Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20344.t1 | XP_003611221.1 | 97.7 | 441 | 10 | 0 | 1 | 441 | 1 | 441 | 2.60E-243 | 850.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20344.t1 | Q9LNA5 | 69.0 | 436 | 131 | 3 | 8 | 441 | 8 | 441 | 6.8e-163 | 575.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20344.t1 | G7KG51 | 97.7 | 441 | 10 | 0 | 1 | 441 | 1 | 441 | 1.9e-243 | 850.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene20344 | 0.83528 | 1.84E-56 | -1.69E-46 |
| MS.gene05156 | MS.gene20344 | 0.815911 | 7.25E-52 | -1.69E-46 |
| MS.gene051718 | MS.gene20344 | 0.815953 | 7.10E-52 | -1.69E-46 |
| MS.gene052560 | MS.gene20344 | 0.834988 | 2.18E-56 | -1.69E-46 |
| MS.gene052579 | MS.gene20344 | 0.819946 | 8.89E-53 | -1.69E-46 |
| MS.gene054056 | MS.gene20344 | 0.817696 | 2.88E-52 | -1.69E-46 |
| MS.gene054057 | MS.gene20344 | 0.841665 | 4.14E-58 | -1.69E-46 |
| MS.gene056185 | MS.gene20344 | 0.809837 | 1.55E-50 | -1.69E-46 |
| MS.gene056530 | MS.gene20344 | 0.80763 | 4.60E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20344.t1 | MTR_5g011580 | 97.732 | 441 | 10 | 0 | 1 | 441 | 1 | 441 | 0.0 | 894 |
| MS.gene20344.t1 | MTR_4g101950 | 77.098 | 441 | 101 | 0 | 1 | 441 | 1 | 441 | 0.0 | 726 |
| MS.gene20344.t1 | MTR_7g022470 | 51.333 | 450 | 193 | 5 | 8 | 441 | 12 | 451 | 1.85e-152 | 440 |
| MS.gene20344.t1 | MTR_7g028050 | 49.777 | 448 | 203 | 5 | 8 | 441 | 3 | 442 | 1.67e-148 | 430 |
| MS.gene20344.t1 | MTR_5g047260 | 50.452 | 442 | 202 | 3 | 8 | 441 | 19 | 451 | 6.64e-148 | 429 |
| MS.gene20344.t1 | MTR_3g088885 | 46.548 | 449 | 213 | 8 | 3 | 431 | 6 | 447 | 9.14e-130 | 382 |
| MS.gene20344.t1 | MTR_1g029520 | 47.512 | 402 | 187 | 6 | 22 | 399 | 254 | 655 | 1.46e-120 | 367 |
| MS.gene20344.t1 | MTR_5g047260 | 53.313 | 332 | 147 | 2 | 8 | 331 | 19 | 350 | 9.95e-119 | 351 |
| MS.gene20344.t1 | MTR_7g028050 | 50.898 | 334 | 150 | 4 | 114 | 441 | 14 | 339 | 1.20e-109 | 327 |
| MS.gene20344.t1 | MTR_5g015170 | 42.105 | 418 | 205 | 7 | 9 | 391 | 12 | 427 | 1.49e-106 | 324 |
| MS.gene20344.t1 | MTR_5g047260 | 52.577 | 291 | 130 | 2 | 8 | 290 | 19 | 309 | 1.01e-98 | 298 |
| MS.gene20344.t1 | MTR_4g097380 | 39.394 | 429 | 225 | 5 | 2 | 399 | 24 | 448 | 3.11e-97 | 300 |
| MS.gene20344.t1 | MTR_1g012740 | 28.571 | 133 | 88 | 2 | 231 | 362 | 27 | 153 | 8.49e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20344.t1 | AT1G12420 | 68.172 | 443 | 137 | 3 | 1 | 441 | 1 | 441 | 0.0 | 599 |
| MS.gene20344.t1 | AT4G22780 | 59.556 | 450 | 168 | 6 | 1 | 439 | 1 | 447 | 0.0 | 532 |
| MS.gene20344.t1 | AT4G22780 | 59.556 | 450 | 168 | 6 | 1 | 439 | 1 | 447 | 0.0 | 532 |
| MS.gene20344.t1 | AT1G12420 | 67.655 | 371 | 116 | 3 | 73 | 441 | 1 | 369 | 1.47e-176 | 498 |
| MS.gene20344.t1 | AT1G69040 | 49.002 | 451 | 205 | 5 | 8 | 441 | 13 | 455 | 5.86e-148 | 429 |
| MS.gene20344.t1 | AT1G69040 | 49.002 | 451 | 205 | 5 | 8 | 441 | 9 | 451 | 6.31e-148 | 429 |
| MS.gene20344.t1 | AT3G01990 | 52.672 | 393 | 176 | 3 | 8 | 391 | 4 | 395 | 3.60e-140 | 408 |
| MS.gene20344.t1 | AT3G01990 | 52.672 | 393 | 176 | 3 | 8 | 391 | 4 | 395 | 3.60e-140 | 408 |
| MS.gene20344.t1 | AT3G01990 | 52.672 | 393 | 176 | 3 | 8 | 391 | 18 | 409 | 3.92e-140 | 409 |
| MS.gene20344.t1 | AT3G01990 | 52.672 | 393 | 176 | 3 | 8 | 391 | 18 | 409 | 3.92e-140 | 409 |
| MS.gene20344.t1 | AT3G01990 | 52.672 | 393 | 176 | 3 | 8 | 391 | 18 | 409 | 5.49e-140 | 408 |
| MS.gene20344.t1 | AT3G01990 | 52.672 | 393 | 176 | 3 | 8 | 391 | 4 | 395 | 7.97e-140 | 407 |
| MS.gene20344.t1 | AT1G76990 | 46.429 | 448 | 215 | 7 | 3 | 431 | 6 | 447 | 1.21e-134 | 395 |
| MS.gene20344.t1 | AT1G76990 | 46.429 | 448 | 215 | 7 | 3 | 431 | 6 | 447 | 1.21e-134 | 395 |
| MS.gene20344.t1 | AT1G76990 | 46.429 | 448 | 215 | 7 | 3 | 431 | 6 | 447 | 1.21e-134 | 395 |
| MS.gene20344.t1 | AT1G76990 | 46.429 | 448 | 215 | 7 | 3 | 431 | 6 | 447 | 1.21e-134 | 395 |
| MS.gene20344.t1 | AT1G76990 | 46.429 | 448 | 215 | 7 | 3 | 431 | 6 | 447 | 1.21e-134 | 395 |
| MS.gene20344.t1 | AT2G03730 | 47.692 | 455 | 204 | 8 | 8 | 439 | 13 | 456 | 3.33e-133 | 391 |
| MS.gene20344.t1 | AT2G03730 | 47.692 | 455 | 204 | 8 | 8 | 439 | 13 | 456 | 3.33e-133 | 391 |
| MS.gene20344.t1 | AT3G01990 | 51.829 | 328 | 148 | 3 | 8 | 326 | 18 | 344 | 1.02e-110 | 330 |
| MS.gene20344.t1 | AT3G01990 | 51.829 | 328 | 148 | 3 | 8 | 326 | 4 | 330 | 1.11e-110 | 330 |
| MS.gene20344.t1 | AT3G01990 | 52.012 | 323 | 145 | 3 | 8 | 321 | 18 | 339 | 1.15e-109 | 327 |
| MS.gene20344.t1 | AT5G25320 | 38.964 | 444 | 220 | 7 | 3 | 396 | 6 | 448 | 2.61e-109 | 332 |
| MS.gene20344.t1 | AT5G25320 | 39.268 | 410 | 200 | 6 | 35 | 396 | 1 | 409 | 1.61e-103 | 316 |
| MS.gene20344.t1 | AT5G65890 | 39.430 | 421 | 222 | 4 | 4 | 391 | 8 | 428 | 1.34e-99 | 306 |
| MS.gene20344.t1 | AT5G65890 | 39.430 | 421 | 222 | 4 | 4 | 391 | 8 | 428 | 1.34e-99 | 306 |
| MS.gene20344.t1 | AT5G65890 | 39.200 | 375 | 195 | 4 | 50 | 391 | 2 | 376 | 1.39e-88 | 276 |
| MS.gene20344.t1 | AT5G65890 | 39.200 | 375 | 195 | 4 | 50 | 391 | 2 | 376 | 1.39e-88 | 276 |
| MS.gene20344.t1 | AT3G01990 | 49.477 | 287 | 135 | 3 | 8 | 285 | 4 | 289 | 6.67e-88 | 270 |
| MS.gene20344.t1 | AT3G01990 | 49.477 | 287 | 135 | 3 | 8 | 285 | 18 | 303 | 7.22e-88 | 271 |
| MS.gene20344.t1 | AT5G25320 | 37.940 | 369 | 178 | 7 | 3 | 321 | 6 | 373 | 8.47e-85 | 265 |
| MS.gene20344.t1 | AT5G65890 | 38.851 | 296 | 163 | 2 | 114 | 391 | 19 | 314 | 3.82e-68 | 221 |
| MS.gene20344.t1 | AT2G39570 | 25.430 | 291 | 192 | 11 | 32 | 305 | 20 | 302 | 3.15e-12 | 68.6 |
Find 78 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTCTGGTTCTGAACTAAT+TGG | 0.190192 | 5.1:-5020761 | None:intergenic |
| AACCTCTTTCTGCCCAATTC+TGG | 0.223295 | 5.1:-5020484 | None:intergenic |
| TATGTTAAAGACTGCGATTC+TGG | 0.254803 | 5.1:+5020248 | MS.gene20344:CDS |
| GAGAAGGAATCTGTATAGTT+TGG | 0.274326 | 5.1:+5021239 | MS.gene20344:CDS |
| TTCCACATCACTCATCAAAA+TGG | 0.335568 | 5.1:+5019911 | MS.gene20344:CDS |
| CTTCTGCCTAACAGACTCTA+TGG | 0.349251 | 5.1:-5021097 | None:intergenic |
| CTCACTGCGCTTGAATTATC+AGG | 0.356914 | 5.1:+5020113 | MS.gene20344:CDS |
| TTGGTTACTATTTGTGTTGA+TGG | 0.365674 | 5.1:-5020603 | None:intergenic |
| GGTGCAGTGCTATGGTCTAT+TGG | 0.366201 | 5.1:+5021207 | MS.gene20344:CDS |
| TGAATTACGCGTTGTCGCTC+TGG | 0.374088 | 5.1:-5020776 | None:intergenic |
| GCTCTGGTTCTGAACTAATT+GGG | 0.377900 | 5.1:-5020760 | None:intergenic |
| CTGTAGTGACAGTCCAGAAT+TGG | 0.378239 | 5.1:+5020471 | MS.gene20344:CDS |
| TCTATGGTTGTTGGATCAGC+TGG | 0.393817 | 5.1:-5021081 | None:intergenic |
| AGAAGGAATCTGTATAGTTT+GGG | 0.393916 | 5.1:+5021240 | MS.gene20344:CDS |
| GACTGTCACTACAGTGTTAT+CGG | 0.402937 | 5.1:-5020462 | None:intergenic |
| GTGCAGTGCTATGGTCTATT+GGG | 0.403463 | 5.1:+5021208 | MS.gene20344:CDS |
| TTCTGATGGCAAATGGTTCA+TGG | 0.431070 | 5.1:+5019772 | MS.gene20344:CDS |
| GAGGATCAAACAGTTGGAAT+TGG | 0.444229 | 5.1:+5021183 | MS.gene20344:CDS |
| AAATAGTAACCAAGCTTACT+TGG | 0.448187 | 5.1:+5020613 | MS.gene20344:CDS |
| ATATATCTTCTGATGGCAAA+TGG | 0.450984 | 5.1:+5019765 | MS.gene20344:CDS |
| ATGCGAACCTTCCGAGAGAA+TGG | 0.453096 | 5.1:+5020976 | MS.gene20344:CDS |
| AAGCGCAGTGAGACCGTTTG+AGG | 0.464728 | 5.1:-5020102 | None:intergenic |
| ATCGGAAGTAAGCTTGAGAA+TGG | 0.464732 | 5.1:-5020444 | None:intergenic |
| CATGGAGTGGCCAGCATGTA+CGG | 0.465567 | 5.1:+5018768 | None:intergenic |
| CGTGTGCTCTACTGCTACTC+TGG | 0.478413 | 5.1:+5019533 | MS.gene20344:CDS |
| TTCAAGCAATTTAGAAGTGA+AGG | 0.478862 | 5.1:+5021125 | MS.gene20344:CDS |
| CTAACAGACTCTATGGTTGT+TGG | 0.492579 | 5.1:-5021090 | None:intergenic |
| CAACAACCATAGAGTCTGTT+AGG | 0.493077 | 5.1:+5021091 | MS.gene20344:CDS |
| TGTAGTGACAGTCCAGAATT+GGG | 0.496448 | 5.1:+5020472 | MS.gene20344:CDS |
| TCTCTGAGAATCCTCAATAG+TGG | 0.500160 | 5.1:-5020273 | None:intergenic |
| GTGAGAACTAATTCCTCAAA+CGG | 0.503230 | 5.1:+5020089 | MS.gene20344:CDS |
| TTCTATGTAACAGACGTGAC+TGG | 0.504956 | 5.1:+5021054 | MS.gene20344:CDS |
| TACAGGTTATTAGTGCAAGA+AGG | 0.506344 | 5.1:+5019678 | MS.gene20344:intron |
| TAATAATTACCAAGTAAGCT+TGG | 0.509666 | 5.1:-5020622 | None:intergenic |
| TCAATGTTTAAAAGCTTCTG+TGG | 0.509902 | 5.1:+5020796 | MS.gene20344:CDS |
| AATATGAAAAGCTCTTGATA+AGG | 0.512455 | 5.1:+5018794 | MS.gene20344:CDS |
| TAAAAGCTTCTGTGGAGAGA+AGG | 0.512503 | 5.1:+5020804 | MS.gene20344:CDS |
| GAGTCTGTTAGGCAGAAGAT+TGG | 0.515644 | 5.1:+5021102 | MS.gene20344:CDS |
| GTCTTCTGATGATAAATCAA+TGG | 0.517572 | 5.1:-5021153 | None:intergenic |
| GAGAGAGAGGATCAAACAGT+TGG | 0.521675 | 5.1:+5021177 | MS.gene20344:CDS |
| TCATATTCATCCGTACATGC+TGG | 0.524946 | 5.1:-5018778 | None:intergenic |
| GAATTGGTGGTGCAGTGCTA+TGG | 0.527675 | 5.1:+5021199 | MS.gene20344:CDS |
| TAACATTAAGCCCATTCTCT+CGG | 0.533741 | 5.1:-5020987 | None:intergenic |
| TGCGAACCTTCCGAGAGAAT+GGG | 0.534209 | 5.1:+5020977 | MS.gene20344:CDS |
| CGATTCTGGATCCACTATTG+AGG | 0.535668 | 5.1:+5020262 | MS.gene20344:CDS |
| GTTATTAGTGCAAGAAGGAA+TGG | 0.538576 | 5.1:+5019683 | MS.gene20344:CDS |
| AAAAGCTTCTGTGGAGAGAA+GGG | 0.546145 | 5.1:+5020805 | MS.gene20344:CDS |
| CTCTGGTTCTGAACTAATTG+GGG | 0.551910 | 5.1:-5020759 | None:intergenic |
| ACATTGAAGATCAGCAAGTA+CGG | 0.553801 | 5.1:-5020171 | None:intergenic |
| CTCTACTGCTACTCTGGTCA+AGG | 0.554798 | 5.1:+5019539 | MS.gene20344:CDS |
| AATCAAACTATTATTTGATG+TGG | 0.555718 | 5.1:+5020538 | MS.gene20344:CDS |
| GATCAAACAGTTGGAATTGG+TGG | 0.555848 | 5.1:+5021186 | MS.gene20344:CDS |
| AGTTGTAAATGTTCAATGCA+AGG | 0.561824 | 5.1:+5020511 | MS.gene20344:CDS |
| ATTAAGCCCATTCTCTCGGA+AGG | 0.564565 | 5.1:-5020983 | None:intergenic |
| CGACAGAAGACCAACTCTAT+CGG | 0.565281 | 5.1:-5020138 | None:intergenic |
| AAGGCTTATATATCTTCTGA+TGG | 0.568126 | 5.1:+5019758 | MS.gene20344:CDS |
| GTCCAGAATTGGGCAGAAAG+AGG | 0.570074 | 5.1:+5020482 | MS.gene20344:CDS |
| TCGGAAGTAAGCTTGAGAAT+GGG | 0.570198 | 5.1:-5020443 | None:intergenic |
| ATGTGATGTTGTTGAAGCTA+AGG | 0.571401 | 5.1:+5020190 | MS.gene20344:CDS |
| CTATTGGGAGCCTTGTGAGA+AGG | 0.589228 | 5.1:+5021223 | MS.gene20344:CDS |
| CAGAGTAGCAGTAGAGCACA+CGG | 0.589491 | 5.1:-5019532 | None:intergenic |
| CGATAGAGTTGGTCTTCTGT+CGG | 0.600658 | 5.1:+5020139 | MS.gene20344:CDS |
| TCATCAGAAGACAGAGAGAG+AGG | 0.602288 | 5.1:+5021164 | MS.gene20344:CDS |
| TGTGGAGAGAAGGGCATCTG+AGG | 0.606335 | 5.1:+5020814 | MS.gene20344:CDS |
| TTATCAGGAACCGATAGAGT+TGG | 0.606433 | 5.1:+5020128 | MS.gene20344:CDS |
| TAGAGTTGGTCTTCTGTCGG+AGG | 0.616833 | 5.1:+5020142 | MS.gene20344:CDS |
| CTGTCATGCATAGTGAAAGA+AGG | 0.621068 | 5.1:+5020378 | MS.gene20344:CDS |
| TATGCACAGAAGACAAGCAA+GGG | 0.636043 | 5.1:+5020938 | MS.gene20344:CDS |
| GCTAAGGTGTGGACTCACAA+TGG | 0.637755 | 5.1:+5020206 | MS.gene20344:CDS |
| GTCTTTAACATAGATCAAAG+AGG | 0.646875 | 5.1:-5020237 | None:intergenic |
| TTATGCACAGAAGACAAGCA+AGG | 0.649693 | 5.1:+5020937 | MS.gene20344:CDS |
| GATATCCACCATAGAAAACA+TGG | 0.649833 | 5.1:+5021020 | MS.gene20344:CDS |
| TGATAAGGATGAGCACACCC+AGG | 0.654330 | 5.1:+5018809 | MS.gene20344:CDS |
| TCGCTGATCGTGACTACGAG+AGG | 0.665248 | 5.1:+5020417 | MS.gene20344:CDS |
| TATACAGATTCCTTCTCACA+AGG | 0.668041 | 5.1:-5021233 | None:intergenic |
| GATGGCAAATGGTTCATGGA+TGG | 0.678400 | 5.1:+5019776 | MS.gene20344:CDS |
| GGTATGCAATTTGACAGACA+TGG | 0.693118 | 5.1:+5020559 | MS.gene20344:CDS |
| ATGTTGTTGAAGCTAAGGTG+TGG | 0.713930 | 5.1:+5020195 | MS.gene20344:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAAAATATATAGAAC+AGG | + | chr5.1:5019955-5019974 | MS.gene20344:CDS | 10.0% |
| !! | ATCAATATTAACATTATATG+TGG | - | chr5.1:5020013-5020032 | None:intergenic | 15.0% |
| !! | TTCAAATCATTAATTATTTC+AGG | + | chr5.1:5020709-5020728 | MS.gene20344:intron | 15.0% |
| !!! | TCTTAATCTTTTAATTAAGA+AGG | + | chr5.1:5019739-5019758 | MS.gene20344:CDS | 15.0% |
| !!! | TGATCTTTAATCTTAATTTT+CGG | + | chr5.1:5020029-5020048 | MS.gene20344:intron | 15.0% |
| !! | AATCAAACTATTATTTGATG+TGG | + | chr5.1:5020538-5020557 | MS.gene20344:CDS | 20.0% |
| !! | ATTGTTAATTGTGTGATTAT+AGG | + | chr5.1:5020900-5020919 | MS.gene20344:intron | 20.0% |
| !! | TCATTCAAAATATTTGATCA+AGG | - | chr5.1:5018941-5018960 | None:intergenic | 20.0% |
| !! | TTGTTAATTGTGTGATTATA+GGG | + | chr5.1:5020901-5020920 | MS.gene20344:intron | 20.0% |
| !! | TTTAGCTACATAATAACATT+TGG | + | chr5.1:5019871-5019890 | MS.gene20344:intron | 20.0% |
| !!! | ATCATGTAGTTTATATGTTT+TGG | + | chr5.1:5018849-5018868 | MS.gene20344:intron | 20.0% |
| !!! | CTATTTTTATGTGTTGTTTT+TGG | + | chr5.1:5019184-5019203 | MS.gene20344:intron | 20.0% |
| !!! | TTAAAAAATTATAGTGGACA+TGG | - | chr5.1:5019364-5019383 | None:intergenic | 20.0% |
| !!! | TTCATTTTAATATCTCCAAA+TGG | + | chr5.1:5019296-5019315 | MS.gene20344:intron | 20.0% |
| !!! | TTTTAAACTAAAGAAAATCC+AGG | - | chr5.1:5019157-5019176 | None:intergenic | 20.0% |
| ! | AATATGAAAAGCTCTTGATA+AGG | + | chr5.1:5018794-5018813 | MS.gene20344:CDS | 25.0% |
| ! | ACATATAAACTACATGATCA+AGG | - | chr5.1:5018847-5018866 | None:intergenic | 25.0% |
| ! | ATCATATCGAAAAGTTCAAA+AGG | - | chr5.1:5019820-5019839 | None:intergenic | 25.0% |
| ! | GATCAAGGAGTAAATAAAAT+TGG | - | chr5.1:5018926-5018945 | None:intergenic | 25.0% |
| ! | TAATAATTACCAAGTAAGCT+TGG | - | chr5.1:5020625-5020644 | None:intergenic | 25.0% |
| ! | TACCAAAATTCTTTCCATAA+AGG | + | chr5.1:5019571-5019590 | MS.gene20344:intron | 25.0% |
| ! | TATGACAAATTGATCCTTTA+TGG | - | chr5.1:5019588-5019607 | None:intergenic | 25.0% |
| ! | TTTATTATGACCTTTGCTTA+AGG | + | chr5.1:5020859-5020878 | MS.gene20344:intron | 25.0% |
| !! | ATCCTTTATGGAAAGAATTT+TGG | - | chr5.1:5019576-5019595 | None:intergenic | 25.0% |
| !! | TACTAGTTTCAACATATATG+TGG | - | chr5.1:5018969-5018988 | None:intergenic | 25.0% |
| !! | TTTTATATAAGACACAAGGA+TGG | + | chr5.1:5020734-5020753 | MS.gene20344:CDS | 25.0% |
| !!! | CGTTTAAGAAATGTTTTGAA+GGG | + | chr5.1:5020314-5020333 | MS.gene20344:CDS | 25.0% |
| !!! | GCTTTTTTGATGAAATTTAC+AGG | + | chr5.1:5019661-5019680 | MS.gene20344:intron | 25.0% |
| !!! | TTTATGGAAAGAATTTTGGT+AGG | - | chr5.1:5019572-5019591 | None:intergenic | 25.0% |
| AAACTAAAGAAAATCCAGGT+TGG | - | chr5.1:5019153-5019172 | None:intergenic | 30.0% | |
| AAACTGAATTATTGCAACCA+CGG | - | chr5.1:5019274-5019293 | None:intergenic | 30.0% | |
| AAAGTTCAAAAGGAAAATGC+AGG | - | chr5.1:5019810-5019829 | None:intergenic | 30.0% | |
| AAATAGTAACCAAGCTTACT+TGG | + | chr5.1:5020613-5020632 | MS.gene20344:CDS | 30.0% | |
| AACTAAAGAAAATCCAGGTT+GGG | - | chr5.1:5019152-5019171 | None:intergenic | 30.0% | |
| AAGGCTTATATATCTTCTGA+TGG | + | chr5.1:5019758-5019777 | MS.gene20344:CDS | 30.0% | |
| AATGAATCTAAGTTACTTCG+AGG | + | chr5.1:5019082-5019101 | MS.gene20344:intron | 30.0% | |
| AGAAGGAATCTGTATAGTTT+GGG | + | chr5.1:5021240-5021259 | MS.gene20344:CDS | 30.0% | |
| AGCAAAATATATGTTGAGAG+AGG | + | chr5.1:5019048-5019067 | MS.gene20344:intron | 30.0% | |
| AGTTGTAAATGTTCAATGCA+AGG | + | chr5.1:5020511-5020530 | MS.gene20344:CDS | 30.0% | |
| AGTTTCAACATATATGTGGT+AGG | - | chr5.1:5018965-5018984 | None:intergenic | 30.0% | |
| ATATATCTTCTGATGGCAAA+TGG | + | chr5.1:5019765-5019784 | MS.gene20344:CDS | 30.0% | |
| ATGAATCTAAGTTACTTCGA+GGG | + | chr5.1:5019083-5019102 | MS.gene20344:intron | 30.0% | |
| CAAACATATACTGAACTTCA+TGG | - | chr5.1:5020657-5020676 | None:intergenic | 30.0% | |
| CAAGGAAAATTAACAAACCT+GGG | - | chr5.1:5018829-5018848 | None:intergenic | 30.0% | |
| GAATGAAATGGTTAAAAGAC+AGG | - | chr5.1:5019001-5019020 | None:intergenic | 30.0% | |
| GTAACTTAGATTCATTCAAG+AGG | - | chr5.1:5019078-5019097 | None:intergenic | 30.0% | |
| GTCTTCTGATGATAAATCAA+TGG | - | chr5.1:5021156-5021175 | None:intergenic | 30.0% | |
| GTCTTTAACATAGATCAAAG+AGG | - | chr5.1:5020240-5020259 | None:intergenic | 30.0% | |
| TACACATTATTGATGCCATT+TGG | - | chr5.1:5019314-5019333 | None:intergenic | 30.0% | |
| TCAAGGAAAATTAACAAACC+TGG | - | chr5.1:5018830-5018849 | None:intergenic | 30.0% | |
| TCAATGTTTAAAAGCTTCTG+TGG | + | chr5.1:5020796-5020815 | MS.gene20344:CDS | 30.0% | |
| TTCAAGCAATTTAGAAGTGA+AGG | + | chr5.1:5021125-5021144 | MS.gene20344:CDS | 30.0% | |
| TTGGTTACTATTTGTGTTGA+TGG | - | chr5.1:5020606-5020625 | None:intergenic | 30.0% | |
| TTGTTGAAATAAACTTCTGC+TGG | - | chr5.1:5019221-5019240 | None:intergenic | 30.0% | |
| ! | ATTTGTAGCCATGTTTTCTA+TGG | - | chr5.1:5021031-5021050 | None:intergenic | 30.0% |
| !! | GCGTTTAAGAAATGTTTTGA+AGG | + | chr5.1:5020313-5020332 | MS.gene20344:CDS | 30.0% |
| !! | GGAGTTTTATATAAGACACA+AGG | + | chr5.1:5020730-5020749 | MS.gene20344:intron | 30.0% |
| ACATTGAAGATCAGCAAGTA+CGG | - | chr5.1:5020174-5020193 | None:intergenic | 35.0% | |
| ATGTGATGTTGTTGAAGCTA+AGG | + | chr5.1:5020190-5020209 | MS.gene20344:CDS | 35.0% | |
| CATATACTGAACTTCATGGA+AGG | - | chr5.1:5020653-5020672 | None:intergenic | 35.0% | |
| CTTAACTACTCCTTAAGCAA+AGG | - | chr5.1:5020872-5020891 | None:intergenic | 35.0% | |
| GAATGTTCTTTGTCTATGAC+CGG | + | chr5.1:5019245-5019264 | MS.gene20344:intron | 35.0% | |
| GAGAAGGAATCTGTATAGTT+TGG | + | chr5.1:5021239-5021258 | MS.gene20344:CDS | 35.0% | |
| GATATCCACCATAGAAAACA+TGG | + | chr5.1:5021020-5021039 | MS.gene20344:CDS | 35.0% | |
| GGATCAAATCGAGAATGAAA+TGG | - | chr5.1:5019013-5019032 | None:intergenic | 35.0% | |
| GTGAGAACTAATTCCTCAAA+CGG | + | chr5.1:5020089-5020108 | MS.gene20344:CDS | 35.0% | |
| GTTATTAGTGCAAGAAGGAA+TGG | + | chr5.1:5019683-5019702 | MS.gene20344:CDS | 35.0% | |
| TAACATTAAGCCCATTCTCT+CGG | - | chr5.1:5020990-5021009 | None:intergenic | 35.0% | |
| TACAGGTTATTAGTGCAAGA+AGG | + | chr5.1:5019678-5019697 | MS.gene20344:intron | 35.0% | |
| TATACAGATTCCTTCTCACA+AGG | - | chr5.1:5021236-5021255 | None:intergenic | 35.0% | |
| TATGTTAAAGACTGCGATTC+TGG | + | chr5.1:5020248-5020267 | MS.gene20344:CDS | 35.0% | |
| TGACCTTTGTGTATGAAACA+GGG | + | chr5.1:5019494-5019513 | MS.gene20344:intron | 35.0% | |
| TTCCACATCACTCATCAAAA+TGG | + | chr5.1:5019911-5019930 | MS.gene20344:CDS | 35.0% | |
| TTGACCTTTGTGTATGAAAC+AGG | + | chr5.1:5019493-5019512 | MS.gene20344:intron | 35.0% | |
| ! | TCATTCTCGATTTGATCCAT+TGG | + | chr5.1:5019015-5019034 | MS.gene20344:intron | 35.0% |
| !! | AGGTCAAAAAGCATCAGAAT+TGG | - | chr5.1:5019480-5019499 | None:intergenic | 35.0% |
| !! | GGTCAAAAAGCATCAGAATT+GGG | - | chr5.1:5019479-5019498 | None:intergenic | 35.0% |
| !! | TTCCATTTTGATGAGTGATG+TGG | - | chr5.1:5019916-5019935 | None:intergenic | 35.0% |
| !!! | GTTTTCTATGGTGGATATCT+CGG | - | chr5.1:5021019-5021038 | None:intergenic | 35.0% |
| !!! | TTTTTTGAATGATCCCAACC+TGG | + | chr5.1:5019136-5019155 | MS.gene20344:intron | 35.0% |
| AAAAGCTTCTGTGGAGAGAA+GGG | + | chr5.1:5020805-5020824 | MS.gene20344:CDS | 40.0% | |
| ATCGGAAGTAAGCTTGAGAA+TGG | - | chr5.1:5020447-5020466 | None:intergenic | 40.0% | |
| ATGTTGTTGAAGCTAAGGTG+TGG | + | chr5.1:5020195-5020214 | MS.gene20344:CDS | 40.0% | |
| CAACAACCATAGAGTCTGTT+AGG | + | chr5.1:5021091-5021110 | MS.gene20344:CDS | 40.0% | |
| CAACCCTGTTTCATACACAA+AGG | - | chr5.1:5019500-5019519 | None:intergenic | 40.0% | |
| CTAACAGACTCTATGGTTGT+TGG | - | chr5.1:5021093-5021112 | None:intergenic | 40.0% | |
| CTGTCATGCATAGTGAAAGA+AGG | + | chr5.1:5020378-5020397 | MS.gene20344:CDS | 40.0% | |
| GACTGTCACTACAGTGTTAT+CGG | - | chr5.1:5020465-5020484 | None:intergenic | 40.0% | |
| GAGGATCAAACAGTTGGAAT+TGG | + | chr5.1:5021183-5021202 | MS.gene20344:CDS | 40.0% | |
| GATCAAACAGTTGGAATTGG+TGG | + | chr5.1:5021186-5021205 | MS.gene20344:CDS | 40.0% | |
| GGTATGCAATTTGACAGACA+TGG | + | chr5.1:5020559-5020578 | MS.gene20344:CDS | 40.0% | |
| TAAAAGCTTCTGTGGAGAGA+AGG | + | chr5.1:5020804-5020823 | MS.gene20344:CDS | 40.0% | |
| TATGCACAGAAGACAAGCAA+GGG | + | chr5.1:5020938-5020957 | MS.gene20344:CDS | 40.0% | |
| TCATATTCATCCGTACATGC+TGG | - | chr5.1:5018781-5018800 | None:intergenic | 40.0% | |
| TCGGAAGTAAGCTTGAGAAT+GGG | - | chr5.1:5020446-5020465 | None:intergenic | 40.0% | |
| TGTAGTGACAGTCCAGAATT+GGG | + | chr5.1:5020472-5020491 | MS.gene20344:CDS | 40.0% | |
| TTATCAGGAACCGATAGAGT+TGG | + | chr5.1:5020128-5020147 | MS.gene20344:CDS | 40.0% | |
| TTATGCACAGAAGACAAGCA+AGG | + | chr5.1:5020937-5020956 | MS.gene20344:CDS | 40.0% | |
| TTCTATGTAACAGACGTGAC+TGG | + | chr5.1:5021054-5021073 | MS.gene20344:CDS | 40.0% | |
| TTCTGATGGCAAATGGTTCA+TGG | + | chr5.1:5019772-5019791 | MS.gene20344:CDS | 40.0% | |
| ! | GTATTTTGCAACAGTCGCTT+GGG | + | chr5.1:5020054-5020073 | MS.gene20344:intron | 40.0% |
| ! | TCTCTGAGAATCCTCAATAG+TGG | - | chr5.1:5020276-5020295 | None:intergenic | 40.0% |
| ! | TGTAGCCATGTTTTCTATGG+TGG | - | chr5.1:5021028-5021047 | None:intergenic | 40.0% |
| ! | TGTATTTTGCAACAGTCGCT+TGG | + | chr5.1:5020053-5020072 | MS.gene20344:intron | 40.0% |
| ! | TTTGCTATAAGCATCGCCAA+TGG | - | chr5.1:5019034-5019053 | None:intergenic | 40.0% |
| !! | CTCTGGTTCTGAACTAATTG+GGG | - | chr5.1:5020762-5020781 | None:intergenic | 40.0% |
| !! | GCTCTGGTTCTGAACTAATT+GGG | - | chr5.1:5020763-5020782 | None:intergenic | 40.0% |
| !! | GGAACATAGACGTTCTAGAA+GGG | - | chr5.1:5019458-5019477 | None:intergenic | 40.0% |
| AACCTCTTTCTGCCCAATTC+TGG | - | chr5.1:5020487-5020506 | None:intergenic | 45.0% | |
| ATTAAGCCCATTCTCTCGGA+AGG | - | chr5.1:5020986-5021005 | None:intergenic | 45.0% | |
| ATTATTGCAACCACGGCAAC+CGG | - | chr5.1:5019267-5019286 | None:intergenic | 45.0% | |
| CGACAGAAGACCAACTCTAT+CGG | - | chr5.1:5020141-5020160 | None:intergenic | 45.0% | |
| CGATTCTGGATCCACTATTG+AGG | + | chr5.1:5020262-5020281 | MS.gene20344:CDS | 45.0% | |
| CTCACTGCGCTTGAATTATC+AGG | + | chr5.1:5020113-5020132 | MS.gene20344:CDS | 45.0% | |
| CTGTAGTGACAGTCCAGAAT+TGG | + | chr5.1:5020471-5020490 | MS.gene20344:CDS | 45.0% | |
| CTTCTGCCTAACAGACTCTA+TGG | - | chr5.1:5021100-5021119 | None:intergenic | 45.0% | |
| GAGAGAGAGGATCAAACAGT+TGG | + | chr5.1:5021177-5021196 | MS.gene20344:CDS | 45.0% | |
| GAGTCTGTTAGGCAGAAGAT+TGG | + | chr5.1:5021102-5021121 | MS.gene20344:CDS | 45.0% | |
| GATGGCAAATGGTTCATGGA+TGG | + | chr5.1:5019776-5019795 | MS.gene20344:CDS | 45.0% | |
| GTGCAGTGCTATGGTCTATT+GGG | + | chr5.1:5021208-5021227 | MS.gene20344:CDS | 45.0% | |
| TCATCAGAAGACAGAGAGAG+AGG | + | chr5.1:5021164-5021183 | MS.gene20344:CDS | 45.0% | |
| TCTATGGTTGTTGGATCAGC+TGG | - | chr5.1:5021084-5021103 | None:intergenic | 45.0% | |
| ! | GGGAACATAGACGTTCTAGA+AGG | - | chr5.1:5019459-5019478 | None:intergenic | 45.0% |
| !! | CGATAGAGTTGGTCTTCTGT+CGG | + | chr5.1:5020139-5020158 | MS.gene20344:CDS | 45.0% |
| !! | CGCTCTGGTTCTGAACTAAT+TGG | - | chr5.1:5020764-5020783 | None:intergenic | 45.0% |
| !! | AAATTATTAAAAAATTATAG+TGG | - | chr5.1:5019370-5019389 | None:intergenic | 5.0% |
| ATGCGAACCTTCCGAGAGAA+TGG | + | chr5.1:5020976-5020995 | MS.gene20344:CDS | 50.0% | |
| CAGAGTAGCAGTAGAGCACA+CGG | - | chr5.1:5019535-5019554 | None:intergenic | 50.0% | |
| CTCTACTGCTACTCTGGTCA+AGG | + | chr5.1:5019539-5019558 | MS.gene20344:CDS | 50.0% | |
| GCTAAGGTGTGGACTCACAA+TGG | + | chr5.1:5020206-5020225 | MS.gene20344:CDS | 50.0% | |
| GGTGCAGTGCTATGGTCTAT+TGG | + | chr5.1:5021207-5021226 | MS.gene20344:CDS | 50.0% | |
| GTCCAGAATTGGGCAGAAAG+AGG | + | chr5.1:5020482-5020501 | MS.gene20344:CDS | 50.0% | |
| TGAATTACGCGTTGTCGCTC+TGG | - | chr5.1:5020779-5020798 | None:intergenic | 50.0% | |
| TGATAAGGATGAGCACACCC+AGG | + | chr5.1:5018809-5018828 | MS.gene20344:CDS | 50.0% | |
| TGCGAACCTTCCGAGAGAAT+GGG | + | chr5.1:5020977-5020996 | MS.gene20344:CDS | 50.0% | |
| ! | CTATTGGGAGCCTTGTGAGA+AGG | + | chr5.1:5021223-5021242 | MS.gene20344:CDS | 50.0% |
| !! | GAATTGGTGGTGCAGTGCTA+TGG | + | chr5.1:5021199-5021218 | MS.gene20344:CDS | 50.0% |
| !! | TAGAGTTGGTCTTCTGTCGG+AGG | + | chr5.1:5020142-5020161 | MS.gene20344:CDS | 50.0% |
| AAGCGCAGTGAGACCGTTTG+AGG | - | chr5.1:5020105-5020124 | None:intergenic | 55.0% | |
| CGTGTGCTCTACTGCTACTC+TGG | + | chr5.1:5019533-5019552 | MS.gene20344:CDS | 55.0% | |
| TCGCTGATCGTGACTACGAG+AGG | + | chr5.1:5020417-5020436 | MS.gene20344:CDS | 55.0% | |
| TTGTCTATGACCGGTTGCCG+TGG | + | chr5.1:5019254-5019273 | MS.gene20344:intron | 55.0% | |
| !! | TGTGGAGAGAAGGGCATCTG+AGG | + | chr5.1:5020814-5020833 | MS.gene20344:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 5018769 | 5021284 | 5018769 | ID=MS.gene20344 |
| chr5.1 | mRNA | 5018769 | 5021284 | 5018769 | ID=MS.gene20344.t1;Parent=MS.gene20344 |
| chr5.1 | exon | 5018769 | 5018830 | 5018769 | ID=MS.gene20344.t1.exon1;Parent=MS.gene20344.t1 |
| chr5.1 | CDS | 5018769 | 5018830 | 5018769 | ID=cds.MS.gene20344.t1;Parent=MS.gene20344.t1 |
| chr5.1 | exon | 5019515 | 5019560 | 5019515 | ID=MS.gene20344.t1.exon2;Parent=MS.gene20344.t1 |
| chr5.1 | CDS | 5019515 | 5019560 | 5019515 | ID=cds.MS.gene20344.t1;Parent=MS.gene20344.t1 |
| chr5.1 | exon | 5019683 | 5019797 | 5019683 | ID=MS.gene20344.t1.exon3;Parent=MS.gene20344.t1 |
| chr5.1 | CDS | 5019683 | 5019797 | 5019683 | ID=cds.MS.gene20344.t1;Parent=MS.gene20344.t1 |
| chr5.1 | exon | 5019909 | 5019976 | 5019909 | ID=MS.gene20344.t1.exon4;Parent=MS.gene20344.t1 |
| chr5.1 | CDS | 5019909 | 5019976 | 5019909 | ID=cds.MS.gene20344.t1;Parent=MS.gene20344.t1 |
| chr5.1 | exon | 5020068 | 5020634 | 5020068 | ID=MS.gene20344.t1.exon5;Parent=MS.gene20344.t1 |
| chr5.1 | CDS | 5020068 | 5020634 | 5020068 | ID=cds.MS.gene20344.t1;Parent=MS.gene20344.t1 |
| chr5.1 | exon | 5020731 | 5020835 | 5020731 | ID=MS.gene20344.t1.exon6;Parent=MS.gene20344.t1 |
| chr5.1 | CDS | 5020731 | 5020835 | 5020731 | ID=cds.MS.gene20344.t1;Parent=MS.gene20344.t1 |
| chr5.1 | exon | 5020922 | 5021284 | 5020922 | ID=MS.gene20344.t1.exon7;Parent=MS.gene20344.t1 |
| chr5.1 | CDS | 5020922 | 5021284 | 5020922 | ID=cds.MS.gene20344.t1;Parent=MS.gene20344.t1 |
| Gene Sequence |
| Protein sequence |
