Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20212.t1 | XP_013447237.1 | 85.6 | 194 | 28 | 0 | 1 | 194 | 1 | 194 | 5.00E-85 | 323.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20212.t1 | Q8VY91 | 79.0 | 157 | 31 | 2 | 41 | 195 | 50 | 206 | 4.9e-65 | 248.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20212.t1 | A0A072TUR4 | 85.6 | 194 | 28 | 0 | 1 | 194 | 1 | 194 | 3.6e-85 | 323.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene20212 | 0.811481 | 6.85E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene20212 | 0.8145 | 1.49E-51 | -1.69E-46 |
| MS.gene057011 | MS.gene20212 | 0.809513 | 1.82E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene20212 | 0.844768 | 6.16E-59 | -1.69E-46 |
| MS.gene059536 | MS.gene20212 | 0.810208 | 1.29E-50 | -1.69E-46 |
| MS.gene059960 | MS.gene20212 | 0.804236 | 2.38E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20212.t1 | MTR_8g099720 | 94.330 | 194 | 11 | 0 | 1 | 194 | 1 | 194 | 3.06e-137 | 381 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20212.t1 | AT1G64510 | 67.961 | 206 | 55 | 5 | 1 | 195 | 1 | 206 | 7.01e-90 | 262 |
| MS.gene20212.t1 | AT1G64510 | 67.961 | 206 | 55 | 5 | 1 | 195 | 25 | 230 | 1.52e-89 | 262 |
Find 56 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGACCTCCTCGTACTTC+TGG | 0.218535 | 4.4:-4538682 | None:intergenic |
| CGGAAAAGTTGTTCCTGTTT+TGG | 0.256932 | 4.4:-4538460 | None:intergenic |
| TTTGTGCAGCTTCTTGTTGC+TGG | 0.267997 | 4.4:+4539880 | MS.gene20212:intron |
| TCTTTCTTTGAAGGTGGATT+TGG | 0.299334 | 4.4:+4538512 | MS.gene20212:CDS |
| CTTTGAAGGTGGATTTGGTT+CGG | 0.301133 | 4.4:+4538517 | MS.gene20212:CDS |
| TTCTCTGGTTCTTTCTTTGA+AGG | 0.306160 | 4.4:+4538503 | MS.gene20212:CDS |
| TGAAAGTGGGAAATTGATTC+AGG | 0.316800 | 4.4:-4538437 | None:intergenic |
| TGTTTGCTCAAGGGCGGTTA+TGG | 0.323023 | 4.4:-4540043 | None:intergenic |
| AACCCGGTTCCGGGAGTAAC+CGG | 0.325603 | 4.4:-4538548 | None:intergenic |
| CAAGCTTCAAAATCAGAAAA+AGG | 0.332411 | 4.4:+4540097 | MS.gene20212:CDS |
| CACAGCAGTGAACCCGGTTC+CGG | 0.337320 | 4.4:-4538558 | None:intergenic |
| GACCCGGTTACTCCCGGAAC+CGG | 0.340544 | 4.4:+4538545 | MS.gene20212:CDS |
| ACAGCAGTGAACCCGGTTCC+GGG | 0.353594 | 4.4:-4538557 | None:intergenic |
| TTTCCCACTTTCACCAAAAC+AGG | 0.358476 | 4.4:+4538447 | MS.gene20212:CDS |
| GCCTAGGGTTTCTGCTTTAA+CGG | 0.367900 | 4.4:-4538480 | None:intergenic |
| TTTGAAGGTGGATTTGGTTC+GGG | 0.368108 | 4.4:+4538518 | MS.gene20212:CDS |
| AGGAGAAACCAACACGTATA+TGG | 0.379973 | 4.4:+4539978 | MS.gene20212:CDS |
| CAGCTTCTTGTTGCTGGAGG+TGG | 0.388533 | 4.4:+4539886 | MS.gene20212:intron |
| GCAGAAACCCTAGGCTTCTC+TGG | 0.408153 | 4.4:+4538488 | MS.gene20212:CDS |
| TTTGACCTCCTCGTACTTCT+GGG | 0.421257 | 4.4:-4538681 | None:intergenic |
| AGAAAAGAAGAAGATGAAAG+TGG | 0.446274 | 4.4:-4538377 | None:intergenic |
| GATTCAGGAAATGCACGAAA+TGG | 0.457389 | 4.4:-4538422 | None:intergenic |
| TCTGGTTCTTTCTTTGAAGG+TGG | 0.458081 | 4.4:+4538506 | MS.gene20212:CDS |
| AGAAAGAACCAGAGAAGCCT+AGG | 0.460314 | 4.4:-4538496 | None:intergenic |
| CGCTCATCCTCAGACATGTC+AGG | 0.460581 | 4.4:-4538647 | None:intergenic |
| CTCTTCCACAGCAGTGAACC+CGG | 0.461041 | 4.4:-4538564 | None:intergenic |
| GCTTCGTGAAGTAGGTGAAT+AGG | 0.462140 | 4.4:-4540014 | None:intergenic |
| CCTTGAGCAAACACTATTGA+CGG | 0.475105 | 4.4:+4540053 | MS.gene20212:CDS |
| ACTCAGACAGTACGAAACTA+TGG | 0.491052 | 4.4:+4538613 | MS.gene20212:CDS |
| CGGAACCGGGTTCACTGCTG+TGG | 0.505880 | 4.4:+4538559 | MS.gene20212:CDS |
| GGACTCAGGCTTCGTGAAGT+AGG | 0.512180 | 4.4:-4540022 | None:intergenic |
| TCAAGGGCGGTTATGGACTC+AGG | 0.515051 | 4.4:-4540036 | None:intergenic |
| TTCTGGATGCTATATGCTAG+TGG | 0.517463 | 4.4:-4539943 | None:intergenic |
| ATTTGGTTCGGGTGATGACC+CGG | 0.523594 | 4.4:+4538529 | MS.gene20212:CDS |
| GTGCAGCTTCTTGTTGCTGG+AGG | 0.528018 | 4.4:+4539883 | MS.gene20212:intron |
| TGGAATTGAATTGAGTAAAG+AGG | 0.543427 | 4.4:-4538357 | None:intergenic |
| TCCGTTAAAGCAGAAACCCT+AGG | 0.546122 | 4.4:+4538479 | MS.gene20212:CDS |
| CCGTCAATAGTGTTTGCTCA+AGG | 0.548980 | 4.4:-4540053 | None:intergenic |
| GGTGATGACCCGGTTACTCC+CGG | 0.551404 | 4.4:+4538539 | MS.gene20212:CDS |
| ACCCGGTTCCGGGAGTAACC+GGG | 0.557475 | 4.4:-4538547 | None:intergenic |
| CGTCAATAGTGTTTGCTCAA+GGG | 0.562059 | 4.4:-4540052 | None:intergenic |
| GAAGAACCGCAATGTCCACC+TGG | 0.563779 | 4.4:+4538590 | MS.gene20212:CDS |
| GTTTCGTACTGTCTGAGTCC+AGG | 0.567223 | 4.4:-4538608 | None:intergenic |
| ACCCGGTTACTCCCGGAACC+GGG | 0.574089 | 4.4:+4538546 | MS.gene20212:CDS |
| GATGCCGTCCATATACGTGT+TGG | 0.610520 | 4.4:-4539986 | None:intergenic |
| GAAAGAACCAGAGAAGCCTA+GGG | 0.615293 | 4.4:-4538495 | None:intergenic |
| CTGAGTCCAGGTGGACATTG+CGG | 0.619818 | 4.4:-4538596 | None:intergenic |
| TCGTGAAGTAGGTGAATAGG+AGG | 0.634881 | 4.4:-4540011 | None:intergenic |
| CAATAGTGTTTGCTCAAGGG+CGG | 0.640418 | 4.4:-4540049 | None:intergenic |
| GAAACCAACACGTATATGGA+CGG | 0.655460 | 4.4:+4539982 | MS.gene20212:CDS |
| TGGAGGTGGCATGTATGTAG+AGG | 0.659352 | 4.4:+4539900 | MS.gene20212:CDS |
| TTTAAGGCCTGACATGTCTG+AGG | 0.660772 | 4.4:+4538640 | MS.gene20212:CDS |
| TGCACTCACCCAGAAGTACG+AGG | 0.696215 | 4.4:+4538673 | MS.gene20212:CDS |
| CGAAATGGAGAAGATGACTG+AGG | 0.700648 | 4.4:-4538407 | None:intergenic |
| TCGTACTGTCTGAGTCCAGG+TGG | 0.727253 | 4.4:-4538605 | None:intergenic |
| ACTCACCCAGAAGTACGAGG+AGG | 0.791351 | 4.4:+4538676 | MS.gene20212:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGATATTAATTTAACTTCAA+CGG | - | chr4.4:4539730-4539749 | None:intergenic | 20.0% |
| ! | AAAAAATAGAGAACAATGGA+AGG | - | chr4.4:4539264-4539283 | None:intergenic | 25.0% |
| ! | AAAAATAGAGAACAATGGAA+GGG | - | chr4.4:4539263-4539282 | None:intergenic | 25.0% |
| ! | ATCAATGCAATAACTTTAAG+CGG | - | chr4.4:4539559-4539578 | None:intergenic | 25.0% |
| ! | CACTTAGTTTATCATTCAAA+TGG | - | chr4.4:4538735-4538754 | None:intergenic | 25.0% |
| ! | GATTGCAATTCTAACAAATA+TGG | - | chr4.4:4538834-4538853 | None:intergenic | 25.0% |
| ! | TATATCATCTAAACGAAGTT+TGG | - | chr4.4:4539584-4539603 | None:intergenic | 25.0% |
| ! | TCAAAAATTGTATTGGATCA+GGG | - | chr4.4:4539181-4539200 | None:intergenic | 25.0% |
| ! | TTATTCCAATGAGAAAAGAA+TGG | - | chr4.4:4539837-4539856 | None:intergenic | 25.0% |
| ! | TTCAAAACAAACACTTTACA+CGG | + | chr4.4:4538943-4538962 | MS.gene20212:intron | 25.0% |
| !!! | AAGTGTTTGTTTTGAAAGAA+TGG | - | chr4.4:4538939-4538958 | None:intergenic | 25.0% |
| AAAATAGAGAACAATGGAAG+GGG | - | chr4.4:4539262-4539281 | None:intergenic | 30.0% | |
| AGAAAAGAAGAAGATGAAAG+TGG | - | chr4.4:4538380-4538399 | None:intergenic | 30.0% | |
| AGTTAGAGTCAAATCAAACT+TGG | - | chr4.4:4539751-4539770 | None:intergenic | 30.0% | |
| ATGATAAACTAAGTGCTCTA+TGG | + | chr4.4:4538740-4538759 | MS.gene20212:intron | 30.0% | |
| CAAGCTTCAAAATCAGAAAA+AGG | + | chr4.4:4540097-4540116 | MS.gene20212:CDS | 30.0% | |
| CTCAAAAATTGTATTGGATC+AGG | - | chr4.4:4539182-4539201 | None:intergenic | 30.0% | |
| GTGGAAAAAATAGAGAACAA+TGG | - | chr4.4:4539268-4539287 | None:intergenic | 30.0% | |
| GTTCACAATTGTGATTCTTA+AGG | + | chr4.4:4539682-4539701 | MS.gene20212:intron | 30.0% | |
| TGGAATTGAATTGAGTAAAG+AGG | - | chr4.4:4538360-4538379 | None:intergenic | 30.0% | |
| TGGGAACTCAAAAATTGTAT+TGG | - | chr4.4:4539188-4539207 | None:intergenic | 30.0% | |
| ! | ATTTTGTTCTACGAGACTTA+TGG | + | chr4.4:4539514-4539533 | MS.gene20212:intron | 30.0% |
| ! | CTATACCATTCTTTTCTCAT+TGG | + | chr4.4:4539829-4539848 | MS.gene20212:intron | 30.0% |
| ! | TATGTAGAGGTTTTTAACAG+AGG | + | chr4.4:4539913-4539932 | MS.gene20212:CDS | 30.0% |
| !! | ACGAAACTATGGTTGTTTTA+AGG | + | chr4.4:4538624-4538643 | MS.gene20212:CDS | 30.0% |
| !! | GGATTAGCTTAACAAACAAA+AGG | - | chr4.4:4538714-4538733 | None:intergenic | 30.0% |
| !!! | GATGGTTTTGGAAAAAAGAA+AGG | - | chr4.4:4539296-4539315 | None:intergenic | 30.0% |
| !!! | GTTTGTTTTGAAAGAATGGA+GGG | - | chr4.4:4538935-4538954 | None:intergenic | 30.0% |
| !!! | TGATTTTGAAGCTTGTTGAT+CGG | - | chr4.4:4540092-4540111 | None:intergenic | 30.0% |
| !!! | TGTTTGTTTTGAAAGAATGG+AGG | - | chr4.4:4538936-4538955 | None:intergenic | 30.0% |
| ATCCAGAAGAAAAACAAGGA+AGG | + | chr4.4:4539958-4539977 | MS.gene20212:CDS | 35.0% | |
| ATGGGAAATATAGGGGAAAA+TGG | + | chr4.4:4539028-4539047 | MS.gene20212:intron | 35.0% | |
| CTGCACAAAGGAAAATCATT+AGG | - | chr4.4:4539869-4539888 | None:intergenic | 35.0% | |
| TAGCATCCAGAAGAAAAACA+AGG | + | chr4.4:4539954-4539973 | MS.gene20212:CDS | 35.0% | |
| ! | ATTGTATTGGATCAGGGTTT+TGG | - | chr4.4:4539175-4539194 | None:intergenic | 35.0% |
| ! | TCTTTCTTTGAAGGTGGATT+TGG | + | chr4.4:4538512-4538531 | MS.gene20212:CDS | 35.0% |
| ! | TGAAAGTGGGAAATTGATTC+AGG | - | chr4.4:4538440-4538459 | None:intergenic | 35.0% |
| ! | TGATGATGATGATGATGAGT+AGG | + | chr4.4:4538782-4538801 | MS.gene20212:intron | 35.0% |
| ! | TTGTATTGGATCAGGGTTTT+GGG | - | chr4.4:4539174-4539193 | None:intergenic | 35.0% |
| !! | ATTTTGGGGATGGGAAATAT+AGG | + | chr4.4:4539019-4539038 | MS.gene20212:intron | 35.0% |
| !! | TTCTCTGGTTCTTTCTTTGA+AGG | + | chr4.4:4538503-4538522 | MS.gene20212:CDS | 35.0% |
| !! | TTTTGGGGATGGGAAATATA+GGG | + | chr4.4:4539020-4539039 | MS.gene20212:intron | 35.0% |
| !!! | TTTTTGAGTTCCCACAAATG+AGG | + | chr4.4:4539194-4539213 | MS.gene20212:intron | 35.0% |
| AAACTCGCAAACAAAGCCTA+GGG | + | chr4.4:4539332-4539351 | MS.gene20212:intron | 40.0% | |
| ACAAAGCCTAGGGAAAAGAA+TGG | + | chr4.4:4539342-4539361 | MS.gene20212:intron | 40.0% | |
| ACTCAGACAGTACGAAACTA+TGG | + | chr4.4:4538613-4538632 | MS.gene20212:CDS | 40.0% | |
| AGGAGAAACCAACACGTATA+TGG | + | chr4.4:4539978-4539997 | MS.gene20212:CDS | 40.0% | |
| CAAAGCAGAGCAATGACTTA+GGG | - | chr4.4:4538980-4538999 | None:intergenic | 40.0% | |
| CCTTGAGCAAACACTATTGA+CGG | + | chr4.4:4540053-4540072 | MS.gene20212:CDS | 40.0% | |
| CGTCAATAGTGTTTGCTCAA+GGG | - | chr4.4:4540055-4540074 | None:intergenic | 40.0% | |
| GAAACCAACACGTATATGGA+CGG | + | chr4.4:4539982-4540001 | MS.gene20212:CDS | 40.0% | |
| GAACACTGATGCTAACTCTA+GGG | + | chr4.4:4539364-4539383 | MS.gene20212:intron | 40.0% | |
| GATTCAGGAAATGCACGAAA+TGG | - | chr4.4:4538425-4538444 | None:intergenic | 40.0% | |
| GGAAAAAAGAAAGGAGCAAG+TGG | - | chr4.4:4539287-4539306 | None:intergenic | 40.0% | |
| TTCTGGATGCTATATGCTAG+TGG | - | chr4.4:4539946-4539965 | None:intergenic | 40.0% | |
| TTTCCCACTTTCACCAAAAC+AGG | + | chr4.4:4538447-4538466 | MS.gene20212:CDS | 40.0% | |
| TTTGGGGATGGGAAATATAG+GGG | + | chr4.4:4539021-4539040 | MS.gene20212:intron | 40.0% | |
| ! | AGTGTTCCATTCTTTTCCCT+AGG | - | chr4.4:4539351-4539370 | None:intergenic | 40.0% |
| ! | CGGAAAAGTTGTTCCTGTTT+TGG | - | chr4.4:4538463-4538482 | None:intergenic | 40.0% |
| ! | CTTTGAAGGTGGATTTGGTT+CGG | + | chr4.4:4538517-4538536 | MS.gene20212:CDS | 40.0% |
| ! | TTTGAAGGTGGATTTGGTTC+GGG | + | chr4.4:4538518-4538537 | MS.gene20212:CDS | 40.0% |
| !! | TCTGGTTCTTTCTTTGAAGG+TGG | + | chr4.4:4538506-4538525 | MS.gene20212:CDS | 40.0% |
| !!! | CTCCTTCCTTGTTTTTCTTC+TGG | - | chr4.4:4539963-4539982 | None:intergenic | 40.0% |
| !!! | GTTCCTGTTTTGGTGAAAGT+GGG | - | chr4.4:4538453-4538472 | None:intergenic | 40.0% |
| !!! | TGTTCCTGTTTTGGTGAAAG+TGG | - | chr4.4:4538454-4538473 | None:intergenic | 40.0% |
| AAGTCATTGCTCTGCTTTGG+AGG | + | chr4.4:4538981-4539000 | MS.gene20212:intron | 45.0% | |
| ACAAAGCCCTCCTCATTTGT+GGG | - | chr4.4:4539207-4539226 | None:intergenic | 45.0% | |
| AGAAAGAACCAGAGAAGCCT+AGG | - | chr4.4:4538499-4538518 | None:intergenic | 45.0% | |
| AGCAACAAGAAGCTGCACAA+AGG | - | chr4.4:4539881-4539900 | None:intergenic | 45.0% | |
| ATAGAGAACAATGGAAGGGG+AGG | - | chr4.4:4539259-4539278 | None:intergenic | 45.0% | |
| ATTTGACCTCCTCGTACTTC+TGG | - | chr4.4:4538685-4538704 | None:intergenic | 45.0% | |
| CAAACTCGCAAACAAAGCCT+AGG | + | chr4.4:4539331-4539350 | MS.gene20212:intron | 45.0% | |
| CAATAGTGTTTGCTCAAGGG+CGG | - | chr4.4:4540052-4540071 | None:intergenic | 45.0% | |
| CCAAAGCAGAGCAATGACTT+AGG | - | chr4.4:4538981-4539000 | None:intergenic | 45.0% | |
| CCGTCAATAGTGTTTGCTCA+AGG | - | chr4.4:4540056-4540075 | None:intergenic | 45.0% | |
| CCTAAGTCATTGCTCTGCTT+TGG | + | chr4.4:4538978-4538997 | MS.gene20212:intron | 45.0% | |
| CGAAATGGAGAAGATGACTG+AGG | - | chr4.4:4538410-4538429 | None:intergenic | 45.0% | |
| GAAAGAACCAGAGAAGCCTA+GGG | - | chr4.4:4538498-4538517 | None:intergenic | 45.0% | |
| GCCTAGGGTTTCTGCTTTAA+CGG | - | chr4.4:4538483-4538502 | None:intergenic | 45.0% | |
| GCTTCGTGAAGTAGGTGAAT+AGG | - | chr4.4:4540017-4540036 | None:intergenic | 45.0% | |
| GGAACACTGATGCTAACTCT+AGG | + | chr4.4:4539363-4539382 | MS.gene20212:intron | 45.0% | |
| TACAAAGCCCTCCTCATTTG+TGG | - | chr4.4:4539208-4539227 | None:intergenic | 45.0% | |
| TAGAGAACAATGGAAGGGGA+GGG | - | chr4.4:4539258-4539277 | None:intergenic | 45.0% | |
| TCCGTTAAAGCAGAAACCCT+AGG | + | chr4.4:4538479-4538498 | MS.gene20212:CDS | 45.0% | |
| TCGTGAAGTAGGTGAATAGG+AGG | - | chr4.4:4540014-4540033 | None:intergenic | 45.0% | |
| TGAAAGAATGGAGGGAGACA+AGG | - | chr4.4:4538927-4538946 | None:intergenic | 45.0% | |
| TGAGTTCCCACAAATGAGGA+GGG | + | chr4.4:4539198-4539217 | MS.gene20212:intron | 45.0% | |
| TTGAGTTCCCACAAATGAGG+AGG | + | chr4.4:4539197-4539216 | MS.gene20212:intron | 45.0% | |
| TTTGACCTCCTCGTACTTCT+GGG | - | chr4.4:4538684-4538703 | None:intergenic | 45.0% | |
| TTTGTGCAGCTTCTTGTTGC+TGG | + | chr4.4:4539880-4539899 | MS.gene20212:intron | 45.0% | |
| ! | AGTCATTGCTCTGCTTTGGA+GGG | + | chr4.4:4538982-4539001 | MS.gene20212:intron | 45.0% |
| ! | TTTAAGGCCTGACATGTCTG+AGG | + | chr4.4:4538640-4538659 | MS.gene20212:CDS | 45.0% |
| !! | CTAGGCTTTGTTTGCGAGTT+TGG | - | chr4.4:4539333-4539352 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | - | chr4.4:4539329-4539348 | None:intergenic | 45.0% |
| !!! | ATCAGGGTTTTGGGAGGTTT+TGG | - | chr4.4:4539165-4539184 | None:intergenic | 45.0% |
| !!! | TATTGGATCAGGGTTTTGGG+AGG | - | chr4.4:4539171-4539190 | None:intergenic | 45.0% |
| AATGGAAGGGGAGGGATTTG+GGG | - | chr4.4:4539250-4539269 | None:intergenic | 50.0% | |
| ACAATGGAAGGGGAGGGATT+TGG | - | chr4.4:4539252-4539271 | None:intergenic | 50.0% | |
| CAATGGAAGGGGAGGGATTT+GGG | - | chr4.4:4539251-4539270 | None:intergenic | 50.0% | |
| CGAGTTTGGAGGGAAAGAGA+GGG | - | chr4.4:4539319-4539338 | None:intergenic | 50.0% | |
| GAGTTTGGAGGGAAAGAGAG+GGG | - | chr4.4:4539318-4539337 | None:intergenic | 50.0% | |
| GATGCCGTCCATATACGTGT+TGG | - | chr4.4:4539989-4540008 | None:intergenic | 50.0% | |
| GTTTCGTACTGTCTGAGTCC+AGG | - | chr4.4:4538611-4538630 | None:intergenic | 50.0% | |
| TGGAGGTGGCATGTATGTAG+AGG | + | chr4.4:4539900-4539919 | MS.gene20212:CDS | 50.0% | |
| TGTTTGCTCAAGGGCGGTTA+TGG | - | chr4.4:4540046-4540065 | None:intergenic | 50.0% | |
| ! | GGAAAGAGAGGGGATGGTTT+TGG | - | chr4.4:4539308-4539327 | None:intergenic | 50.0% |
| !! | ATTTGGTTCGGGTGATGACC+CGG | + | chr4.4:4538529-4538548 | MS.gene20212:CDS | 50.0% |
| !! | GAAGGGAGGATTTTGGGGAT+GGG | + | chr4.4:4539010-4539029 | MS.gene20212:intron | 50.0% |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | - | chr4.4:4539330-4539349 | None:intergenic | 50.0% |
| !! | GTCATTGCTCTGCTTTGGAG+GGG | + | chr4.4:4538983-4539002 | MS.gene20212:intron | 50.0% |
| !!! | AGGGTTTTGGGAGGTTTTGG+AGG | - | chr4.4:4539162-4539181 | None:intergenic | 50.0% |
| !!! | GGGTTTTGGGAGGTTTTGGA+GGG | - | chr4.4:4539161-4539180 | None:intergenic | 50.0% |
| ATGGAAGGGGAGGGATTTGG+GGG | - | chr4.4:4539249-4539268 | None:intergenic | 55.0% | |
| CAGCTTCTTGTTGCTGGAGG+TGG | + | chr4.4:4539886-4539905 | MS.gene20212:intron | 55.0% | |
| CGCTCATCCTCAGACATGTC+AGG | - | chr4.4:4538650-4538669 | None:intergenic | 55.0% | |
| CTCTTCCACAGCAGTGAACC+CGG | - | chr4.4:4538567-4538586 | None:intergenic | 55.0% | |
| CTGAGTCCAGGTGGACATTG+CGG | - | chr4.4:4538599-4538618 | None:intergenic | 55.0% | |
| GAAGAACCGCAATGTCCACC+TGG | + | chr4.4:4538590-4538609 | MS.gene20212:CDS | 55.0% | |
| GCAGAAACCCTAGGCTTCTC+TGG | + | chr4.4:4538488-4538507 | MS.gene20212:CDS | 55.0% | |
| GCGAGTTTGGAGGGAAAGAG+AGG | - | chr4.4:4539320-4539339 | None:intergenic | 55.0% | |
| GGACTCAGGCTTCGTGAAGT+AGG | - | chr4.4:4540025-4540044 | None:intergenic | 55.0% | |
| GTGCAGCTTCTTGTTGCTGG+AGG | + | chr4.4:4539883-4539902 | MS.gene20212:intron | 55.0% | |
| TCAAGGGCGGTTATGGACTC+AGG | - | chr4.4:4540039-4540058 | None:intergenic | 55.0% | |
| TCGTACTGTCTGAGTCCAGG+TGG | - | chr4.4:4538608-4538627 | None:intergenic | 55.0% | |
| TTGGAGGGAAAGAGAGGGGA+TGG | - | chr4.4:4539314-4539333 | None:intergenic | 55.0% | |
| ! | ACTCACCCAGAAGTACGAGG+AGG | + | chr4.4:4538676-4538695 | MS.gene20212:CDS | 55.0% |
| ! | GAGGGGAAGGGAGGATTTTG+GGG | + | chr4.4:4539005-4539024 | MS.gene20212:intron | 55.0% |
| ! | GGAGGGGAAGGGAGGATTTT+GGG | + | chr4.4:4539004-4539023 | MS.gene20212:intron | 55.0% |
| ! | TGCACTCACCCAGAAGTACG+AGG | + | chr4.4:4538673-4538692 | MS.gene20212:CDS | 55.0% |
| !! | ATTGCTCTGCTTTGGAGGGG+AGG | + | chr4.4:4538986-4539005 | MS.gene20212:intron | 55.0% |
| !! | GGAAGGGAGGATTTTGGGGA+TGG | + | chr4.4:4539009-4539028 | MS.gene20212:intron | 55.0% |
| !! | TTGCTCTGCTTTGGAGGGGA+GGG | + | chr4.4:4538987-4539006 | MS.gene20212:intron | 55.0% |
| AACCCGGTTCCGGGAGTAAC+CGG | - | chr4.4:4538551-4538570 | None:intergenic | 60.0% | |
| ACAGCAGTGAACCCGGTTCC+GGG | - | chr4.4:4538560-4538579 | None:intergenic | 60.0% | |
| CACAGCAGTGAACCCGGTTC+CGG | - | chr4.4:4538561-4538580 | None:intergenic | 60.0% | |
| GGTGATGACCCGGTTACTCC+CGG | + | chr4.4:4538539-4538558 | MS.gene20212:CDS | 60.0% | |
| TGGAAGGGGAGGGATTTGGG+GGG | - | chr4.4:4539248-4539267 | None:intergenic | 60.0% | |
| ! | GGGAGGGGAAGGGAGGATTT+TGG | + | chr4.4:4539003-4539022 | MS.gene20212:intron | 60.0% |
| !! | TGCTCTGCTTTGGAGGGGAG+GGG | + | chr4.4:4538988-4539007 | MS.gene20212:intron | 60.0% |
| !! | TGCTTTGGAGGGGAGGGGAA+GGG | + | chr4.4:4538993-4539012 | MS.gene20212:intron | 60.0% |
| ACCCGGTTACTCCCGGAACC+GGG | + | chr4.4:4538546-4538565 | MS.gene20212:CDS | 65.0% | |
| ACCCGGTTCCGGGAGTAACC+GGG | - | chr4.4:4538550-4538569 | None:intergenic | 65.0% | |
| CGGAACCGGGTTCACTGCTG+TGG | + | chr4.4:4538559-4538578 | MS.gene20212:CDS | 65.0% | |
| GACCCGGTTACTCCCGGAAC+CGG | + | chr4.4:4538545-4538564 | MS.gene20212:CDS | 65.0% | |
| TTTGGAGGGGAGGGGAAGGG+AGG | + | chr4.4:4538996-4539015 | MS.gene20212:intron | 65.0% | |
| !! | CTGCTTTGGAGGGGAGGGGA+AGG | + | chr4.4:4538992-4539011 | MS.gene20212:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4538350 | 4540128 | 4538350 | ID=MS.gene20212 |
| chr4.4 | mRNA | 4538350 | 4540128 | 4538350 | ID=MS.gene20212.t1;Parent=MS.gene20212 |
| chr4.4 | exon | 4538350 | 4538697 | 4538350 | ID=MS.gene20212.t1.exon1;Parent=MS.gene20212.t1 |
| chr4.4 | CDS | 4538350 | 4538697 | 4538350 | ID=cds.MS.gene20212.t1;Parent=MS.gene20212.t1 |
| chr4.4 | exon | 4539889 | 4540128 | 4539889 | ID=MS.gene20212.t1.exon2;Parent=MS.gene20212.t1 |
| chr4.4 | CDS | 4539889 | 4540128 | 4539889 | ID=cds.MS.gene20212.t1;Parent=MS.gene20212.t1 |
| Gene Sequence |
| Protein sequence |
