Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09802.t1 | AES79326.2 | 98.8 | 167 | 0 | 1 | 1 | 165 | 1 | 167 | 2.10E-84 | 321.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09802.t1 | Q8VYK4 | 72.2 | 169 | 38 | 6 | 1 | 160 | 1 | 169 | 9.5e-57 | 221.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09802.t1 | G7L4J2 | 98.8 | 167 | 0 | 1 | 1 | 165 | 1 | 167 | 1.5e-84 | 321.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene09802.t1 | TF | NF-YB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene09802 | 0.840128 | 1.05E-57 | -1.69E-46 |
| MS.gene050818 | MS.gene09802 | 0.809673 | 1.68E-50 | -1.69E-46 |
| MS.gene050894 | MS.gene09802 | 0.826611 | 2.47E-54 | -1.69E-46 |
| MS.gene051963 | MS.gene09802 | 0.800061 | 1.72E-48 | -1.69E-46 |
| MS.gene052494 | MS.gene09802 | 0.841727 | 3.99E-58 | -1.69E-46 |
| MS.gene05470 | MS.gene09802 | -0.804255 | 2.36E-49 | -1.69E-46 |
| MS.gene055719 | MS.gene09802 | 0.829937 | 3.89E-55 | -1.69E-46 |
| MS.gene056063 | MS.gene09802 | 0.814332 | 1.63E-51 | -1.69E-46 |
| MS.gene060076 | MS.gene09802 | 0.807676 | 4.50E-50 | -1.69E-46 |
| MS.gene061044 | MS.gene09802 | 0.802015 | 6.86E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09802.t1 | MTR_7g061270 | 98.802 | 167 | 0 | 1 | 1 | 165 | 1 | 167 | 2.05e-121 | 339 |
| MS.gene09802.t1 | MTR_7g100650 | 98.742 | 159 | 0 | 1 | 1 | 157 | 1 | 159 | 4.82e-115 | 323 |
| MS.gene09802.t1 | MTR_1g072790 | 73.718 | 156 | 28 | 5 | 12 | 158 | 11 | 162 | 4.58e-74 | 220 |
| MS.gene09802.t1 | MTR_3g058980 | 72.308 | 130 | 27 | 3 | 9 | 137 | 13 | 134 | 3.14e-59 | 182 |
| MS.gene09802.t1 | MTR_2g026710 | 71.311 | 122 | 26 | 1 | 1 | 122 | 1 | 113 | 3.49e-59 | 182 |
| MS.gene09802.t1 | MTR_5g095740 | 72.951 | 122 | 27 | 2 | 10 | 129 | 9 | 126 | 5.54e-58 | 179 |
| MS.gene09802.t1 | MTR_8g091720 | 78.095 | 105 | 23 | 0 | 11 | 115 | 13 | 117 | 1.46e-56 | 176 |
| MS.gene09802.t1 | MTR_8g093920 | 79.121 | 91 | 19 | 0 | 25 | 115 | 39 | 129 | 9.11e-53 | 167 |
| MS.gene09802.t1 | MTR_0392s0020 | 55.372 | 121 | 49 | 1 | 24 | 144 | 16 | 131 | 1.39e-48 | 154 |
| MS.gene09802.t1 | MTR_4g133938 | 70.588 | 102 | 30 | 0 | 14 | 115 | 7 | 108 | 1.46e-48 | 154 |
| MS.gene09802.t1 | MTR_1g088860 | 69.792 | 96 | 29 | 0 | 24 | 119 | 34 | 129 | 2.25e-48 | 155 |
| MS.gene09802.t1 | MTR_4g119500 | 62.617 | 107 | 38 | 1 | 9 | 115 | 7 | 111 | 3.96e-47 | 150 |
| MS.gene09802.t1 | MTR_4g133952 | 50.704 | 142 | 68 | 1 | 24 | 163 | 56 | 197 | 8.79e-47 | 152 |
| MS.gene09802.t1 | MTR_1g039040 | 64.894 | 94 | 33 | 0 | 24 | 117 | 4 | 97 | 1.56e-45 | 148 |
| MS.gene09802.t1 | MTR_1g083070 | 46.667 | 120 | 62 | 1 | 26 | 143 | 4 | 123 | 5.11e-37 | 124 |
| MS.gene09802.t1 | MTR_1g029070 | 48.454 | 97 | 50 | 0 | 25 | 121 | 51 | 147 | 1.34e-29 | 107 |
| MS.gene09802.t1 | MTR_5g095900 | 42.308 | 104 | 59 | 1 | 14 | 116 | 3 | 106 | 1.16e-21 | 86.7 |
| MS.gene09802.t1 | MTR_1g028480 | 44.565 | 92 | 38 | 1 | 56 | 134 | 19 | 110 | 1.07e-19 | 79.7 |
| MS.gene09802.t1 | MTR_1g029100 | 40.789 | 76 | 45 | 0 | 31 | 106 | 7 | 82 | 2.09e-18 | 75.9 |
| MS.gene09802.t1 | MTR_2g056000 | 32.110 | 109 | 74 | 0 | 27 | 135 | 42 | 150 | 2.95e-18 | 78.2 |
| MS.gene09802.t1 | MTR_4g112380 | 32.039 | 103 | 70 | 0 | 27 | 129 | 12 | 114 | 5.50e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09802.t1 | AT2G37060 | 74.850 | 167 | 27 | 7 | 1 | 158 | 1 | 161 | 5.62e-79 | 232 |
| MS.gene09802.t1 | AT2G37060 | 74.850 | 167 | 27 | 7 | 1 | 158 | 1 | 161 | 5.62e-79 | 232 |
| MS.gene09802.t1 | AT2G37060 | 74.850 | 167 | 27 | 7 | 1 | 158 | 1 | 161 | 5.62e-79 | 232 |
| MS.gene09802.t1 | AT3G53340 | 77.551 | 147 | 26 | 4 | 17 | 157 | 19 | 164 | 5.76e-76 | 224 |
| MS.gene09802.t1 | AT3G53340 | 77.551 | 147 | 26 | 4 | 17 | 157 | 19 | 164 | 5.76e-76 | 224 |
| MS.gene09802.t1 | AT2G38880 | 76.923 | 130 | 25 | 1 | 1 | 130 | 1 | 125 | 9.66e-71 | 210 |
| MS.gene09802.t1 | AT2G38880 | 75.758 | 132 | 25 | 2 | 1 | 130 | 1 | 127 | 7.73e-69 | 205 |
| MS.gene09802.t1 | AT2G38880 | 75.758 | 132 | 25 | 2 | 1 | 130 | 1 | 127 | 1.03e-68 | 205 |
| MS.gene09802.t1 | AT2G38880 | 75.758 | 132 | 25 | 2 | 1 | 130 | 1 | 127 | 1.03e-68 | 205 |
| MS.gene09802.t1 | AT2G38880 | 75.758 | 132 | 25 | 2 | 1 | 130 | 1 | 127 | 1.03e-68 | 205 |
| MS.gene09802.t1 | AT3G53340 | 85.849 | 106 | 14 | 1 | 17 | 121 | 19 | 124 | 2.57e-65 | 197 |
| MS.gene09802.t1 | AT3G53340 | 85.849 | 106 | 14 | 1 | 17 | 121 | 19 | 124 | 2.57e-65 | 197 |
| MS.gene09802.t1 | AT2G38880 | 64.516 | 155 | 25 | 2 | 1 | 130 | 1 | 150 | 9.51e-65 | 196 |
| MS.gene09802.t1 | AT2G38880 | 64.516 | 155 | 25 | 2 | 1 | 130 | 1 | 150 | 9.51e-65 | 196 |
| MS.gene09802.t1 | AT2G38880 | 79.130 | 115 | 19 | 1 | 1 | 115 | 1 | 110 | 1.48e-64 | 193 |
| MS.gene09802.t1 | AT2G38880 | 79.130 | 115 | 19 | 1 | 1 | 115 | 1 | 110 | 4.33e-64 | 194 |
| MS.gene09802.t1 | AT2G38880 | 79.130 | 115 | 19 | 1 | 1 | 115 | 1 | 110 | 4.33e-64 | 194 |
| MS.gene09802.t1 | AT2G38880 | 79.130 | 115 | 19 | 1 | 1 | 115 | 1 | 110 | 4.33e-64 | 194 |
| MS.gene09802.t1 | AT3G53340 | 89.000 | 100 | 10 | 1 | 17 | 115 | 19 | 118 | 5.46e-64 | 192 |
| MS.gene09802.t1 | AT4G14540 | 80.952 | 105 | 18 | 1 | 13 | 115 | 6 | 110 | 1.62e-59 | 182 |
| MS.gene09802.t1 | AT5G47640 | 85.714 | 91 | 13 | 0 | 25 | 115 | 26 | 116 | 1.62e-56 | 176 |
| MS.gene09802.t1 | AT2G13570 | 79.167 | 96 | 18 | 1 | 25 | 120 | 35 | 128 | 3.33e-54 | 171 |
| MS.gene09802.t1 | AT2G47810 | 65.741 | 108 | 34 | 2 | 24 | 128 | 49 | 156 | 2.55e-47 | 151 |
| MS.gene09802.t1 | AT5G47670 | 61.682 | 107 | 39 | 1 | 24 | 128 | 27 | 133 | 1.49e-46 | 151 |
| MS.gene09802.t1 | AT5G47670 | 61.682 | 107 | 39 | 1 | 24 | 128 | 56 | 162 | 3.71e-46 | 151 |
| MS.gene09802.t1 | AT5G47670 | 61.682 | 107 | 39 | 1 | 24 | 128 | 56 | 162 | 3.71e-46 | 151 |
| MS.gene09802.t1 | AT1G21970 | 51.538 | 130 | 59 | 2 | 1 | 126 | 31 | 160 | 2.73e-45 | 149 |
| MS.gene09802.t1 | AT1G09030 | 50.000 | 134 | 56 | 3 | 26 | 148 | 3 | 136 | 5.89e-43 | 140 |
| MS.gene09802.t1 | AT5G23090 | 35.644 | 101 | 59 | 2 | 27 | 123 | 12 | 110 | 1.88e-17 | 75.1 |
| MS.gene09802.t1 | AT5G08190 | 34.653 | 101 | 60 | 2 | 27 | 123 | 12 | 110 | 7.09e-17 | 73.9 |
| MS.gene09802.t1 | AT5G08190 | 37.500 | 80 | 50 | 0 | 27 | 106 | 12 | 91 | 9.65e-17 | 73.6 |
| MS.gene09802.t1 | AT5G23090 | 38.462 | 78 | 48 | 0 | 27 | 104 | 12 | 89 | 1.64e-16 | 72.8 |
| MS.gene09802.t1 | AT5G23090 | 38.462 | 78 | 48 | 0 | 27 | 104 | 12 | 89 | 1.64e-16 | 72.8 |
| MS.gene09802.t1 | AT5G23090 | 38.462 | 78 | 48 | 0 | 27 | 104 | 12 | 89 | 1.64e-16 | 72.8 |
| MS.gene09802.t1 | AT5G23090 | 38.710 | 62 | 38 | 0 | 43 | 104 | 15 | 76 | 6.84e-12 | 60.5 |
Find 45 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGGGCGATGGCTACTTT+AGG | 0.202896 | 7.3:-12233818 | MS.gene09802:CDS |
| AACGGTTTCCTTAGCATCTT+TGG | 0.251977 | 7.3:+12234017 | None:intergenic |
| TTTGGGCGATGGCTACTTTA+GGG | 0.280322 | 7.3:-12233817 | MS.gene09802:CDS |
| CTTTCGTGGCTGCCGCCGCC+AGG | 0.317211 | 7.3:+12234147 | None:intergenic |
| GCCAGGACTCGCCGGAGTTT+CGG | 0.338910 | 7.3:+12234164 | None:intergenic |
| TAACGGTGATGATTTGCTTT+GGG | 0.394165 | 7.3:-12233834 | MS.gene09802:CDS |
| GCCAGATGTGTCTCCACCCT+TGG | 0.406781 | 7.3:+12233196 | None:intergenic |
| TCCGAAACTCCGGCGAGTCC+TGG | 0.416968 | 7.3:-12234165 | MS.gene09802:CDS |
| TTAACGGTGATGATTTGCTT+TGG | 0.430649 | 7.3:-12233835 | MS.gene09802:CDS |
| GGTGTTTCAGGGTGATACTA+AGG | 0.432945 | 7.3:-12233225 | MS.gene09802:intron |
| AGATGCTAAGGAAACCGTTC+AGG | 0.443640 | 7.3:-12234013 | MS.gene09802:CDS |
| GAGAAGAGGAAGACGATTAA+CGG | 0.446276 | 7.3:-12233851 | MS.gene09802:CDS |
| GACTGTGTTCGCCGCTTTCG+TGG | 0.449949 | 7.3:+12234133 | None:intergenic |
| GATGGCTACTTTAGGGTTTG+AGG | 0.453692 | 7.3:-12233810 | MS.gene09802:CDS |
| GCCAAGGGTGGAGACACATC+TGG | 0.461100 | 7.3:-12233197 | MS.gene09802:CDS |
| ACGGTCTTGTTCACGGATGT+TGG | 0.478749 | 7.3:+12234104 | None:intergenic |
| TAACCTCTCTGTATCTTGTA+AGG | 0.479347 | 7.3:+12233762 | None:intergenic |
| TGATGATTTGCTTTGGGCGA+TGG | 0.479911 | 7.3:-12233828 | MS.gene09802:CDS |
| CATCAAGGTTCTTTCTCACA+AGG | 0.487515 | 7.3:-12233019 | MS.gene09802:CDS |
| CTGCCGCCGCCAGGACTCGC+CGG | 0.499622 | 7.3:+12234156 | None:intergenic |
| TGTTTCCTACACAAATTCTC+AGG | 0.502672 | 7.3:-12232996 | MS.gene09802:CDS |
| AAATTGCAGCTTGTTCATCA+AGG | 0.514442 | 7.3:-12233034 | MS.gene09802:intron |
| TGATACTAAGGGCTCTGCCA+AGG | 0.527179 | 7.3:-12233213 | MS.gene09802:CDS |
| CACTACTCTCTAAAATGCTA+AGG | 0.528875 | 7.3:-12232970 | MS.gene09802:CDS |
| TCAACAAGGTTCTAATCCTC+AGG | 0.530968 | 7.3:-12233162 | MS.gene09802:intron |
| GAAGGAAACGGTCTTGTTCA+CGG | 0.533282 | 7.3:+12234097 | None:intergenic |
| GGCGGCGGCAGCCACGAAAG+CGG | 0.544156 | 7.3:-12234144 | MS.gene09802:CDS |
| GATACTAAGGGCTCTGCCAA+GGG | 0.547138 | 7.3:-12233212 | MS.gene09802:CDS |
| CGACGATATGTCCGAAACTC+CGG | 0.548200 | 7.3:-12234175 | None:intergenic |
| CTTGTAAGGTAAATCTTAAG+AGG | 0.551310 | 7.3:+12233776 | None:intergenic |
| GTGTTTCAGGGTGATACTAA+GGG | 0.557727 | 7.3:-12233224 | MS.gene09802:intron |
| ACTCCGGCGAGTCCTGGCGG+CGG | 0.562769 | 7.3:-12234159 | MS.gene09802:CDS |
| TGTTAGCGATAGGAAGGAAA+CGG | 0.567517 | 7.3:+12234085 | None:intergenic |
| TAAAATCGCCAAAGATGCTA+AGG | 0.569776 | 7.3:-12234025 | MS.gene09802:CDS |
| ATAAGTGTCAGAGAGAGAAG+AGG | 0.595900 | 7.3:-12233865 | MS.gene09802:CDS |
| GGTGATGAAGCTGATGAACT+CGG | 0.601461 | 7.3:+12233981 | None:intergenic |
| GGCTGATGTTAGCGATAGGA+AGG | 0.601546 | 7.3:+12234079 | None:intergenic |
| CTCTCTCTGACACTTATCAG+AGG | 0.607674 | 7.3:+12233871 | None:intergenic |
| CTCGGAGACACATTCCTGAA+CGG | 0.614495 | 7.3:+12233999 | None:intergenic |
| ACTAAGGGCTCTGCCAAGGG+TGG | 0.614551 | 7.3:-12233209 | MS.gene09802:CDS |
| ATGCGGCTGATGTTAGCGAT+AGG | 0.621968 | 7.3:+12234075 | None:intergenic |
| GAAACTCCGGCGAGTCCTGG+CGG | 0.650343 | 7.3:-12234162 | MS.gene09802:CDS |
| TGTTACCTGAGAATTTGTGT+AGG | 0.662155 | 7.3:+12232991 | None:intergenic |
| TGTTCACGGATGTTGGAACG+AGG | 0.689840 | 7.3:+12234111 | None:intergenic |
| TTACCTTACAAGATACAGAG+AGG | 0.715766 | 7.3:-12233765 | MS.gene09802:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGATGTTTAATTGTTTA+GGG | - | chr7.3:12233232-12233251 | MS.gene09802:intron | 15.0% |
| !! | AAAGTAAGAAAAAGAAAGTA+AGG | + | chr7.3:12233194-12233213 | None:intergenic | 20.0% |
| !! | AGTGAAAATTAATGTCAATT+GGG | - | chr7.3:12233455-12233474 | MS.gene09802:intron | 20.0% |
| !! | GATTTGATGTTTAATTGTTT+AGG | - | chr7.3:12233231-12233250 | MS.gene09802:intron | 20.0% |
| !!! | AATTGACATTAATTTTCACT+GGG | + | chr7.3:12233455-12233474 | None:intergenic | 20.0% |
| !!! | TACTTTTCTAATTGTTTCTA+GGG | + | chr7.3:12234046-12234065 | None:intergenic | 20.0% |
| !!! | TTTTACTTTATAAGCTTTTC+TGG | - | chr7.3:12233426-12233445 | MS.gene09802:intron | 20.0% |
| ! | CAGTGAAAATTAATGTCAAT+TGG | - | chr7.3:12233454-12233473 | MS.gene09802:intron | 25.0% |
| !! | ATTGACATTAATTTTCACTG+GGG | + | chr7.3:12233454-12233473 | None:intergenic | 25.0% |
| !! | CAATTGACATTAATTTTCAC+TGG | + | chr7.3:12233456-12233475 | None:intergenic | 25.0% |
| !! | GTTTTACACTTTCAATGTTT+TGG | - | chr7.3:12233829-12233848 | MS.gene09802:CDS | 25.0% |
| !!! | AATAGGTTTCTGTGATTTTT+TGG | - | chr7.3:12233852-12233871 | MS.gene09802:CDS | 25.0% |
| !!! | ACGAATCTATGTTTTATTTG+TGG | - | chr7.3:12233880-12233899 | MS.gene09802:intron | 25.0% |
| !!! | ACTTTTCTAATTGTTTCTAG+GGG | + | chr7.3:12234045-12234064 | None:intergenic | 25.0% |
| !!! | CTACTTTTCTAATTGTTTCT+AGG | + | chr7.3:12234047-12234066 | None:intergenic | 25.0% |
| !!! | CTATTGTACTTTTTAACTGA+TGG | - | chr7.3:12233537-12233556 | MS.gene09802:intron | 25.0% |
| !!! | TTTTTTCATTGCTTTGTCAT+GGG | - | chr7.3:12233565-12233584 | MS.gene09802:intron | 25.0% |
| !!! | TTTTTTTCATTGCTTTGTCA+TGG | - | chr7.3:12233564-12233583 | MS.gene09802:intron | 25.0% |
| AAGTTCAAGCAATGAAAGAA+AGG | + | chr7.3:12233628-12233647 | None:intergenic | 30.0% | |
| CTTGTAAGGTAAATCTTAAG+AGG | + | chr7.3:12233353-12233372 | None:intergenic | 30.0% | |
| GATATTTGTGGAGATACTTT+AGG | + | chr7.3:12233772-12233791 | None:intergenic | 30.0% | |
| TATCTCCACAAATATCAATG+TGG | - | chr7.3:12233776-12233795 | MS.gene09802:CDS | 30.0% | |
| ! | ATTATGCGTGATTTTATAGC+CGG | - | chr7.3:12234011-12234030 | MS.gene09802:CDS | 30.0% |
| ! | TTGACATTAATTTTCACTGG+GGG | + | chr7.3:12233453-12233472 | None:intergenic | 30.0% |
| !!! | CACTTTCAATGTTTTGGAAT+AGG | - | chr7.3:12233835-12233854 | MS.gene09802:CDS | 30.0% |
| !!! | GATTAGTTTTTTTGCACTGA+TGG | - | chr7.3:12233681-12233700 | MS.gene09802:intron | 30.0% |
| !!! | GTTTTATTTGTGGTGTTTCA+GGG | - | chr7.3:12233890-12233909 | MS.gene09802:intron | 30.0% |
| !!! | TGTTTTATTTGTGGTGTTTC+AGG | - | chr7.3:12233889-12233908 | MS.gene09802:intron | 30.0% |
| AAAAAAGCTCTTCCTGCTAA+TGG | - | chr7.3:12233078-12233097 | MS.gene09802:intron | 35.0% | |
| AATTCCGTATAGATTGTCAG+AGG | + | chr7.3:12233482-12233501 | None:intergenic | 35.0% | |
| ATGTATGTGTTTACTACCTG+AGG | + | chr7.3:12233983-12234002 | None:intergenic | 35.0% | |
| CAATGTGGTGTGATTTGATT+GGG | - | chr7.3:12233791-12233810 | MS.gene09802:CDS | 35.0% | |
| CTTCACTGTACCATGTTTAT+AGG | - | chr7.3:12233740-12233759 | MS.gene09802:intron | 35.0% | |
| GGCAAAAAAGATGTTCAACA+AGG | - | chr7.3:12233950-12233969 | MS.gene09802:intron | 35.0% | |
| TAAAATCGCCAAAGATGCTA+AGG | - | chr7.3:12233101-12233120 | MS.gene09802:intron | 35.0% | |
| TAACCTCTCTGTATCTTGTA+AGG | + | chr7.3:12233367-12233386 | None:intergenic | 35.0% | |
| TCAATGTGGTGTGATTTGAT+TGG | - | chr7.3:12233790-12233809 | MS.gene09802:CDS | 35.0% | |
| TCACACCACATTGATATTTG+TGG | + | chr7.3:12233784-12233803 | None:intergenic | 35.0% | |
| TGTTACCTGAGAATTTGTGT+AGG | + | chr7.3:12234138-12234157 | None:intergenic | 35.0% | |
| TGTTTCCTACACAAATTCTC+AGG | - | chr7.3:12234130-12234149 | MS.gene09802:CDS | 35.0% | |
| TTACAAGATACAGAGAGGTT+AGG | - | chr7.3:12233366-12233385 | MS.gene09802:intron | 35.0% | |
| TTACCTTACAAGATACAGAG+AGG | - | chr7.3:12233361-12233380 | MS.gene09802:intron | 35.0% | |
| ! | AAATTGCAGCTTGTTCATCA+AGG | - | chr7.3:12234092-12234111 | MS.gene09802:CDS | 35.0% |
| ! | TAGGAACTAGCCTATAAACA+TGG | + | chr7.3:12233753-12233772 | None:intergenic | 35.0% |
| !! | CACTACTCTCTAAAATGCTA+AGG | - | chr7.3:12234156-12234175 | MS.gene09802:CDS | 35.0% |
| !! | TAACGGTGATGATTTGCTTT+GGG | - | chr7.3:12233292-12233311 | MS.gene09802:intron | 35.0% |
| !! | TTAACGGTGATGATTTGCTT+TGG | - | chr7.3:12233291-12233310 | MS.gene09802:intron | 35.0% |
| !!! | GAAGAGCTTTTTTCATGATG+CGG | + | chr7.3:12233071-12233090 | None:intergenic | 35.0% |
| AACGGTTTCCTTAGCATCTT+TGG | + | chr7.3:12233112-12233131 | None:intergenic | 40.0% | |
| ATAAGTGTCAGAGAGAGAAG+AGG | - | chr7.3:12233261-12233280 | MS.gene09802:intron | 40.0% | |
| ATTGGAAATGTTGCAGATGG+AGG | - | chr7.3:12233591-12233610 | MS.gene09802:intron | 40.0% | |
| CATCAAGGTTCTTTCTCACA+AGG | - | chr7.3:12234107-12234126 | MS.gene09802:CDS | 40.0% | |
| GAGAAGAGGAAGACGATTAA+CGG | - | chr7.3:12233275-12233294 | MS.gene09802:intron | 40.0% | |
| GATTTGAAAATCGTACTCGC+TGG | + | chr7.3:12233169-12233188 | None:intergenic | 40.0% | |
| GTGTTTCAGGGTGATACTAA+GGG | - | chr7.3:12233902-12233921 | MS.gene09802:intron | 40.0% | |
| TCGATTGGAAATGTTGCAGA+TGG | - | chr7.3:12233588-12233607 | MS.gene09802:intron | 40.0% | |
| TGTTAGCGATAGGAAGGAAA+CGG | + | chr7.3:12233044-12233063 | None:intergenic | 40.0% | |
| ! | TCAACAAGGTTCTAATCCTC+AGG | - | chr7.3:12233964-12233983 | MS.gene09802:intron | 40.0% |
| ! | TTGGCGATTTTACCATTAGC+AGG | + | chr7.3:12233093-12233112 | None:intergenic | 40.0% |
| AGATGCTAAGGAAACCGTTC+AGG | - | chr7.3:12233113-12233132 | MS.gene09802:intron | 45.0% | |
| CTCTCTCTGACACTTATCAG+AGG | + | chr7.3:12233258-12233277 | None:intergenic | 45.0% | |
| GGGTCCTCTGACAATCTATA+CGG | - | chr7.3:12233475-12233494 | MS.gene09802:intron | 45.0% | |
| GGTGATGAAGCTGATGAACT+CGG | + | chr7.3:12233148-12233167 | None:intergenic | 45.0% | |
| GGTGTTTCAGGGTGATACTA+AGG | - | chr7.3:12233901-12233920 | MS.gene09802:intron | 45.0% | |
| TTGCTTTGTCATGGGTCGAT+TGG | - | chr7.3:12233573-12233592 | MS.gene09802:intron | 45.0% | |
| ! | TTTGGGCGATGGCTACTTTA+GGG | - | chr7.3:12233309-12233328 | MS.gene09802:intron | 45.0% |
| !! | GAAGGAAACGGTCTTGTTCA+CGG | + | chr7.3:12233032-12233051 | None:intergenic | 45.0% |
| !! | GATGGCTACTTTAGGGTTTG+AGG | - | chr7.3:12233316-12233335 | MS.gene09802:intron | 45.0% |
| !! | TGATGATTTGCTTTGGGCGA+TGG | - | chr7.3:12233298-12233317 | MS.gene09802:intron | 45.0% |
| ATGCGGCTGATGTTAGCGAT+AGG | + | chr7.3:12233054-12233073 | None:intergenic | 50.0% | |
| CTCGGAGACACATTCCTGAA+CGG | + | chr7.3:12233130-12233149 | None:intergenic | 50.0% | |
| GATACTAAGGGCTCTGCCAA+GGG | - | chr7.3:12233914-12233933 | MS.gene09802:intron | 50.0% | |
| GGCTGATGTTAGCGATAGGA+AGG | + | chr7.3:12233050-12233069 | None:intergenic | 50.0% | |
| TGATACTAAGGGCTCTGCCA+AGG | - | chr7.3:12233913-12233932 | MS.gene09802:intron | 50.0% | |
| TGTTCACGGATGTTGGAACG+AGG | + | chr7.3:12233018-12233037 | None:intergenic | 50.0% | |
| ! | CTTTGGGCGATGGCTACTTT+AGG | - | chr7.3:12233308-12233327 | MS.gene09802:intron | 50.0% |
| ! | GTTTCTAGGGGTGTGTTCTC+CGG | + | chr7.3:12234033-12234052 | None:intergenic | 50.0% |
| !! | ACGGTCTTGTTCACGGATGT+TGG | + | chr7.3:12233025-12233044 | None:intergenic | 50.0% |
| ACTAAGGGCTCTGCCAAGGG+TGG | - | chr7.3:12233917-12233936 | MS.gene09802:intron | 60.0% | |
| GCCAAGGGTGGAGACACATC+TGG | - | chr7.3:12233929-12233948 | MS.gene09802:intron | 60.0% | |
| GCCAGATGTGTCTCCACCCT+TGG | + | chr7.3:12233933-12233952 | None:intergenic | 60.0% | |
| ! | GACTGTGTTCGCCGCTTTCG+TGG | + | chr7.3:12232996-12233015 | None:intergenic | 60.0% |
| GAAACTCCGGCGAGTCCTGG+CGG | - | chr7.3:12232964-12232983 | MS.gene09802:CDS | 65.0% | |
| GCCAGGACTCGCCGGAGTTT+CGG | + | chr7.3:12232965-12232984 | None:intergenic | 65.0% | |
| TCCGAAACTCCGGCGAGTCC+TGG | - | chr7.3:12232961-12232980 | MS.gene09802:CDS | 65.0% | |
| ACTCCGGCGAGTCCTGGCGG+CGG | - | chr7.3:12232967-12232986 | MS.gene09802:CDS | 75.0% | |
| CTTTCGTGGCTGCCGCCGCC+AGG | + | chr7.3:12232982-12233001 | None:intergenic | 75.0% | |
| GGCGGCGGCAGCCACGAAAG+CGG | - | chr7.3:12232982-12233001 | MS.gene09802:CDS | 75.0% | |
| ! | CTGCCGCCGCCAGGACTCGC+CGG | + | chr7.3:12232973-12232992 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 12232958 | 12234190 | 12232958 | ID=MS.gene09802 |
| chr7.3 | mRNA | 12232958 | 12234190 | 12232958 | ID=MS.gene09802.t1;Parent=MS.gene09802 |
| chr7.3 | exon | 12233976 | 12234190 | 12233976 | ID=MS.gene09802.t1.exon1;Parent=MS.gene09802.t1 |
| chr7.3 | CDS | 12233976 | 12234190 | 12233976 | ID=cds.MS.gene09802.t1;Parent=MS.gene09802.t1 |
| chr7.3 | exon | 12233766 | 12233895 | 12233766 | ID=MS.gene09802.t1.exon2;Parent=MS.gene09802.t1 |
| chr7.3 | CDS | 12233766 | 12233895 | 12233766 | ID=cds.MS.gene09802.t1;Parent=MS.gene09802.t1 |
| chr7.3 | exon | 12233163 | 12233237 | 12233163 | ID=MS.gene09802.t1.exon3;Parent=MS.gene09802.t1 |
| chr7.3 | CDS | 12233163 | 12233237 | 12233163 | ID=cds.MS.gene09802.t1;Parent=MS.gene09802.t1 |
| chr7.3 | exon | 12232958 | 12233047 | 12232958 | ID=MS.gene09802.t1.exon4;Parent=MS.gene09802.t1 |
| chr7.3 | CDS | 12232958 | 12233047 | 12232958 | ID=cds.MS.gene09802.t1;Parent=MS.gene09802.t1 |
| Gene Sequence |
| Protein sequence |
