AlfalfaGEDB | MS.gene09802

M. sativa cultivar XinJiangDaYe / MS.gene09802

KEGG: K08065
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09802.t1	AES79326.2	98.8	167	0	1	1	165	1	167	2.10E-84	321.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09802.t1	Q8VYK4	72.2	169	38	6	1	160	1	169	9.5e-57	221.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09802.t1	G7L4J2	98.8	167	0	1	1	165	1	167	1.5e-84	321.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene09802.t1	TF	NF-YB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049180	MS.gene09802	0.840128	1.05E-57	-1.69E-46
MS.gene050818	MS.gene09802	0.809673	1.68E-50	-1.69E-46
MS.gene050894	MS.gene09802	0.826611	2.47E-54	-1.69E-46
MS.gene051963	MS.gene09802	0.800061	1.72E-48	-1.69E-46
MS.gene052494	MS.gene09802	0.841727	3.99E-58	-1.69E-46
MS.gene05470	MS.gene09802	-0.804255	2.36E-49	-1.69E-46
MS.gene055719	MS.gene09802	0.829937	3.89E-55	-1.69E-46
MS.gene056063	MS.gene09802	0.814332	1.63E-51	-1.69E-46
MS.gene060076	MS.gene09802	0.807676	4.50E-50	-1.69E-46
MS.gene061044	MS.gene09802	0.802015	6.86E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09802.t1	MTR_7g061270	98.802	167	0	1	1	165	1	167	2.05e-121	339
MS.gene09802.t1	MTR_7g100650	98.742	159	0	1	1	157	1	159	4.82e-115	323
MS.gene09802.t1	MTR_1g072790	73.718	156	28	5	12	158	11	162	4.58e-74	220
MS.gene09802.t1	MTR_3g058980	72.308	130	27	3	9	137	13	134	3.14e-59	182
MS.gene09802.t1	MTR_2g026710	71.311	122	26	1	1	122	1	113	3.49e-59	182
MS.gene09802.t1	MTR_5g095740	72.951	122	27	2	10	129	9	126	5.54e-58	179
MS.gene09802.t1	MTR_8g091720	78.095	105	23	0	11	115	13	117	1.46e-56	176
MS.gene09802.t1	MTR_8g093920	79.121	91	19	0	25	115	39	129	9.11e-53	167
MS.gene09802.t1	MTR_0392s0020	55.372	121	49	1	24	144	16	131	1.39e-48	154
MS.gene09802.t1	MTR_4g133938	70.588	102	30	0	14	115	7	108	1.46e-48	154

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09802.t1	AT2G37060	74.850	167	27	7	1	158	1	161	5.62e-79	232
MS.gene09802.t1	AT2G37060	74.850	167	27	7	1	158	1	161	5.62e-79	232
MS.gene09802.t1	AT2G37060	74.850	167	27	7	1	158	1	161	5.62e-79	232
MS.gene09802.t1	AT3G53340	77.551	147	26	4	17	157	19	164	5.76e-76	224
MS.gene09802.t1	AT3G53340	77.551	147	26	4	17	157	19	164	5.76e-76	224
MS.gene09802.t1	AT2G38880	76.923	130	25	1	1	130	1	125	9.66e-71	210
MS.gene09802.t1	AT2G38880	75.758	132	25	2	1	130	1	127	7.73e-69	205
MS.gene09802.t1	AT2G38880	75.758	132	25	2	1	130	1	127	1.03e-68	205
MS.gene09802.t1	AT2G38880	75.758	132	25	2	1	130	1	127	1.03e-68	205
MS.gene09802.t1	AT2G38880	75.758	132	25	2	1	130	1	127	1.03e-68	205

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Find 45 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGCAGCTTGTTCATCA+AGG	0.514442	7.3:-12233034	MS.gene09802:intron
AACGGTTTCCTTAGCATCTT+TGG	0.251977	7.3:+12234017	None:intergenic
ACGGTCTTGTTCACGGATGT+TGG	0.478749	7.3:+12234104	None:intergenic
ACTAAGGGCTCTGCCAAGGG+TGG	0.614551	7.3:-12233209	MS.gene09802:CDS
ACTCCGGCGAGTCCTGGCGG+CGG	0.562769	7.3:-12234159	MS.gene09802:CDS
AGATGCTAAGGAAACCGTTC+AGG	0.443640	7.3:-12234013	MS.gene09802:CDS
ATAAGTGTCAGAGAGAGAAG+AGG	0.595900	7.3:-12233865	MS.gene09802:CDS
ATGCGGCTGATGTTAGCGAT+AGG	0.621968	7.3:+12234075	None:intergenic
CACTACTCTCTAAAATGCTA+AGG	0.528875	7.3:-12232970	MS.gene09802:CDS
CATCAAGGTTCTTTCTCACA+AGG	0.487515	7.3:-12233019	MS.gene09802:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTCAAGCAATGAAAGAA+AGG	+	chr7.3:12233628-12233647	None:intergenic	30.0%
CTTGTAAGGTAAATCTTAAG+AGG	+	chr7.3:12233353-12233372	None:intergenic	30.0%
GATATTTGTGGAGATACTTT+AGG	+	chr7.3:12233772-12233791	None:intergenic	30.0%
TATCTCCACAAATATCAATG+TGG	-	chr7.3:12233776-12233795	MS.gene09802:CDS	30.0%
AAAAAAGCTCTTCCTGCTAA+TGG	-	chr7.3:12233078-12233097	MS.gene09802:intron	35.0%
AATTCCGTATAGATTGTCAG+AGG	+	chr7.3:12233482-12233501	None:intergenic	35.0%
ATGTATGTGTTTACTACCTG+AGG	+	chr7.3:12233983-12234002	None:intergenic	35.0%
CAATGTGGTGTGATTTGATT+GGG	-	chr7.3:12233791-12233810	MS.gene09802:CDS	35.0%
CTTCACTGTACCATGTTTAT+AGG	-	chr7.3:12233740-12233759	MS.gene09802:intron	35.0%
GGCAAAAAAGATGTTCAACA+AGG	-	chr7.3:12233950-12233969	MS.gene09802:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	12232958	12234190	12232958	ID=MS.gene09802
chr7.3	mRNA	12232958	12234190	12232958	ID=MS.gene09802.t1;Parent=MS.gene09802
chr7.3	exon	12233976	12234190	12233976	ID=MS.gene09802.t1.exon1;Parent=MS.gene09802.t1
chr7.3	CDS	12233976	12234190	12233976	ID=cds.MS.gene09802.t1;Parent=MS.gene09802.t1
chr7.3	exon	12233766	12233895	12233766	ID=MS.gene09802.t1.exon2;Parent=MS.gene09802.t1
chr7.3	CDS	12233766	12233895	12233766	ID=cds.MS.gene09802.t1;Parent=MS.gene09802.t1
chr7.3	exon	12233163	12233237	12233163	ID=MS.gene09802.t1.exon3;Parent=MS.gene09802.t1
chr7.3	CDS	12233163	12233237	12233163	ID=cds.MS.gene09802.t1;Parent=MS.gene09802.t1
chr7.3	exon	12232958	12233047	12232958	ID=MS.gene09802.t1.exon4;Parent=MS.gene09802.t1
chr7.3	CDS	12232958	12233047	12232958	ID=cds.MS.gene09802.t1;Parent=MS.gene09802.t1

Gene Sequence

>MS.gene09802

ATGTCCGAAACTCCGGCGAGTCCTGGCGGCGGCAGCCACGAAAGCGGCGAACACAGTCCTCGTTCCAACATCCGTGAACAAGACCGTTTCCTTCCTATCGCTAACATCAGCCGCATCATGAAAAAAGCTCTTCCTGCTAATGGTAAAATCGCCAAAGATGCTAAGGAAACCGTTCAGGAATGTGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGTACGATTTTCAAATCATCCTTACTTTCTTTTTCTTACTTTTTAGTTTTATTTTCATTGATTTGATGTTTAATTGTTTAGGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAGACGATTAACGGTGATGATTTGCTTTGGGCGATGGCTACTTTAGGGTTTGAGGATTATATTGATCCTCTTAAGATTTACCTTACAAGATACAGAGAGGTTAGGTTATTTTAATTTACTACTCTTTTTATTTTACTTTTACTTTTACTTTATAAGCTTTTCTGGTCCCCCAGTGAAAATTAATGTCAATTGGGTCCTCTGACAATCTATACGGAATTAATTTCAAGTTTTTAGTTTTTTAATTTTATTATTGCTATTGTACTTTTTAACTGATGGTAAATTTTTTTCATTGCTTTGTCATGGGTCGATTGGAAATGTTGCAGATGGAGGTAATTTCAAATCCTTTCTTTCATTGCTTGAACTTGAATATATTTGCAGCTTAACAATTGTCGTTTGAGATTAGTTTTTTTGCACTGATGGTGTCAAGTTTTCTTACACATACATCTAATCAAATCACTTCACTGTACCATGTTTATAGGCTAGTTCCTAAAGTATCTCCACAAATATCAATGTGGTGTGATTTGATTGGGTTAATGTGTAAAAAAGTTTTACACTTTCAATGTTTTGGAATAGGTTTCTGTGATTTTTTGGCGTGCACGAATCTATGTTTTATTTGTGGTGTTTCAGGGTGATACTAAGGGCTCTGCCAAGGGTGGAGACACATCTGGCAAAAAAGATGTTCAACAAGGTTCTAATCCTCAGGTAGTAAACACATACATACACACGAATTATGCGTGATTTTATAGCCGGAGAACACACCCCTAGAAACAATTAGAAAAGTAGTATCTGATTTTGTCATATTTTGTTGAAATTGCAGCTTGTTCATCAAGGTTCTTTCTCACAAGGTGTTTCCTACACAAATTCTCAGGTAACACTACTCTCTAAAATGCTAAGGCTGTTGTATTGA

Protein sequence

>MS.gene09802.t1

MSETPASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSAKGGDTSGKKDVQQGSNPQLVHQGSFSQGVSYTNSQVTLLSKMLRLLY