTTTGATG+TGG | 0.535228 | 4.4:+86221112 | MS.gene052789:CDS |
| GCCCTATTTCTTTGGGCCAG+CGG | 0.535335 | 4.4:+86215971 | MS.gene052789:CDS |
| ATGCAATGCCAATGGCCCTC+GGG | 0.536053 | 4.4:-86214586 | None:intergenic |
| TCATGTTCTTGTTGATGGCA+AGG | 0.537954 | 4.4:+86220141 | MS.gene052789:CDS |
| TGAAGAGGCTAGAAAGAGGC+AGG | 0.540159 | 4.4:+86221349 | MS.gene052789:CDS |
| CATCTGGACCCCACAAGTCA+AGG | 0.541796 | 4.4:+86220032 | MS.gene052789:CDS |
| CTAATATATTTCAGGCAAGA+GGG | 0.544568 | 4.4:+86219831 | MS.gene052789:intron |
| TGGCAAGGGAACAAAGCCTT+GGG | 0.546208 | 4.4:+86221286 | MS.gene052789:CDS |
| CAAAGAAATAGGGCATGACT+AGG | 0.546517 | 4.4:-86215962 | None:intergenic |
| TGGAAGCTAATGATGGCCTC+TGG | 0.547585 | 4.4:+86215924 | MS.gene052789:CDS |
| AATGGCATCGCCAATCTGGC+GGG | 0.552417 | 4.4:+86216864 | MS.gene052789:CDS |
| GATCGGCTGGGTCGAACCCG+AGG | 0.552442 | 4.4:+86214570 | MS.gene052789:CDS |
| ACGACCTCTATTCCTTCCTC+CGG | 0.553480 | 4.4:-86221153 | None:intergenic |
| AAGAACAGAGAGAAACATAA+GGG | 0.554158 | 4.4:+86221188 | MS.gene052789:CDS |
| GCCTTGGGTATCTCTTCCCA+AGG | 0.555309 | 4.4:+86221301 | MS.gene052789:CDS |
| TGACTTGTGGTGTGTGTCTG+TGG | 0.555576 | 4.4:-86212322 | None:intergenic |
| AGATTGAGAAGGGAGGAGAG+AGG | 0.556386 | 4.4:-86212143 | None:intergenic |
| TCAGGCGTTGGAATGCCGAC+AGG | 0.556543 | 4.4:+86216617 | MS.gene052789:CDS |
| TGATGTGGGGAATGTTGTCA+TGG | 0.557070 | 4.4:+86221127 | MS.gene052789:CDS |
| TTCGGCGTCTTCATCTTCGA+CGG | 0.561440 | 4.4:-86212240 | None:intergenic |
| GGAGCGTGCAATCGCTACTT+GGG | 0.564345 | 4.4:+86214710 | MS.gene052789:CDS |
| CGTGCAATCGCTACTTGGGA+AGG | 0.564518 | 4.4:+86214714 | MS.gene052789:CDS |
| TATGCAATGCCAATGGCCCT+CGG | 0.567783 | 4.4:-86214587 | None:intergenic |
| TTGAGGACTTTGTTGACTTG+TGG | 0.570285 | 4.4:-86212335 | None:intergenic |
| GGCGTCTTCATCTTCGACGG+CGG | 0.573632 | 4.4:-86212237 | None:intergenic |
| AACATGACGCTGCATCAAGA+TGG | 0.573994 | 4.4:-86220125 | None:intergenic |
| GACCACTTGCATCCTGAACA+TGG | 0.574639 | 4.4:-86221226 | None:intergenic |
| GCAGCTTCAACATGAGGCGG+TGG | 0.574913 | 4.4:+86215874 | MS.gene052789:CDS |
| TGTACGAACCAAGTGGTTCA+CGG | 0.575523 | 4.4:-86216576 | None:intergenic |
| GTCCACCATTCATCAGGCGT+TGG | 0.577924 | 4.4:+86216605 | MS.gene052789:CDS |
| CATTCCATAAATCATGTGGA+TGG | 0.578067 | 4.4:-86214688 | None:intergenic |
| TAATGGCATCGCCAATCTGG+CGG | 0.578144 | 4.4:+86216863 | MS.gene052789:CDS |
| AGAAAGTTCCGAATATTACT+GGG | 0.578755 | 4.4:+86212555 | MS.gene052789:CDS |
| TGACTAGGAATTCTAACTCC+AGG | 0.578909 | 4.4:-86215947 | None:intergenic |
| CACATACCCATGAAACCAGC+GGG | 0.579767 | 4.4:-86220184 | None:intergenic |
| ATTGGAGAGATTGAGAAGGG+AGG | 0.579818 | 4.4:-86212150 | None:intergenic |
| TGTTAGGGATGATGAGGCAA+AGG | 0.579828 | 4.4:+86220386 | MS.gene052789:CDS |
| GTGGAGACGGAACCGACCCT+TGG | 0.581652 | 4.4:-86220361 | None:intergenic |
| TTGTCATGGTTACCGGAGGA+AGG | 0.582711 | 4.4:+86221141 | MS.gene052789:CDS |
| TGGATGCTTGACAAACTTGG+TGG | 0.583185 | 4.4:+86219893 | MS.gene052789:CDS |
| CATCCCTAACAGAGTGGAGA+CGG | 0.583367 | 4.4:-86220374 | None:intergenic |
| TCTGAGCATAGAACAAGCAA+TGG | 0.583742 | 4.4:+86216525 | MS.gene052789:CDS |
| GATTTAGTTATCATGAGGAG+TGG | 0.591381 | 4.4:+86214531 | MS.gene052789:intron |
| TCTATGCTCAGAACTTCCCA+TGG | 0.595336 | 4.4:-86216514 | None:intergenic |
| ATCTGGACCCCACAAGTCAA+GGG | 0.597269 | 4.4:+86220033 | MS.gene052789:CDS |
| TCTGTTCAATTCGGACAGAA+GGG | 0.598687 | 4.4:+86220984 | MS.gene052789:CDS |
| CCACTCTGTTAGGGATGATG+AGG | 0.598797 | 4.4:+86220380 | MS.gene052789:CDS |
| AGGCACTCCCTTGACTTGTG+GGG | 0.598802 | 4.4:-86220040 | None:intergenic |
| GTGTATGGTTCTATAAGGAT+CGG | 0.600110 | 4.4:+86214553 | MS.gene052789:CDS |
| GTTACCGGAGGAAGGAATAG+AGG | 0.602203 | 4.4:+86221149 | MS.gene052789:CDS |
| GAATGGTACCGTGAACCACT+TGG | 0.603216 | 4.4:+86216568 | MS.gene052789:CDS |
| AGCTGATAAGATGAATGAGT+GGG | 0.603762 | 4.4:+86212481 | MS.gene052789:CDS |
| TTTCGCAGGATGAGGATCAA+AGG | 0.605453 | 4.4:-86220064 | None:intergenic |
| CGTCTTCTGTATGACACCAA+GGG | 0.605611 | 4.4:+86220345 | MS.gene052789:CDS |
| TTATTGAAGAGGCTAGAAAG+AGG | 0.605630 | 4.4:+86221345 | MS.gene052789:CDS |
| CCGTCTTCTGTATGACACCA+AGG | 0.606098 | 4.4:+86220344 | MS.gene052789:CDS |
| TGGTTCTATAAGGATCGGCT+GGG | 0.606157 | 4.4:+86214558 | MS.gene052789:CDS |
| GCAGTGATGGAAGCTAATGA+TGG | 0.607053 | 4.4:+86215917 | MS.gene052789:CDS |
| TTAAGTGTATGCAATGCCAA+TGG | 0.608483 | 4.4:-86214594 | None:intergenic |
| CCTTGGTGTCATACAGAAGA+CGG | 0.610727 | 4.4:-86220344 | None:intergenic |
| ATTCCATAAATCATGTGGAT+GGG | 0.612495 | 4.4:-86214687 | None:intergenic |
| AATGTGTTTACTATTGGCAA+GGG | 0.614045 | 4.4:+86221272 | MS.gene052789:CDS |
| GAATAACATTCAATGGCGAA+TGG | 0.615395 | 4.4:+86216551 | MS.gene052789:CDS |
| TATTTGATTTAGTTATCATG+AGG | 0.616799 | 4.4:+86214526 | MS.gene052789:intron |
| GGAAGGAATAGAGGTCGTGT+TGG | 0.618743 | 4.4:+86221158 | MS.gene052789:CDS |
| GTGGTCATGAGTTTGCCACT+CGG | 0.619011 | 4.4:+86221243 | MS.gene052789:CDS |
| TTCCAACGCCTGATGAATGG+TGG | 0.620251 | 4.4:-86216607 | None:intergenic |
| CATACACTTAAAACTGCTTG+GGG | 0.623287 | 4.4:+86214606 | MS.gene052789:CDS |
| ATTTCATCAAGTTTGATGTG+GGG | 0.625090 | 4.4:+86221114 | MS.gene052789:CDS |
| TAGCTGATAAGATGAATGAG+TGG | 0.625483 | 4.4:+86212480 | MS.gene052789:CDS |
| GCGTTGGAATGCCGACAGGA+TGG | 0.626966 | 4.4:+86216621 | MS.gene052789:CDS |
| ATCGGCTGGGTCGAACCCGA+GGG | 0.629123 | 4.4:+86214571 | MS.gene052789:CDS |
| TTCTGTATGACACCAAGGGT+CGG | 0.629625 | 4.4:+86220349 | MS.gene052789:CDS |
| TAGTGGATCTGGATAGCGGA+TGG | 0.630246 | 4.4:-86221039 | None:intergenic |
| GCTCCATTCCATAAATCATG+TGG | 0.634373 | 4.4:-86214692 | None:intergenic |
| TTATAAGCAGCTTCAACATG+AGG | 0.638676 | 4.4:+86215868 | MS.gene052789:CDS |
| CCCTTAACAGGAACCCATGG+TGG | 0.643315 | 4.4:-86215830 | None:intergenic |
| AATTCCAGGATTGAGGCCAT+GGG | 0.643550 | 4.4:+86216498 | MS.gene052789:CDS |
| GCAGGATGAGGATCAAAGGA+AGG | 0.644782 | 4.4:-86220060 | None:intergenic |
| TAATTAGTGGATCTGGATAG+CGG | 0.647434 | 4.4:-86221043 | None:intergenic |
| ATCCATGTTCAGGATGCAAG+TGG | 0.648183 | 4.4:+86221224 | MS.gene052789:CDS |
| AATCCCTTAACAGGAACCCA+TGG | 0.648355 | 4.4:-86215833 | None:intergenic |
| ACACTTAAAACTGCTTGGGG+TGG | 0.657410 | 4.4:+86214609 | MS.gene052789:CDS |
| CCCTTGGGAAGAGATACCCA+AGG | 0.659442 | 4.4:-86221302 | None:intergenic |
| TAAGCAGCTTCAACATGAGG+CGG | 0.663272 | 4.4:+86215871 | MS.gene052789:CDS |
| CCTCATCATCCCTAACAGAG+TGG | 0.666127 | 4.4:-86220380 | None:intergenic |
| GAATTCTAACTCCAGGCCAG+AGG | 0.668583 | 4.4:-86215940 | None:intergenic |
| AGACACACTTACCATCCTGT+CGG | 0.669599 | 4.4:-86216632 | None:intergenic |
| CGAAGTTAAACCAAACGCAA+CGG | 0.670466 | 4.4:+86212373 | MS.gene052789:CDS |
| ACATCAATCGGCTTCCCAGG+AGG | 0.676929 | 4.4:-86212695 | None:intergenic |
| CCTTGGGTATCTCTTCCCAA+GGG | 0.683663 | 4.4:+86221302 | MS.gene052789:CDS |
| ACAGACAAGACATATCCCGC+TGG | 0.683859 | 4.4:+86220169 | MS.gene052789:CDS |
| CCACTTGGTTCGTACAACAC+AGG | 0.683947 | 4.4:+86216583 | MS.gene052789:CDS |
| AATGTTGTCATGGTTACCGG+AGG | 0.684540 | 4.4:+86221137 | MS.gene052789:CDS |
| GCACATACCCATGAAACCAG+CGG | 0.695365 | 4.4:-86220185 | None:intergenic |
| AAACACATTGCCCAACCGAG+TGG | 0.706925 | 4.4:-86221258 | None:intergenic |
| CCTGTGTTGTACGAACCAAG+TGG | 0.802878 | 4.4:-86216583 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 86212065 | 86221397 | 86212065 | ID=MS.gene052789 |
| chr4.4 | mRNA | 86212065 | 86221397 | 86212065 | ID=MS.gene052789.t1;Parent=MS.gene052789 |
| chr4.4 | exon | 86212065 | 86212764 | 86212065 | ID=MS.gene052789.t1.exon1;Parent=MS.gene052789.t1 |
| chr4.4 | CDS | 86212065 | 86212764 | 86212065 | ID=cds.MS.gene052789.t1;Parent=MS.gene052789.t1 |
| chr4.4 | exon | 86214538 | 86214735 | 86214538 | ID=MS.gene052789.t1.exon2;Parent=MS.gene052789.t1 |
| chr4.4 | CDS | 86214538 | 86214735 | 86214538 | ID=cds.MS.gene052789.t1;Parent=MS.gene052789.t1 |
| chr4.4 | exon | 86215777 | 86216059 | 86215777 | ID=MS.gene052789.t1.exon3;Parent=MS.gene052789.t1 |
| chr4.4 | CDS | 86215777 | 86216059 | 86215777 | ID=cds.MS.gene052789.t1;Parent=MS.gene052789.t1 |
| chr4.4 | exon | 86216480 | 86216642 | 86216480 | ID=MS.gene052789.t1.exon4;Parent=MS.gene052789.t1 |
| chr4.4 | CDS | 86216480 | 86216642 | 86216480 | ID=cds.MS.gene052789.t1;Parent=MS.gene052789.t1 |
| chr4.4 | exon | 86216846 | 86216935 | 86216846 | ID=MS.gene052789.t1.exon5;Parent=MS.gene052789.t1 |
| chr4.4 | CDS | 86216846 | 86216935 | 86216846 | ID=cds.MS.gene052789.t1;Parent=MS.gene052789.t1 |
| chr4.4 | exon | 86219845 | 86219922 | 86219845 | ID=MS.gene052789.t1.exon6;Parent=MS.gene052789.t1 |
| chr4.4 | CDS | 86219845 | 86219922 | 86219845 | ID=cds.MS.gene052789.t1;Parent=MS.gene052789.t1 |
| chr4.4 | exon | 86220019 | 86220199 | 86220019 | ID=MS.gene052789.t1.exon7;Parent=MS.gene052789.t1 |
| chr4.4 | CDS | 86220019 | 86220199 | 86220019 | ID=cds.MS.gene052789.t1;Parent=MS.gene052789.t1 |
| chr4.4 | exon | 86220310 | 86220407 | 86220310 | ID=MS.gene052789.t1.exon8;Parent=MS.gene052789.t1 |
| chr4.4 | CDS | 86220310 | 86220407 | 86220310 | ID=cds.MS.gene052789.t1;Parent=MS.gene052789.t1 |
| chr4.4 | exon | 86220963 | 86221397 | 86220963 | ID=MS.gene052789.t1.exon9;Parent=MS.gene052789.t1 |
| chr4.4 | CDS | 86220963 | 86221397 | 86220963 | ID=cds.MS.gene052789.t1;Parent=MS.gene052789.t1 |
| Gene Sequence |
| Protein sequence |
