AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20414

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20414.t1 MTR_6g464280 89.877 326 31 2 1 325 1 325 0.0 592
MS.gene20414.t1 MTR_6g464320 86.930 329 42 1 1 328 1 329 0.0 591
MS.gene20414.t1 MTR_6g464510 69.325 326 95 4 2 325 5 327 1.83e-160 451
MS.gene20414.t1 MTR_1g102160 53.636 330 142 5 1 324 1 325 1.02e-115 338
MS.gene20414.t1 MTR_6g464120 56.369 314 132 4 4 316 8 317 2.77e-115 343
MS.gene20414.t1 MTR_1g102170 53.355 313 138 3 13 323 31 337 2.18e-114 335
MS.gene20414.t1 MTR_0007s0520 48.624 327 150 5 2 325 14 325 1.09e-98 294
MS.gene20414.t1 MTR_8g035520 48.308 325 153 5 8 325 9 325 9.72e-97 290
MS.gene20414.t1 MTR_8g035540 47.678 323 150 6 13 324 2 316 6.32e-95 285
MS.gene20414.t1 MTR_8g035500 36.050 319 191 5 13 324 5 317 5.24e-74 231
MS.gene20414.t1 MTR_1g111280 37.261 314 165 7 32 325 42 343 1.03e-54 182
MS.gene20414.t1 MTR_7g406880 37.455 275 151 7 35 293 44 313 1.89e-52 176
MS.gene20414.t1 MTR_0007s0480 52.047 171 78 3 158 325 2 171 5.74e-50 164
MS.gene20414.t1 MTR_6g065430 39.113 248 140 5 47 293 58 295 3.74e-49 167
MS.gene20414.t1 MTR_6g065400 33.871 310 189 6 25 325 32 334 2.02e-47 163
MS.gene20414.t1 MTR_6g065370 33.226 310 191 6 25 325 32 334 1.27e-45 158
MS.gene20414.t1 MTR_6g065120 34.727 311 186 7 25 325 33 336 2.51e-45 157
MS.gene20414.t1 MTR_6g065110 33.333 303 185 6 31 325 42 335 3.95e-45 157
MS.gene20414.t1 MTR_4g050140 33.648 318 190 10 20 327 12 318 8.69e-45 155
MS.gene20414.t1 MTR_7g107040 37.692 260 135 6 80 324 69 316 9.55e-43 150
MS.gene20414.t1 MTR_6g065270 37.083 240 136 5 25 252 30 266 1.06e-42 150
MS.gene20414.t1 MTR_1g012430 34.630 257 148 7 39 290 29 270 7.10e-41 145
MS.gene20414.t1 MTR_7g056207 34.007 297 176 8 39 328 67 350 1.99e-40 145
MS.gene20414.t1 MTR_4g086510 34.962 266 152 8 39 295 35 288 7.66e-40 142
MS.gene20414.t1 MTR_1g089310 38.983 236 126 7 60 293 89 308 1.30e-38 140
MS.gene20414.t1 MTR_1g089310 38.983 236 126 7 60 293 105 324 1.71e-38 140
MS.gene20414.t1 MTR_7g093950 34.118 255 146 6 53 293 68 314 2.37e-37 137
MS.gene20414.t1 MTR_6g065340 32.117 274 155 6 25 290 43 293 3.21e-37 136
MS.gene20414.t1 MTR_3g101420 31.420 331 192 9 9 325 6 315 2.32e-36 133
MS.gene20414.t1 MTR_4g086480 32.997 297 171 11 39 324 39 318 8.75e-36 132
MS.gene20414.t1 MTR_4g086470 33.852 257 150 8 39 290 38 279 2.28e-35 130
MS.gene20414.t1 MTR_1g082210 32.083 240 133 6 24 245 37 264 4.23e-33 125
MS.gene20414.t1 MTR_4g086540 29.126 309 170 7 28 326 34 303 3.26e-30 117
MS.gene20414.t1 MTR_3g012440 33.051 236 144 6 63 293 74 300 3.47e-30 117
MS.gene20414.t1 MTR_5g005920 28.065 310 183 12 33 324 43 330 4.14e-29 114
MS.gene20414.t1 MTR_1g105020 32.333 300 175 12 41 327 38 322 1.36e-27 110
MS.gene20414.t1 MTR_3g450680 28.571 315 194 10 27 324 31 331 2.96e-27 109
MS.gene20414.t1 MTR_5g005850 29.781 319 185 14 27 324 28 328 1.21e-25 105
MS.gene20414.t1 MTR_5g005900 29.348 276 161 12 22 279 18 277 9.17e-25 102
MS.gene20414.t1 MTR_6g022710 30.415 217 116 4 65 247 146 361 7.23e-24 101
MS.gene20414.t1 MTR_8g040860 27.812 320 191 12 25 324 29 328 1.24e-23 99.8
MS.gene20414.t1 MTR_7g051020 30.476 315 186 12 27 324 27 325 1.78e-23 99.0
MS.gene20414.t1 MTR_1g104930 30.909 275 162 10 27 290 27 284 1.38e-22 96.7
MS.gene20414.t1 MTR_1g104933 37.654 162 83 4 49 201 46 198 9.25e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20414.t1 AT5G62180 50.467 321 154 4 8 324 4 323 1.64e-110 325
MS.gene20414.t1 AT2G45600 43.558 326 161 6 8 324 4 315 5.69e-87 265
MS.gene20414.t1 AT2G45610 39.264 326 183 5 8 325 6 324 8.06e-77 238
MS.gene20414.t1 AT1G68620 35.738 305 180 7 2 303 15 306 1.81e-48 166
MS.gene20414.t1 AT5G16080 36.940 268 147 7 35 293 51 305 2.16e-48 166
MS.gene20414.t1 AT5G23530 33.657 309 185 7 22 324 32 326 5.58e-45 156
MS.gene20414.t1 AT5G06570 35.959 292 162 9 47 325 47 326 8.35e-39 140
MS.gene20414.t1 AT5G06570 35.959 292 162 9 47 325 47 326 8.35e-39 140
MS.gene20414.t1 AT5G06570 35.959 292 162 9 47 325 62 341 1.28e-38 140
MS.gene20414.t1 AT5G06570 35.959 292 162 9 47 325 62 341 1.28e-38 140
MS.gene20414.t1 AT1G19190 32.472 271 165 7 25 290 18 275 3.51e-37 135
MS.gene20414.t1 AT5G27320 33.564 289 159 8 22 293 35 307 5.67e-37 135
MS.gene20414.t1 AT3G63010 35.124 242 137 6 54 293 86 309 1.76e-35 132
MS.gene20414.t1 AT1G49640 36.747 166 102 2 40 205 34 196 5.91e-35 129
MS.gene20414.t1 AT3G48700 38.953 172 96 3 39 201 32 203 4.68e-33 125
MS.gene20414.t1 AT1G47480 30.037 273 171 9 39 306 35 292 3.26e-31 119
MS.gene20414.t1 AT1G49660 38.596 171 95 4 40 204 33 199 5.97e-31 119
MS.gene20414.t1 AT3G05120 31.597 288 172 7 20 293 33 309 8.61e-31 119
MS.gene20414.t1 AT3G48690 35.912 181 107 4 28 201 21 199 1.44e-30 118
MS.gene20414.t1 AT1G49650 36.957 184 106 5 26 203 74 253 1.25e-29 116
MS.gene20414.t1 AT5G14310 29.707 239 123 3 70 263 141 379 1.93e-27 112
MS.gene20414.t1 AT2G03550 34.078 179 106 3 28 201 21 192 8.65e-27 107
MS.gene20414.t1 AT3G27320 29.493 217 111 5 71 247 125 339 4.90e-24 102
MS.gene20414.t1 AT3G27320 29.493 217 111 5 71 247 157 371 6.26e-24 102

Find 72 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAGCCGTTGAAAATTCT+AGG 0.260130 6.4:-39696165 MS.gene20414:CDS
GGGGTAGAAGTTTGTTATTT+TGG 0.275515 6.4:+39696499 None:intergenic
TTGGTTGATGTTAAGATCTT+TGG 0.317136 6.4:+39696575 None:intergenic
TTCCATGGAAGAAAACAATA+AGG 0.321528 6.4:+39696478 None:intergenic
TGGAAGCATTGAGTTTGATT+AGG 0.366794 6.4:-39696311 MS.gene20414:CDS
AGAATAATCGAAGCCATGTT+TGG 0.408029 6.4:+39696547 None:intergenic
TATCAACGGTGGGGATCTAT+TGG 0.408604 6.4:-39695917 MS.gene20414:CDS
TCCATGGAAGAAAACAATAA+GGG 0.413790 6.4:+39696479 None:intergenic
TTAAGATCTTTGGTTAGAAC+AGG 0.420005 6.4:+39696585 None:intergenic
GCCGCTGGTAGCCGGTGCTC+CGG 0.427016 6.4:+39696348 None:intergenic
GTGTGTTAGTGATTTGTGTT+GGG 0.440638 6.4:-39696058 MS.gene20414:CDS
CATCATATGCCGCTGGTAGC+CGG 0.442477 6.4:+39696340 None:intergenic
TTGGATAAGATAAAGGATCA+TGG 0.456613 6.4:-39695958 MS.gene20414:CDS
GAAGCCATGTTTGGTTTGAT+TGG 0.466485 6.4:+39696556 None:intergenic
TGTGTGTTAGTGATTTGTGT+TGG 0.479150 6.4:-39696059 MS.gene20414:CDS
TCAACATCATTCCCAACCGT+TGG 0.482237 6.4:+39695988 None:intergenic
TAGTGATTTGTGTTGGGAGT+TGG 0.482769 6.4:-39696052 MS.gene20414:CDS
TGAGGCGACAACTGCTTCTA+CGG 0.486784 6.4:+39696389 None:intergenic
TTTCTAATGGGAAATAGTGC+TGG 0.493645 6.4:-39696240 MS.gene20414:CDS
ATTTCGAGTGAGTGTGTCGT+TGG 0.495284 6.4:+39696650 None:intergenic
GAAGGGTGTGGAGGTTGTCA+AGG 0.497086 6.4:-39695857 MS.gene20414:CDS
ATCGCCTCGCACCGGAGCAC+CGG 0.497130 6.4:-39696359 MS.gene20414:CDS
TTTCGAGTGAGTGTGTCGTT+GGG 0.500130 6.4:+39696651 None:intergenic
TAATGAGTTGGTGCAATTGA+TGG 0.508097 6.4:-39695884 MS.gene20414:CDS
GTGTGTCGTTGGGATTGTGT+TGG 0.512910 6.4:+39696661 None:intergenic
AGTATTGCAATCCAACGGTT+GGG 0.522243 6.4:-39695999 MS.gene20414:CDS
CAACTCAGACTCATACCTCT+TGG 0.523552 6.4:+39696110 None:intergenic
GAAATTTATTGAATTAGTGA+AGG 0.523975 6.4:-39695779 MS.gene20414:CDS
TGATCACGATCAACACCAAT+GGG 0.527278 6.4:+39696024 None:intergenic
TTGAGCCGTTGAAAATTCTA+GGG 0.528894 6.4:-39696164 MS.gene20414:CDS
ATTGATGGAGGAGAAGGGTG+TGG 0.536486 6.4:-39695869 MS.gene20414:CDS
CTACAATGAAGCCACTTCCA+TGG 0.538432 6.4:+39696463 None:intergenic
TGGATAAGATAAAGGATCAT+GGG 0.539321 6.4:-39695957 MS.gene20414:CDS
TGGGAGTTGGCATTACCCAT+TGG 0.544771 6.4:-39696039 MS.gene20414:CDS
GGAAGAGAAGTGTCTAATGA+AGG 0.545290 6.4:+39696606 None:intergenic
CTAACACACAAAGGAAAATG+AGG 0.549229 6.4:+39696072 None:intergenic
GGTACAATTGCTTATCATGC+AGG 0.551466 6.4:-39696216 MS.gene20414:CDS
GAGTATTGCAATCCAACGGT+TGG 0.555439 6.4:-39696000 MS.gene20414:CDS
AAATTTATTGAATTAGTGAA+GGG 0.555912 6.4:-39695778 MS.gene20414:CDS
GTAGCCGGTGCTCCGGTGCG+AGG 0.564152 6.4:+39696355 None:intergenic
GATAAAGGATCATGGGTGGA+AGG 0.566939 6.4:-39695950 MS.gene20414:CDS
AGCGGCATATGATGATGCTA+TGG 0.574650 6.4:-39696331 MS.gene20414:CDS
TGGTAAGGATCATTGATGGC+TGG 0.578886 6.4:+39696696 None:intergenic
TTAGGTCAAGTGATGATGAA+TGG 0.579905 6.4:-39696293 MS.gene20414:CDS
AGAAGTGTCTAATGAAGGTG+AGG 0.582650 6.4:+39696611 None:intergenic
TATTAGTGAGTATCAACGGT+GGG 0.583102 6.4:-39695927 MS.gene20414:CDS
ATGATCACGATCAACACCAA+TGG 0.589336 6.4:+39696023 None:intergenic
GGTTGATCGTGCTAATGAGT+TGG 0.592417 6.4:-39695896 MS.gene20414:CDS
GTGCAATTGATGGAGGAGAA+GGG 0.602437 6.4:-39695874 MS.gene20414:CDS
TAAGGATCATTGATGGCTGG+TGG 0.603435 6.4:+39696699 None:intergenic
GGTGCAATTGATGGAGGAGA+AGG 0.607957 6.4:-39695875 MS.gene20414:CDS
CTAATGGGAAATAGTGCTGG+AGG 0.608556 6.4:-39696237 MS.gene20414:CDS
ACCGGAGCACCGGCTACCAG+CGG 0.609410 6.4:-39696349 MS.gene20414:CDS
GGATCATTGATGGCTGGTGG+TGG 0.614626 6.4:+39696702 None:intergenic
ATAGCATCATCATATGCCGC+TGG 0.614736 6.4:+39696333 None:intergenic
CCATGGAAGAAAACAATAAG+GGG 0.615760 6.4:+39696480 None:intergenic
AGTCGATTATCGCCTCGCAC+CGG 0.617431 6.4:-39696367 MS.gene20414:CDS
TCAACCAATCAAACCAAACA+TGG 0.620670 6.4:-39696560 MS.gene20414:CDS
CACAAATCACTAACACACAA+AGG 0.622904 6.4:+39696063 None:intergenic
GTATTGGTAAGGATCATTGA+TGG 0.630210 6.4:+39696692 None:intergenic
GATGGAGGAGAAGGGTGTGG+AGG 0.638171 6.4:-39695866 MS.gene20414:CDS
AAGGTATTAGTGAGTATCAA+CGG 0.648175 6.4:-39695931 MS.gene20414:CDS
TGGCAAAGTTTGATTAGACA+TGG 0.655064 6.4:+39696722 None:intergenic
ATAAGATAAAGGATCATGGG+TGG 0.660965 6.4:-39695954 MS.gene20414:CDS
TCATGAGTATTGCAATCCAA+CGG 0.662201 6.4:-39696004 MS.gene20414:CDS
TCTAATGAAGGTGAGGTGTG+TGG 0.664418 6.4:+39696618 None:intergenic
ATGACTCTAATCATTGAACA+TGG 0.670584 6.4:+39695747 None:intergenic
ATTAGTGAGTATCAACGGTG+GGG 0.683373 6.4:-39695926 MS.gene20414:CDS
AAAATTGTGGAATATTGTGG+AGG 0.687404 6.4:+39696431 None:intergenic
TGAGTTGGTGCAATTGATGG+AGG 0.712978 6.4:-39695881 MS.gene20414:CDS
TGCGAGGCGATAATCGACTG+AGG 0.721068 6.4:+39696371 None:intergenic
GTATTAGTGAGTATCAACGG+TGG 0.735591 6.4:-39695928 MS.gene20414:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATTGAATTAGTGAA+GGG - chr6.4:39696695-39696714 MS.gene20414:CDS 15.0%
!!! TTTTCAAAATGTTTTCTAAT+GGG - chr6.4:39696221-39696240 MS.gene20414:CDS 15.0%
!! GAAATTTATTGAATTAGTGA+AGG - chr6.4:39696694-39696713 MS.gene20414:CDS 20.0%
!! TGAAAAATTGGATAAGATAA+AGG - chr6.4:39696508-39696527 MS.gene20414:CDS 20.0%
!!! ATAAATTTCTTTGCTTTTGA+TGG + chr6.4:39696683-39696702 None:intergenic 20.0%
!!! CTTTTCAAAATGTTTTCTAA+TGG - chr6.4:39696220-39696239 MS.gene20414:CDS 20.0%
! ACAAAAATTGTGGAATATTG+TGG + chr6.4:39696048-39696067 None:intergenic 25.0%
!! GAATGATGTTGATGAAAAAT+TGG - chr6.4:39696496-39696515 MS.gene20414:CDS 25.0%
!!! TTTGAAGTTGTTGCTTTTTT+AGG + chr6.4:39695954-39695973 None:intergenic 25.0%
AAAATTGTGGAATATTGTGG+AGG + chr6.4:39696045-39696064 None:intergenic 30.0%
TCCATGGAAGAAAACAATAA+GGG + chr6.4:39695997-39696016 None:intergenic 30.0%
TGGATAAGATAAAGGATCAT+GGG - chr6.4:39696516-39696535 MS.gene20414:CDS 30.0%
TTAAGATCTTTGGTTAGAAC+AGG + chr6.4:39695891-39695910 None:intergenic 30.0%
TTCCATGGAAGAAAACAATA+AGG + chr6.4:39695998-39696017 None:intergenic 30.0%
TTGGATAAGATAAAGGATCA+TGG - chr6.4:39696515-39696534 MS.gene20414:CDS 30.0%
! AAGGTATTAGTGAGTATCAA+CGG - chr6.4:39696542-39696561 MS.gene20414:CDS 30.0%
! ATCAACCCTAGAATTTTCAA+CGG + chr6.4:39696317-39696336 None:intergenic 30.0%
! TTCAAGAAGATGGTTTTCAT+GGG - chr6.4:39696642-39696661 MS.gene20414:CDS 30.0%
! TTGGTTGATGTTAAGATCTT+TGG + chr6.4:39695901-39695920 None:intergenic 30.0%
! TTTCAAGAAGATGGTTTTCA+TGG - chr6.4:39696641-39696660 MS.gene20414:CDS 30.0%
!!! ATATTGCGTCAACCATTTTT+TGG - chr6.4:39696335-39696354 MS.gene20414:CDS 30.0%
AGAATAATCGAAGCCATGTT+TGG + chr6.4:39695929-39695948 None:intergenic 35.0%
ATAAGATAAAGGATCATGGG+TGG - chr6.4:39696519-39696538 MS.gene20414:CDS 35.0%
CACAAATCACTAACACACAA+AGG + chr6.4:39696413-39696432 None:intergenic 35.0%
CCATGGAAGAAAACAATAAG+GGG + chr6.4:39695996-39696015 None:intergenic 35.0%
CCATTTCAGCACAAAAATTG+TGG + chr6.4:39696058-39696077 None:intergenic 35.0%
CTAACACACAAAGGAAAATG+AGG + chr6.4:39696404-39696423 None:intergenic 35.0%
TATTAGTGAGTATCAACGGT+GGG - chr6.4:39696546-39696565 MS.gene20414:CDS 35.0%
TCAACCAATCAAACCAAACA+TGG - chr6.4:39695913-39695932 MS.gene20414:CDS 35.0%
TTGAGCCGTTGAAAATTCTA+GGG - chr6.4:39696309-39696328 MS.gene20414:CDS 35.0%
TTTCTAATGGGAAATAGTGC+TGG - chr6.4:39696233-39696252 MS.gene20414:CDS 35.0%
! ATTGTTTTCTTCCATGGAAG+TGG - chr6.4:39695999-39696018 MS.gene20414:CDS 35.0%
! CAATTTTTGTGCTGAAATGG+CGG - chr6.4:39696058-39696077 MS.gene20414:CDS 35.0%
! CCACAATTTTTGTGCTGAAA+TGG - chr6.4:39696055-39696074 MS.gene20414:CDS 35.0%
! GTATTGGTAAGGATCATTGA+TGG + chr6.4:39695784-39695803 None:intergenic 35.0%
! GTGTGTTAGTGATTTGTGTT+GGG - chr6.4:39696415-39696434 MS.gene20414:CDS 35.0%
! TCAAGAAGATGGTTTTCATG+GGG - chr6.4:39696643-39696662 MS.gene20414:CDS 35.0%
! TCATGAGTATTGCAATCCAA+CGG - chr6.4:39696469-39696488 MS.gene20414:CDS 35.0%
! TGTGTGTTAGTGATTTGTGT+TGG - chr6.4:39696414-39696433 MS.gene20414:CDS 35.0%
! TTAGGTCAAGTGATGATGAA+TGG - chr6.4:39696180-39696199 MS.gene20414:CDS 35.0%
!! GTCAAGGATTTTCAAGAAGA+TGG - chr6.4:39696632-39696651 MS.gene20414:CDS 35.0%
!! TAATGAGTTGGTGCAATTGA+TGG - chr6.4:39696589-39696608 MS.gene20414:CDS 35.0%
!! TGGAAGCATTGAGTTTGATT+AGG - chr6.4:39696162-39696181 MS.gene20414:CDS 35.0%
!!! GGGGTAGAAGTTTGTTATTT+TGG + chr6.4:39695977-39695996 None:intergenic 35.0%
!!! TGGATTTTGAGGTATTGGTA+AGG + chr6.4:39695795-39695814 None:intergenic 35.0%
!!! TGTGTTGGATTTTGAGGTAT+TGG + chr6.4:39695800-39695819 None:intergenic 35.0%
AGTATTGCAATCCAACGGTT+GGG - chr6.4:39696474-39696493 MS.gene20414:CDS 40.0%
ATGATCACGATCAACACCAA+TGG + chr6.4:39696453-39696472 None:intergenic 40.0%
ATTAGTGAGTATCAACGGTG+GGG - chr6.4:39696547-39696566 MS.gene20414:CDS 40.0%
CTTGAGCCGTTGAAAATTCT+AGG - chr6.4:39696308-39696327 MS.gene20414:CDS 40.0%
GGTACAATTGCTTATCATGC+AGG - chr6.4:39696257-39696276 MS.gene20414:CDS 40.0%
GTATTAGTGAGTATCAACGG+TGG - chr6.4:39696545-39696564 MS.gene20414:CDS 40.0%
TGATCACGATCAACACCAAT+GGG + chr6.4:39696452-39696471 None:intergenic 40.0%
! CCCCTTATTGTTTTCTTCCA+TGG - chr6.4:39695993-39696012 MS.gene20414:CDS 40.0%
! TAGTGATTTGTGTTGGGAGT+TGG - chr6.4:39696421-39696440 MS.gene20414:CDS 40.0%
! TGGGATTGTGTTGGATTTTG+AGG + chr6.4:39695806-39695825 None:intergenic 40.0%
!! AGAAGTGTCTAATGAAGGTG+AGG + chr6.4:39695865-39695884 None:intergenic 40.0%
!! GAAGCCATGTTTGGTTTGAT+TGG + chr6.4:39695920-39695939 None:intergenic 40.0%
!! GGAAGAGAAGTGTCTAATGA+AGG + chr6.4:39695870-39695889 None:intergenic 40.0%
!!! TGCGTCAACCATTTTTTGGT+GGG - chr6.4:39696339-39696358 MS.gene20414:CDS 40.0%
!!! TTGCGTCAACCATTTTTTGG+TGG - chr6.4:39696338-39696357 MS.gene20414:CDS 40.0%
ATAGCATCATCATATGCCGC+TGG + chr6.4:39696143-39696162 None:intergenic 45.0%
CAACTCAGACTCATACCTCT+TGG + chr6.4:39696366-39696385 None:intergenic 45.0%
CTACAATGAAGCCACTTCCA+TGG + chr6.4:39696013-39696032 None:intergenic 45.0%
CTCTTGGTCCCACCAAAAAA+TGG + chr6.4:39696350-39696369 None:intergenic 45.0%
GATAAAGGATCATGGGTGGA+AGG - chr6.4:39696523-39696542 MS.gene20414:CDS 45.0%
GGTTGATCGTGCTAATGAGT+TGG - chr6.4:39696577-39696596 MS.gene20414:CDS 45.0%
GTGCAATTGATGGAGGAGAA+GGG - chr6.4:39696599-39696618 MS.gene20414:CDS 45.0%
TATCAACGGTGGGGATCTAT+TGG - chr6.4:39696556-39696575 MS.gene20414:CDS 45.0%
TCAACATCATTCCCAACCGT+TGG + chr6.4:39696488-39696507 None:intergenic 45.0%
TCTAATGAAGGTGAGGTGTG+TGG + chr6.4:39695858-39695877 None:intergenic 45.0%
! AGCGGCATATGATGATGCTA+TGG - chr6.4:39696142-39696161 MS.gene20414:CDS 45.0%
! ATTTCGAGTGAGTGTGTCGT+TGG + chr6.4:39695826-39695845 None:intergenic 45.0%
! CTAATGGGAAATAGTGCTGG+AGG - chr6.4:39696236-39696255 MS.gene20414:CDS 45.0%
! GAGTATTGCAATCCAACGGT+TGG - chr6.4:39696473-39696492 MS.gene20414:CDS 45.0%
! TAAGGATCATTGATGGCTGG+TGG + chr6.4:39695777-39695796 None:intergenic 45.0%
! TGGTAAGGATCATTGATGGC+TGG + chr6.4:39695780-39695799 None:intergenic 45.0%
! TTTCGAGTGAGTGTGTCGTT+GGG + chr6.4:39695825-39695844 None:intergenic 45.0%
!! TGAGTTGGTGCAATTGATGG+AGG - chr6.4:39696592-39696611 MS.gene20414:CDS 45.0%
!!! CATTTTTTGGTGGGACCAAG+AGG - chr6.4:39696348-39696367 MS.gene20414:CDS 45.0%
ATTGATGGAGGAGAAGGGTG+TGG - chr6.4:39696604-39696623 MS.gene20414:CDS 50.0%
GGTGCAATTGATGGAGGAGA+AGG - chr6.4:39696598-39696617 MS.gene20414:CDS 50.0%
TGAGGCGACAACTGCTTCTA+CGG + chr6.4:39696087-39696106 None:intergenic 50.0%
TGGGAGTTGGCATTACCCAT+TGG - chr6.4:39696434-39696453 MS.gene20414:CDS 50.0%
! GTGTGTCGTTGGGATTGTGT+TGG + chr6.4:39695815-39695834 None:intergenic 50.0%
AGTCGATTATCGCCTCGCAC+CGG - chr6.4:39696106-39696125 MS.gene20414:CDS 55.0%
CATCATATGCCGCTGGTAGC+CGG + chr6.4:39696136-39696155 None:intergenic 55.0%
TGCGAGGCGATAATCGACTG+AGG + chr6.4:39696105-39696124 None:intergenic 55.0%
! GAAGGGTGTGGAGGTTGTCA+AGG - chr6.4:39696616-39696635 MS.gene20414:CDS 55.0%
! GGATCATTGATGGCTGGTGG+TGG + chr6.4:39695774-39695793 None:intergenic 55.0%
! GATGGAGGAGAAGGGTGTGG+AGG - chr6.4:39696607-39696626 MS.gene20414:CDS 60.0%
ATCGCCTCGCACCGGAGCAC+CGG - chr6.4:39696114-39696133 MS.gene20414:CDS 70.0%
!! ACCGGAGCACCGGCTACCAG+CGG - chr6.4:39696124-39696143 MS.gene20414:CDS 70.0%
GCCGCTGGTAGCCGGTGCTC+CGG + chr6.4:39696128-39696147 None:intergenic 75.0%
GTAGCCGGTGCTCCGGTGCG+AGG + chr6.4:39696121-39696140 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 39695753 39696742 39695753 ID=MS.gene20414
chr6.4 mRNA 39695753 39696742 39695753 ID=MS.gene20414.t1;Parent=MS.gene20414
chr6.4 exon 39695753 39696742 39695753 ID=MS.gene20414.t1.exon1;Parent=MS.gene20414.t1
chr6.4 CDS 39695753 39696742 39695753 ID=cds.MS.gene20414.t1;Parent=MS.gene20414.t1
Gene Sequence

>MS.gene20414

ATGTCTAATCAAACTTTGCCACCACCAGCCATCAATGATCCTTACCAATACCTCAAAATCCAACACAATCCCAACGACACACTCACTCGAAATCTTGAAGATCCACACACCTCACCTTCATTAGACACTTCTCTTCCTGTTCTAACCAAAGATCTTAACATCAACCAATCAAACCAAACATGGCTTCGATTATTCTTACCTAAAAAAGCAACAACTTCAAACCAAAATAACAAACTTCTACCCCTTATTGTTTTCTTCCATGGAAGTGGCTTCATTGTAGCAAGTGCAGCCTCCACAATATTCCACAATTTTTGTGCTGAAATGGCGGACACCGTAGAAGCAGTTGTCGCCTCAGTCGATTATCGCCTCGCACCGGAGCACCGGCTACCAGCGGCATATGATGATGCTATGGAAGCATTGAGTTTGATTAGGTCAAGTGATGATGAATGGTTGACTAAATATGTTGACTTTTCAAAATGTTTTCTAATGGGAAATAGTGCTGGAGGTACAATTGCTTATCATGCAGGACTACGTGTAGTTGAAAAGATGAATGATCTTGAGCCGTTGAAAATTCTAGGGTTGATATTGCGTCAACCATTTTTTGGTGGGACCAAGAGGTATGAGTCTGAGTTGAGACTTGAGAATGATCCTCATTTTCCTTTGTGTGTTAGTGATTTGTGTTGGGAGTTGGCATTACCCATTGGTGTTGATCGTGATCATGAGTATTGCAATCCAACGGTTGGGAATGATGTTGATGAAAAATTGGATAAGATAAAGGATCATGGGTGGAAGGTATTAGTGAGTATCAACGGTGGGGATCTATTGGTTGATCGTGCTAATGAGTTGGTGCAATTGATGGAGGAGAAGGGTGTGGAGGTTGTCAAGGATTTTCAAGAAGATGGTTTTCATGGGGTTGAATTTTCTGAGCCATCAAAAGCAAAGAAATTTATTGAATTAGTGAAGGGCTTCATTTCCATGTTCAATGATTAG
Protein sequence

>MS.gene20414.t1

MSNQTLPPPAINDPYQYLKIQHNPNDTLTRNLEDPHTSPSLDTSLPVLTKDLNINQSNQTWLRLFLPKKATTSNQNNKLLPLIVFFHGSGFIVASAASTIFHNFCAEMADTVEAVVASVDYRLAPEHRLPAAYDDAMEALSLIRSSDDEWLTKYVDFSKCFLMGNSAGGTIAYHAGLRVVEKMNDLEPLKILGLILRQPFFGGTKRYESELRLENDPHFPLCVSDLCWELALPIGVDRDHEYCNPTVGNDVDEKLDKIKDHGWKVLVSINGGDLLVDRANELVQLMEEKGVEVVKDFQEDGFHGVEFSEPSKAKKFIELVKGFISMFND