AlfalfaGEDB | MS.gene20305

M. sativa cultivar XinJiangDaYe / MS.gene20305

KEGG: K14682
GO: GO:0003674 GO:0003824 GO:0004042 GO:0005575 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009987 GO:0016053 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
PFAM: PF00583.28 PF00696.31

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20305.t1	RHN53916.1	96.3	599	14	3	1	592	1	598	0.00E+00	1127.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20305.t1	B5X4Z4	64.7	601	173	9	15	584	18	610	4.4e-210	732.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20305.t1	A0A396HKT9	96.3	599	14	3	1	592	1	598	0.0e+00	1127.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene20305.t1	TR	GNAT

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene058982	MS.gene20305	0.814641	1.39E-51	-1.69E-46

Showing 1 to 1 of 1 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene015265	MS.gene20305	PPI
MS.gene028619	MS.gene20305	PPI
MS.gene071560	MS.gene20305	PPI
MS.gene20305	MS.gene43534	PPI
MS.gene20305	MS.gene09607	PPI
MS.gene20305	MS.gene31184	PPI
MS.gene30927	MS.gene20305	PPI

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20305.t1	MTR_5g015300	94.590	610	14	3	1	592	1	609	0.0	1173

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene20305.t1	AT4G37670	64.725	601	173	9	15	584	18	610	767
MS.gene20305.t1	AT2G22910	69.070	527	143	3	78	584	75	601	744
MS.gene20305.t1	AT4G37670	63.346	532	156	9	15	515	18	541	652

Showing 1 to 3 of 3 entries

Previous1Next

Find 132 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATGTCTGCTTCTTCAAG+AGG	0.505053	5.1:-7888511	None:intergenic
AACGAGGAATTAAAGGAGCG+AGG	0.605298	5.1:-7886358	None:intergenic
AACGCTGCAATGTGTGCAGC+AGG	0.498191	5.1:+7887696	MS.gene20305:CDS
AACGGCTAAGTCGAATGAAT+GGG	0.542375	5.1:+7888764	MS.gene20305:CDS
AACTTGGGCTACTCCAGCTC+TGG	0.523097	5.1:+7888087	MS.gene20305:CDS
AACTTGTTGACAGGTTTGTG+AGG	0.572143	5.1:+7890864	MS.gene20305:intron
AAGAGATGGGATGGGAACAA+TGG	0.612647	5.1:+7889195	MS.gene20305:CDS
AAGAGTGGAATTACTGTTGG+TGG	0.488225	5.1:+7890992	MS.gene20305:CDS
AAGCTTCTACCAAATAAGAG+TGG	0.625840	5.1:+7890977	MS.gene20305:CDS
AAGTTAATATGCGTTATAGA+TGG	0.498769	5.1:+7888448	MS.gene20305:CDS

Showing 1 to 10 of 132 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTAATTGCCAAGACAAAT+AGG	+	chr5.1:7889295-7889314	MS.gene20305:intron	30.0%
AATAAGAGTGGAATTACTGT+TGG	+	chr5.1:7890989-7891008	MS.gene20305:CDS	30.0%
AATATCAGACCAATAATAGG+TGG	+	chr5.1:7888935-7888954	MS.gene20305:intron	30.0%
AATGTTGTCAATTTGCACAT+GGG	-	chr5.1:7886934-7886953	None:intergenic	30.0%
ACAGTAATTCCACTCTTATT+TGG	-	chr5.1:7890989-7891008	None:intergenic	30.0%
AGAAATGACAAGAACAAAAG+TGG	-	chr5.1:7886533-7886552	None:intergenic	30.0%
AGTGCTTAAGTCAGTATATA+AGG	-	chr5.1:7887014-7887033	None:intergenic	30.0%
ATAACAAGCTGTACTCTATA+AGG	-	chr5.1:7889574-7889593	None:intergenic	30.0%
ATATGCAATATTCGTAGACA+TGG	+	chr5.1:7887765-7887784	MS.gene20305:CDS	30.0%
ATGTCTACGAATATTGCATA+TGG	-	chr5.1:7887766-7887785	None:intergenic	30.0%

Showing 1 to 10 of 299 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	7886241	7891036	7886241	ID=MS.gene20305
chr5.1	mRNA	7886241	7891036	7886241	ID=MS.gene20305.t1;Parent=MS.gene20305
chr5.1	exon	7886241	7886543	7886241	ID=MS.gene20305.t1.exon1;Parent=MS.gene20305.t1
chr5.1	CDS	7886241	7886543	7886241	ID=cds.MS.gene20305.t1;Parent=MS.gene20305.t1
chr5.1	exon	7886879	7886966	7886879	ID=MS.gene20305.t1.exon2;Parent=MS.gene20305.t1
chr5.1	CDS	7886879	7886966	7886879	ID=cds.MS.gene20305.t1;Parent=MS.gene20305.t1
chr5.1	exon	7887643	7887851	7887643	ID=MS.gene20305.t1.exon3;Parent=MS.gene20305.t1
chr5.1	CDS	7887643	7887851	7887643	ID=cds.MS.gene20305.t1;Parent=MS.gene20305.t1
chr5.1	exon	7887976	7888127	7887976	ID=MS.gene20305.t1.exon4;Parent=MS.gene20305.t1
chr5.1	CDS	7887976	7888127	7887976	ID=cds.MS.gene20305.t1;Parent=MS.gene20305.t1
chr5.1	exon	7888402	7888825	7888402	ID=MS.gene20305.t1.exon5;Parent=MS.gene20305.t1
chr5.1	CDS	7888402	7888825	7888402	ID=cds.MS.gene20305.t1;Parent=MS.gene20305.t1
chr5.1	exon	7889127	7889224	7889127	ID=MS.gene20305.t1.exon6;Parent=MS.gene20305.t1
chr5.1	CDS	7889127	7889224	7889127	ID=cds.MS.gene20305.t1;Parent=MS.gene20305.t1
chr5.1	exon	7889732	7889843	7889732	ID=MS.gene20305.t1.exon7;Parent=MS.gene20305.t1
chr5.1	CDS	7889732	7889843	7889732	ID=cds.MS.gene20305.t1;Parent=MS.gene20305.t1
chr5.1	exon	7889957	7890116	7889957	ID=MS.gene20305.t1.exon8;Parent=MS.gene20305.t1
chr5.1	CDS	7889957	7890116	7889957	ID=cds.MS.gene20305.t1;Parent=MS.gene20305.t1
chr5.1	exon	7890630	7890702	7890630	ID=MS.gene20305.t1.exon9;Parent=MS.gene20305.t1
chr5.1	CDS	7890630	7890702	7890630	ID=cds.MS.gene20305.t1;Parent=MS.gene20305.t1
chr5.1	exon	7890877	7891036	7890877	ID=MS.gene20305.t1.exon10;Parent=MS.gene20305.t1
chr5.1	CDS	7890877	7891036	7890877	ID=cds.MS.gene20305.t1;Parent=MS.gene20305.t1

Gene Sequence

>MS.gene20305

ATGGCTCCTTCTTTATCGCGCCTCTATAACTCCCTTCCAAACCCTATCAACTTCACCACTTCATCTTCTCGCCAATACTCTCACTTCAATCCTCAACAACTTAATCTCCAATTCAAACCTCGCTCCTTTAATTCCTCGTTTTTCACCGCTCAAAATCACGAAACAATGACAAAACGCAATGCGTTGAACAACGAAGGAGTGAACGGAATCACTGAAGAAGGAGATGAACAACAACAATTCATTCGTTCCCTTCGTGAAGCTTGGCCTTATCTTCTCGCTTATCGTAGAACCACTTTTGTTCTTGTCATTTCTGCTGAAATTGTTGATAGTCCTTCTTCTTTGGATCCCATTCTCAAGGCAAGGCATGCACTTCAAATTGCTATTTTCTTTTTTGTTTGGTTCTGGAGTTGAATTACCTTTGACTCCAGAATTGAATTCATTCTAATTGAAGCTAGAATCGTTAACTTTTGAGTCTAAACGTGGTTTTTATTATATAAGTCACTTCAAAATCAGTTCAACGAACATGAACTTAAATATATCACCTTTTGCTTTTATTGTTTTAATTGCACTTTTTATTTTTTTTTAACTTTTAGTACTTGTTGTGTTAGAGTTAGTAACAGTAATGTTTCTGGGTGCAGGATATAGCTTTTCTTCATCACCTTGGAATCCACTTTGTTATTGTTCCTGGCACCCATGTGCAAATTGACAACATTCTCAAAGATAAAGGTTAGTTGGGTTAAGGGTTTGTTTGGATCACCTTATTTGGATCACCTTATATACTGACTTAAGCACTTAATACTGTTTGGGAGAGCATGTGAAATTGGAAACAATTTTCTTTTGTGGAAACAATTGAAAACAACTTTATGACATGTCCATAAGCTTTTTTCAGCTTATTTTCATTAGCTCTTCAGGATAGCCTGTGAAAACAACTTATACTCCATCCGTCCCTAAATATAAACACCTATGGCATATTTGACGCTTATCAAGAAAAGTTGATGATGTAGTTAATGTGTCCGTTTTATGTATAGATAGATGTACCTAAAATACCATCTGTATATGTATATAATTAAATTTGATATTTCATATTCTAAAACGCGTAGTGGTATTAATTAAGGTTTATTTGGAAAAGAAACAATAAATGCTAAATGCATCTAGTAACTTGAAAATGGCTTATAGTTGTGGACAAATTTTCTTGTCAAACAAGTGATTATATTTAGGGACAGAGCGAGTATGAAATAGTTTATATTATCTTTTGTTACAAAAATAGCTTATACATACGCACATGCACAATAAGGGTTTAATTAAGCTGTTTATCCACCTATGGTGAAAAATGAGGGCTTTTCAATCATAACACGGTGTTACTTGCAAAAACTCATCATTGACCATGTTACTGTGTTTACAGGGAGCAAGCCTAAGTATGTTGGGAGATATAGAATAACAGATGATGAATCTCTAAACGCTGCAATGTGTGCAGCAGGAGGAATAATGTCAATGATAGCAGCTAAACTTTCAGTTGGACCTTCCATATGCAATATTCGTAGACATGGTGATAATAGTCGATTGCATGACGTTAGTGTCAGTGTTACAAGTGGTAACTTTCTTGCAGCCAAGGTTTGATTTTATGATTCATTCATTGTGCTTAGACAATGATCTTGTAAAATTGTCTCTTTTTTTTTTATCATTAATCGCTGTTTTAGAGTATCTTGTTATTTTGTTTTTTTTTTTTTTTTGACAGAGAAGAGGGGTGGTCGGTGGAATTGATTATGGGTCAACTGGGGAAGTTAAAAAAATAGACGCTACTCGCATGCGTGAGAGACTTGATGGCGGTTCTATAGTTATTTTAACCAACTTGGGCTACTCCAGCTCTGGTGAAGTATTGAATTGCAAGTATGCTTTTGTTAGCTTCTAATAATTTCTTTCTAGTTGCTAGCTACATCATATCATATAGTATAACTTATTGCATGAATGATGCTGTCATAGCATTTTTTGTAATTTCTGATTAATCATATCTGATATGTACTTTTTCTAGGATCTTCTTAAGAACTACACTTACGAATAGAATTGAAAAGACAGACTCTTGAAATCATGATAAAAAAGCACAAAAGTACTGCAGTTATGCTTGAATCCTTAATATTAATATGATTATTTGTTCTTTCTCCAGCACCTATGAGGTTGCAACAGCTTGTGCCTTGGCAATTGGGGCGGACAAGTTAATATGCGTTATAGATGGTCCAATACTTGATGAAAATGGACGCCTAATTCGTTTCTTGCCTCTTGAAGAAGCAGACATGTTAATTCGCAAGCGGGCCGAGCAAAGTGAAATAGCAGCTAACTATGTGAAAGCAGTTGAGGAAGAAGGTTTAAATCCTGTTGAGCATAACAATTTTAACGGGGCAGTCAAATCTCCACCTAATGGAAAACGCATTACAGAATGGCATAATGCAACTTTCCACAATGGTGTTGGTTTTGAGAATGGAGATGGCTTAGGGACTAGCGAGCAAGGCTTTGCTATTGGAGGTCAAGAACGGCTAAGTCGAATGAATGGGTACCTGTCAGAATTGGCTGCTGCAGCTTTTGTTTGCAGGGTGAGTCCATGTTATATCTTTTAATTTTCTTGTCAAGTGCCCTGGTTGTGCTTATTTAAGTCTATGTTTGTACATAAGCATTTGTAAAAACAAAAGTATTTTCAAAATCAATATCAGACCAATAATAGGTGGTGTGTGTTGTACATATATATCAGTTACTACAACATATCTTCATTATATTGAGCTTTGACTCATTTCAAATATTGCCACTGTACTCTGGGTGGTTTGGATTAACTTTCAAATTCAGTTGATGCATGTTTCTTTGGTATGTTGTGAGTAATACCATCTTCCATTTTATCAGGGAGGGGTTCAAAGAGTTCACTTGTTGGATGGCACTATTAGTGGAGTTTTATTGTTGGAATTGTTTACAAGAGATGGGATGGGAACAATGGTGGCTAGGTAAGCAAGCTTTGCAGTATGTTTCTGCACTAGATCTTATGCTTGCAAGTTATTTTGTTCAAGGGTTCTTAACTAATTGCCAAGACAAATAGGTGTTTGAAAATAAATTGTATCCTTGAAGTTGTTTTAGCTTTTAAGAACAGTTCAGTTGGCATCCTTGTGGGTTTTTCCTGGTACATGTGATTTTACTCTAGTGAGATCCAGACTTATCTGTAAGGATGTAAATATGCGAGTTGGATCTGAACTCCATTTGTGAGCATTCCCATGTTTTCCCTTTCAAGAAACCATTAGTTACAAAAAAGATCGAAGGATTAGTTTTGAGACTTGAGATAATGTTTCATATTAGCCTTATAGAGTACAGCTTGTTATAATTCATAGTACACATACTACAACTACAAAATTAAATTTGTACCAAAAACCTACGATGTTCATTTCCCACATACTTAAAAGTTTAGAAAGTTATTGTCTACATCAGATTGTTCATGGCGCTGTATTTGAATTTTGCAGTGACCTTTACGAAGGCACTCGAAAGGCAGAGAAAGAAGATTTTTCTGGAATCAAACAACTTATTCAGCCTTTGGAGGCATGTGGCATACTGGTTAAGCGGTCTGATGAAGAGGTTTGCTTAACTATGTATCTACTCTGTGTCTATTGTAGTTAGTTACATAGCTTACATAGCCGTGGTAATTTGTCTAAACATTTATCATTTTATATCATTCTCTCTGTTTATAGCTGCTACAAACGTTGGATAATTTCGTTGTTGTGGAAAGAGAAGGTCAAATAATTGCATGTGGTGGCCTTTTTCCTTACCCTGAGGAGAAGTGTGCAGAGGTTGCTGCTATTGCAGTATCTCCTGATTGCCGTGGTCAAGGACAGGGAGACAAATTGCTTGGTATGTTCATTACTGAAGTGCTTGAAATTATTTGTAAATGATGGATGGTTACTACTGAGTAATAATTTGTTCTATGTATTGGGATGTTTTCGGTATTTTTGTTGCTTATGCTACATTCCAGAACGATATTAATCAGCTTCAGACCATATTTGTTACAAAAGAGTTTTGAAACTAAAGAAAAATGAAGACTTGAACCATGTAAACCTGAATTATGATTATGAAAGGATGCAATATTAATTCACAAGACATGTTTGGGAAGTCCCAGAATAGTTGTACTAGTAATAGCAACAAACTATGTATAATCAATAAAAAAACTCATAAGAAAACACTATTTTTTTTTGTGTTAAAAAGTTTCCACTTTCAACATGTTTATGTTTCAAGAAGATATTTTTCAGGCTTCAGCTTTGGATGTTAATCAGCTGTTGTATAATTTTAATCATCAAATGCCCTTGCATGTAATCATGCATGCCACATCTTTTTAATATATATAATATAATGATGAAATATGTGCAGATTATATGGAGAAGAAAGCAGCATCTCTTGGATTCAATAAGCTTTTCCTACTTACAACACGTACAGCAGATTGGTAAGCAACTTCCCCTAATCCATGTCATTTAGGCCTTATCCACAATCAATGTCATTTTTCACTATTAGAAGACAAGTTTTTTTGTTTAAAGGACTTAAAAGTTTGCTTTTTAATTGCTGCACTATATCTTCATAATTGCATTTCTAAACAAAATGATTCCCAACTTGTTGACAGGTTTGTGAGGCGTGGATTTTCAGAATGTTCAATTGATAATATCCCTGAAAAGAAAAAGAAAACAATCAACATGTCCCGCAATTCTAAGTATTATATGAAGAAGCTTCTACCAAATAAGAGTGGAATTACTGTTGGTGGAAACAAATTGGTTACAAATTAG

Protein sequence

>MS.gene20305.t1

MAPSLSRLYNSLPNPINFTTSSSRQYSHFNPQQLNLQFKPRSFNSSFFTAQNHETMTKRNALNNEGVNGITEEGDEQQQFIRSLREAWPYLLAYRRTTFVLDIAFLHHLGIHFVIVPGTHVQIDNILKDKGSKPKYVGRYRITDDESLNAAMCAAGGIMSMIAAKLSVGPSICNIRRHGDNSRLHDVSVSVTSGNFLAAKRRGVVGGIDYGSTGEVKKIDATRMRERLDGGSIVILTNLGYSSSGEVLNCNTYEVATACALAIGADKLICVIDGPILDENGRLIRFLPLEEADMLIRKRAEQSEIAANYVKAVEEEGLNPVEHNNFNGAVKSPPNGKRITEWHNATFHNGVGFENGDGLGTSEQGFAIGGQERLSRMNGYLSELAAAAFVCRGGVQRVHLLDGTISGVLLLELFTRDGMGTMVASDLYEGTRKAEKEDFSGIKQLIQPLEACGILVKRSDEELLQTLDNFVVVEREGQIIACGGLFPYPEEKCAEVAAIAVSPDCRGQGQGDKLLDYMEKKAASLGFNKLFLLTTRTADWFVRRGFSECSIDNIPEKKKKTINMSRNSKYYMKKLLPNKSGITVGGNKLVTN