AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019398

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019398.t1 MTR_8g035500 96.238 319 12 0 1 319 1 319 0.0 650
MS.gene019398.t1 MTR_8g035540 40.881 318 182 4 5 318 2 317 2.52e-90 273
MS.gene019398.t1 MTR_8g035520 42.138 318 178 4 2 317 11 324 5.11e-90 272
MS.gene019398.t1 MTR_6g464510 39.375 320 180 5 4 317 15 326 3.36e-83 254
MS.gene019398.t1 MTR_6g464280 36.250 320 190 5 5 317 12 324 3.55e-73 229
MS.gene019398.t1 MTR_6g464320 35.312 320 193 6 5 317 13 325 6.21e-72 226
MS.gene019398.t1 MTR_1g102170 37.975 316 181 5 2 312 28 333 1.97e-71 224
MS.gene019398.t1 MTR_1g102160 37.037 324 187 6 4 318 11 326 2.32e-71 224
MS.gene019398.t1 MTR_6g464120 37.821 312 182 6 5 312 17 320 5.91e-68 221
MS.gene019398.t1 MTR_0007s0520 34.936 312 183 8 15 317 24 324 2.93e-63 203
MS.gene019398.t1 MTR_7g406880 32.407 324 198 8 12 317 29 349 1.69e-52 176
MS.gene019398.t1 MTR_6g065110 35.206 267 154 6 29 287 48 303 5.57e-46 159
MS.gene019398.t1 MTR_1g111280 31.818 308 188 10 12 309 34 329 6.04e-45 156
MS.gene019398.t1 MTR_6g065270 32.414 290 176 5 10 287 23 304 9.24e-44 153
MS.gene019398.t1 MTR_6g065120 33.333 282 167 7 17 287 33 304 9.61e-43 150
MS.gene019398.t1 MTR_6g065400 31.633 294 183 6 32 317 50 333 2.19e-41 147
MS.gene019398.t1 MTR_6g065370 30.952 294 185 6 32 317 50 333 2.85e-41 147
MS.gene019398.t1 MTR_7g107040 31.447 318 192 11 12 318 15 317 6.23e-41 145
MS.gene019398.t1 MTR_6g065430 33.213 277 168 7 17 287 31 296 8.88e-39 140
MS.gene019398.t1 MTR_6g065340 30.351 313 179 9 17 317 43 328 1.23e-36 134
MS.gene019398.t1 MTR_4g050140 28.214 280 189 5 44 317 42 315 7.08e-36 132
MS.gene019398.t1 MTR_4g086510 31.225 253 164 4 33 283 35 279 1.19e-34 129
MS.gene019398.t1 MTR_1g082210 31.613 310 178 10 8 296 25 321 8.74e-34 127
MS.gene019398.t1 MTR_3g012440 30.627 271 174 5 57 317 74 340 5.95e-33 124
MS.gene019398.t1 MTR_0007s0480 36.471 170 98 4 157 317 2 170 8.90e-33 119
MS.gene019398.t1 MTR_4g086480 30.375 293 183 8 33 317 39 318 2.26e-31 120
MS.gene019398.t1 MTR_7g056207 31.148 244 156 5 43 283 77 311 2.33e-31 120
MS.gene019398.t1 MTR_3g101420 29.537 281 170 8 12 283 15 276 3.69e-31 119
MS.gene019398.t1 MTR_7g093950 28.981 314 187 10 8 296 25 327 1.06e-30 119
MS.gene019398.t1 MTR_1g089310 31.164 292 166 10 8 279 25 301 6.14e-30 116
MS.gene019398.t1 MTR_4g086470 31.225 253 161 5 33 283 38 279 7.24e-30 116
MS.gene019398.t1 MTR_1g089310 31.164 292 166 10 8 279 41 317 8.01e-30 116
MS.gene019398.t1 MTR_5g005920 29.893 281 183 9 17 290 26 299 1.03e-29 115
MS.gene019398.t1 MTR_4g086540 28.713 303 177 8 17 314 31 299 1.35e-28 112
MS.gene019398.t1 MTR_1g012430 34.199 231 128 7 17 241 16 228 5.25e-27 108
MS.gene019398.t1 MTR_1g105020 31.475 305 179 12 17 301 21 315 6.01e-26 105
MS.gene019398.t1 MTR_5g005900 29.924 264 167 8 17 271 22 276 9.01e-26 105
MS.gene019398.t1 MTR_5g005850 29.808 312 191 11 17 314 26 323 6.01e-25 102
MS.gene019398.t1 MTR_8g040860 29.221 308 195 11 17 314 29 323 1.11e-23 99.4
MS.gene019398.t1 MTR_3g450680 31.203 266 159 10 17 271 29 281 1.49e-23 99.4
MS.gene019398.t1 MTR_6g022710 28.906 256 145 7 64 284 147 400 1.58e-23 100
MS.gene019398.t1 MTR_7g051020 31.136 273 172 11 17 283 25 287 1.60e-21 93.6
MS.gene019398.t1 MTR_1g104930 30.769 273 170 11 17 283 25 284 1.61e-20 90.5
MS.gene019398.t1 MTR_1g104933 30.488 246 153 8 43 283 46 278 7.98e-18 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019398.t1 AT2G45610 52.698 315 148 1 4 317 9 323 8.66e-124 358
MS.gene019398.t1 AT2G45600 40.123 324 166 8 5 317 9 315 1.23e-81 251
MS.gene019398.t1 AT5G62180 35.404 322 194 6 5 318 9 324 1.72e-68 217
MS.gene019398.t1 AT1G68620 32.567 261 163 6 17 275 36 285 3.83e-38 138
MS.gene019398.t1 AT5G16080 30.142 282 182 8 32 307 54 326 1.51e-33 126
MS.gene019398.t1 AT5G23530 29.617 287 180 8 16 296 34 304 4.73e-33 125
MS.gene019398.t1 AT5G06570 33.080 263 162 8 40 297 46 299 1.87e-32 123
MS.gene019398.t1 AT5G06570 33.080 263 162 8 40 297 46 299 1.87e-32 123
MS.gene019398.t1 AT5G06570 33.080 263 162 8 40 297 61 314 2.38e-32 123
MS.gene019398.t1 AT5G06570 33.080 263 162 8 40 297 61 314 2.38e-32 123
MS.gene019398.t1 AT5G27320 29.032 310 185 10 8 296 25 320 1.76e-30 118
MS.gene019398.t1 AT3G63010 29.470 302 176 10 16 296 37 322 1.70e-29 115
MS.gene019398.t1 AT3G05120 29.470 302 175 10 8 287 25 310 2.57e-28 112
MS.gene019398.t1 AT1G19190 28.571 266 167 7 26 283 25 275 7.11e-27 108
MS.gene019398.t1 AT3G48690 29.286 280 180 7 12 283 13 282 2.96e-26 106
MS.gene019398.t1 AT1G47480 28.676 272 174 7 12 281 16 269 3.22e-26 106
MS.gene019398.t1 AT5G14310 29.688 256 143 5 65 284 142 396 1.22e-25 106
MS.gene019398.t1 AT2G03550 28.231 294 195 6 29 317 28 310 6.06e-25 102
MS.gene019398.t1 AT3G27320 29.278 263 148 7 58 284 118 378 8.22e-24 101
MS.gene019398.t1 AT3G27320 29.278 263 148 7 58 284 150 410 1.33e-23 100
MS.gene019398.t1 AT1G49650 33.511 188 115 4 17 201 74 254 1.67e-23 99.8
MS.gene019398.t1 AT1G49660 27.778 270 182 6 17 282 18 278 2.32e-23 98.6
MS.gene019398.t1 AT1G49640 31.319 182 118 3 22 202 21 196 3.68e-23 97.8
MS.gene019398.t1 AT3G48700 28.431 204 137 4 33 230 32 232 6.36e-22 94.7

Find 105 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAAAATGTCAAGAAATT+AGG 0.125161 8.2:-63795221 MS.gene019398:CDS
CCATCGAGGTGTTATCTTTA+TGG 0.162050 8.2:-63796081 MS.gene019398:CDS
ATCATCAATTGTTATGTCTT+TGG 0.205110 8.2:+63796419 None:intergenic
CTCAATCCAAAGTGGTTATA+TGG 0.248180 8.2:+63796531 None:intergenic
TTAGGGAGGTGTCTTGTTAT+TGG 0.287339 8.2:-63795203 MS.gene019398:CDS
TTCGGGGTTCGCGTCGGTTG+AGG 0.309991 8.2:+63796467 None:intergenic
TGGAAAATGTCAAGAAATTA+GGG 0.314810 8.2:-63795220 MS.gene019398:CDS
AAAGGACGGCCTCGGAAATA+AGG 0.329749 8.2:-63795942 MS.gene019398:intron
TAGGGAGGTGTCTTGTTATT+GGG 0.337672 8.2:-63795202 MS.gene019398:CDS
GTCGGTTGAGGGTGTCTTGT+AGG 0.384926 8.2:+63796479 None:intergenic
CGCGAACCCCGAACCTTCAC+CGG 0.388207 8.2:-63796457 MS.gene019398:CDS
ATATTGATTTACTTTCATAA+TGG 0.392883 8.2:-63796321 MS.gene019398:CDS
ATATGGACTTAGAGCCTCTA+AGG 0.394329 8.2:-63796008 MS.gene019398:CDS
TCGGGGTTCGCGTCGGTTGA+GGG 0.394609 8.2:+63796468 None:intergenic
AATGGCAAAAGGGCCACATT+TGG 0.397086 8.2:-63795240 MS.gene019398:CDS
GGCCATGCAGATTGGAGATA+TGG 0.411498 8.2:-63796025 MS.gene019398:CDS
GCCACAGTATTGTCGTTTGA+TGG 0.415106 8.2:+63796354 None:intergenic
ACAAGGCCACTAATCCTTAG+AGG 0.416771 8.2:+63795994 None:intergenic
GACTTTGCCCTTACCAGTGT+TGG 0.417668 8.2:-63795324 MS.gene019398:CDS
TTACTTTCATAATGGTGGTT+GGG 0.428229 8.2:-63796313 MS.gene019398:CDS
ATAACCGCACTAGCTCTAGT+AGG 0.431582 8.2:+63795059 None:intergenic
TTTACTTTCATAATGGTGGT+TGG 0.431824 8.2:-63796314 MS.gene019398:CDS
TTTGATCCATATAACCACTT+TGG 0.433703 8.2:-63796537 MS.gene019398:CDS
AGGTGTCTTGTTATTGGGTA+TGG 0.434253 8.2:-63795197 MS.gene019398:CDS
TATCTTTATGGATGTGGTTG+TGG 0.434607 8.2:-63796069 MS.gene019398:CDS
TGTCTCTGTCGCCTTTCGTT+GGG 0.438448 8.2:-63796217 MS.gene019398:CDS
CTCAACCATTGCTCTCCATC+AGG 0.438600 8.2:+63796117 None:intergenic
TTATGAAAGTAAATCAATAT+CGG 0.442305 8.2:+63796324 None:intergenic
TCGAGCATCTTGATATTGTC+CGG 0.444661 8.2:+63796176 None:intergenic
ATCCTAAGCCCGGCTGATGC+TGG 0.450512 8.2:-63796288 MS.gene019398:CDS
TTGTCTCTGTCGCCTTTCGT+TGG 0.451494 8.2:-63796218 MS.gene019398:CDS
CCATTGGATTGCAATACCTA+TGG 0.454707 8.2:+63795258 None:intergenic
TATTGCAATCCAATGGCAAA+AGG 0.462861 8.2:-63795251 MS.gene019398:CDS
TGAAGCTAGGTTTGATCCTG+TGG 0.468258 8.2:-63795108 MS.gene019398:CDS
TTAGAGCCTCTAAGGATTAG+TGG 0.468499 8.2:-63796000 MS.gene019398:CDS
TTCAATACGGCCATGCAGAT+TGG 0.469246 8.2:-63796033 MS.gene019398:CDS
TTATGGGTACCAGCATCAGC+CGG 0.476238 8.2:+63796279 None:intergenic
GGGGTTCCACAATATTGATA+TGG 0.477353 8.2:-63795087 MS.gene019398:CDS
TACCAGCATCAGCCGGGCTT+AGG 0.478525 8.2:+63796286 None:intergenic
GCGACAGAGACAACAATACT+AGG 0.481339 8.2:+63796228 None:intergenic
GAGCAATGGTTGAGAGACTA+TGG 0.482302 8.2:-63796108 MS.gene019398:CDS
GCGAACCCCGAACCTTCACC+GGG 0.488799 8.2:-63796456 MS.gene019398:CDS
CATCATGTCCAACACTGGTA+AGG 0.489057 8.2:+63795316 None:intergenic
AGGTGTTATCTTTATGGATG+TGG 0.490354 8.2:-63796075 MS.gene019398:CDS
GTTGGTCAAATGTGGGGTCC+AGG 0.492083 8.2:-63795132 MS.gene019398:CDS
TGGAGAGAAAAGGACGGCCT+CGG 0.492416 8.2:-63795950 MS.gene019398:CDS
GAAGCTAGGTTTGATCCTGT+GGG 0.500369 8.2:-63795107 MS.gene019398:CDS
GTGGGCTATGGCTTTACCTA+CGG 0.503377 8.2:-63795294 MS.gene019398:CDS
TGGGCTATGGCTTTACCTAC+GGG 0.506707 8.2:-63795293 MS.gene019398:CDS
TTCGTTGGGCGCCAGAGACT+AGG 0.511728 8.2:-63796203 MS.gene019398:CDS
TTGATTTACTTTCATAATGG+TGG 0.512216 8.2:-63796318 MS.gene019398:CDS
TGTCTTGTTATTGGGTATGG+TGG 0.512697 8.2:-63795194 MS.gene019398:CDS
GTTGGACATGATGTGGGCTA+TGG 0.521799 8.2:-63795306 MS.gene019398:CDS
TGACCATGTTGGTCAAATGT+GGG 0.525547 8.2:-63795139 MS.gene019398:CDS
AATTATGAACCTTATTTCCG+AGG 0.528856 8.2:+63795933 None:intergenic
ACACTGGTAAGGGCAAAGTC+TGG 0.531768 8.2:+63795327 None:intergenic
GTGACCATGTTGGTCAAATG+TGG 0.535257 8.2:-63795140 MS.gene019398:CDS
TTCTTCCAAAAGGTTTGCAA+CGG 0.538428 8.2:-63795351 MS.gene019398:intron
TATGGGTACCAGCATCAGCC+GGG 0.538444 8.2:+63796280 None:intergenic
AATCAAATGACGAATCCTGA+TGG 0.539467 8.2:-63796132 MS.gene019398:CDS
ATTGCAATCCAATGGCAAAA+GGG 0.548534 8.2:-63795250 MS.gene019398:CDS
TACCAGTGTTGGACATGATG+TGG 0.551538 8.2:-63795313 MS.gene019398:CDS
TGTCCGGGTAACCTAGTCTC+TGG 0.551902 8.2:+63796192 None:intergenic
TTGAGGGTGTCTTGTAGGCA+CGG 0.553474 8.2:+63796484 None:intergenic
TGGGTATGGTGGAGACATCA+TGG 0.554451 8.2:-63795183 MS.gene019398:CDS
GGTCAACCATATCAATATTG+TGG 0.557103 8.2:+63795081 None:intergenic
GTGGGGTCCAGGTTGAAGCT+AGG 0.557168 8.2:-63795121 MS.gene019398:CDS
CATAAAGATAACACCTCGAT+GGG 0.558427 8.2:+63796082 None:intergenic
TGCAAACATTGTGTTCAATA+CGG 0.560159 8.2:-63796046 MS.gene019398:CDS
GTGCGGTTATAAATATTGCA+AGG 0.561146 8.2:-63795046 MS.gene019398:CDS
GGATTGAGTTTCAATCCTGA+CGG 0.564876 8.2:-63796516 MS.gene019398:CDS
TGAAGGTTCGGGGTTCGCGT+CGG 0.566328 8.2:+63796461 None:intergenic
AGTCTCTGGCGCCCAACGAA+AGG 0.566700 8.2:+63796206 None:intergenic
CGAGCATCTTGATATTGTCC+GGG 0.569073 8.2:+63796177 None:intergenic
GCACGGTGGAGAGTTCCGTC+AGG 0.576931 8.2:+63796501 None:intergenic
TAACCGCACTAGCTCTAGTA+GGG 0.577127 8.2:+63795060 None:intergenic
TGGTTGGGTCATCCTAAGCC+CGG 0.577877 8.2:-63796298 MS.gene019398:CDS
ATCATGTCCAACACTGGTAA+GGG 0.578520 8.2:+63795317 None:intergenic
TCAATATTGTGGAACCCCAC+AGG 0.582193 8.2:+63795092 None:intergenic
CCATAAAGATAACACCTCGA+TGG 0.586600 8.2:+63796081 None:intergenic
GCGCCAGAGACTAGGTTACC+CGG 0.604483 8.2:-63796195 MS.gene019398:CDS
TGCGGTTATAAATATTGCAA+GGG 0.608893 8.2:-63795045 MS.gene019398:CDS
GTCCATATCTCCAATCTGCA+TGG 0.609856 8.2:+63796023 None:intergenic
CGGGGACAAATCGTGACCAT+AGG 0.613124 8.2:-63795274 MS.gene019398:CDS
AAGCTAGGTTTGATCCTGTG+GGG 0.615240 8.2:-63795106 MS.gene019398:CDS
CCATAGGTATTGCAATCCAA+TGG 0.617062 8.2:-63795258 MS.gene019398:CDS
ACATAGGTTGATTCATAACA+AGG 0.617116 8.2:+63795977 None:intergenic
GATCAAACCTAGCTTCAACC+TGG 0.619274 8.2:+63795114 None:intergenic
GCCCACATCATGTCCAACAC+TGG 0.620226 8.2:+63795311 None:intergenic
GAACCCCGAACCTTCACCGG+GGG 0.629310 8.2:-63796454 MS.gene019398:CDS
ACCAGTGTTGGACATGATGT+GGG 0.636340 8.2:-63795312 MS.gene019398:CDS
ACAAGAATTTGTGACCATGT+TGG 0.638031 8.2:-63795150 MS.gene019398:CDS
TTGGACACCGTAGAAACCCC+CGG 0.639060 8.2:+63796438 None:intergenic
GATTGAAACTCAATCCAAAG+TGG 0.656440 8.2:+63796523 None:intergenic
GACCATGTTGGTCAAATGTG+GGG 0.660571 8.2:-63795138 MS.gene019398:CDS
TGACCCTACTAGAGCTAGTG+CGG 0.675155 8.2:-63795063 MS.gene019398:CDS
AAAATGTCAAGAAATTAGGG+AGG 0.680447 8.2:-63795217 MS.gene019398:CDS
TGGTCACGATTTGTCCCCGT+AGG 0.685848 8.2:+63795278 None:intergenic
CGAATCCTGATGGAGAGCAA+TGG 0.687815 8.2:-63796122 MS.gene019398:CDS
GACCCCACATTTGACCAACA+TGG 0.691227 8.2:+63795136 None:intergenic
ACCATCAAACGACAATACTG+TGG 0.700939 8.2:-63796355 MS.gene019398:CDS
GAGACTATGGTGACCCATCG+AGG 0.705564 8.2:-63796095 MS.gene019398:CDS
GGGCTATGGCTTTACCTACG+GGG 0.721248 8.2:-63795292 MS.gene019398:CDS
AGGGTGTCTTGTAGGCACGG+TGG 0.724739 8.2:+63796487 None:intergenic
CGAACCCCGAACCTTCACCG+GGG 0.774672 8.2:-63796455 MS.gene019398:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTTCAAACATCTATA+AGG + chr8.2:63796060-63796079 None:intergenic 15.0%
!! TTATGAAAGTAAATCAATAT+CGG + chr8.2:63795253-63795272 None:intergenic 15.0%
!!! AAAATATATATTGACTTGTT+TGG - chr8.2:63795749-63795768 MS.gene019398:intron 15.0%
!!! ATATTGATTTACTTTCATAA+TGG - chr8.2:63795253-63795272 MS.gene019398:CDS 15.0%
!!! ATTTCATTTTAGTTTTATAG+AGG - chr8.2:63795998-63796017 MS.gene019398:CDS 15.0%
!!! AAGATTCGAACATTTTTTAT+GGG + chr8.2:63795314-63795333 None:intergenic 20.0%
!!! TGATGATGAGAAAAAAATAT+GGG - chr8.2:63795171-63795190 MS.gene019398:CDS 20.0%
!!! TTGATGATGAGAAAAAAATA+TGG - chr8.2:63795170-63795189 MS.gene019398:CDS 20.0%
!!! TTTCTTTTTTTTCTTCCAAA+AGG - chr8.2:63796213-63796232 MS.gene019398:CDS 20.0%
! AATTTCAAACATCTATAAGG+TGG + chr8.2:63796057-63796076 None:intergenic 25.0%
! ATCATCAATTGTTATGTCTT+TGG + chr8.2:63795158-63795177 None:intergenic 25.0%
! CAAAATTACTCATTATCATG+TGG - chr8.2:63796141-63796160 MS.gene019398:CDS 25.0%
! TGGAAAATGTCAAGAAATTA+GGG - chr8.2:63796354-63796373 MS.gene019398:CDS 25.0%
! TTGATTTACTTTCATAATGG+TGG - chr8.2:63795256-63795275 MS.gene019398:CDS 25.0%
! TTGGAAAATGTCAAGAAATT+AGG - chr8.2:63796353-63796372 MS.gene019398:CDS 25.0%
!!! CAAGATTCGAACATTTTTTA+TGG + chr8.2:63795315-63795334 None:intergenic 25.0%
AAAATGTCAAGAAATTAGGG+AGG - chr8.2:63796357-63796376 MS.gene019398:CDS 30.0%
GAGAATAACACATATCTCTT+TGG - chr8.2:63795719-63795738 MS.gene019398:intron 30.0%
GTCTTGATTCAAAGAGATTA+AGG + chr8.2:63796122-63796141 None:intergenic 30.0%
GTGGTTTCTAATACAATAAG+AGG + chr8.2:63796038-63796057 None:intergenic 30.0%
TGCAAACATTGTGTTCAATA+CGG - chr8.2:63795528-63795547 MS.gene019398:intron 30.0%
TGCGGTTATAAATATTGCAA+GGG - chr8.2:63796529-63796548 MS.gene019398:CDS 30.0%
TTACTTTCATAATGGTGGTT+GGG - chr8.2:63795261-63795280 MS.gene019398:CDS 30.0%
TTGATTCAAAGAGATTAAGG+TGG + chr8.2:63796119-63796138 None:intergenic 30.0%
TTTACTTTCATAATGGTGGT+TGG - chr8.2:63795260-63795279 MS.gene019398:CDS 30.0%
TTTGATCCATATAACCACTT+TGG - chr8.2:63795037-63795056 MS.gene019398:CDS 30.0%
! AAATATGGGTTCGAATTTTC+AGG - chr8.2:63795185-63795204 MS.gene019398:CDS 30.0%
! AATTATGAACCTTATTTCCG+AGG + chr8.2:63795644-63795663 None:intergenic 30.0%
! ATGAATCAACCTATGTTTTC+TGG - chr8.2:63795604-63795623 MS.gene019398:intron 30.0%
! TAAATGATGATGCCTATGTT+TGG + chr8.2:63795912-63795931 None:intergenic 30.0%
! TTCTTGACATTTTCCAAATG+TGG + chr8.2:63796350-63796369 None:intergenic 30.0%
! TTTAAAGCCAAACCAAACAT+TGG - chr8.2:63796076-63796095 MS.gene019398:CDS 30.0%
!! ACATAGGTTGATTCATAACA+AGG + chr8.2:63795600-63795619 None:intergenic 30.0%
!!! ATTTTGACTTGATGTGGAAA+TGG - chr8.2:63795876-63795895 MS.gene019398:intron 30.0%
AATCAAATGACGAATCCTGA+TGG - chr8.2:63795442-63795461 MS.gene019398:intron 35.0%
ACAAGAATTTGTGACCATGT+TGG - chr8.2:63796424-63796443 MS.gene019398:CDS 35.0%
ATTGCAATCCAATGGCAAAA+GGG - chr8.2:63796324-63796343 MS.gene019398:CDS 35.0%
CATAAAGATAACACCTCGAT+GGG + chr8.2:63795495-63795514 None:intergenic 35.0%
CATCAAGTCAAAATCATAGC+AGG + chr8.2:63795870-63795889 None:intergenic 35.0%
CTCAATCCAAAGTGGTTATA+TGG + chr8.2:63795046-63795065 None:intergenic 35.0%
GAGAAATCAAGAGACAAATG+AGG + chr8.2:63795955-63795974 None:intergenic 35.0%
GATTGAAACTCAATCCAAAG+TGG + chr8.2:63795054-63795073 None:intergenic 35.0%
GGTCAACCATATCAATATTG+TGG + chr8.2:63796496-63796515 None:intergenic 35.0%
GTGCGGTTATAAATATTGCA+AGG - chr8.2:63796528-63796547 MS.gene019398:CDS 35.0%
TATCTTTATGGATGTGGTTG+TGG - chr8.2:63795505-63795524 MS.gene019398:intron 35.0%
TATTGCAATCCAATGGCAAA+AGG - chr8.2:63796323-63796342 MS.gene019398:CDS 35.0%
TGTTGATCCAATGTTTGGTT+TGG + chr8.2:63796086-63796105 None:intergenic 35.0%
TTCTTCCAAAAGGTTTGCAA+CGG - chr8.2:63796223-63796242 MS.gene019398:CDS 35.0%
! AGGTGTTATCTTTATGGATG+TGG - chr8.2:63795499-63795518 MS.gene019398:intron 35.0%
! CTTTTCTCTCCAGAAAACAT+AGG + chr8.2:63795616-63795635 None:intergenic 35.0%
!! AGTCTTGTTGATCCAATGTT+TGG + chr8.2:63796091-63796110 None:intergenic 35.0%
!! CTATGTTTTCTGGAGAGAAA+AGG - chr8.2:63795614-63795633 MS.gene019398:intron 35.0%
!! TATTGACTTGTTTGGATGTG+CGG - chr8.2:63795757-63795776 MS.gene019398:intron 35.0%
!!! GCTATGATTTTGACTTGATG+TGG - chr8.2:63795870-63795889 MS.gene019398:intron 35.0%
!!! TCGTTTGATGGTAGTTTTGT+TGG + chr8.2:63795211-63795230 None:intergenic 35.0%
ACCATCAAACGACAATACTG+TGG - chr8.2:63795219-63795238 MS.gene019398:CDS 40.0%
ATATGGACTTAGAGCCTCTA+AGG - chr8.2:63795566-63795585 MS.gene019398:intron 40.0%
ATCATGTCCAACACTGGTAA+GGG + chr8.2:63796260-63796279 None:intergenic 40.0%
CCATAAAGATAACACCTCGA+TGG + chr8.2:63795496-63795515 None:intergenic 40.0%
CCATTGGATTGCAATACCTA+TGG + chr8.2:63796319-63796338 None:intergenic 40.0%
GGATTGAGTTTCAATCCTGA+CGG - chr8.2:63795058-63795077 MS.gene019398:CDS 40.0%
GGGGTTCCACAATATTGATA+TGG - chr8.2:63796487-63796506 MS.gene019398:CDS 40.0%
TCGAGCATCTTGATATTGTC+CGG + chr8.2:63795401-63795420 None:intergenic 40.0%
TGACCATGTTGGTCAAATGT+GGG - chr8.2:63796435-63796454 MS.gene019398:CDS 40.0%
! ACAAGTTTTCTCGTGTCTCA+AGG - chr8.2:63795784-63795803 MS.gene019398:intron 40.0%
! CCATAGGTATTGCAATCCAA+TGG - chr8.2:63796316-63796335 MS.gene019398:CDS 40.0%
! CCATCGAGGTGTTATCTTTA+TGG - chr8.2:63795493-63795512 MS.gene019398:intron 40.0%
! TTAGAGCCTCTAAGGATTAG+TGG - chr8.2:63795574-63795593 MS.gene019398:intron 40.0%
!! AGGTGTCTTGTTATTGGGTA+TGG - chr8.2:63796377-63796396 MS.gene019398:CDS 40.0%
!! GTTTTCTGGAGAGAAAAGGA+CGG - chr8.2:63795618-63795637 MS.gene019398:intron 40.0%
!! TAGGGAGGTGTCTTGTTATT+GGG - chr8.2:63796372-63796391 MS.gene019398:CDS 40.0%
!! TGTCTTGTTATTGGGTATGG+TGG - chr8.2:63796380-63796399 MS.gene019398:CDS 40.0%
!! TTAGGGAGGTGTCTTGTTAT+TGG - chr8.2:63796371-63796390 MS.gene019398:CDS 40.0%
!!! ATGCTCGAGATGCTATTTTG+TGG - chr8.2:63795413-63795432 MS.gene019398:intron 40.0%
!!! TGCTCGAGATGCTATTTTGT+GGG - chr8.2:63795414-63795433 MS.gene019398:intron 40.0%
AAGCTAGGTTTGATCCTGTG+GGG - chr8.2:63796468-63796487 MS.gene019398:CDS 45.0%
AATGGCAAAAGGGCCACATT+TGG - chr8.2:63796334-63796353 MS.gene019398:CDS 45.0%
ACAAGGCCACTAATCCTTAG+AGG + chr8.2:63795583-63795602 None:intergenic 45.0%
CATCATGTCCAACACTGGTA+AGG + chr8.2:63796261-63796280 None:intergenic 45.0%
CGAGCATCTTGATATTGTCC+GGG + chr8.2:63795400-63795419 None:intergenic 45.0%
GAAGCTAGGTTTGATCCTGT+GGG - chr8.2:63796467-63796486 MS.gene019398:CDS 45.0%
GACCATGTTGGTCAAATGTG+GGG - chr8.2:63796436-63796455 MS.gene019398:CDS 45.0%
GAGCAATGGTTGAGAGACTA+TGG - chr8.2:63795466-63795485 MS.gene019398:intron 45.0%
GATCAAACCTAGCTTCAACC+TGG + chr8.2:63796463-63796482 None:intergenic 45.0%
GCGACAGAGACAACAATACT+AGG + chr8.2:63795349-63795368 None:intergenic 45.0%
GTCCATATCTCCAATCTGCA+TGG + chr8.2:63795554-63795573 None:intergenic 45.0%
GTGACCATGTTGGTCAAATG+TGG - chr8.2:63796434-63796453 MS.gene019398:CDS 45.0%
TCAATATTGTGGAACCCCAC+AGG + chr8.2:63796485-63796504 None:intergenic 45.0%
TGAAGCTAGGTTTGATCCTG+TGG - chr8.2:63796466-63796485 MS.gene019398:CDS 45.0%
TTCAATACGGCCATGCAGAT+TGG - chr8.2:63795541-63795560 MS.gene019398:intron 45.0%
! AAATGTGGCCCTTTTGCCAT+TGG + chr8.2:63796335-63796354 None:intergenic 45.0%
! ACCAGTGTTGGACATGATGT+GGG - chr8.2:63796262-63796281 MS.gene019398:CDS 45.0%
! GCCACAGTATTGTCGTTTGA+TGG + chr8.2:63795223-63795242 None:intergenic 45.0%
! TACCAGTGTTGGACATGATG+TGG - chr8.2:63796261-63796280 MS.gene019398:CDS 45.0%
!! ATAACCGCACTAGCTCTAGT+AGG + chr8.2:63796518-63796537 None:intergenic 45.0%
!! TAACCGCACTAGCTCTAGTA+GGG + chr8.2:63796517-63796536 None:intergenic 45.0%
AAAGGACGGCCTCGGAAATA+AGG - chr8.2:63795632-63795651 MS.gene019398:intron 50.0%
ACACTGGTAAGGGCAAAGTC+TGG + chr8.2:63796250-63796269 None:intergenic 50.0%
CGAATCCTGATGGAGAGCAA+TGG - chr8.2:63795452-63795471 MS.gene019398:intron 50.0%
CTCAACCATTGCTCTCCATC+AGG + chr8.2:63795460-63795479 None:intergenic 50.0%
GACCCCACATTTGACCAACA+TGG + chr8.2:63796441-63796460 None:intergenic 50.0%
GACTTTGCCCTTACCAGTGT+TGG - chr8.2:63796250-63796269 MS.gene019398:CDS 50.0%
GGCACTGCACAACCAAACAT+AGG - chr8.2:63795897-63795916 MS.gene019398:intron 50.0%
GGCCATGCAGATTGGAGATA+TGG - chr8.2:63795549-63795568 MS.gene019398:intron 50.0%
TGACCCTACTAGAGCTAGTG+CGG - chr8.2:63796511-63796530 MS.gene019398:CDS 50.0%
TGTCTCTGTCGCCTTTCGTT+GGG - chr8.2:63795357-63795376 MS.gene019398:intron 50.0%
TTATGGGTACCAGCATCAGC+CGG + chr8.2:63795298-63795317 None:intergenic 50.0%
TTGTCTCTGTCGCCTTTCGT+TGG - chr8.2:63795356-63795375 MS.gene019398:intron 50.0%
! CTGGTCCGTTGCAAACCTTT+TGG + chr8.2:63796231-63796250 None:intergenic 50.0%
! GTGGGCTATGGCTTTACCTA+CGG - chr8.2:63796280-63796299 MS.gene019398:CDS 50.0%
! GTTGGACATGATGTGGGCTA+TGG - chr8.2:63796268-63796287 MS.gene019398:CDS 50.0%
! TGGGCTATGGCTTTACCTAC+GGG - chr8.2:63796281-63796300 MS.gene019398:CDS 50.0%
! TGGGTATGGTGGAGACATCA+TGG - chr8.2:63796391-63796410 MS.gene019398:CDS 50.0%
!! TGACTTGTTTGGATGTGCGG+TGG - chr8.2:63795760-63795779 MS.gene019398:intron 50.0%
!! TTGAGGGTGTCTTGTAGGCA+CGG + chr8.2:63795093-63795112 None:intergenic 50.0%
ACCTTCACCGGGGGTTTCTA+CGG - chr8.2:63795129-63795148 MS.gene019398:CDS 55.0%
AGAAACCCCCGGTGAAGGTT+CGG + chr8.2:63795128-63795147 None:intergenic 55.0%
CGGGGACAAATCGTGACCAT+AGG - chr8.2:63796300-63796319 MS.gene019398:CDS 55.0%
GAGACTATGGTGACCCATCG+AGG - chr8.2:63795479-63795498 MS.gene019398:intron 55.0%
GCCCACATCATGTCCAACAC+TGG + chr8.2:63796266-63796285 None:intergenic 55.0%
GTTGGTCAAATGTGGGGTCC+AGG - chr8.2:63796442-63796461 MS.gene019398:CDS 55.0%
TATGGGTACCAGCATCAGCC+GGG + chr8.2:63795297-63795316 None:intergenic 55.0%
TGGAGAGAAAAGGACGGCCT+CGG - chr8.2:63795624-63795643 MS.gene019398:intron 55.0%
TGGTCACGATTTGTCCCCGT+AGG + chr8.2:63796299-63796318 None:intergenic 55.0%
TGGTTGGGTCATCCTAAGCC+CGG - chr8.2:63795276-63795295 MS.gene019398:CDS 55.0%
TGTCCGGGTAACCTAGTCTC+TGG + chr8.2:63795385-63795404 None:intergenic 55.0%
TTGGACACCGTAGAAACCCC+CGG + chr8.2:63795139-63795158 None:intergenic 55.0%
! GGGCTATGGCTTTACCTACG+GGG - chr8.2:63796282-63796301 MS.gene019398:CDS 55.0%
!! GTCGGTTGAGGGTGTCTTGT+AGG + chr8.2:63795098-63795117 None:intergenic 55.0%
AAACCCCCGGTGAAGGTTCG+GGG + chr8.2:63795126-63795145 None:intergenic 60.0%
ACCGTAGAAACCCCCGGTGA+AGG + chr8.2:63795133-63795152 None:intergenic 60.0%
AGTCTCTGGCGCCCAACGAA+AGG + chr8.2:63795371-63795390 None:intergenic 60.0%
ATCCTAAGCCCGGCTGATGC+TGG - chr8.2:63795286-63795305 MS.gene019398:CDS 60.0%
GAAACCCCCGGTGAAGGTTC+GGG + chr8.2:63795127-63795146 None:intergenic 60.0%
GCGCCAGAGACTAGGTTACC+CGG - chr8.2:63795379-63795398 MS.gene019398:intron 60.0%
TACCAGCATCAGCCGGGCTT+AGG + chr8.2:63795291-63795310 None:intergenic 60.0%
TGAAGGTTCGGGGTTCGCGT+CGG + chr8.2:63795116-63795135 None:intergenic 60.0%
TTCGTTGGGCGCCAGAGACT+AGG - chr8.2:63795371-63795390 MS.gene019398:intron 60.0%
! AGGGTGTCTTGTAGGCACGG+TGG + chr8.2:63795090-63795109 None:intergenic 60.0%
! GTGGGGTCCAGGTTGAAGCT+AGG - chr8.2:63796453-63796472 MS.gene019398:CDS 60.0%
CGAACCCCGAACCTTCACCG+GGG - chr8.2:63795119-63795138 MS.gene019398:CDS 65.0%
CGCGAACCCCGAACCTTCAC+CGG - chr8.2:63795117-63795136 MS.gene019398:CDS 65.0%
GAACCCCGAACCTTCACCGG+GGG - chr8.2:63795120-63795139 MS.gene019398:CDS 65.0%
GCACGGTGGAGAGTTCCGTC+AGG + chr8.2:63795076-63795095 None:intergenic 65.0%
GCGAACCCCGAACCTTCACC+GGG - chr8.2:63795118-63795137 MS.gene019398:CDS 65.0%
!! TCGGGGTTCGCGTCGGTTGA+GGG + chr8.2:63795109-63795128 None:intergenic 65.0%
!! TTCGGGGTTCGCGTCGGTTG+AGG + chr8.2:63795110-63795129 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 63795028 63796568 63795028 ID=MS.gene019398
chr8.2 mRNA 63795028 63796568 63795028 ID=MS.gene019398.t1;Parent=MS.gene019398
chr8.2 exon 63795943 63796568 63795943 ID=MS.gene019398.t1.exon1;Parent=MS.gene019398.t1
chr8.2 CDS 63795943 63796568 63795943 ID=cds.MS.gene019398.t1;Parent=MS.gene019398.t1
chr8.2 exon 63795028 63795361 63795028 ID=MS.gene019398.t1.exon2;Parent=MS.gene019398.t1
chr8.2 CDS 63795028 63795361 63795028 ID=cds.MS.gene019398.t1;Parent=MS.gene019398.t1
Gene Sequence

>MS.gene019398

ATGTCAAAATTTGATCCATATAACCACTTTGGATTGAGTTTCAATCCTGACGGAACTCTCCACCGTGCCTACAAGACACCCTCAACCGACGCGAACCCCGAACCTTCACCGGGGGTTTCTACGGTGTCCAAAGACATAACAATTGATGATGAGAAAAAAATATGGGTTCGAATTTTCAGGCCAACAAAACTACCATCAAACGACAATACTGTGGCGCGTTTACCGATATTGATTTACTTTCATAATGGTGGTTGGGTCATCCTAAGCCCGGCTGATGCTGGTACCCATAAAAAATGTTCGAATCTTGCTTCTGACATTCCTAGTATTGTTGTCTCTGTCGCCTTTCGTTGGGCGCCAGAGACTAGGTTACCCGGACAATATCAAGATGCTCGAGATGCTATTTTGTGGGTGAAAAATCAAATGACGAATCCTGATGGAGAGCAATGGTTGAGAGACTATGGTGACCCATCGAGGTGTTATCTTTATGGATGTGGTTGTGGTGCAAACATTGTGTTCAATACGGCCATGCAGATTGGAGATATGGACTTAGAGCCTCTAAGGATTAGTGGCCTTGTTATGAATCAACCTATGTTTTCTGGAGAGAAAAGGACGGCCTCGGAAATAAGGTTCATAATTTTATCATTCTCTTAAAAAAAAAAATTGATCAATTATCATTCTCTTAAATAAATTTGAGAATAACACATATCTCTTTGGTTATGAAAAAATATATATTGACTTGTTTGGATGTGCGGTGGAACAAGTTTTCTCGTGTCTCAAGGCAAAAATTGTCATGATTTAAAAAAGCTATTATATGTAGCTTCACTGCTAACATGTAAGTTCCTGCTATGATTTTGACTTGATGTGGAAATGGCACTGCACAACCAAACATAGGCATCATCATTTATTTTTTAAAAAATATTTGCACCTCATTTGTCTCTTGATTTCTCTTGACTATATTGAGTTATGAAGAATTTCATTTTAGTTTTATAGAGGTTTGAAAATTTCTTCCTCTTATTGTATTAGAAACCACCTTATAGATGTTTGAAATTTTAAAGCCAAACCAAACATTGGATCAACAAGACTCTCAACCACCTTAATCTCTTTGAATCAAGACAAAATTACTCATTATCATGTGGTCACGTTATTATTAAATTTTATTTTGCATGAGTCACATTACTTTGTTTTTTTCTTTTTTTTCTTCCAAAAGGTTTGCAACGGACCAGACTTTGCCCTTACCAGTGTTGGACATGATGTGGGCTATGGCTTTACCTACGGGGACAAATCGTGACCATAGGTATTGCAATCCAATGGCAAAAGGGCCACATTTGGAAAATGTCAAGAAATTAGGGAGGTGTCTTGTTATTGGGTATGGTGGAGACATCATGGTTGATCGACAACAAGAATTTGTGACCATGTTGGTCAAATGTGGGGTCCAGGTTGAAGCTAGGTTTGATCCTGTGGGGTTCCACAATATTGATATGGTTGACCCTACTAGAGCTAGTGCGGTTATAAATATTGCAAGGGAGTTTATTATACTTTGA
Protein sequence

>MS.gene019398.t1

MSKFDPYNHFGLSFNPDGTLHRAYKTPSTDANPEPSPGVSTVSKDITIDDEKKIWVRIFRPTKLPSNDNTVARLPILIYFHNGGWVILSPADAGTHKKCSNLASDIPSIVVSVAFRWAPETRLPGQYQDARDAILWVKNQMTNPDGEQWLRDYGDPSRCYLYGCGCGANIVFNTAMQIGDMDLEPLRISGLVMNQPMFSGEKRTASEIRFATDQTLPLPVLDMMWAMALPTGTNRDHRYCNPMAKGPHLENVKKLGRCLVIGYGGDIMVDRQQEFVTMLVKCGVQVEARFDPVGFHNIDMVDPTRASAVINIAREFIIL