AlfalfaGEDB | MS.gene028619

M. sativa cultivar XinJiangDaYe / MS.gene028619

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12796.10 PF13962.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028619.t1	PNY06919.1	94.6	425	21	1	1	425	1	423	5.70E-126	461.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028619.t1	Q6AWW5	56.5	255	94	3	174	425	284	524	4.1e-64	246.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028619.t1	A0A2K3NV51	94.6	425	21	1	1	425	1	423	4.1e-126	461.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene028619	MS.gene008653	PPI
MS.gene028619	MS.gene05138	PPI
MS.gene028619	MS.gene41484	PPI
MS.gene028619	MS.gene049555	PPI
MS.gene028619	MS.gene073427	PPI
MS.gene028619	MS.gene38420	PPI
MS.gene028619	MS.gene41487	PPI
MS.gene028619	MS.gene008452	PPI
MS.gene028619	MS.gene41481	PPI
MS.gene028619	MS.gene049551	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028619.t1	MTR_2g096190	97.412	425	10	1	1	425	121	544	0.0	840
MS.gene028619.t1	MTR_2g096190	31.788	151	102	1	17	166	68	218	1.23e-15	79.3
MS.gene028619.t1	MTR_4g062100	78.638	426	86	3	1	425	125	546	0.0	647
MS.gene028619.t1	MTR_4g062100	32.143	168	100	6	15	172	31	194	9.64e-11	63.9
MS.gene028619.t1	MTR_7g100390	65.566	424	138	4	2	425	105	520	0.0	528
MS.gene028619.t1	MTR_7g117620	59.479	422	155	4	5	425	140	546	3.42e-169	486
MS.gene028619.t1	MTR_7g117620	33.540	161	95	7	19	170	47	204	2.75e-11	65.9
MS.gene028619.t1	MTR_1g115575	48.499	433	190	5	1	425	186	593	1.16e-128	384
MS.gene028619.t1	MTR_1g032100	46.729	428	210	7	5	425	115	531	6.47e-125	372
MS.gene028619.t1	MTR_8g105260	45.455	429	214	8	5	425	122	538	2.89e-121	363

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028619.t1	AT1G07710	76.415	424	98	1	2	425	122	543	0.0	617
MS.gene028619.t1	AT1G07710	76.415	424	98	1	2	425	122	543	0.0	617
MS.gene028619.t1	AT5G60070	68.981	432	116	6	1	425	128	548	0.0	558
MS.gene028619.t1	AT5G02620	62.413	431	139	4	1	425	111	524	3.96e-176	503
MS.gene028619.t1	AT5G02620	62.413	431	139	4	1	425	111	524	3.96e-176	503
MS.gene028619.t1	AT5G02620	62.413	431	139	4	1	425	111	524	3.96e-176	503
MS.gene028619.t1	AT5G02620	59.251	454	139	5	1	425	111	547	7.42e-171	490
MS.gene028619.t1	AT5G02620	34.524	168	109	1	6	172	47	214	5.51e-17	83.6
MS.gene028619.t1	AT5G02620	59.251	454	139	5	1	425	111	547	7.42e-171	490
MS.gene028619.t1	AT5G02620	34.524	168	109	1	6	172	47	214	5.51e-17	83.6

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Find 81 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATAAATGGTGCTTC+TGG	0.278164	2.3:-6341971	None:intergenic
AAAGCCCTTCTATTAGAGCA+TGG	0.609187	2.3:+6341623	MS.gene028619:CDS
AAATATGCTTCTAGGACAAA+AGG	0.471296	2.3:+6341523	MS.gene028619:CDS
AACACCATGCTCTAATAGAA+GGG	0.595108	2.3:-6341627	None:intergenic
AACCAGGAAAGCCAGAACTC+GGG	0.603570	2.3:+6341241	MS.gene028619:CDS
AACTACTTCCTGCTTCCAAT+AGG	0.491463	2.3:-6340968	None:intergenic
AACTATAATGGCTACAACTT+TGG	0.277317	2.3:+6342219	MS.gene028619:CDS
AAGAGCCAGGAGTTGCAGCA+AGG	0.615235	2.3:+6341081	MS.gene028619:CDS
AAGCAAAGCGAAGAAACAAA+TGG	0.557199	2.3:+6342069	MS.gene028619:CDS
AAGTCTATAAAACCACCACA+AGG	0.715719	2.3:+6341659	MS.gene028619:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTATAATGGCTACAACTT+TGG	+	chr2.3:6342219-6342238	MS.gene028619:CDS	30.0%
ACTATAATGGCTACAACTTT+GGG	+	chr2.3:6342220-6342239	MS.gene028619:CDS	30.0%
AGATCCTTCAACAATAAACA+TGG	+	chr2.3:6341184-6341203	MS.gene028619:CDS	30.0%
ATAGACATATACTAGGTACT+AGG	+	chr2.3:6341292-6341311	MS.gene028619:intron	30.0%
ATCAACAAGATGAATACAGA+AGG	+	chr2.3:6341800-6341819	MS.gene028619:CDS	30.0%
ATCCAAACAATATTCCAGAA+GGG	+	chr2.3:6341921-6341940	MS.gene028619:CDS	30.0%
CAGATTGTAAATATGCTTCT+AGG	+	chr2.3:6341515-6341534	MS.gene028619:intron	30.0%
CATTATAGGAGCAACTATAA+TGG	+	chr2.3:6342207-6342226	MS.gene028619:CDS	30.0%
CATTATAGTTGCTCCTATAA+TGG	-	chr2.3:6342209-6342228	None:intergenic	30.0%
GAACATTAGGAAATCTTCAA+TGG	+	chr2.3:6342294-6342313	MS.gene028619:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	6340870	6342402	6340870	ID=MS.gene028619
chr2.3	mRNA	6340870	6342402	6340870	ID=MS.gene028619.t1;Parent=MS.gene028619
chr2.3	exon	6340870	6341262	6340870	ID=MS.gene028619.t1.exon1;Parent=MS.gene028619.t1
chr2.3	CDS	6340870	6341262	6340870	ID=cds.MS.gene028619.t1;Parent=MS.gene028619.t1
chr2.3	exon	6341518	6342402	6341518	ID=MS.gene028619.t1.exon2;Parent=MS.gene028619.t1
chr2.3	CDS	6341518	6342402	6341518	ID=cds.MS.gene028619.t1;Parent=MS.gene028619.t1

Gene Sequence

>MS.gene028619

ATGGAGGTTCATCCTGAATTGTCAATGACAGTGGATCCATCAAACACAACAGCTTTGCATACAGCTGCAACACAAGGACATATTGAGATAGTGAAATTCCTATTGGAAGCAGGAAGTAGTTTGGCAACCATTGCTAAAAGTAACGGGAAAACGGCTCTTCATTCTGCTGCAAGAAATGGACATTTGGAGGTTGTGAAAGCACTTCTTGAGAAAGAGCCAGGAGTTGCAGCAAGGACTGATAAAAAGGGCCAGACAGCACTTCACATGGCAGTAAAGGGACAAAATCTTGAGGTAGTGGAAGAGTTGATAAAAGCAGATCCTTCAACAATAAACATGGTTGATACTAAAGGAAACACAACATTGCATATAGCAACCAGGAAAGCCAGAACTCGGGTAAATTACATAATGCTTGTCAAAATTCCATAGACATATACTAGGTACTAGGGTCTGTTTGTATTGAATTATTTGAATTTGTTTTCTGGCATAAGCACTTCTGAAACTGTTTGGAAGTGCTTGTGAAAACAGCTTATGACACATCCATAAGCTACTTTCTGCAACTTAATTTTGAAATCCGTCATTGACAATGGAAAGGGAAAATTATTGACATCTGTTTCTGAGAGGCTAAAATATGTAAATTTGTTTGTGCAGATTGTAAATATGCTTCTAGGACAAAAGGAAACAAATGTAAGTGCTGTTAACAGATCAGGTGAAACAGCAGTAGACACTGCTGAGAAAATAGGGAACCAGGATGTTAAAGCCCTTCTATTAGAGCATGGTGTTCAGAGTGCAAAGTCTATAAAACCACCACAAGGATCAACAAGCACAGCTCGCGAGTTAAAGCAAACTGTAAGCGACATAAAGCACGAGGTACATTACCAATTAGAACACACACGCCAGACACGAAAACGTGTTCAAGGAATCGCAAAACGTATCAACAAGATGAATACAGAAGGACTCAACAATGCAATAAACTCGACAACCGTTGTGGCAGTACTAATAGCAACGGTTGCATTTGCTGCGATTTTCACTGTCCCTGGTCAATTTGTTGATGATCCAAACAATATTCCAGAAGGGATGATACTTGGTGAAGCAAATATATCTCCAGAAGCACCATTTATAATTTTCTTTGTATTTGATTCTATTGCACTCTTCATTTCTCTGGCTGTTGTGGTTGTTCAAACTTCGGTTGTCGTTATAGAAAGCAAAGCGAAGAAACAAATGGCGGCTATAATTAATAAGCTAATGTGGTTGGCTTGTGTGCTTATTTCTGTGGCATTTTTAGCATTGTCATTTGTTGTTGTTGGAAAGGAAGAAAAATGGTTGGCAATTTTTGTTACCATTATAGGAGCAACTATAATGGCTACAACTTTGGGAACTATGTGTTATTGGGTCATTAAGCATCGAATTGAGGCATCAAACTTGAGGAACATTAGGAAATCTTCAATGGAAAGCAAATCAAAGTCTTTTTCAGTGACAGCTTTGTCAGATTCTGAGCTAATGAACAATGAATTTAAGAAAATGTATGCTATTTAG

Protein sequence

>MS.gene028619.t1

MEVHPELSMTVDPSNTTALHTAATQGHIEIVKFLLEAGSSLATIAKSNGKTALHSAARNGHLEVVKALLEKEPGVAARTDKKGQTALHMAVKGQNLEVVEELIKADPSTINMVDTKGNTTLHIATRKARTRIVNMLLGQKETNVSAVNRSGETAVDTAEKIGNQDVKALLLEHGVQSAKSIKPPQGSTSTARELKQTVSDIKHEVHYQLEHTRQTRKRVQGIAKRINKMNTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPNNIPEGMILGEANISPEAPFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKKQMAAIINKLMWLACVLISVAFLALSFVVVGKEEKWLAIFVTIIGATIMATTLGTMCYWVIKHRIEASNLRNIRKSSMESKSKSFSVTALSDSELMNNEFKKMYAI