AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055647


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055647.t1 MTR_1g105090 98.502 267 4 0 1 267 1 267 0.0 536
MS.gene055647.t1 MTR_7g105830 86.454 251 24 3 23 267 19 265 1.58e-149 418
MS.gene055647.t1 MTR_4g094720 31.111 180 114 3 76 250 6 180 1.92e-22 92.4
MS.gene055647.t1 MTR_4g124790 32.867 143 87 3 90 231 87 221 1.52e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055647.t1 AT5G06290 88.679 212 23 1 57 267 62 273 3.38e-140 395
MS.gene055647.t1 AT3G11630 91.176 204 17 1 65 267 63 266 2.63e-139 392
MS.gene055647.t1 AT5G06290 86.441 177 23 1 57 232 62 238 3.02e-110 318
MS.gene055647.t1 AT1G48130 30.682 176 117 2 76 250 6 177 7.63e-24 96.3
MS.gene055647.t1 AT3G26060 34.194 155 90 4 77 230 10 153 2.07e-16 74.7
MS.gene055647.t1 AT3G26060 33.758 157 88 5 77 230 72 215 4.12e-16 75.5
MS.gene055647.t1 AT3G26060 33.758 157 88 5 77 230 73 216 4.36e-16 75.5

Find 74 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAATAAATACCGAGATTT+TGG 0.099943 1.4:-48400530 MS.gene055647:CDS
AATGGTTTAGGAAGAGAATT+AGG 0.120754 1.4:+48401954 None:intergenic
AGTAGAAGAAGAGGGTAATT+TGG 0.123336 1.4:+48401986 None:intergenic
GAGAGAAAAGTGAGGATTTA+GGG 0.212388 1.4:+48402009 None:intergenic
GGAGAGAAAAGTGAGGATTT+AGG 0.216968 1.4:+48402008 None:intergenic
AAGTAATCTTTGCTAAGTTT+TGG 0.270982 1.4:+48399006 None:intergenic
TTCACCTTTGTTTGCCCAAC+AGG 0.278982 1.4:-48400672 MS.gene055647:intron
GTAGAAGAAGAGGGTAATTT+GGG 0.293541 1.4:+48401987 None:intergenic
CCAGCTGGGCAAACTTCATC+TGG 0.306036 1.4:+48399063 None:intergenic
TCCCCAGGCTTCCATCCAGC+TGG 0.323033 1.4:+48399048 None:intergenic
GAAGGGAGAGAGAATGGTTT+AGG 0.342977 1.4:+48401942 None:intergenic
GGTTTCATGGACTTCTCCCC+AGG 0.362041 1.4:+48399033 None:intergenic
CGAGAAGAATGTTGAAGATT+GGG 0.366993 1.4:+48401903 None:intergenic
ACCATCAACAACTTGGGAAT+TGG 0.377059 1.4:-48399282 MS.gene055647:CDS
TGCCCAGCTGGATGGAAGCC+TGG 0.378218 1.4:-48399051 MS.gene055647:CDS
ACCAATTCCCAAGTTGTTGA+TGG 0.378833 1.4:+48399281 None:intergenic
ACAGCCTCTGCTTCAAAATC+AGG 0.381358 1.4:+48400918 None:intergenic
TGGTGTTCTCATTCCTGATC+AGG 0.383066 1.4:-48399765 MS.gene055647:intron
AAATCCATATCAAAATCTTA+TGG 0.385045 1.4:-48399785 MS.gene055647:CDS
CCAGATGAAGTTTGCCCAGC+TGG 0.388822 1.4:-48399063 MS.gene055647:CDS
GCCCAGCTGGATGGAAGCCT+GGG 0.390182 1.4:-48399050 MS.gene055647:CDS
TGCAGTTCTCGCATCTTGCA+TGG 0.415230 1.4:-48399874 MS.gene055647:intron
GAAAGTGAAGGGAGAGAGAA+TGG 0.422789 1.4:+48401936 None:intergenic
ATGGTTTAGGAAGAGAATTA+GGG 0.424590 1.4:+48401955 None:intergenic
GCGAGAAGAATGTTGAAGAT+TGG 0.425870 1.4:+48401902 None:intergenic
TGGTGACTTGAATTATCCTC+TGG 0.440023 1.4:-48399822 MS.gene055647:CDS
ACCTGACTAACCAACCTGTT+GGG 0.441801 1.4:+48400658 None:intergenic
GATAGAAAGTCAGGTGGCCT+TGG 0.444253 1.4:-48399842 MS.gene055647:CDS
ATGTTAGGACATACCTGATC+AGG 0.457169 1.4:+48399752 None:intergenic
TGACCGACATGCAGAGTTTG+AGG 0.464552 1.4:-48400551 MS.gene055647:CDS
GCACTCTACCATCAACAACT+TGG 0.474230 1.4:-48399289 MS.gene055647:CDS
GATGGAGAGAGTAGAAGAAG+AGG 0.477129 1.4:+48401977 None:intergenic
CCCCAGGCTTCCATCCAGCT+GGG 0.477973 1.4:+48399049 None:intergenic
TCAAACTCTCTGACTACATT+GGG 0.480605 1.4:-48400731 MS.gene055647:CDS
CAGAGTGAGCTTCCATTGGT+TGG 0.486493 1.4:-48400951 MS.gene055647:CDS
TGAGAAGAGAGAAGAAGCAG+AGG 0.489447 1.4:+48402040 None:intergenic
TGTTCATTATTGACAAGGAA+GGG 0.497591 1.4:-48399320 MS.gene055647:CDS
GTTCAAACAGATAGAAAGTC+AGG 0.499615 1.4:-48399851 MS.gene055647:CDS
GCAGTTCTCGCATCTTGCAT+GGG 0.501742 1.4:-48399873 MS.gene055647:intron
CACTGAAACACCCAAAATCT+CGG 0.516581 1.4:+48400519 None:intergenic
CTCACAGAGTGAGCTTCCAT+TGG 0.519825 1.4:-48400955 MS.gene055647:intron
CTTTAACAAGGAAGCTACTA+CGG 0.520554 1.4:+48401880 None:intergenic
GCAGGCCTTGCAGTATGTGC+AGG 0.522197 1.4:-48399091 MS.gene055647:intron
ATGGAGAGAGTAGAAGAAGA+GGG 0.526901 1.4:+48401978 None:intergenic
GGCGAGTGAAGGAAAGTGAA+GGG 0.527862 1.4:+48401925 None:intergenic
TTGAAGATTGGGGCGAGTGA+AGG 0.529886 1.4:+48401914 None:intergenic
TTGTTCATTATTGACAAGGA+AGG 0.531673 1.4:-48399321 MS.gene055647:CDS
ATGAAGTTTGCCCAGCTGGA+TGG 0.536203 1.4:-48399059 MS.gene055647:CDS
GGGCGAGTGAAGGAAAGTGA+AGG 0.544606 1.4:+48401924 None:intergenic
CACTCTACCATCAACAACTT+GGG 0.546323 1.4:-48399288 MS.gene055647:CDS
TTTAGGAAGAGAATTAGGGA+TGG 0.552710 1.4:+48401959 None:intergenic
GTTCATTATTGACAAGGAAG+GGG 0.557158 1.4:-48399319 MS.gene055647:CDS
GGTGCTGCATTTCCAACCAA+TGG 0.558663 1.4:+48400939 None:intergenic
TGATATGGATTTGGTGACAT+CGG 0.562898 1.4:+48399796 None:intergenic
GTCAAACTCTCTGACTACAT+TGG 0.566908 1.4:-48400732 MS.gene055647:CDS
CAAACAAAGGTGAAGTCCAA+TGG 0.569509 1.4:+48400681 None:intergenic
TTGCAGGGAATTGCATTGAG+AGG 0.579406 1.4:-48399345 MS.gene055647:intron
GTTCTCCTGCACATACTGCA+AGG 0.582090 1.4:+48399086 None:intergenic
CAGCTGGGCAAACTTCATCT+GGG 0.584092 1.4:+48399064 None:intergenic
TGCATGTCGGTCACTGAAAG+CGG 0.585727 1.4:+48400561 None:intergenic
GAGAAGAATGTTGAAGATTG+GGG 0.624972 1.4:+48401904 None:intergenic
TGCTTACAGAGGCTTTAACA+AGG 0.625945 1.4:+48401868 None:intergenic
TGAGACAAAGAGAACACTGC+AGG 0.626276 1.4:-48399247 MS.gene055647:intron
CCAACCTGTTGGGCAAACAA+AGG 0.627442 1.4:+48400668 None:intergenic
TTGCCTCAAACTCTGCATGT+CGG 0.627947 1.4:+48400548 None:intergenic
CCCAGCTGGATGGAAGCCTG+GGG 0.636205 1.4:-48399049 MS.gene055647:CDS
AGGATTGTTCATTATTGACA+AGG 0.639152 1.4:-48399325 MS.gene055647:CDS
TAGCAAAGATTACTTTGCCG+CGG 0.651716 1.4:-48398998 MS.gene055647:CDS
TAATTTGGGAGAGAAAAGTG+AGG 0.670898 1.4:+48402001 None:intergenic
GGGTGTTTCAGTGGACAGTG+TGG 0.684461 1.4:-48400509 MS.gene055647:intron
GAGGATAATTCAAGTCACCA+AGG 0.702983 1.4:+48399825 None:intergenic
CAAACAGATAGAAAGTCAGG+TGG 0.730426 1.4:-48399848 MS.gene055647:CDS
CTGTCATTCACGTTACACCG+CGG 0.745413 1.4:+48398981 None:intergenic
TTGGTGACATCGGAAACCAG+AGG 0.770621 1.4:+48399806 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCAAAAAAAAAAATTG+GGG + chr1.4:48399217-48399236 None:intergenic 10.0%
!! ATCTTTAATCACTAAATATT+AGG - chr1.4:48399654-48399673 MS.gene055647:intron 15.0%
!! ATTGAACATTAATTGATTAT+TGG - chr1.4:48399305-48399324 MS.gene055647:CDS 15.0%
!! ATTTCAAAAAAAAAAATTGG+GGG + chr1.4:48399216-48399235 None:intergenic 15.0%
!! TCTTTAATCACTAAATATTA+GGG - chr1.4:48399655-48399674 MS.gene055647:intron 15.0%
!! TTGAACATTAATTGATTATT+GGG - chr1.4:48399306-48399325 MS.gene055647:CDS 15.0%
!! AAAATAGTGTAACTTATGTA+TGG - chr1.4:48401329-48401348 MS.gene055647:intron 20.0%
!! AAATAAATCCTTAAACGATA+TGG + chr1.4:48400746-48400765 None:intergenic 20.0%
!! AAATCCATATCAAAATCTTA+TGG - chr1.4:48401270-48401289 MS.gene055647:intron 20.0%
!! AAGTATAGTCTTTAAATTTC+TGG - chr1.4:48400071-48400090 MS.gene055647:intron 20.0%
!!! AGTTTTTATTCGACTTTTTA+AGG - chr1.4:48401503-48401522 MS.gene055647:intron 20.0%
!!! ATAAACTAGTTCTTACTATA+AGG - chr1.4:48400773-48400792 MS.gene055647:intron 20.0%
!!! ATAAGATTTTGATATGGATT+TGG + chr1.4:48401271-48401290 None:intergenic 20.0%
!!! ATATGAATACTGATTCTTAA+TGG - chr1.4:48400206-48400225 MS.gene055647:intron 20.0%
!!! GTTTTTGCATTTTTATTATG+TGG - chr1.4:48400236-48400255 MS.gene055647:intron 20.0%
!!! TATAATTCATGCTTGTTTTT+GGG - chr1.4:48399459-48399478 MS.gene055647:intron 20.0%
!!! TTACACTATTTTCATATGTT+AGG + chr1.4:48401321-48401340 None:intergenic 20.0%
!!! TTATAATTCATGCTTGTTTT+TGG - chr1.4:48399458-48399477 MS.gene055647:intron 20.0%
! AGGTGATTATACAACTAATT+AGG - chr1.4:48401828-48401847 MS.gene055647:intron 25.0%
! ATAAAAAAAGAAACAGATGC+TGG + chr1.4:48401138-48401157 None:intergenic 25.0%
! GGGAATTTCTTCATAAATAA+AGG - chr1.4:48400866-48400885 MS.gene055647:intron 25.0%
! TAAAGATTCCATATCGTTTA+AGG - chr1.4:48400735-48400754 MS.gene055647:CDS 25.0%
! TAGAATGCTTTAATGCATTT+GGG - chr1.4:48399940-48399959 MS.gene055647:intron 25.0%
! TGAATAAGAATATTGTCAGA+GGG - chr1.4:48400846-48400865 MS.gene055647:intron 25.0%
! TGATAATTAGATATGCTAGT+TGG - chr1.4:48399334-48399353 MS.gene055647:CDS 25.0%
! TTGAATAAGAATATTGTCAG+AGG - chr1.4:48400845-48400864 MS.gene055647:intron 25.0%
!! AAGTAATCTTTGCTAAGTTT+TGG + chr1.4:48402052-48402071 None:intergenic 25.0%
!! AGTAATCTTTGCTAAGTTTT+GGG + chr1.4:48402051-48402070 None:intergenic 25.0%
!!! AACACCATAAGATTTTGATA+TGG + chr1.4:48401277-48401296 None:intergenic 25.0%
!!! ACTTTTTAAGGAATTGAACT+AGG - chr1.4:48401515-48401534 MS.gene055647:intron 25.0%
!!! CTCATATTTCAATGTTGTTT+TGG - chr1.4:48401573-48401592 MS.gene055647:intron 25.0%
!!! TATTTTTGAGTAATTGCTGT+TGG - chr1.4:48400260-48400279 MS.gene055647:intron 25.0%
AACTCAGAAAATTCTGCAAA+TGG + chr1.4:48401457-48401476 None:intergenic 30.0%
AAGCTATCTTGGAGATATTA+TGG + chr1.4:48399802-48399821 None:intergenic 30.0%
AATCAACTGCAAAGGATTAT+AGG - chr1.4:48400706-48400725 MS.gene055647:CDS 30.0%
AATGGTTTAGGAAGAGAATT+AGG + chr1.4:48399104-48399123 None:intergenic 30.0%
ACATTGAAATATGAGCGTAA+AGG + chr1.4:48401568-48401587 None:intergenic 30.0%
ACTCAGAAAATTCTGCAAAT+GGG + chr1.4:48401456-48401475 None:intergenic 30.0%
AGGATTGTTCATTATTGACA+AGG - chr1.4:48401730-48401749 MS.gene055647:intron 30.0%
ATCAACTGCAAAGGATTATA+GGG - chr1.4:48400707-48400726 MS.gene055647:CDS 30.0%
ATCAGTATTCATATTCGCTT+TGG + chr1.4:48400200-48400219 None:intergenic 30.0%
ATGGTTTAGGAAGAGAATTA+GGG + chr1.4:48399103-48399122 None:intergenic 30.0%
ATGTGGTATAACCTATGTAA+CGG - chr1.4:48401107-48401126 MS.gene055647:intron 30.0%
CATTGCTTAATAGCATTAAC+CGG - chr1.4:48401607-48401626 MS.gene055647:intron 30.0%
CTAGAATGCTTTAATGCATT+TGG - chr1.4:48399939-48399958 MS.gene055647:intron 30.0%
CTTGGAGATATTATGGAATT+TGG + chr1.4:48399795-48399814 None:intergenic 30.0%
GAAAAATGAATCAACTGCAA+AGG - chr1.4:48400698-48400717 MS.gene055647:CDS 30.0%
GATACAACAGAAAATCTAGA+CGG + chr1.4:48401383-48401402 None:intergenic 30.0%
GATATTGTTCAATCTTGATG+TGG + chr1.4:48401855-48401874 None:intergenic 30.0%
TAAAAATTCCCAATGTTGCA+GGG - chr1.4:48401695-48401714 MS.gene055647:intron 30.0%
TCTTTATGCTCTTATGTATG+TGG - chr1.4:48401090-48401109 MS.gene055647:intron 30.0%
TGTTCATTATTGACAAGGAA+GGG - chr1.4:48401735-48401754 MS.gene055647:intron 30.0%
TTGTTCATTATTGACAAGGA+AGG - chr1.4:48401734-48401753 MS.gene055647:intron 30.0%
! GCAATAAATACCGAGATTTT+GGG - chr1.4:48400526-48400545 MS.gene055647:CDS 30.0%
! TATCCTCTTTTTCTATCCAT+TGG - chr1.4:48400358-48400377 MS.gene055647:intron 30.0%
! TTTTGATCAGGAGTTTATCA+AGG - chr1.4:48400160-48400179 MS.gene055647:intron 30.0%
!!! TTCTAGTTCATGTGCATTTT+CGG - chr1.4:48399624-48399643 MS.gene055647:intron 30.0%
AAGTAGCACACATTATCGTT+AGG + chr1.4:48400460-48400479 None:intergenic 35.0%
ACACATACCCTTGAAAAACA+AGG - chr1.4:48401042-48401061 MS.gene055647:intron 35.0%
AGTAGAAGAAGAGGGTAATT+TGG + chr1.4:48399072-48399091 None:intergenic 35.0%
AGTCCAATGGATAGAAAAAG+AGG + chr1.4:48400364-48400383 None:intergenic 35.0%
ATGACACAAGTCCAAAATAG+TGG + chr1.4:48401667-48401686 None:intergenic 35.0%
ATTGACACACAACGTTAACT+AGG + chr1.4:48400611-48400630 None:intergenic 35.0%
CAGTCTTTACATAGACTACA+AGG - chr1.4:48400996-48401015 MS.gene055647:intron 35.0%
CGAGAAGAATGTTGAAGATT+GGG + chr1.4:48399155-48399174 None:intergenic 35.0%
CTAAAAATTCCCAATGTTGC+AGG - chr1.4:48401694-48401713 MS.gene055647:intron 35.0%
CTTGCTTTCATAAGCTATCT+TGG + chr1.4:48399813-48399832 None:intergenic 35.0%
CTTTAACAAGGAAGCTACTA+CGG + chr1.4:48399178-48399197 None:intergenic 35.0%
GACTAAATCATTGTCATTCC+AGG - chr1.4:48400301-48400320 MS.gene055647:intron 35.0%
GAGAAGAATGTTGAAGATTG+GGG + chr1.4:48399154-48399173 None:intergenic 35.0%
GAGAGAAAAGTGAGGATTTA+GGG + chr1.4:48399049-48399068 None:intergenic 35.0%
GTAGAAGAAGAGGGTAATTT+GGG + chr1.4:48399071-48399090 None:intergenic 35.0%
GTAGTCTATGTAAAGACTGT+GGG + chr1.4:48400995-48401014 None:intergenic 35.0%
GTATTCATATTCGCTTTGGT+TGG + chr1.4:48400196-48400215 None:intergenic 35.0%
GTTCAAACAGATAGAAAGTC+AGG - chr1.4:48401204-48401223 MS.gene055647:intron 35.0%
GTTCATTATTGACAAGGAAG+GGG - chr1.4:48401736-48401755 MS.gene055647:intron 35.0%
TAATTTGGGAGAGAAAAGTG+AGG + chr1.4:48399057-48399076 None:intergenic 35.0%
TAGCATTTGTCAGTCTGTTT+GGG - chr1.4:48399550-48399569 MS.gene055647:intron 35.0%
TCAAACTCTCTGACTACATT+GGG - chr1.4:48400324-48400343 MS.gene055647:intron 35.0%
TCTCAAAAACGCAAATGAAC+TGG + chr1.4:48400020-48400039 None:intergenic 35.0%
TGTAGTCTATGTAAAGACTG+TGG + chr1.4:48400996-48401015 None:intergenic 35.0%
TTAGCATTTGTCAGTCTGTT+TGG - chr1.4:48399549-48399568 MS.gene055647:intron 35.0%
TTGTTGTCTTGGTATCTGAT+AGG - chr1.4:48401066-48401085 MS.gene055647:intron 35.0%
TTTAGGAAGAGAATTAGGGA+TGG + chr1.4:48399099-48399118 None:intergenic 35.0%
! ACAAGTCCAAAATAGTGGAA+TGG + chr1.4:48401662-48401681 None:intergenic 35.0%
! CAAACTGTTTTCTAGACAGA+CGG + chr1.4:48399872-48399891 None:intergenic 35.0%
! CTGCAACATTGGGAATTTTT+AGG + chr1.4:48401696-48401715 None:intergenic 35.0%
! GGCAATAAATACCGAGATTT+TGG - chr1.4:48400525-48400544 MS.gene055647:CDS 35.0%
! TGCATTAAAGCATTCTAGCT+CGG + chr1.4:48399937-48399956 None:intergenic 35.0%
! TGTCTTCCATTCCACTATTT+TGG - chr1.4:48401653-48401672 MS.gene055647:intron 35.0%
! TTTAGATGCCAACTTTTGAC+CGG + chr1.4:48401629-48401648 None:intergenic 35.0%
!! AAAAACAAGGCTTGTTGTCT+TGG - chr1.4:48401055-48401074 MS.gene055647:intron 35.0%
!! TCTAGTTCATGTGCATTTTC+GGG - chr1.4:48399625-48399644 MS.gene055647:intron 35.0%
!! TGATATGGATTTGGTGACAT+CGG + chr1.4:48401262-48401281 None:intergenic 35.0%
!!! ACAACAAGCCTTGTTTTTCA+AGG + chr1.4:48401053-48401072 None:intergenic 35.0%
!!! CAACAAGCCTTGTTTTTCAA+GGG + chr1.4:48401052-48401071 None:intergenic 35.0%
AATGCAATTCCCTGCAACAT+TGG + chr1.4:48401707-48401726 None:intergenic 40.0%
ACCAATTCCCAAGTTGTTGA+TGG + chr1.4:48401777-48401796 None:intergenic 40.0%
ACCATCAACAACTTGGGAAT+TGG - chr1.4:48401773-48401792 MS.gene055647:intron 40.0%
AGCATTAACCGGTCAAAAGT+TGG - chr1.4:48401618-48401637 MS.gene055647:intron 40.0%
AGCATTTGTCAGTCTGTTTG+GGG - chr1.4:48399551-48399570 MS.gene055647:intron 40.0%
ATCTCTCCCTAAACGAACTT+AGG - chr1.4:48401403-48401422 MS.gene055647:intron 40.0%
ATGCAATTCCCTGCAACATT+GGG + chr1.4:48401706-48401725 None:intergenic 40.0%
ATGGAGAGAGTAGAAGAAGA+GGG + chr1.4:48399080-48399099 None:intergenic 40.0%
ATGTTAGGACATACCTGATC+AGG + chr1.4:48401306-48401325 None:intergenic 40.0%
CAAACAAAGGTGAAGTCCAA+TGG + chr1.4:48400377-48400396 None:intergenic 40.0%
CAAACAGATAGAAAGTCAGG+TGG - chr1.4:48401207-48401226 MS.gene055647:intron 40.0%
CACTCTACCATCAACAACTT+GGG - chr1.4:48401767-48401786 MS.gene055647:intron 40.0%
CACTGAAACACCCAAAATCT+CGG + chr1.4:48400539-48400558 None:intergenic 40.0%
CTAACTAATAGACAGACAGC+AGG + chr1.4:48400675-48400694 None:intergenic 40.0%
CTTAGGGTATGCCATATCTA+CGG - chr1.4:48401420-48401439 MS.gene055647:intron 40.0%
GAACTGCACGATAGAAACAA+TGG + chr1.4:48401169-48401188 None:intergenic 40.0%
GAGGATAATTCAAGTCACCA+AGG + chr1.4:48401233-48401252 None:intergenic 40.0%
GCATACCCTAAGTTCGTTTA+GGG + chr1.4:48401412-48401431 None:intergenic 40.0%
GCGAGAAGAATGTTGAAGAT+TGG + chr1.4:48399156-48399175 None:intergenic 40.0%
GGAGAGAAAAGTGAGGATTT+AGG + chr1.4:48399050-48399069 None:intergenic 40.0%
GTCAAACTCTCTGACTACAT+TGG - chr1.4:48400323-48400342 MS.gene055647:intron 40.0%
TAGCAAAGATTACTTTGCCG+CGG - chr1.4:48402057-48402076 MS.gene055647:CDS 40.0%
TATGTAAAGACTGTGGGCAT+TGG + chr1.4:48400989-48401008 None:intergenic 40.0%
TCTCTCCCTAAACGAACTTA+GGG - chr1.4:48401404-48401423 MS.gene055647:intron 40.0%
TGCTGGAATTTCCGTTACAT+AGG + chr1.4:48401121-48401140 None:intergenic 40.0%
TGGTGACTTGAATTATCCTC+TGG - chr1.4:48401233-48401252 MS.gene055647:intron 40.0%
TTAGGGTATGCCATATCTAC+GGG - chr1.4:48401421-48401440 MS.gene055647:intron 40.0%
TTCATATTCGCTTTGGTTGG+TGG + chr1.4:48400193-48400212 None:intergenic 40.0%
TTTGTGAGTGTGTTTGAGAG+AGG - chr1.4:48399721-48399740 MS.gene055647:intron 40.0%
! TGCTTACAGAGGCTTTAACA+AGG + chr1.4:48399190-48399209 None:intergenic 40.0%
!!! AAGTTTTGGGTCTGGTTTCA+TGG + chr1.4:48402038-48402057 None:intergenic 40.0%
!!! TCTTTGCTAAGTTTTGGGTC+TGG + chr1.4:48402046-48402065 None:intergenic 40.0%
ACAGCCTCTGCTTCAAAATC+AGG + chr1.4:48400140-48400159 None:intergenic 45.0%
ACCTGACTAACCAACCTGTT+GGG + chr1.4:48400400-48400419 None:intergenic 45.0%
ATTGGGGGAAATGCTTACAG+AGG + chr1.4:48399201-48399220 None:intergenic 45.0%
ATTGTCCCCTTGATCTGCAT+TGG - chr1.4:48401937-48401956 MS.gene055647:CDS 45.0%
CAAGACCAATGCAGATCAAG+GGG + chr1.4:48401945-48401964 None:intergenic 45.0%
CAGGAGTTTATCAAGGTACG+TGG - chr1.4:48400167-48400186 MS.gene055647:intron 45.0%
CTCGGAGCAAGGACATAATT+TGG + chr1.4:48399919-48399938 None:intergenic 45.0%
GAAAGTGAAGGGAGAGAGAA+TGG + chr1.4:48399122-48399141 None:intergenic 45.0%
GAAGGGAGAGAGAATGGTTT+AGG + chr1.4:48399116-48399135 None:intergenic 45.0%
GAGCGTAAAGGACAAGTGTT+GGG + chr1.4:48401556-48401575 None:intergenic 45.0%
GATGGAGAGAGTAGAAGAAG+AGG + chr1.4:48399081-48399100 None:intergenic 45.0%
GCAAGACCAATGCAGATCAA+GGG + chr1.4:48401946-48401965 None:intergenic 45.0%
GCACTCTACCATCAACAACT+TGG - chr1.4:48401766-48401785 MS.gene055647:intron 45.0%
GCATTTGTCAGTCTGTTTGG+GGG - chr1.4:48399552-48399571 MS.gene055647:intron 45.0%
GGCATACCCTAAGTTCGTTT+AGG + chr1.4:48401413-48401432 None:intergenic 45.0%
TAGGGTATGCCATATCTACG+GGG - chr1.4:48401422-48401441 MS.gene055647:intron 45.0%
TGAGAAGAGAGAAGAAGCAG+AGG + chr1.4:48399018-48399037 None:intergenic 45.0%
TGAGACAAAGAGAACACTGC+AGG - chr1.4:48401808-48401827 MS.gene055647:intron 45.0%
TGAGCGTAAAGGACAAGTGT+TGG + chr1.4:48401557-48401576 None:intergenic 45.0%
TGCAAGACCAATGCAGATCA+AGG + chr1.4:48401947-48401966 None:intergenic 45.0%
TGGTGTTCTCATTCCTGATC+AGG - chr1.4:48401290-48401309 MS.gene055647:intron 45.0%
TGTAGTCAGAGAGTTTGACC+TGG + chr1.4:48400322-48400341 None:intergenic 45.0%
TTGCAGGGAATTGCATTGAG+AGG - chr1.4:48401710-48401729 MS.gene055647:intron 45.0%
TTGCCTCAAACTCTGCATGT+CGG + chr1.4:48400510-48400529 None:intergenic 45.0%
! TTCACCTTTGTTTGCCCAAC+AGG - chr1.4:48400383-48400402 MS.gene055647:intron 45.0%
!! CGAGATTTTGGGTGTTTCAG+TGG - chr1.4:48400537-48400556 MS.gene055647:CDS 45.0%
!! TTGATCTGCATTGGTCTTGC+AGG - chr1.4:48401946-48401965 MS.gene055647:CDS 45.0%
!!! AGCACCTGATTTTGAAGCAG+AGG - chr1.4:48400133-48400152 MS.gene055647:intron 45.0%
!!! AGCAGAGGCTGTTTTTGATC+AGG - chr1.4:48400148-48400167 MS.gene055647:intron 45.0%
!! AAAATTTCAAAAAAAAAAAT+TGG + chr1.4:48399219-48399238 None:intergenic 5.0%
!! AAATTTCAAAAAAAAAAATT+GGG + chr1.4:48399218-48399237 None:intergenic 5.0%
ATGAAGTTTGCCCAGCTGGA+TGG - chr1.4:48401996-48402015 MS.gene055647:CDS 50.0%
CAATGGAAGCTCACTCTGTG+AGG + chr1.4:48400102-48400121 None:intergenic 50.0%
CAGAGTGAGCTTCCATTGGT+TGG - chr1.4:48400104-48400123 MS.gene055647:intron 50.0%
CAGCTGGGCAAACTTCATCT+GGG + chr1.4:48401994-48402013 None:intergenic 50.0%
CCAACCTGTTGGGCAAACAA+AGG + chr1.4:48400390-48400409 None:intergenic 50.0%
CTCACAGAGTGAGCTTCCAT+TGG - chr1.4:48400100-48400119 MS.gene055647:intron 50.0%
GACCTGACTAACCAACCTGT+TGG + chr1.4:48400401-48400420 None:intergenic 50.0%
GATAGAAAGTCAGGTGGCCT+TGG - chr1.4:48401213-48401232 MS.gene055647:intron 50.0%
GCAGTTCTCGCATCTTGCAT+GGG - chr1.4:48401182-48401201 MS.gene055647:intron 50.0%
GGCGAGTGAAGGAAAGTGAA+GGG + chr1.4:48399133-48399152 None:intergenic 50.0%
GTATGCCATATCTACGGGGA+AGG - chr1.4:48401426-48401445 MS.gene055647:intron 50.0%
GTTCTCCTGCACATACTGCA+AGG + chr1.4:48401972-48401991 None:intergenic 50.0%
TGACCGACATGCAGAGTTTG+AGG - chr1.4:48400504-48400523 MS.gene055647:intron 50.0%
TGCAGTTCTCGCATCTTGCA+TGG - chr1.4:48401181-48401200 MS.gene055647:intron 50.0%
TGCATGTCGGTCACTGAAAG+CGG + chr1.4:48400497-48400516 None:intergenic 50.0%
TTGAAGATTGGGGCGAGTGA+AGG + chr1.4:48399144-48399163 None:intergenic 50.0%
! CCTTTGTTTGCCCAACAGGT+TGG - chr1.4:48400387-48400406 MS.gene055647:intron 50.0%
! GGTGCTGCATTTCCAACCAA+TGG + chr1.4:48400119-48400138 None:intergenic 50.0%
! TTGGTGACATCGGAAACCAG+AGG + chr1.4:48401252-48401271 None:intergenic 50.0%
!! AAGCATTCTAGCTCGGAGCA+AGG + chr1.4:48399930-48399949 None:intergenic 50.0%
CAGTGGACAGTGTGGTACGT+TGG - chr1.4:48400554-48400573 MS.gene055647:CDS 55.0%
CCAGATGAAGTTTGCCCAGC+TGG - chr1.4:48401992-48402011 MS.gene055647:CDS 55.0%
CCAGCTGGGCAAACTTCATC+TGG + chr1.4:48401995-48402014 None:intergenic 55.0%
GAGAGCCTTCCCCGTAGATA+TGG + chr1.4:48401434-48401453 None:intergenic 55.0%
GGGCGAGTGAAGGAAAGTGA+AGG + chr1.4:48399134-48399153 None:intergenic 55.0%
GGGTGTTTCAGTGGACAGTG+TGG - chr1.4:48400546-48400565 MS.gene055647:CDS 55.0%
GGTTTCATGGACTTCTCCCC+AGG + chr1.4:48402025-48402044 None:intergenic 55.0%
!! GCCCAACAGGTTGGTTAGTC+AGG - chr1.4:48400396-48400415 MS.gene055647:intron 55.0%
GCAGGCCTTGCAGTATGTGC+AGG - chr1.4:48401964-48401983 MS.gene055647:CDS 60.0%
CCCAGCTGGATGGAAGCCTG+GGG - chr1.4:48402006-48402025 MS.gene055647:CDS 65.0%
CCCCAGGCTTCCATCCAGCT+GGG + chr1.4:48402009-48402028 None:intergenic 65.0%
GCCCAGCTGGATGGAAGCCT+GGG - chr1.4:48402005-48402024 MS.gene055647:CDS 65.0%
TCCCCAGGCTTCCATCCAGC+TGG + chr1.4:48402010-48402029 None:intergenic 65.0%
TGCCCAGCTGGATGGAAGCC+TGG - chr1.4:48402004-48402023 MS.gene055647:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 48398993 48402084 48398993 ID=MS.gene055647
chr1.4 mRNA 48398993 48402084 48398993 ID=MS.gene055647.t1;Parent=MS.gene055647
chr1.4 exon 48401875 48402084 48401875 ID=MS.gene055647.t1.exon1;Parent=MS.gene055647.t1
chr1.4 CDS 48401875 48402084 48401875 ID=cds.MS.gene055647.t1;Parent=MS.gene055647.t1
chr1.4 exon 48400896 48400970 48400896 ID=MS.gene055647.t1.exon2;Parent=MS.gene055647.t1
chr1.4 CDS 48400896 48400970 48400896 ID=cds.MS.gene055647.t1;Parent=MS.gene055647.t1
chr1.4 exon 48400673 48400754 48400673 ID=MS.gene055647.t1.exon3;Parent=MS.gene055647.t1
chr1.4 CDS 48400673 48400754 48400673 ID=cds.MS.gene055647.t1;Parent=MS.gene055647.t1
chr1.4 exon 48400510 48400589 48400510 ID=MS.gene055647.t1.exon4;Parent=MS.gene055647.t1
chr1.4 CDS 48400510 48400589 48400510 ID=cds.MS.gene055647.t1;Parent=MS.gene055647.t1
chr1.4 exon 48399766 48399891 48399766 ID=MS.gene055647.t1.exon5;Parent=MS.gene055647.t1
chr1.4 CDS 48399766 48399891 48399766 ID=cds.MS.gene055647.t1;Parent=MS.gene055647.t1
chr1.4 exon 48399248 48399361 48399248 ID=MS.gene055647.t1.exon6;Parent=MS.gene055647.t1
chr1.4 CDS 48399248 48399361 48399248 ID=cds.MS.gene055647.t1;Parent=MS.gene055647.t1
chr1.4 exon 48398993 48399109 48398993 ID=MS.gene055647.t1.exon7;Parent=MS.gene055647.t1
chr1.4 CDS 48398993 48399109 48398993 ID=cds.MS.gene055647.t1;Parent=MS.gene055647.t1
Gene Sequence

>MS.gene055647

ATGGCATGCTCAGCTACTACTACCTCTGCTTCTTCTCTCTTCTCATCTCTAAACCCTAAATCCTCACTTTTCTCTCCCAAATTACCCTCTTCTTCTACTCTCTCCATCCCTAATTCTCTTCCTAAACCATTCTCTCTCCCTTCACTTTCCTTCACTCGCCCCAATCTTCAACATTCTTCTCGCCGTAGTAGCTTCCTTGTTAAAGCCTCTGTAAGCATTTCCCCCAATTTTTTTTTTTGAAATTTTCTGCATTGTTGAAAATGTTACTGTTGTTTATTGATGTGTGTGTTTTTCTGTATCTGAATTATGTTAATTGAACATTAATTGATTATTGGGTTTGTTGATAATTAGATATGCTAGTTGGTTATGCAATTTGTTTTAATTTGAGTATTTCAGCAACACTGCTTAAGCTTAAAGTATTGAAATTTCTACAACATGTATTTTTTTTTTTTACAATTACAATATTTATAATTCATGCTTGTTTTTGGGATTTTTGTATTTAATTGCTAAATTTTGCATATGCTTGAATTGATTTATTTGAGCTTATATACTTGCATTAGCATTTGTCAGTCTGTTTGGGGGAGCTTATGAAAACAACTTATAGCTTATATGAAAACAATTTCTACAATGTTTCTAGTTCATGTGCATTTTCGGGATTTTTATCTTTAATCACTAAATATTAGGGTCTTCGTTTGACTTATTTGAGCTAATATGTTAGCATATAAGCATTTGTGAGTGTGTTTGAGAGAGGTTATGAAAACAACTTACAACATTTTTATAAGCTGTTTTCATCTTATTTCCAAATTCCATAATATCTCCAAGATAGCTTATGAAAGCAAGTTATAGCTTCTATGAAAACAATTTGACTTTATTTTACCGTCTGTCTAGAAAACAGTTTGACTATACATAAGCAAGTTGTTTATCCAAATTATGTCCTTGCTCCGAGCTAGAATGCTTTAATGCATTTGGGTGTTTTTAAATTTTAAGCATTAAGTATTGAAAATTTGAAATTTCTTCAATATTTCCAGTTCATTTGCGTTTTTGAGAATTTATTCTTTAAATGACTAAATCTTAGTCTAAGTATAGTCTTTAAATTTCTGGTTTGACCTCACAGAGTGAGCTTCCATTGGTTGGAAATGCAGCACCTGATTTTGAAGCAGAGGCTGTTTTTGATCAGGAGTTTATCAAGGTACGTGGCCACCAACCAAAGCGAATATGAATACTGATTCTTAATGGCTTGAAAGTTTTTGCATTTTTATTATGTGGTTATTTTTGAGTAATTGCTGTTGGAAATTTTCATGTTTGATTGACTAAATCATTGTCATTCCAGGTCAAACTCTCTGACTACATTGGGAAGAAGTATGTTATCCTCTTTTTCTATCCATTGGACTTCACCTTTGTTTGCCCAACAGGTTGGTTAGTCAGGTCGATCTAGTTGTACTTTTAAATTTCTTTCTTTAACTTCCTAACGATAATGTGTGCTACTTGACTGCAGAAATCACCGCTTTCAGTGACCGACATGCAGAGTTTGAGGCAATAAATACCGAGATTTTGGGTGTTTCAGTGGACAGTGTGGTACGTTGGTTTATAATGTTTCTTTAATCATTACTGTTGACCTAGTTAACGTTGTGTGTCAATGTGTGTCTGCATAATTTCATGTTATACTTCATTATGACATACCTGCTGTCTGTCTATTAGTTAGCAAGAAAAATGAATCAACTGCAAAGGATTATAGGGCATTTTAAAGATTCCATATCGTTTAAGGATTTATTTTGTAGAGATAAACTAGTTCTTACTATAAGGTTAACAGTTCATACATGTTGTATTTTTACGTCTCTGAATAATTGCTGAATTGAATAAGAATATTGTCAGAGGGAATTTCTTCATAAATAAAGGAAAATGAAAAAATGTGAATGAACATTTGTTCAAACATAAATAATTCAAATATATCTTGTTAATCTACATATGTAATGAGATTCATAGCATTTGTAAACCAATGCCCACAGTCTTTACATAGACTACAAGGATACGCTCACATGCTGAGTGCTGACACATACCCTTGAAAAACAAGGCTTGTTGTCTTGGTATCTGATAGGTTCTTTATGCTCTTATGTATGTGGTATAACCTATGTAACGGAAATTCCAGCATCTGTTTCTTTTTTTATTAGCGATGCCATTGTTTCTATCGTGCAGTTCTCGCATCTTGCATGGGTTCAAACAGATAGAAAGTCAGGTGGCCTTGGTGACTTGAATTATCCTCTGGTTTCCGATGTCACCAAATCCATATCAAAATCTTATGGTGTTCTCATTCCTGATCAGGTATGTCCTAACATATGAAAATAGTGTAACTTATGTATGGCTGAATTATAAATATAATAAAGCAACAGCCGTCTAGATTTTCTGTTGTATCATCTCTCCCTAAACGAACTTAGGGTATGCCATATCTACGGGGAAGGCTCTCCCATTTGCAGAATTTTCTGAGTTATCAGACTTGCTATCTAATCAAAGCAAGTTTTTATTCGACTTTTTAAGGAATTGAACTAGGACATTGCTTTTTCTTCCCAACACTTGTCCTTTACGCTCATATTTCAATGTTGTTTTGGAATGAAATTTACATTGCTTAATAGCATTAACCGGTCAAAAGTTGGCATCTAAACTATTGTCTTCCATTCCACTATTTTGGACTTGTGTCATAATGTACCTAAAAATTCCCAATGTTGCAGGGAATTGCATTGAGAGGATTGTTCATTATTGACAAGGAAGGGGTTATTCAGCACTCTACCATCAACAACTTGGGAATTGGTAGAAGTGTTGATGAGACAAAGAGAACACTGCAGGTGATTATACAACTAATTAGGACCACATCAAGATTGAACAATATCTATTTAGAATATCACATTTTTATTTGTTCACTTCTATATCGTTCTACTGTGTACATAACTTCATTGTCCCCTTGATCTGCATTGGTCTTGCAGGCCTTGCAGTATGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCTGGATGGAAGCCTGGGGAGAAGTCCATGAAACCAGACCCAAAACTTAGCAAAGATTACTTTGCCGCGGTGTAA

Protein sequence

>MS.gene055647.t1

MACSATTTSASSLFSSLNPKSSLFSPKLPSSSTLSIPNSLPKPFSLPSLSFTRPNLQHSSRRSSFLVKASSELPLVGNAAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHAEFEAINTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDVTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKDYFAAV