Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20209.t1 | XP_013447243.1 | 99.5 | 588 | 3 | 0 | 1 | 588 | 1 | 588 | 1.20E-304 | 1055 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20209.t1 | O81629 | 73.3 | 536 | 131 | 3 | 63 | 587 | 74 | 608 | 2.4e-216 | 753.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20209.t1 | A0A072U605 | 99.5 | 588 | 3 | 0 | 1 | 588 | 1 | 588 | 8.9e-305 | 1055.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20209 | MS.gene061041 | PPI |
| MS.gene20209 | MS.gene033840 | PPI |
| MS.gene20209 | MS.gene22354 | PPI |
| MS.gene20209 | MS.gene069541 | PPI |
| MS.gene20209 | MS.gene040852 | PPI |
| MS.gene20209 | MS.gene93780 | PPI |
| MS.gene20209 | MS.gene040149 | PPI |
| MS.gene62618 | MS.gene20209 | PPI |
| MS.gene75846 | MS.gene20209 | PPI |
| MS.gene20209 | MS.gene95892 | PPI |
| MS.gene20209 | MS.gene007355 | PPI |
| MS.gene20209 | MS.gene007592 | PPI |
| MS.gene20209 | MS.gene80320 | PPI |
| MS.gene20209 | MS.gene061659 | PPI |
| MS.gene20209 | MS.gene020596 | PPI |
| MS.gene20209 | MS.gene026418 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20209.t1 | MTR_8g099745 | 99.490 | 588 | 3 | 0 | 1 | 588 | 1 | 588 | 0.0 | 1203 |
| MS.gene20209.t1 | MTR_8g027385 | 69.691 | 551 | 156 | 3 | 37 | 587 | 32 | 571 | 0.0 | 775 |
| MS.gene20209.t1 | MTR_6g007110 | 66.535 | 508 | 169 | 1 | 68 | 574 | 186 | 693 | 0.0 | 701 |
| MS.gene20209.t1 | MTR_3g077950 | 58.761 | 565 | 222 | 3 | 13 | 567 | 191 | 754 | 0.0 | 695 |
| MS.gene20209.t1 | MTR_3g077950 | 58.761 | 565 | 222 | 3 | 13 | 567 | 219 | 782 | 0.0 | 694 |
| MS.gene20209.t1 | MTR_4g106900 | 58.421 | 570 | 213 | 3 | 23 | 569 | 102 | 670 | 0.0 | 687 |
| MS.gene20209.t1 | MTR_6g007110 | 65.991 | 444 | 151 | 0 | 68 | 511 | 186 | 629 | 0.0 | 616 |
| MS.gene20209.t1 | MTR_1g070145 | 28.119 | 537 | 349 | 8 | 38 | 551 | 52 | 574 | 2.06e-49 | 181 |
| MS.gene20209.t1 | MTR_2g023050 | 69.792 | 96 | 28 | 1 | 480 | 574 | 3 | 98 | 2.58e-35 | 130 |
| MS.gene20209.t1 | MTR_6g006830 | 63.793 | 58 | 19 | 1 | 294 | 351 | 12 | 67 | 2.92e-20 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20209.t1 | AT4G10840 | 76.230 | 610 | 119 | 9 | 1 | 588 | 4 | 609 | 0.0 | 927 |
| MS.gene20209.t1 | AT4G10840 | 76.504 | 532 | 100 | 8 | 1 | 511 | 4 | 531 | 0.0 | 810 |
| MS.gene20209.t1 | AT4G10840 | 23.047 | 256 | 190 | 5 | 280 | 531 | 175 | 427 | 8.08e-11 | 65.1 |
| MS.gene20209.t1 | AT3G27960 | 59.239 | 552 | 203 | 8 | 32 | 569 | 109 | 652 | 0.0 | 652 |
| MS.gene20209.t1 | AT3G27960 | 59.239 | 552 | 203 | 8 | 32 | 569 | 109 | 652 | 0.0 | 652 |
| MS.gene20209.t1 | AT1G27500 | 59.808 | 520 | 208 | 1 | 50 | 569 | 135 | 653 | 0.0 | 642 |
| MS.gene20209.t1 | AT1G27500 | 59.808 | 520 | 208 | 1 | 50 | 569 | 124 | 642 | 0.0 | 641 |
| MS.gene20209.t1 | AT3G27960 | 58.907 | 494 | 181 | 8 | 32 | 511 | 109 | 594 | 0.0 | 583 |
| MS.gene20209.t1 | AT2G31240 | 27.307 | 531 | 352 | 8 | 38 | 547 | 73 | 590 | 5.88e-43 | 163 |
Find 166 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGTCCTCTTTGAATT+TGG | 0.058206 | 4.4:-4485653 | None:intergenic |
| GAGTTGGTGGTAGGGGTTTC+GGG | 0.177970 | 4.4:-4483668 | None:intergenic |
| TGGTGATTGGGTTGGTGTTT+TGG | 0.178570 | 4.4:-4483588 | None:intergenic |
| AGAGTTGGTGGTAGGGGTTT+CGG | 0.229758 | 4.4:-4483669 | None:intergenic |
| GATCTTTGAGTAGGGGTTTC+GGG | 0.248817 | 4.4:-4483557 | None:intergenic |
| TCCTTGATCATACATTAAAA+TGG | 0.256575 | 4.4:-4484050 | None:intergenic |
| CGGTGAAACCTGTCGCTATT+TGG | 0.258596 | 4.4:+4484117 | MS.gene20209:CDS |
| AACAAGAGGTGGCCTGGTTT+GGG | 0.288968 | 4.4:+4485683 | MS.gene20209:CDS |
| GGCGCAGCGTTCGAAGGATT+TGG | 0.308908 | 4.4:-4483813 | None:intergenic |
| CGCTTCTCATCTTCAAAATC+AGG | 0.310556 | 4.4:-4485554 | None:intergenic |
| GGGTTTCGGGTAAGGAGATT+CGG | 0.314955 | 4.4:-4483544 | None:intergenic |
| GGATCTTTGAGTAGGGGTTT+CGG | 0.325506 | 4.4:-4483558 | None:intergenic |
| GCTCATGGCGAGGTCGAGAC+TGG | 0.332492 | 4.4:-4483849 | None:intergenic |
| TAACAAGAGGTGGCCTGGTT+TGG | 0.336300 | 4.4:+4485682 | MS.gene20209:CDS |
| ATTTACTCGAAGCCGGTTCC+TGG | 0.341173 | 4.4:+4484577 | MS.gene20209:CDS |
| GCATCTTGTTCTGGCGAGTA+TGG | 0.342306 | 4.4:+4484309 | MS.gene20209:CDS |
| GAGGAGAGAGTTGGTGGTAG+GGG | 0.351758 | 4.4:-4483675 | None:intergenic |
| AGACAGAAAAGCAAAGTCTT+TGG | 0.357269 | 4.4:+4485616 | MS.gene20209:CDS |
| GGTTTCGGGTAAGGAGATTC+GGG | 0.358212 | 4.4:-4483543 | None:intergenic |
| GGCGTTGGAGCATCTTGTTC+TGG | 0.366170 | 4.4:+4484300 | MS.gene20209:CDS |
| ATCTCCTCTGCAGTAGTTCC+AGG | 0.370113 | 4.4:-4484595 | None:intergenic |
| AGAAGGAATGGACCTAGATC+TGG | 0.371588 | 4.4:-4483719 | None:intergenic |
| TTCGAACGCTGCGCCGTTGA+AGG | 0.384353 | 4.4:+4483821 | MS.gene20209:CDS |
| ATTCGGGGCGGAGGTCCACC+TGG | 0.386549 | 4.4:-4483527 | None:intergenic |
| GACACTATCGCTTCCGGCGA+TGG | 0.393002 | 4.4:+4483755 | MS.gene20209:CDS |
| CATGCTCTTGCTGCTTTCTC+CGG | 0.394844 | 4.4:+4483977 | MS.gene20209:CDS |
| AGAGGAGAGAGTTGGTGGTA+GGG | 0.398347 | 4.4:-4483676 | None:intergenic |
| TTTGGCGGAGGCGAATGTTC+AGG | 0.402067 | 4.4:+4484135 | MS.gene20209:CDS |
| TTTGTTAGGGAGTGGTGATT+GGG | 0.416865 | 4.4:-4483600 | None:intergenic |
| TGGATCGCGCGTTCGAGAAC+AGG | 0.420650 | 4.4:-4483926 | None:intergenic |
| GCAGAAGGCAATGAAATTGT+TGG | 0.422889 | 4.4:+4484690 | MS.gene20209:CDS |
| GTTTAGCTGATTTGTATCAT+AGG | 0.424643 | 4.4:+4484506 | MS.gene20209:CDS |
| TCATTTCAATTCACCATGCC+TGG | 0.424930 | 4.4:+4483494 | None:intergenic |
| CGTGAAGAAGGGGAGGGAGA+AGG | 0.426364 | 4.4:-4483629 | None:intergenic |
| TGCTTTGGCGGGCCCATCGC+CGG | 0.428901 | 4.4:-4483768 | None:intergenic |
| AGCTGCAGATCGGAGACTTA+TGG | 0.429629 | 4.4:+4484243 | MS.gene20209:CDS |
| CTGAATTGTTTGAGGAAGCT+AGG | 0.429677 | 4.4:+4484929 | MS.gene20209:CDS |
| GAGAGGAGAGAGTTGGTGGT+AGG | 0.429945 | 4.4:-4483677 | None:intergenic |
| TAGAATATGTGCTGAAATTG+AGG | 0.430332 | 4.4:+4485507 | MS.gene20209:CDS |
| TTGAGTAGGGGTTTCGGGTA+AGG | 0.430843 | 4.4:-4483552 | None:intergenic |
| TTAGGGAGTGGTGATTGGGT+TGG | 0.441933 | 4.4:-4483596 | None:intergenic |
| GGCATAGTCGAGTGCTTTGG+CGG | 0.446056 | 4.4:-4483780 | None:intergenic |
| AAAAGCTTCAACGCCTCCTC+TGG | 0.447073 | 4.4:-4484667 | None:intergenic |
| GGAGTGATGTATTATATGAT+TGG | 0.448077 | 4.4:+4484763 | MS.gene20209:CDS |
| TGGGTTATCGAGAGAGGCTT+CGG | 0.448263 | 4.4:-4483699 | None:intergenic |
| AAATCATCCTTCTGTTGCTT+CGG | 0.448548 | 4.4:+4484474 | MS.gene20209:CDS |
| TTCTTATCAGAAAGCGCTTA+CGG | 0.456405 | 4.4:+4484429 | MS.gene20209:CDS |
| CAGGAACAGCTTCTTCGAAT+CGG | 0.458327 | 4.4:-4483907 | None:intergenic |
| AGTAAATCGCGGCGAGGACA+TGG | 0.460428 | 4.4:-4483874 | None:intergenic |
| GCCCGCGACACTATCGCTTC+CGG | 0.461619 | 4.4:+4483749 | MS.gene20209:CDS |
| GTCACCTAACTGCATATAAC+CGG | 0.462709 | 4.4:-4483996 | None:intergenic |
| GATCGGTATCACCTAACGTT+TGG | 0.464180 | 4.4:-4484087 | None:intergenic |
| GGACAGCAGAGTACAGTTGC+GGG | 0.464453 | 4.4:+4484724 | MS.gene20209:CDS |
| AGGATTCGGATCTTTGAGTA+GGG | 0.466088 | 4.4:-4483565 | None:intergenic |
| TTCAAATATCGCTGAAACCT+CGG | 0.468954 | 4.4:-4484632 | None:intergenic |
| GCTGATTTGTATCATAGGAC+AGG | 0.468960 | 4.4:+4484511 | MS.gene20209:CDS |
| TTCTCCGGTTATATGCAGTT+AGG | 0.469245 | 4.4:+4483992 | MS.gene20209:CDS |
| TGCAGATTTCCTTTCCCCAC+TGG | 0.470744 | 4.4:-4484839 | None:intergenic |
| GAGGATTCGGATCTTTGAGT+AGG | 0.478050 | 4.4:-4483566 | None:intergenic |
| ATTTCCAATACTCACATCAA+TGG | 0.480593 | 4.4:-4484368 | None:intergenic |
| TCTCTCGATAACCCAGATCT+AGG | 0.484396 | 4.4:+4483707 | MS.gene20209:CDS |
| TGAAGCTGCTGAATTGTTTG+AGG | 0.486297 | 4.4:+4484921 | MS.gene20209:CDS |
| CGCCTCCGCCAAATAGCGAC+AGG | 0.487480 | 4.4:-4484125 | None:intergenic |
| GCAGCTTCTTCAAGAGAAGC+AGG | 0.490367 | 4.4:-4484226 | None:intergenic |
| GGTAAGGAGATTCGGGGCGG+AGG | 0.490779 | 4.4:-4483536 | None:intergenic |
| GATGGCATAGTCGAGTGCTT+TGG | 0.491407 | 4.4:-4483783 | None:intergenic |
| CAAATTCAGATCCAAACGTT+AGG | 0.491969 | 4.4:+4484076 | MS.gene20209:CDS |
| AACTTCATTATCTTGACCGT+TGG | 0.494243 | 4.4:-4484341 | None:intergenic |
| GCAACTGTACTCTGCTGTCC+AGG | 0.494600 | 4.4:-4484721 | None:intergenic |
| ACACTATCGCTTCCGGCGAT+GGG | 0.496301 | 4.4:+4483756 | MS.gene20209:CDS |
| GCTGAGTTGCTGAAAGAAGC+TGG | 0.496317 | 4.4:+4485584 | MS.gene20209:CDS |
| GCTTCCATTGATGTGAGTAT+TGG | 0.498324 | 4.4:+4484364 | MS.gene20209:CDS |
| TCGGCACCACGCTCAACATC+AGG | 0.500199 | 4.4:-4483953 | None:intergenic |
| GAAGAAGGGGAGGGAGAAGG+TGG | 0.510154 | 4.4:-4483626 | None:intergenic |
| GAGAGTAACAAGAGGTGGCC+TGG | 0.512764 | 4.4:+4485677 | MS.gene20209:CDS |
| TGCAGCTACTTACGATGCAA+TGG | 0.513646 | 4.4:+4485014 | MS.gene20209:CDS |
| AAAATATAGCTTCATCAAAA+CGG | 0.515154 | 4.4:-4484408 | None:intergenic |
| TGAATTGTTTGAGGAAGCTA+GGG | 0.515510 | 4.4:+4484930 | MS.gene20209:CDS |
| GAGACTGGGTTCACCTTCAA+CGG | 0.515665 | 4.4:-4483834 | None:intergenic |
| TTCGGGGCGGAGGTCCACCT+GGG | 0.520899 | 4.4:-4483526 | None:intergenic |
| ACTACTGCAGAGGAGATTGC+TGG | 0.521317 | 4.4:+4484601 | MS.gene20209:CDS |
| TCTTAGAATTTACTCGAAGC+CGG | 0.521538 | 4.4:+4484570 | MS.gene20209:CDS |
| AGAATATGTGCTGAAATTGA+GGG | 0.521695 | 4.4:+4485508 | MS.gene20209:CDS |
| ATGCCTGGTCTTGTATCCCC+AGG | 0.530020 | 4.4:+4483509 | MS.gene20209:CDS |
| GAAAGCAGCAAGAGCATGAT+CGG | 0.533567 | 4.4:-4483972 | None:intergenic |
| GCATAGTCGAGTGCTTTGGC+GGG | 0.536165 | 4.4:-4483779 | None:intergenic |
| GAAGGATTTGGAAGCGCGGA+TGG | 0.537538 | 4.4:-4483801 | None:intergenic |
| CGGGCTACTTTGAGAAGGAA+TGG | 0.538375 | 4.4:-4483731 | None:intergenic |
| TTCGGAGAGGAGAGAGTTGG+TGG | 0.539624 | 4.4:-4483681 | None:intergenic |
| GCAGCTACTTACGATGCAAT+GGG | 0.540410 | 4.4:+4485015 | MS.gene20209:CDS |
| CGCCGGAAGCGATAGTGTCG+CGG | 0.541043 | 4.4:-4483751 | None:intergenic |
| CCACCTGGGGATACAAGACC+AGG | 0.542847 | 4.4:-4483512 | None:intergenic |
| TGAAACCTGTCGCTATTTGG+CGG | 0.545497 | 4.4:+4484120 | MS.gene20209:CDS |
| TCTGCAGTAGTTCCAGGAAC+CGG | 0.546580 | 4.4:-4484589 | None:intergenic |
| TCGGGTAAGGAGATTCGGGG+CGG | 0.551979 | 4.4:-4483539 | None:intergenic |
| CTCATGGCGAGGTCGAGACT+GGG | 0.554197 | 4.4:-4483848 | None:intergenic |
| GGCGAAAGGTGATTATGAAT+CGG | 0.554761 | 4.4:+4484279 | MS.gene20209:CDS |
| TGCGGGGATAGAAGCACGGA+TGG | 0.555487 | 4.4:+4484741 | MS.gene20209:CDS |
| CACGCTCAACATCAGGAACA+TGG | 0.557170 | 4.4:-4483946 | None:intergenic |
| CTGATTTGTATCATAGGACA+GGG | 0.557711 | 4.4:+4484512 | MS.gene20209:CDS |
| CTTGGAGCGTGAAGAAGGGG+AGG | 0.558571 | 4.4:-4483636 | None:intergenic |
| GGAGCTTTGTAACAAAACCT+TGG | 0.561166 | 4.4:+4484180 | MS.gene20209:CDS |
| GCCGGAAGCGATAGTGTCGC+GGG | 0.567266 | 4.4:-4483750 | None:intergenic |
| AACTGAGAACCAGTGGGGAA+AGG | 0.570086 | 4.4:+4484830 | MS.gene20209:CDS |
| CTCTTGAAGAAGCTGCAGAT+CGG | 0.571252 | 4.4:+4484233 | MS.gene20209:CDS |
| TTCAACGGCGCAGCGTTCGA+AGG | 0.574087 | 4.4:-4483819 | None:intergenic |
| CCTTGTCATCAAGATACTCT+CGG | 0.579132 | 4.4:+4484976 | MS.gene20209:CDS |
| ACAAGAGGTGGCCTGGTTTG+GGG | 0.579756 | 4.4:+4485684 | MS.gene20209:CDS |
| GTTTCGGGTAAGGAGATTCG+GGG | 0.581165 | 4.4:-4483542 | None:intergenic |
| GGCGAGGACATGGAGGCTCA+TGG | 0.583135 | 4.4:-4483864 | None:intergenic |
| AAATTCAAAGAGGACAAAGA+AGG | 0.585661 | 4.4:+4485655 | MS.gene20209:CDS |
| GGCTTCGGAGAGGAGAGAGT+TGG | 0.588584 | 4.4:-4483684 | None:intergenic |
| GAAGGAATGGACCTAGATCT+GGG | 0.589878 | 4.4:-4483718 | None:intergenic |
| TTTCTTGGAGCGTGAAGAAG+GGG | 0.590224 | 4.4:-4483639 | None:intergenic |
| TAAATTCTAAACCCCAAACC+AGG | 0.601983 | 4.4:-4485695 | None:intergenic |
| GAAGGCAATGAAATTGTTGG+AGG | 0.603285 | 4.4:+4484693 | MS.gene20209:CDS |
| TGGGGATACAAGACCAGGCA+TGG | 0.605802 | 4.4:-4483507 | None:intergenic |
| CCGAGAGTATCTTGATGACA+AGG | 0.605990 | 4.4:-4484976 | None:intergenic |
| TTTCAACACAGCACTCTCAA+AGG | 0.608981 | 4.4:-4484809 | None:intergenic |
| GGATTCGGATCTTTGAGTAG+GGG | 0.610218 | 4.4:-4483564 | None:intergenic |
| AGGTGATTATGAATCGGCGT+TGG | 0.611553 | 4.4:+4484285 | MS.gene20209:CDS |
| AAATTGAGGGAAGAGAAGCT+TGG | 0.612289 | 4.4:+4485521 | MS.gene20209:CDS |
| GGAATTCTTGAACAAGAATG+TGG | 0.615719 | 4.4:+4484952 | MS.gene20209:CDS |
| ACTTATGGCGTTGATTTGTG+AGG | 0.616428 | 4.4:+4484258 | MS.gene20209:CDS |
| AGAAGGAGAGTAACAAGAGG+TGG | 0.616790 | 4.4:+4485672 | MS.gene20209:CDS |
| ACAAACACCGAAGCAACAGA+AGG | 0.618356 | 4.4:-4484481 | None:intergenic |
| GGTTTCACCGACGCGTGGAT+CGG | 0.621169 | 4.4:-4484104 | None:intergenic |
| GAGTGATGTATTATATGATT+GGG | 0.621428 | 4.4:+4484764 | MS.gene20209:CDS |
| ACGGTGTTTAAGTCGTCCAA+AGG | 0.621832 | 4.4:+4484448 | MS.gene20209:CDS |
| AAATTGTTGGAGGATAAACC+TGG | 0.621852 | 4.4:+4484703 | MS.gene20209:CDS |
| TGAATCTGTTGATGATCCAG+AGG | 0.624576 | 4.4:+4484651 | MS.gene20209:CDS |
| TTGGAGCGTGAAGAAGGGGA+GGG | 0.632319 | 4.4:-4483635 | None:intergenic |
| TAGATCTGGGTTATCGAGAG+AGG | 0.632804 | 4.4:-4483705 | None:intergenic |
| TGGACAGCAGAGTACAGTTG+CGG | 0.633649 | 4.4:+4484723 | MS.gene20209:CDS |
| GATTGCTGGTGGTTTGACCG+AGG | 0.633667 | 4.4:+4484615 | MS.gene20209:CDS |
| AACCTGTCGCTATTTGGCGG+AGG | 0.638321 | 4.4:+4484123 | MS.gene20209:CDS |
| TTATTGATCCAAATTCAAAG+AGG | 0.640431 | 4.4:+4485645 | MS.gene20209:CDS |
| TGTCGCGGGCTACTTTGAGA+AGG | 0.646398 | 4.4:-4483736 | None:intergenic |
| CCTGGTCTTGTATCCCCAGG+TGG | 0.646721 | 4.4:+4483512 | MS.gene20209:CDS |
| ATCTGTTGATGATCCAGAGG+AGG | 0.649836 | 4.4:+4484654 | MS.gene20209:CDS |
| TCGGGGCGGAGGTCCACCTG+GGG | 0.650423 | 4.4:-4483525 | None:intergenic |
| CAGTTGCGGGGATAGAAGCA+CGG | 0.652386 | 4.4:+4484737 | MS.gene20209:CDS |
| CGACAGGTTTCACCGACGCG+TGG | 0.652996 | 4.4:-4484109 | None:intergenic |
| GGACATGGAGGCTCATGGCG+AGG | 0.654929 | 4.4:-4483859 | None:intergenic |
| CTACTTACGATGCAATGGGA+AGG | 0.657643 | 4.4:+4485019 | MS.gene20209:CDS |
| GCGGGGATAGAAGCACGGAT+GGG | 0.658266 | 4.4:+4484742 | MS.gene20209:CDS |
| ATGTGCACGATGAATCTCCA+AGG | 0.659328 | 4.4:-4484197 | None:intergenic |
| GATGCAGTTTGATAAAGCAG+AGG | 0.659355 | 4.4:+4484159 | MS.gene20209:CDS |
| GTGTTGAAACTGAGAACCAG+TGG | 0.668236 | 4.4:+4484823 | MS.gene20209:CDS |
| TATCGAGAGAGGCTTCGGAG+AGG | 0.675847 | 4.4:-4483694 | None:intergenic |
| CATGTTCCTGATGTTGAGCG+TGG | 0.676143 | 4.4:+4483947 | MS.gene20209:CDS |
| GTTCGAAGGATTTGGAAGCG+CGG | 0.680525 | 4.4:-4483805 | None:intergenic |
| GACAGCAGAGTACAGTTGCG+GGG | 0.681755 | 4.4:+4484725 | MS.gene20209:CDS |
| ACTGCAGAGGAGATTGCTGG+TGG | 0.682977 | 4.4:+4484604 | MS.gene20209:CDS |
| GGTTCCTGGAACTACTGCAG+AGG | 0.683112 | 4.4:+4484591 | MS.gene20209:CDS |
| AGTATGGCAATGATCGCCAA+CGG | 0.686660 | 4.4:+4484325 | MS.gene20209:CDS |
| TGTTGAAACTGAGAACCAGT+GGG | 0.688448 | 4.4:+4484824 | MS.gene20209:CDS |
| AAATCGCGGCGAGGACATGG+AGG | 0.690731 | 4.4:-4483871 | None:intergenic |
| CAAAGAAGGAGAGTAACAAG+AGG | 0.698382 | 4.4:+4485669 | MS.gene20209:CDS |
| GGTGATACCGATCCACGCGT+CGG | 0.708941 | 4.4:+4484097 | MS.gene20209:CDS |
| AGCTACAGTAAATCGCGGCG+AGG | 0.710117 | 4.4:-4483880 | None:intergenic |
| TATGATTGGGAAGTACGATG+AGG | 0.711774 | 4.4:+4484777 | MS.gene20209:CDS |
| GTTTAAGCTACAGTAAATCG+CGG | 0.716838 | 4.4:-4483885 | None:intergenic |
| GCGTTGATTTGTGAGGCGAA+AGG | 0.719934 | 4.4:+4484265 | MS.gene20209:CDS |
| GAATTGTTTGAGGAAGCTAG+GGG | 0.741462 | 4.4:+4484931 | MS.gene20209:CDS |
| GTTGAAACTGAGAACCAGTG+GGG | 0.823327 | 4.4:+4484825 | MS.gene20209:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATAGCTTCATCAAAA+CGG | - | chr4.4:4484411-4484430 | None:intergenic | 20.0% |
| !! | AAGATTGTTAAAAAGAGAAA+GGG | - | chr4.4:4485057-4485076 | None:intergenic | 20.0% |
| !! | TAAGATTGTTAAAAAGAGAA+AGG | - | chr4.4:4485058-4485077 | None:intergenic | 20.0% |
| ! | ACTAAATTGTTTATCCAAAC+CGG | - | chr4.4:4485101-4485120 | None:intergenic | 25.0% |
| ! | ATAAACAAGACCTTATCTTA+GGG | - | chr4.4:4485144-4485163 | None:intergenic | 25.0% |
| ! | GAGTGATGTATTATATGATT+GGG | + | chr4.4:4484764-4484783 | MS.gene20209:CDS | 25.0% |
| ! | TATAAACAAGACCTTATCTT+AGG | - | chr4.4:4485145-4485164 | None:intergenic | 25.0% |
| ! | TCCTTGATCATACATTAAAA+TGG | - | chr4.4:4484053-4484072 | None:intergenic | 25.0% |
| ! | TTATTGATCCAAATTCAAAG+AGG | + | chr4.4:4485645-4485664 | MS.gene20209:CDS | 25.0% |
| ! | TTTATAACAAGTGCATAAGT+TGG | - | chr4.4:4485325-4485344 | None:intergenic | 25.0% |
| !!! | TCCATTTTAATGTATGATCA+AGG | + | chr4.4:4484049-4484068 | MS.gene20209:CDS | 25.0% |
| AAATTCAAAGAGGACAAAGA+AGG | + | chr4.4:4485655-4485674 | MS.gene20209:CDS | 30.0% | |
| AGAATATGTGCTGAAATTGA+GGG | + | chr4.4:4485508-4485527 | MS.gene20209:CDS | 30.0% | |
| ATTTCCAATACTCACATCAA+TGG | - | chr4.4:4484371-4484390 | None:intergenic | 30.0% | |
| CTAAATTGTTTATCCAAACC+GGG | - | chr4.4:4485100-4485119 | None:intergenic | 30.0% | |
| GGAGTGATGTATTATATGAT+TGG | + | chr4.4:4484763-4484782 | MS.gene20209:CDS | 30.0% | |
| GTTTGATTCAATATTATGCC+CGG | + | chr4.4:4485079-4485098 | MS.gene20209:intron | 30.0% | |
| TAAACAAGACCTTATCTTAG+GGG | - | chr4.4:4485143-4485162 | None:intergenic | 30.0% | |
| TAGAATATGTGCTGAAATTG+AGG | + | chr4.4:4485507-4485526 | MS.gene20209:CDS | 30.0% | |
| TTCTTTGTCCTCTTTGAATT+TGG | - | chr4.4:4485656-4485675 | None:intergenic | 30.0% | |
| !! | GTTTAGCTGATTTGTATCAT+AGG | + | chr4.4:4484506-4484525 | MS.gene20209:CDS | 30.0% |
| !!! | GAAAGGAAATCTGCATTTTT+TGG | + | chr4.4:4484847-4484866 | MS.gene20209:CDS | 30.0% |
| AAATTGTTGGAGGATAAACC+TGG | + | chr4.4:4484703-4484722 | MS.gene20209:CDS | 35.0% | |
| AACTTCATTATCTTGACCGT+TGG | - | chr4.4:4484344-4484363 | None:intergenic | 35.0% | |
| AAGCACTAGTGAAATTCTTC+AGG | - | chr4.4:4485366-4485385 | None:intergenic | 35.0% | |
| AGACAGAAAAGCAAAGTCTT+TGG | + | chr4.4:4485616-4485635 | MS.gene20209:CDS | 35.0% | |
| AGCACTAGTGAAATTCTTCA+GGG | - | chr4.4:4485365-4485384 | None:intergenic | 35.0% | |
| ATTCAATATTATGCCCGGTT+TGG | + | chr4.4:4485084-4485103 | MS.gene20209:intron | 35.0% | |
| ATTTCACTAGTGCTTATGTG+TGG | + | chr4.4:4485371-4485390 | MS.gene20209:intron | 35.0% | |
| CAAATTCAGATCCAAACGTT+AGG | + | chr4.4:4484076-4484095 | MS.gene20209:CDS | 35.0% | |
| GGAATTCTTGAACAAGAATG+TGG | + | chr4.4:4484952-4484971 | MS.gene20209:CDS | 35.0% | |
| GTGATGATATGATTCAGAGT+TGG | + | chr4.4:4485467-4485486 | MS.gene20209:intron | 35.0% | |
| GTTTAAGCTACAGTAAATCG+CGG | - | chr4.4:4483888-4483907 | None:intergenic | 35.0% | |
| TAAATTCTAAACCCCAAACC+AGG | - | chr4.4:4485698-4485717 | None:intergenic | 35.0% | |
| TAGTATAAGCCCCTAAGATA+AGG | + | chr4.4:4485131-4485150 | MS.gene20209:intron | 35.0% | |
| TCTTAGAATTTACTCGAAGC+CGG | + | chr4.4:4484570-4484589 | MS.gene20209:CDS | 35.0% | |
| TGAATTGTTTGAGGAAGCTA+GGG | + | chr4.4:4484930-4484949 | MS.gene20209:CDS | 35.0% | |
| TTCAAATATCGCTGAAACCT+CGG | - | chr4.4:4484635-4484654 | None:intergenic | 35.0% | |
| ! | AAATCATCCTTCTGTTGCTT+CGG | + | chr4.4:4484474-4484493 | MS.gene20209:CDS | 35.0% |
| ! | AGAAGGATGATTTTCACCTT+TGG | - | chr4.4:4484467-4484486 | None:intergenic | 35.0% |
| ! | CTGATTTGTATCATAGGACA+GGG | + | chr4.4:4484512-4484531 | MS.gene20209:CDS | 35.0% |
| !! | TGTTTTGAATCAGATGGGAT+TGG | + | chr4.4:4484873-4484892 | MS.gene20209:CDS | 35.0% |
| !! | TTCTTATCAGAAAGCGCTTA+CGG | + | chr4.4:4484429-4484448 | MS.gene20209:CDS | 35.0% |
| !!! | GAGAAGGTGGTTTTTTGTTA+GGG | - | chr4.4:4483616-4483635 | None:intergenic | 35.0% |
| !!! | GGTGTTGTTTTGAATCAGAT+GGG | + | chr4.4:4484868-4484887 | MS.gene20209:CDS | 35.0% |
| !!! | TGGTGTTGTTTTGAATCAGA+TGG | + | chr4.4:4484867-4484886 | MS.gene20209:CDS | 35.0% |
| AAATTGAGGGAAGAGAAGCT+TGG | + | chr4.4:4485521-4485540 | MS.gene20209:CDS | 40.0% | |
| AGGATTCGGATCTTTGAGTA+GGG | - | chr4.4:4483568-4483587 | None:intergenic | 40.0% | |
| CAAAGAAGGAGAGTAACAAG+AGG | + | chr4.4:4485669-4485688 | MS.gene20209:CDS | 40.0% | |
| CCTTGTCATCAAGATACTCT+CGG | + | chr4.4:4484976-4484995 | MS.gene20209:CDS | 40.0% | |
| CGCTTCTCATCTTCAAAATC+AGG | - | chr4.4:4485557-4485576 | None:intergenic | 40.0% | |
| CTGAATTGTTTGAGGAAGCT+AGG | + | chr4.4:4484929-4484948 | MS.gene20209:CDS | 40.0% | |
| GAAGGCAATGAAATTGTTGG+AGG | + | chr4.4:4484693-4484712 | MS.gene20209:CDS | 40.0% | |
| GAATTGTTTGAGGAAGCTAG+GGG | + | chr4.4:4484931-4484950 | MS.gene20209:CDS | 40.0% | |
| GATGCAGTTTGATAAAGCAG+AGG | + | chr4.4:4484159-4484178 | MS.gene20209:CDS | 40.0% | |
| GCAGAAGGCAATGAAATTGT+TGG | + | chr4.4:4484690-4484709 | MS.gene20209:CDS | 40.0% | |
| GCTTCCATTGATGTGAGTAT+TGG | + | chr4.4:4484364-4484383 | MS.gene20209:CDS | 40.0% | |
| GGCGAAAGGTGATTATGAAT+CGG | + | chr4.4:4484279-4484298 | MS.gene20209:CDS | 40.0% | |
| GTCACCTAACTGCATATAAC+CGG | - | chr4.4:4483999-4484018 | None:intergenic | 40.0% | |
| TGAAGCTGCTGAATTGTTTG+AGG | + | chr4.4:4484921-4484940 | MS.gene20209:CDS | 40.0% | |
| TGTTGAAACTGAGAACCAGT+GGG | + | chr4.4:4484824-4484843 | MS.gene20209:CDS | 40.0% | |
| TTCTCCGGTTATATGCAGTT+AGG | + | chr4.4:4483992-4484011 | MS.gene20209:CDS | 40.0% | |
| TTTCAACACAGCACTCTCAA+AGG | - | chr4.4:4484812-4484831 | None:intergenic | 40.0% | |
| TTTGTTAGGGAGTGGTGATT+GGG | - | chr4.4:4483603-4483622 | None:intergenic | 40.0% | |
| ! | GGAGCTTTGTAACAAAACCT+TGG | + | chr4.4:4484180-4484199 | MS.gene20209:CDS | 40.0% |
| ! | TATGATTGGGAAGTACGATG+AGG | + | chr4.4:4484777-4484796 | MS.gene20209:CDS | 40.0% |
| ! | TTTTCTTGGAGCGTGAAGAA+GGG | - | chr4.4:4483643-4483662 | None:intergenic | 40.0% |
| ! | TTTTGTTAGGGAGTGGTGAT+TGG | - | chr4.4:4483604-4483623 | None:intergenic | 40.0% |
| ! | TTTTTCTTGGAGCGTGAAGA+AGG | - | chr4.4:4483644-4483663 | None:intergenic | 40.0% |
| !! | ACTTATGGCGTTGATTTGTG+AGG | + | chr4.4:4484258-4484277 | MS.gene20209:CDS | 40.0% |
| !! | GCTGATTTGTATCATAGGAC+AGG | + | chr4.4:4484511-4484530 | MS.gene20209:CDS | 40.0% |
| !! | TGAATCTGTTGATGATCCAG+AGG | + | chr4.4:4484651-4484670 | MS.gene20209:CDS | 40.0% |
| !!! | GGAGAAGGTGGTTTTTTGTT+AGG | - | chr4.4:4483617-4483636 | None:intergenic | 40.0% |
| !!! | GGTGACACTTTTTCGATGTT+AGG | + | chr4.4:4484013-4484032 | MS.gene20209:CDS | 40.0% |
| !!! | GGTTTCGGGTGTTTTTTTCT+TGG | - | chr4.4:4483657-4483676 | None:intergenic | 40.0% |
| ACAAACACCGAAGCAACAGA+AGG | - | chr4.4:4484484-4484503 | None:intergenic | 45.0% | |
| ACGGTGTTTAAGTCGTCCAA+AGG | + | chr4.4:4484448-4484467 | MS.gene20209:CDS | 45.0% | |
| AGAAGGAATGGACCTAGATC+TGG | - | chr4.4:4483722-4483741 | None:intergenic | 45.0% | |
| AGAAGGAGAGTAACAAGAGG+TGG | + | chr4.4:4485672-4485691 | MS.gene20209:CDS | 45.0% | |
| AGGTGATTATGAATCGGCGT+TGG | + | chr4.4:4484285-4484304 | MS.gene20209:CDS | 45.0% | |
| AGTATGGCAATGATCGCCAA+CGG | + | chr4.4:4484325-4484344 | MS.gene20209:CDS | 45.0% | |
| ATGTGCACGATGAATCTCCA+AGG | - | chr4.4:4484200-4484219 | None:intergenic | 45.0% | |
| CAGGAACAGCTTCTTCGAAT+CGG | - | chr4.4:4483910-4483929 | None:intergenic | 45.0% | |
| CTACTTACGATGCAATGGGA+AGG | + | chr4.4:4485019-4485038 | MS.gene20209:CDS | 45.0% | |
| CTCTTGAAGAAGCTGCAGAT+CGG | + | chr4.4:4484233-4484252 | MS.gene20209:CDS | 45.0% | |
| GAAGGAATGGACCTAGATCT+GGG | - | chr4.4:4483721-4483740 | None:intergenic | 45.0% | |
| GAGGATTCGGATCTTTGAGT+AGG | - | chr4.4:4483569-4483588 | None:intergenic | 45.0% | |
| GATCGGTATCACCTAACGTT+TGG | - | chr4.4:4484090-4484109 | None:intergenic | 45.0% | |
| GATCTTTGAGTAGGGGTTTC+GGG | - | chr4.4:4483560-4483579 | None:intergenic | 45.0% | |
| GCAGCTACTTACGATGCAAT+GGG | + | chr4.4:4485015-4485034 | MS.gene20209:CDS | 45.0% | |
| GGATCTTTGAGTAGGGGTTT+CGG | - | chr4.4:4483561-4483580 | None:intergenic | 45.0% | |
| GGATTCGGATCTTTGAGTAG+GGG | - | chr4.4:4483567-4483586 | None:intergenic | 45.0% | |
| GTGTTGAAACTGAGAACCAG+TGG | + | chr4.4:4484823-4484842 | MS.gene20209:CDS | 45.0% | |
| GTTGAAACTGAGAACCAGTG+GGG | + | chr4.4:4484825-4484844 | MS.gene20209:CDS | 45.0% | |
| TAGATCTGGGTTATCGAGAG+AGG | - | chr4.4:4483708-4483727 | None:intergenic | 45.0% | |
| TCTCTCGATAACCCAGATCT+AGG | + | chr4.4:4483707-4483726 | MS.gene20209:CDS | 45.0% | |
| TGAAACCTGTCGCTATTTGG+CGG | + | chr4.4:4484120-4484139 | MS.gene20209:CDS | 45.0% | |
| TGCAGCTACTTACGATGCAA+TGG | + | chr4.4:4485014-4485033 | MS.gene20209:CDS | 45.0% | |
| TTTCTTGGAGCGTGAAGAAG+GGG | - | chr4.4:4483642-4483661 | None:intergenic | 45.0% | |
| ! | GAAAGCAGCAAGAGCATGAT+CGG | - | chr4.4:4483975-4483994 | None:intergenic | 45.0% |
| !! | ATCTGTTGATGATCCAGAGG+AGG | + | chr4.4:4484654-4484673 | MS.gene20209:CDS | 45.0% |
| !! | CCGAGAGTATCTTGATGACA+AGG | - | chr4.4:4484979-4484998 | None:intergenic | 45.0% |
| !!! | GGTGGTTTTTTGTTAGGGAG+TGG | - | chr4.4:4483611-4483630 | None:intergenic | 45.0% |
| !!! | GGTTGGTGTTTTGGAGGATT+CGG | - | chr4.4:4483582-4483601 | None:intergenic | 45.0% |
| !!! | TGATTGGGTTGGTGTTTTGG+AGG | - | chr4.4:4483588-4483607 | None:intergenic | 45.0% |
| !!! | TGGTGATTGGGTTGGTGTTT+TGG | - | chr4.4:4483591-4483610 | None:intergenic | 45.0% |
| AAAAGCTTCAACGCCTCCTC+TGG | - | chr4.4:4484670-4484689 | None:intergenic | 50.0% | |
| AACAAGAGGTGGCCTGGTTT+GGG | + | chr4.4:4485683-4485702 | MS.gene20209:CDS | 50.0% | |
| AACTGAGAACCAGTGGGGAA+AGG | + | chr4.4:4484830-4484849 | MS.gene20209:CDS | 50.0% | |
| ACTACTGCAGAGGAGATTGC+TGG | + | chr4.4:4484601-4484620 | MS.gene20209:CDS | 50.0% | |
| AGCTGCAGATCGGAGACTTA+TGG | + | chr4.4:4484243-4484262 | MS.gene20209:CDS | 50.0% | |
| ATCTCCTCTGCAGTAGTTCC+AGG | - | chr4.4:4484598-4484617 | None:intergenic | 50.0% | |
| CACGCTCAACATCAGGAACA+TGG | - | chr4.4:4483949-4483968 | None:intergenic | 50.0% | |
| CATGTTCCTGATGTTGAGCG+TGG | + | chr4.4:4483947-4483966 | MS.gene20209:CDS | 50.0% | |
| CGGTGAAACCTGTCGCTATT+TGG | + | chr4.4:4484117-4484136 | MS.gene20209:CDS | 50.0% | |
| GAGACTGGGTTCACCTTCAA+CGG | - | chr4.4:4483837-4483856 | None:intergenic | 50.0% | |
| GATGGCATAGTCGAGTGCTT+TGG | - | chr4.4:4483786-4483805 | None:intergenic | 50.0% | |
| GCAGCTTCTTCAAGAGAAGC+AGG | - | chr4.4:4484229-4484248 | None:intergenic | 50.0% | |
| GCATCTTGTTCTGGCGAGTA+TGG | + | chr4.4:4484309-4484328 | MS.gene20209:CDS | 50.0% | |
| GCTGAGTTGCTGAAAGAAGC+TGG | + | chr4.4:4485584-4485603 | MS.gene20209:CDS | 50.0% | |
| GTTCGAAGGATTTGGAAGCG+CGG | - | chr4.4:4483808-4483827 | None:intergenic | 50.0% | |
| TAACAAGAGGTGGCCTGGTT+TGG | + | chr4.4:4485682-4485701 | MS.gene20209:CDS | 50.0% | |
| TCTGCAGTAGTTCCAGGAAC+CGG | - | chr4.4:4484592-4484611 | None:intergenic | 50.0% | |
| TGCAGATTTCCTTTCCCCAC+TGG | - | chr4.4:4484842-4484861 | None:intergenic | 50.0% | |
| TGGACAGCAGAGTACAGTTG+CGG | + | chr4.4:4484723-4484742 | MS.gene20209:CDS | 50.0% | |
| TGGGTTATCGAGAGAGGCTT+CGG | - | chr4.4:4483702-4483721 | None:intergenic | 50.0% | |
| TTAGGGAGTGGTGATTGGGT+TGG | - | chr4.4:4483599-4483618 | None:intergenic | 50.0% | |
| ! | ATTTACTCGAAGCCGGTTCC+TGG | + | chr4.4:4484577-4484596 | MS.gene20209:CDS | 50.0% |
| ! | CGGGCTACTTTGAGAAGGAA+TGG | - | chr4.4:4483734-4483753 | None:intergenic | 50.0% |
| ! | GGGTTTCGGGTAAGGAGATT+CGG | - | chr4.4:4483547-4483566 | None:intergenic | 50.0% |
| ! | GGTTTCGGGTAAGGAGATTC+GGG | - | chr4.4:4483546-4483565 | None:intergenic | 50.0% |
| ! | GTTTCGGGTAAGGAGATTCG+GGG | - | chr4.4:4483545-4483564 | None:intergenic | 50.0% |
| ! | TTGAGTAGGGGTTTCGGGTA+AGG | - | chr4.4:4483555-4483574 | None:intergenic | 50.0% |
| !! | AGAGGAGAGAGTTGGTGGTA+GGG | - | chr4.4:4483679-4483698 | None:intergenic | 50.0% |
| !! | AGAGTTGGTGGTAGGGGTTT+CGG | - | chr4.4:4483672-4483691 | None:intergenic | 50.0% |
| !! | CATGCTCTTGCTGCTTTCTC+CGG | + | chr4.4:4483977-4483996 | MS.gene20209:CDS | 50.0% |
| !! | GCGTTGATTTGTGAGGCGAA+AGG | + | chr4.4:4484265-4484284 | MS.gene20209:CDS | 50.0% |
| !! | GGCGTTGAAGCTTTTGCAGA+AGG | + | chr4.4:4484675-4484694 | MS.gene20209:CDS | 50.0% |
| AACCTGTCGCTATTTGGCGG+AGG | + | chr4.4:4484123-4484142 | MS.gene20209:CDS | 55.0% | |
| ACACTATCGCTTCCGGCGAT+GGG | + | chr4.4:4483756-4483775 | MS.gene20209:CDS | 55.0% | |
| ACTGCAGAGGAGATTGCTGG+TGG | + | chr4.4:4484604-4484623 | MS.gene20209:CDS | 55.0% | |
| AGCTACAGTAAATCGCGGCG+AGG | - | chr4.4:4483883-4483902 | None:intergenic | 55.0% | |
| AGTAAATCGCGGCGAGGACA+TGG | - | chr4.4:4483877-4483896 | None:intergenic | 55.0% | |
| CAGTTGCGGGGATAGAAGCA+CGG | + | chr4.4:4484737-4484756 | MS.gene20209:CDS | 55.0% | |
| GACAGCAGAGTACAGTTGCG+GGG | + | chr4.4:4484725-4484744 | MS.gene20209:CDS | 55.0% | |
| GAGAGTAACAAGAGGTGGCC+TGG | + | chr4.4:4485677-4485696 | MS.gene20209:CDS | 55.0% | |
| GATTGCTGGTGGTTTGACCG+AGG | + | chr4.4:4484615-4484634 | MS.gene20209:CDS | 55.0% | |
| GCAACTGTACTCTGCTGTCC+AGG | - | chr4.4:4484724-4484743 | None:intergenic | 55.0% | |
| GCATAGTCGAGTGCTTTGGC+GGG | - | chr4.4:4483782-4483801 | None:intergenic | 55.0% | |
| GGACAGCAGAGTACAGTTGC+GGG | + | chr4.4:4484724-4484743 | MS.gene20209:CDS | 55.0% | |
| GGCATAGTCGAGTGCTTTGG+CGG | - | chr4.4:4483783-4483802 | None:intergenic | 55.0% | |
| GGTTCCTGGAACTACTGCAG+AGG | + | chr4.4:4484591-4484610 | MS.gene20209:CDS | 55.0% | |
| TATCGAGAGAGGCTTCGGAG+AGG | - | chr4.4:4483697-4483716 | None:intergenic | 55.0% | |
| TTCGGAGAGGAGAGAGTTGG+TGG | - | chr4.4:4483684-4483703 | None:intergenic | 55.0% | |
| TTGGAGCGTGAAGAAGGGGA+GGG | - | chr4.4:4483638-4483657 | None:intergenic | 55.0% | |
| TTTGGCGGAGGCGAATGTTC+AGG | + | chr4.4:4484135-4484154 | MS.gene20209:CDS | 55.0% | |
| ! | ACAAGAGGTGGCCTGGTTTG+GGG | + | chr4.4:4485684-4485703 | MS.gene20209:CDS | 55.0% |
| ! | GAAGGATTTGGAAGCGCGGA+TGG | - | chr4.4:4483804-4483823 | None:intergenic | 55.0% |
| ! | GGCGTTGGAGCATCTTGTTC+TGG | + | chr4.4:4484300-4484319 | MS.gene20209:CDS | 55.0% |
| ! | TGTCGCGGGCTACTTTGAGA+AGG | - | chr4.4:4483739-4483758 | None:intergenic | 55.0% |
| !! | ATGCCTGGTCTTGTATCCCC+AGG | + | chr4.4:4483509-4483528 | MS.gene20209:CDS | 55.0% |
| !! | GAGAGGAGAGAGTTGGTGGT+AGG | - | chr4.4:4483680-4483699 | None:intergenic | 55.0% |
| !! | GAGGAGAGAGTTGGTGGTAG+GGG | - | chr4.4:4483678-4483697 | None:intergenic | 55.0% |
| !! | GAGTTGGTGGTAGGGGTTTC+GGG | - | chr4.4:4483671-4483690 | None:intergenic | 55.0% |
| AAATCGCGGCGAGGACATGG+AGG | - | chr4.4:4483874-4483893 | None:intergenic | 60.0% | |
| CCACCTGGGGATACAAGACC+AGG | - | chr4.4:4483515-4483534 | None:intergenic | 60.0% | |
| CGTGAAGAAGGGGAGGGAGA+AGG | - | chr4.4:4483632-4483651 | None:intergenic | 60.0% | |
| CTCATGGCGAGGTCGAGACT+GGG | - | chr4.4:4483851-4483870 | None:intergenic | 60.0% | |
| CTTGGAGCGTGAAGAAGGGG+AGG | - | chr4.4:4483639-4483658 | None:intergenic | 60.0% | |
| GAAGAAGGGGAGGGAGAAGG+TGG | - | chr4.4:4483629-4483648 | None:intergenic | 60.0% | |
| GACACTATCGCTTCCGGCGA+TGG | + | chr4.4:4483755-4483774 | MS.gene20209:CDS | 60.0% | |
| GGCGCAGCGTTCGAAGGATT+TGG | - | chr4.4:4483816-4483835 | None:intergenic | 60.0% | |
| GGCTTCGGAGAGGAGAGAGT+TGG | - | chr4.4:4483687-4483706 | None:intergenic | 60.0% | |
| GGTGATACCGATCCACGCGT+CGG | + | chr4.4:4484097-4484116 | MS.gene20209:CDS | 60.0% | |
| GGTTTCACCGACGCGTGGAT+CGG | - | chr4.4:4484107-4484126 | None:intergenic | 60.0% | |
| TCGGCACCACGCTCAACATC+AGG | - | chr4.4:4483956-4483975 | None:intergenic | 60.0% | |
| TCGGGTAAGGAGATTCGGGG+CGG | - | chr4.4:4483542-4483561 | None:intergenic | 60.0% | |
| TGGATCGCGCGTTCGAGAAC+AGG | - | chr4.4:4483929-4483948 | None:intergenic | 60.0% | |
| TTCAACGGCGCAGCGTTCGA+AGG | - | chr4.4:4483822-4483841 | None:intergenic | 60.0% | |
| TTCGAACGCTGCGCCGTTGA+AGG | + | chr4.4:4483821-4483840 | MS.gene20209:CDS | 60.0% | |
| ! | GCGGGGATAGAAGCACGGAT+GGG | + | chr4.4:4484742-4484761 | MS.gene20209:CDS | 60.0% |
| ! | TGCGGGGATAGAAGCACGGA+TGG | + | chr4.4:4484741-4484760 | MS.gene20209:CDS | 60.0% |
| !! | CCTGGTCTTGTATCCCCAGG+TGG | + | chr4.4:4483512-4483531 | MS.gene20209:CDS | 60.0% |
| CGACAGGTTTCACCGACGCG+TGG | - | chr4.4:4484112-4484131 | None:intergenic | 65.0% | |
| CGCCGGAAGCGATAGTGTCG+CGG | - | chr4.4:4483754-4483773 | None:intergenic | 65.0% | |
| CGCCTCCGCCAAATAGCGAC+AGG | - | chr4.4:4484128-4484147 | None:intergenic | 65.0% | |
| GCCCGCGACACTATCGCTTC+CGG | + | chr4.4:4483749-4483768 | MS.gene20209:CDS | 65.0% | |
| GCCGGAAGCGATAGTGTCGC+GGG | - | chr4.4:4483753-4483772 | None:intergenic | 65.0% | |
| GCTCATGGCGAGGTCGAGAC+TGG | - | chr4.4:4483852-4483871 | None:intergenic | 65.0% | |
| GGACATGGAGGCTCATGGCG+AGG | - | chr4.4:4483862-4483881 | None:intergenic | 65.0% | |
| GGCGAGGACATGGAGGCTCA+TGG | - | chr4.4:4483867-4483886 | None:intergenic | 65.0% | |
| GGTAAGGAGATTCGGGGCGG+AGG | - | chr4.4:4483539-4483558 | None:intergenic | 65.0% | |
| ATTCGGGGCGGAGGTCCACC+TGG | - | chr4.4:4483530-4483549 | None:intergenic | 70.0% | |
| TTCGGGGCGGAGGTCCACCT+GGG | - | chr4.4:4483529-4483548 | None:intergenic | 70.0% | |
| ! | TGCTTTGGCGGGCCCATCGC+CGG | - | chr4.4:4483771-4483790 | None:intergenic | 70.0% |
| TCGGGGCGGAGGTCCACCTG+GGG | - | chr4.4:4483528-4483547 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4483509 | 4485718 | 4483509 | ID=MS.gene20209 |
| chr4.4 | mRNA | 4483509 | 4485718 | 4483509 | ID=MS.gene20209.t1;Parent=MS.gene20209 |
| chr4.4 | exon | 4483509 | 4485040 | 4483509 | ID=MS.gene20209.t1.exon1;Parent=MS.gene20209.t1 |
| chr4.4 | CDS | 4483509 | 4485040 | 4483509 | ID=cds.MS.gene20209.t1;Parent=MS.gene20209.t1 |
| chr4.4 | exon | 4485484 | 4485718 | 4485484 | ID=MS.gene20209.t1.exon2;Parent=MS.gene20209.t1 |
| chr4.4 | CDS | 4485484 | 4485718 | 4485484 | ID=cds.MS.gene20209.t1;Parent=MS.gene20209.t1 |
| Gene Sequence |
| Protein sequence |
