Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21234.t1 | RHN81020.1 | 95.9 | 369 | 15 | 0 | 1 | 369 | 145 | 513 | 9.70E-202 | 712.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21234.t1 | Q9FZ24 | 48.5 | 359 | 180 | 4 | 2 | 355 | 127 | 485 | 7.5e-94 | 345.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21234.t1 | G7ICW4 | 95.9 | 369 | 15 | 0 | 1 | 369 | 86 | 454 | 7.0e-202 | 712.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene21234 | 0.807976 | 3.88E-50 | -1.69E-46 |
| MS.gene050885 | MS.gene21234 | 0.804748 | 1.86E-49 | -1.69E-46 |
| MS.gene052717 | MS.gene21234 | 0.802598 | 5.20E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene21234 | 0.814855 | 1.25E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene21234 | 0.833984 | 3.90E-56 | -1.69E-46 |
| MS.gene05689 | MS.gene21234 | 0.851144 | 1.07E-60 | -1.69E-46 |
| MS.gene059935 | MS.gene21234 | 0.840969 | 6.31E-58 | -1.69E-46 |
| MS.gene060830 | MS.gene21234 | 0.815962 | 7.06E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene068116 | MS.gene21234 | PPI |
| MS.gene21234 | MS.gene067932 | PPI |
| MS.gene69362 | MS.gene21234 | PPI |
| MS.gene21234 | MS.gene008863 | PPI |
| MS.gene067938 | MS.gene21234 | PPI |
| MS.gene21234 | MS.gene056432 | PPI |
| MS.gene014383 | MS.gene21234 | PPI |
| MS.gene21234 | MS.gene068108 | PPI |
| MS.gene068115 | MS.gene21234 | PPI |
| MS.gene21234 | MS.gene52807 | PPI |
| MS.gene008872 | MS.gene21234 | PPI |
| MS.gene064795 | MS.gene21234 | PPI |
| MS.gene21234 | MS.gene008871 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21234.t1 | MTR_1g086820 | 95.935 | 369 | 15 | 0 | 1 | 369 | 86 | 454 | 0.0 | 736 |
| MS.gene21234.t1 | MTR_8g069570 | 40.556 | 360 | 208 | 4 | 2 | 356 | 79 | 437 | 2.72e-84 | 265 |
| MS.gene21234.t1 | MTR_8g007375 | 33.521 | 355 | 234 | 2 | 8 | 360 | 7 | 361 | 1.51e-59 | 198 |
| MS.gene21234.t1 | MTR_2g013450 | 30.939 | 362 | 240 | 7 | 2 | 356 | 84 | 442 | 2.18e-49 | 174 |
| MS.gene21234.t1 | MTR_8g059115 | 28.653 | 349 | 247 | 2 | 11 | 357 | 9 | 357 | 2.69e-48 | 169 |
| MS.gene21234.t1 | MTR_2g047855 | 30.857 | 350 | 232 | 7 | 2 | 345 | 87 | 432 | 1.33e-46 | 166 |
| MS.gene21234.t1 | MTR_1g072300 | 30.563 | 373 | 244 | 8 | 2 | 365 | 93 | 459 | 7.16e-46 | 164 |
| MS.gene21234.t1 | MTR_8g465890 | 30.878 | 353 | 232 | 6 | 2 | 346 | 83 | 431 | 1.90e-44 | 160 |
| MS.gene21234.t1 | MTR_3g099753 | 29.640 | 361 | 240 | 5 | 15 | 367 | 107 | 461 | 2.94e-44 | 160 |
| MS.gene21234.t1 | MTR_3g099753 | 29.640 | 361 | 240 | 5 | 15 | 367 | 131 | 485 | 4.80e-44 | 160 |
| MS.gene21234.t1 | MTR_2g090290 | 27.027 | 370 | 221 | 8 | 15 | 356 | 102 | 450 | 5.49e-35 | 134 |
| MS.gene21234.t1 | MTR_1g022400 | 30.400 | 250 | 170 | 4 | 2 | 247 | 110 | 359 | 3.41e-32 | 125 |
| MS.gene21234.t1 | MTR_8g031520 | 36.170 | 141 | 87 | 2 | 2 | 139 | 160 | 300 | 3.88e-18 | 84.3 |
| MS.gene21234.t1 | MTR_7g089770 | 23.714 | 350 | 249 | 12 | 2 | 345 | 212 | 549 | 1.09e-17 | 85.1 |
| MS.gene21234.t1 | MTR_1g050750 | 23.238 | 383 | 270 | 12 | 1 | 377 | 145 | 509 | 6.59e-16 | 79.7 |
| MS.gene21234.t1 | MTR_2g096880 | 21.067 | 356 | 275 | 4 | 1 | 351 | 98 | 452 | 2.53e-13 | 71.6 |
| MS.gene21234.t1 | MTR_8g098755 | 22.973 | 296 | 216 | 7 | 20 | 307 | 357 | 648 | 4.47e-12 | 68.2 |
| MS.gene21234.t1 | MTR_7g017530 | 28.824 | 170 | 119 | 2 | 45 | 213 | 283 | 451 | 5.62e-12 | 67.8 |
| MS.gene21234.t1 | MTR_8g080940 | 24.891 | 229 | 168 | 4 | 48 | 274 | 602 | 828 | 7.96e-11 | 64.3 |
| MS.gene21234.t1 | MTR_8g080940 | 24.891 | 229 | 168 | 4 | 48 | 274 | 804 | 1030 | 8.19e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21234.t1 | AT1G02370 | 48.468 | 359 | 180 | 4 | 2 | 355 | 127 | 485 | 5.93e-118 | 353 |
| MS.gene21234.t1 | AT4G01990 | 47.472 | 356 | 184 | 3 | 2 | 355 | 96 | 450 | 1.80e-110 | 332 |
| MS.gene21234.t1 | AT1G60770 | 38.674 | 362 | 214 | 6 | 2 | 357 | 79 | 438 | 1.39e-80 | 255 |
| MS.gene21234.t1 | AT1G02150 | 34.316 | 373 | 241 | 3 | 2 | 370 | 123 | 495 | 1.22e-63 | 212 |
| MS.gene21234.t1 | AT4G21705 | 31.714 | 350 | 236 | 3 | 11 | 357 | 91 | 440 | 1.68e-57 | 195 |
| MS.gene21234.t1 | AT5G27460 | 30.878 | 353 | 237 | 4 | 1 | 346 | 93 | 445 | 1.47e-48 | 171 |
| MS.gene21234.t1 | AT2G20710 | 29.885 | 348 | 238 | 4 | 11 | 356 | 9 | 352 | 6.57e-48 | 167 |
| MS.gene21234.t1 | AT2G20710 | 29.609 | 358 | 245 | 5 | 2 | 356 | 94 | 447 | 6.84e-48 | 169 |
| MS.gene21234.t1 | AT4G02820 | 29.867 | 375 | 252 | 7 | 2 | 371 | 117 | 485 | 3.67e-43 | 157 |
| MS.gene21234.t1 | AT5G09450 | 32.443 | 262 | 167 | 6 | 2 | 255 | 111 | 370 | 1.34e-37 | 140 |
| MS.gene21234.t1 | AT1G28020 | 30.576 | 278 | 188 | 5 | 2 | 274 | 92 | 369 | 5.02e-29 | 118 |
| MS.gene21234.t1 | AT1G80270 | 29.384 | 211 | 143 | 6 | 2 | 209 | 184 | 391 | 7.33e-18 | 85.9 |
| MS.gene21234.t1 | AT1G80270 | 29.384 | 211 | 143 | 6 | 2 | 209 | 184 | 391 | 7.33e-18 | 85.9 |
| MS.gene21234.t1 | AT1G80270 | 29.384 | 211 | 143 | 6 | 2 | 209 | 184 | 391 | 7.33e-18 | 85.9 |
| MS.gene21234.t1 | AT1G80270 | 29.384 | 211 | 143 | 6 | 2 | 209 | 184 | 391 | 7.33e-18 | 85.9 |
| MS.gene21234.t1 | AT1G80270 | 29.384 | 211 | 143 | 6 | 2 | 209 | 184 | 391 | 7.33e-18 | 85.9 |
| MS.gene21234.t1 | AT3G15590 | 30.144 | 209 | 142 | 4 | 2 | 208 | 197 | 403 | 8.96e-17 | 82.4 |
| MS.gene21234.t1 | AT3G15590 | 30.144 | 209 | 142 | 4 | 2 | 208 | 197 | 403 | 8.96e-17 | 82.4 |
| MS.gene21234.t1 | AT1G15480 | 24.611 | 321 | 230 | 9 | 2 | 317 | 182 | 495 | 2.72e-15 | 77.8 |
| MS.gene21234.t1 | AT3G11380 | 26.277 | 274 | 166 | 6 | 2 | 270 | 99 | 341 | 1.63e-14 | 75.5 |
| MS.gene21234.t1 | AT1G07590 | 23.404 | 282 | 213 | 3 | 1 | 280 | 120 | 400 | 1.90e-13 | 72.0 |
| MS.gene21234.t1 | AT5G21222 | 25.328 | 229 | 145 | 6 | 3 | 209 | 470 | 694 | 1.42e-12 | 69.7 |
| MS.gene21234.t1 | AT5G21222 | 25.328 | 229 | 145 | 6 | 3 | 209 | 470 | 694 | 1.42e-12 | 69.7 |
| MS.gene21234.t1 | AT5G21222 | 25.328 | 229 | 145 | 6 | 3 | 209 | 470 | 694 | 1.42e-12 | 69.7 |
| MS.gene21234.t1 | AT5G21222 | 25.328 | 229 | 145 | 6 | 3 | 209 | 470 | 694 | 1.42e-12 | 69.7 |
| MS.gene21234.t1 | AT5G04810 | 24.107 | 224 | 161 | 5 | 49 | 267 | 452 | 671 | 8.13e-11 | 64.3 |
| MS.gene21234.t1 | AT5G04810 | 23.830 | 235 | 170 | 5 | 49 | 278 | 452 | 682 | 8.94e-11 | 64.3 |
Find 87 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCATAATAAAATTGTTTA+AGG | 0.218164 | 1.4:-69194197 | MS.gene21234:CDS |
| TTTGATAAGATGGATGAATT+AGG | 0.262779 | 1.4:-69194703 | MS.gene21234:CDS |
| ATGAGTTAAGCAAGATTCTT+AGG | 0.291614 | 1.4:-69193862 | MS.gene21234:CDS |
| GGCATGTTAGTTATGATTCT+AGG | 0.296691 | 1.4:-69194162 | MS.gene21234:CDS |
| CCATATCATTAAGCCTTCTA+AGG | 0.308417 | 1.4:+69194221 | None:intergenic |
| TTATGCTTTCTAACCTTAGA+AGG | 0.314226 | 1.4:-69194234 | MS.gene21234:CDS |
| GCTGCAGAGGACCTTTCTTT+AGG | 0.319713 | 1.4:-69194057 | MS.gene21234:CDS |
| AGGACCTTTCTTTAGGATTC+GGG | 0.341722 | 1.4:-69194050 | MS.gene21234:CDS |
| GAGGACCTTTCTTTAGGATT+CGG | 0.351526 | 1.4:-69194051 | MS.gene21234:CDS |
| TAGGATTCGGGAAATGTTCA+TGG | 0.370256 | 1.4:-69194038 | MS.gene21234:CDS |
| CCTTAGAAGGCTTAATGATA+TGG | 0.371817 | 1.4:-69194221 | MS.gene21234:CDS |
| TTCTTGCTGAGCCTTTATGC+TGG | 0.387794 | 1.4:-69194337 | MS.gene21234:CDS |
| CATATACATAGACATCAAAT+TGG | 0.389303 | 1.4:+69194657 | None:intergenic |
| TTTATTGGAGAAAGGTCAAT+TGG | 0.391224 | 1.4:-69194011 | MS.gene21234:CDS |
| GGAAGCTGTGTCGGTCTTTG+AGG | 0.399258 | 1.4:-69194092 | MS.gene21234:CDS |
| GTTGGTTGGTGTTGCAGTGC+AGG | 0.407651 | 1.4:-69194140 | MS.gene21234:CDS |
| GAAGAAGAAACAGATCTTGA+TGG | 0.427741 | 1.4:-69193890 | MS.gene21234:CDS |
| AATAAAATTGTTTAAGGAGT+GGG | 0.433563 | 1.4:-69194191 | MS.gene21234:CDS |
| TGTTTAAGGAGTGGGAATCT+AGG | 0.433657 | 1.4:-69194183 | MS.gene21234:CDS |
| TGGTGCTATGAGCCACTTAG+AGG | 0.441022 | 1.4:-69193987 | MS.gene21234:CDS |
| CATTACCAGTCCCAGCATAA+AGG | 0.447077 | 1.4:+69194326 | None:intergenic |
| TCAGTTGGTTAATGTTATGA+AGG | 0.448455 | 1.4:-69194608 | MS.gene21234:CDS |
| TCTTGCTGAGCCTTTATGCT+GGG | 0.452519 | 1.4:-69194336 | MS.gene21234:CDS |
| GATAGCTCCGATTGGTCACC+GGG | 0.462784 | 1.4:+69194260 | None:intergenic |
| CATAAAGGCTCAGCAAGAAA+TGG | 0.465952 | 1.4:+69194341 | None:intergenic |
| TTAAAGAGGTTTATAGAGTG+TGG | 0.469721 | 1.4:-69194303 | MS.gene21234:CDS |
| ATTTGATGTCTATGTATATG+AGG | 0.470560 | 1.4:-69194654 | MS.gene21234:CDS |
| CAGTAATGCAAGTTTAATAG+AGG | 0.471032 | 1.4:+69193820 | None:intergenic |
| GCACTTACAGCTTGTGGTGA+AGG | 0.473435 | 1.4:+69193929 | None:intergenic |
| TGGTATTCATACAGTATTGA+AGG | 0.474569 | 1.4:-69193781 | None:intergenic |
| TATGTGTACTTGTTCTTAGC+AGG | 0.476882 | 1.4:+69194784 | None:intergenic |
| TAAAGAGGTTTATAGAGTGT+GGG | 0.486756 | 1.4:-69194302 | MS.gene21234:CDS |
| CTGAGCCTTTATGCTGGGAC+TGG | 0.488058 | 1.4:-69194331 | MS.gene21234:CDS |
| AGTTATGATTCTAGGTTGGT+TGG | 0.491947 | 1.4:-69194154 | MS.gene21234:CDS |
| TTCAACCACTCCTTTCACTT+TGG | 0.493231 | 1.4:+69194837 | None:intergenic |
| CACCGGGGTGATCTTCTTGA+GGG | 0.494822 | 1.4:+69194276 | None:intergenic |
| TGTGCTGCTTTGAATGACCT+TGG | 0.495240 | 1.4:-69194535 | MS.gene21234:CDS |
| ATGAATACCAGGAGATGATT+CGG | 0.497054 | 1.4:+69193794 | None:intergenic |
| AGATCACCCCGGTGACCAAT+CGG | 0.504230 | 1.4:-69194267 | MS.gene21234:CDS |
| GCTGCTATCTATATAAAAGC+TGG | 0.505469 | 1.4:-69194436 | MS.gene21234:CDS |
| TGAGGTTGAACGTGTTTATG+AGG | 0.516026 | 1.4:-69194512 | MS.gene21234:CDS |
| TGTTAGTTATGATTCTAGGT+TGG | 0.519722 | 1.4:-69194158 | MS.gene21234:CDS |
| AAGATGAAGACAAAATTGAC+TGG | 0.525053 | 1.4:-69194477 | MS.gene21234:CDS |
| TACTTGTTCTTAGCAGGAGG+AGG | 0.531968 | 1.4:+69194790 | None:intergenic |
| TGGGACTGGTAATGTTAAAG+AGG | 0.532622 | 1.4:-69194317 | MS.gene21234:CDS |
| AGATAGCTCCGATTGGTCAC+CGG | 0.533726 | 1.4:+69194259 | None:intergenic |
| ATTTCCCGAATCCTAAAGAA+AGG | 0.537745 | 1.4:+69194046 | None:intergenic |
| TGCTTTGAATGACCTTGGTG+AGG | 0.538207 | 1.4:-69194530 | MS.gene21234:CDS |
| TCACCGGGGTGATCTTCTTG+AGG | 0.539174 | 1.4:+69194275 | None:intergenic |
| TTGGAGAAAGGTCAATTGGA+TGG | 0.539563 | 1.4:-69194007 | MS.gene21234:CDS |
| AGAAAAGCACTTACAGCTTG+TGG | 0.542366 | 1.4:+69193923 | None:intergenic |
| AAAGAGGTTTATAGAGTGTG+GGG | 0.547043 | 1.4:-69194301 | MS.gene21234:CDS |
| GAAGCTCTCAAGAGCTGCAG+AGG | 0.547848 | 1.4:-69194070 | MS.gene21234:CDS |
| GATCTTGTGTCCAAAGTGAA+AGG | 0.549809 | 1.4:-69194847 | MS.gene21234:CDS |
| ACTGCATCCGAATCATCTCC+TGG | 0.552993 | 1.4:-69193801 | MS.gene21234:CDS |
| AGAAATGGTAAGTTTCGCGT+TGG | 0.553517 | 1.4:+69194356 | None:intergenic |
| TTACAGCTTGTGGTGAAGGT+TGG | 0.556374 | 1.4:+69193933 | None:intergenic |
| TAATAAAATTGTTTAAGGAG+TGG | 0.559489 | 1.4:-69194192 | MS.gene21234:CDS |
| TTCAATACTGTATGAATACC+AGG | 0.559830 | 1.4:+69193783 | None:intergenic |
| ATTGGTTGCAGATAATGGAA+TGG | 0.561950 | 1.4:-69194921 | None:intergenic |
| AGCTGAGTTGATGCTTAAGA+AGG | 0.568467 | 1.4:-69194401 | MS.gene21234:CDS |
| TGGTAAGTTTCGCGTTGGCG+CGG | 0.569478 | 1.4:+69194361 | None:intergenic |
| CTGAAAGTGCGGCCTCTAAG+TGG | 0.571070 | 1.4:+69193975 | None:intergenic |
| ATGTCTATGTATATGAGGCT+AGG | 0.571867 | 1.4:-69194649 | MS.gene21234:CDS |
| CATGGACAAGGAAGCTGTGT+CGG | 0.574022 | 1.4:-69194101 | MS.gene21234:CDS |
| ACCGTCGAAAGTTCCTCAGT+TGG | 0.578763 | 1.4:-69194623 | MS.gene21234:CDS |
| TAGAAGGCTTAATGATATGG+AGG | 0.581977 | 1.4:-69194218 | MS.gene21234:CDS |
| GAGGCCGCACTTTCAGAAGT+CGG | 0.583270 | 1.4:-69193968 | MS.gene21234:CDS |
| ACCAACTGAGGAACTTTCGA+CGG | 0.585028 | 1.4:+69194622 | None:intergenic |
| CATAATAAGATAGCTCCGAT+TGG | 0.585163 | 1.4:+69194252 | None:intergenic |
| GTGTACTTGTTCTTAGCAGG+AGG | 0.589015 | 1.4:+69194787 | None:intergenic |
| TGGTTAATGTTATGAAGGAG+AGG | 0.593769 | 1.4:-69194603 | MS.gene21234:CDS |
| TTCATAACATTAACCAACTG+AGG | 0.600464 | 1.4:+69194610 | None:intergenic |
| AGAAGGCTTAATGATATGGA+GGG | 0.604451 | 1.4:-69194217 | MS.gene21234:CDS |
| GCTAAGAACAAGTACACATA+CGG | 0.606065 | 1.4:-69194781 | MS.gene21234:CDS |
| TCTTCTAAACTGTTACTGCA+AGG | 0.614146 | 1.4:-69194755 | MS.gene21234:CDS |
| GGCTTACTTGAGTCAAAACA+TGG | 0.616784 | 1.4:-69194119 | MS.gene21234:CDS |
| CTTGAGTCAAAACATGGACA+AGG | 0.623542 | 1.4:-69194113 | MS.gene21234:CDS |
| AAGAGGTTTATAGAGTGTGG+GGG | 0.627275 | 1.4:-69194300 | MS.gene21234:CDS |
| TGAGTTGATGCTTAAGAAGG+TGG | 0.644162 | 1.4:-69194398 | MS.gene21234:CDS |
| TAATGGAATGGATGATGATG+AGG | 0.652324 | 1.4:-69194909 | MS.gene21234:CDS |
| CAAGGAACTAATGCTAGACA+AGG | 0.652550 | 1.4:-69194737 | MS.gene21234:CDS |
| GACCCTCAAGAAGATCACCC+CGG | 0.654594 | 1.4:-69194278 | MS.gene21234:CDS |
| ATCGCCGACTTCTGAAAGTG+CGG | 0.674194 | 1.4:+69193964 | None:intergenic |
| TGTGTCCAAAGTGAAAGGAG+TGG | 0.764655 | 1.4:-69194842 | MS.gene21234:CDS |
| AAACACGTTCAACCTCACCA+AGG | 0.766259 | 1.4:+69194518 | None:intergenic |
| ATAGCTCCGATTGGTCACCG+GGG | 0.806286 | 1.4:+69194261 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATTGTTTAAGGAGT+GGG | - | chr1.4:69194500-69194519 | MS.gene21234:CDS | 20.0% |
| !! | TAATAAAATTGTTTAAGGAG+TGG | - | chr1.4:69194499-69194518 | MS.gene21234:CDS | 20.0% |
| ! | ATTTGATGTCTATGTATATG+AGG | - | chr1.4:69194037-69194056 | MS.gene21234:CDS | 25.0% |
| ! | CATATACATAGACATCAAAT+TGG | + | chr1.4:69194037-69194056 | None:intergenic | 25.0% |
| ! | GGGCATAATAAAATTGTTTA+AGG | - | chr1.4:69194494-69194513 | MS.gene21234:CDS | 25.0% |
| ! | TTTGATAAGATGGATGAATT+AGG | - | chr1.4:69193988-69194007 | MS.gene21234:CDS | 25.0% |
| !! | CTGAATTTACATACATTTTG+TGG | - | chr1.4:69194124-69194143 | MS.gene21234:CDS | 25.0% |
| !! | GAGGCAAATTAATTTTTCAT+GGG | - | chr1.4:69193801-69193820 | MS.gene21234:CDS | 25.0% |
| !! | TGAGGCAAATTAATTTTTCA+TGG | - | chr1.4:69193800-69193819 | MS.gene21234:CDS | 25.0% |
| !!! | AATGTTCATGGTGTTTTTAT+TGG | - | chr1.4:69194665-69194684 | MS.gene21234:CDS | 25.0% |
| !!! | ATTGTCTCATTTTGATAAGA+TGG | - | chr1.4:69193978-69193997 | MS.gene21234:CDS | 25.0% |
| AAGATGAAGACAAAATTGAC+TGG | - | chr1.4:69194214-69194233 | MS.gene21234:CDS | 30.0% | |
| ATGAGTTAAGCAAGATTCTT+AGG | - | chr1.4:69194829-69194848 | MS.gene21234:CDS | 30.0% | |
| CAGTAATGCAAGTTTAATAG+AGG | + | chr1.4:69194874-69194893 | None:intergenic | 30.0% | |
| TAAAGAGGTTTATAGAGTGT+GGG | - | chr1.4:69194389-69194408 | MS.gene21234:CDS | 30.0% | |
| TCAGTTGGTTAATGTTATGA+AGG | - | chr1.4:69194083-69194102 | MS.gene21234:CDS | 30.0% | |
| TGTTAGTTATGATTCTAGGT+TGG | - | chr1.4:69194533-69194552 | MS.gene21234:CDS | 30.0% | |
| TTAAAGAGGTTTATAGAGTG+TGG | - | chr1.4:69194388-69194407 | MS.gene21234:CDS | 30.0% | |
| TTATGCTTTCTAACCTTAGA+AGG | - | chr1.4:69194457-69194476 | MS.gene21234:CDS | 30.0% | |
| TTCATAACATTAACCAACTG+AGG | + | chr1.4:69194084-69194103 | None:intergenic | 30.0% | |
| TTTATTGGAGAAAGGTCAAT+TGG | - | chr1.4:69194680-69194699 | MS.gene21234:CDS | 30.0% | |
| ! | ACATACATTTTGTGGATGAA+TGG | - | chr1.4:69194132-69194151 | MS.gene21234:CDS | 30.0% |
| ! | CTTTTATATAGATAGCAGCA+AGG | + | chr1.4:69194254-69194273 | None:intergenic | 30.0% |
| !! | ATGGTGTTTTTATTGGAGAA+AGG | - | chr1.4:69194672-69194691 | MS.gene21234:CDS | 30.0% |
| AAAGAGGTTTATAGAGTGTG+GGG | - | chr1.4:69194390-69194409 | MS.gene21234:CDS | 35.0% | |
| AGAAGGCTTAATGATATGGA+GGG | - | chr1.4:69194474-69194493 | MS.gene21234:CDS | 35.0% | |
| ATGAATACCAGGAGATGATT+CGG | + | chr1.4:69194900-69194919 | None:intergenic | 35.0% | |
| ATGTCTATGTATATGAGGCT+AGG | - | chr1.4:69194042-69194061 | MS.gene21234:CDS | 35.0% | |
| ATTTCCCGAATCCTAAAGAA+AGG | + | chr1.4:69194648-69194667 | None:intergenic | 35.0% | |
| CATAATAAGATAGCTCCGAT+TGG | + | chr1.4:69194442-69194461 | None:intergenic | 35.0% | |
| CCATATCATTAAGCCTTCTA+AGG | + | chr1.4:69194473-69194492 | None:intergenic | 35.0% | |
| CCTTAGAAGGCTTAATGATA+TGG | - | chr1.4:69194470-69194489 | MS.gene21234:CDS | 35.0% | |
| GAAGAAGAAACAGATCTTGA+TGG | - | chr1.4:69194801-69194820 | MS.gene21234:CDS | 35.0% | |
| GCTAAGAACAAGTACACATA+CGG | - | chr1.4:69193910-69193929 | MS.gene21234:CDS | 35.0% | |
| GCTGCTATCTATATAAAAGC+TGG | - | chr1.4:69194255-69194274 | MS.gene21234:CDS | 35.0% | |
| GGCATGTTAGTTATGATTCT+AGG | - | chr1.4:69194529-69194548 | MS.gene21234:CDS | 35.0% | |
| TAGAAGGCTTAATGATATGG+AGG | - | chr1.4:69194473-69194492 | MS.gene21234:CDS | 35.0% | |
| TATGTGTACTTGTTCTTAGC+AGG | + | chr1.4:69193910-69193929 | None:intergenic | 35.0% | |
| TCTTCTAAACTGTTACTGCA+AGG | - | chr1.4:69193936-69193955 | MS.gene21234:CDS | 35.0% | |
| TGGTTAATGTTATGAAGGAG+AGG | - | chr1.4:69194088-69194107 | MS.gene21234:CDS | 35.0% | |
| !! | AGTTATGATTCTAGGTTGGT+TGG | - | chr1.4:69194537-69194556 | MS.gene21234:CDS | 35.0% |
| AAGAGGTTTATAGAGTGTGG+GGG | - | chr1.4:69194391-69194410 | MS.gene21234:CDS | 40.0% | |
| AGAAATGGTAAGTTTCGCGT+TGG | + | chr1.4:69194338-69194357 | None:intergenic | 40.0% | |
| CAAGGAACTAATGCTAGACA+AGG | - | chr1.4:69193954-69193973 | MS.gene21234:CDS | 40.0% | |
| CATAAAGGCTCAGCAAGAAA+TGG | + | chr1.4:69194353-69194372 | None:intergenic | 40.0% | |
| CTTGAGTCAAAACATGGACA+AGG | - | chr1.4:69194578-69194597 | MS.gene21234:CDS | 40.0% | |
| GATCTTGTGTCCAAAGTGAA+AGG | - | chr1.4:69193844-69193863 | MS.gene21234:CDS | 40.0% | |
| GGCTTACTTGAGTCAAAACA+TGG | - | chr1.4:69194572-69194591 | MS.gene21234:CDS | 40.0% | |
| TAGGATTCGGGAAATGTTCA+TGG | - | chr1.4:69194653-69194672 | MS.gene21234:CDS | 40.0% | |
| TGAGGTTGAACGTGTTTATG+AGG | - | chr1.4:69194179-69194198 | MS.gene21234:CDS | 40.0% | |
| TGTTTAAGGAGTGGGAATCT+AGG | - | chr1.4:69194508-69194527 | MS.gene21234:CDS | 40.0% | |
| TTCAACCACTCCTTTCACTT+TGG | + | chr1.4:69193857-69193876 | None:intergenic | 40.0% | |
| TTGGAGAAAGGTCAATTGGA+TGG | - | chr1.4:69194684-69194703 | MS.gene21234:CDS | 40.0% | |
| ! | TGGGACTGGTAATGTTAAAG+AGG | - | chr1.4:69194374-69194393 | MS.gene21234:CDS | 40.0% |
| !! | AGAAAAGCACTTACAGCTTG+TGG | + | chr1.4:69194771-69194790 | None:intergenic | 40.0% |
| !! | AGCTGAGTTGATGCTTAAGA+AGG | - | chr1.4:69194290-69194309 | MS.gene21234:CDS | 40.0% |
| !! | AGGACCTTTCTTTAGGATTC+GGG | - | chr1.4:69194641-69194660 | MS.gene21234:CDS | 40.0% |
| !! | GAGGACCTTTCTTTAGGATT+CGG | - | chr1.4:69194640-69194659 | MS.gene21234:CDS | 40.0% |
| !! | TGAGTTGATGCTTAAGAAGG+TGG | - | chr1.4:69194293-69194312 | MS.gene21234:CDS | 40.0% |
| AAACACGTTCAACCTCACCA+AGG | + | chr1.4:69194176-69194195 | None:intergenic | 45.0% | |
| ACCAACTGAGGAACTTTCGA+CGG | + | chr1.4:69194072-69194091 | None:intergenic | 45.0% | |
| CATTACCAGTCCCAGCATAA+AGG | + | chr1.4:69194368-69194387 | None:intergenic | 45.0% | |
| GTGTACTTGTTCTTAGCAGG+AGG | + | chr1.4:69193907-69193926 | None:intergenic | 45.0% | |
| TACTTGTTCTTAGCAGGAGG+AGG | + | chr1.4:69193904-69193923 | None:intergenic | 45.0% | |
| TCTTGCTGAGCCTTTATGCT+GGG | - | chr1.4:69194355-69194374 | MS.gene21234:CDS | 45.0% | |
| TGTGTCCAAAGTGAAAGGAG+TGG | - | chr1.4:69193849-69193868 | MS.gene21234:CDS | 45.0% | |
| TTACAGCTTGTGGTGAAGGT+TGG | + | chr1.4:69194761-69194780 | None:intergenic | 45.0% | |
| TTCTTGCTGAGCCTTTATGC+TGG | - | chr1.4:69194354-69194373 | MS.gene21234:CDS | 45.0% | |
| ! | TGCTTTGAATGACCTTGGTG+AGG | - | chr1.4:69194161-69194180 | MS.gene21234:CDS | 45.0% |
| !! | TGTGCTGCTTTGAATGACCT+TGG | - | chr1.4:69194156-69194175 | MS.gene21234:CDS | 45.0% |
| ACCGTCGAAAGTTCCTCAGT+TGG | - | chr1.4:69194068-69194087 | MS.gene21234:CDS | 50.0% | |
| ACTGCATCCGAATCATCTCC+TGG | - | chr1.4:69194890-69194909 | MS.gene21234:CDS | 50.0% | |
| CATGGACAAGGAAGCTGTGT+CGG | - | chr1.4:69194590-69194609 | MS.gene21234:CDS | 50.0% | |
| GCACTTACAGCTTGTGGTGA+AGG | + | chr1.4:69194765-69194784 | None:intergenic | 50.0% | |
| GCTGCAGAGGACCTTTCTTT+AGG | - | chr1.4:69194634-69194653 | MS.gene21234:CDS | 50.0% | |
| ! | AGATAGCTCCGATTGGTCAC+CGG | + | chr1.4:69194435-69194454 | None:intergenic | 50.0% |
| !! | ATCGCCGACTTCTGAAAGTG+CGG | + | chr1.4:69194730-69194749 | None:intergenic | 50.0% |
| !! | TGGTGCTATGAGCCACTTAG+AGG | - | chr1.4:69194704-69194723 | MS.gene21234:CDS | 50.0% |
| AGATCACCCCGGTGACCAAT+CGG | - | chr1.4:69194424-69194443 | MS.gene21234:CDS | 55.0% | |
| CACCGGGGTGATCTTCTTGA+GGG | + | chr1.4:69194418-69194437 | None:intergenic | 55.0% | |
| CTGAGCCTTTATGCTGGGAC+TGG | - | chr1.4:69194360-69194379 | MS.gene21234:CDS | 55.0% | |
| GAAGCTCTCAAGAGCTGCAG+AGG | - | chr1.4:69194621-69194640 | MS.gene21234:CDS | 55.0% | |
| GACCCTCAAGAAGATCACCC+CGG | - | chr1.4:69194413-69194432 | MS.gene21234:CDS | 55.0% | |
| GAGGCCGCACTTTCAGAAGT+CGG | - | chr1.4:69194723-69194742 | MS.gene21234:CDS | 55.0% | |
| TCACCGGGGTGATCTTCTTG+AGG | + | chr1.4:69194419-69194438 | None:intergenic | 55.0% | |
| ! | ATAGCTCCGATTGGTCACCG+GGG | + | chr1.4:69194433-69194452 | None:intergenic | 55.0% |
| ! | CTGAAAGTGCGGCCTCTAAG+TGG | + | chr1.4:69194719-69194738 | None:intergenic | 55.0% |
| ! | GATAGCTCCGATTGGTCACC+GGG | + | chr1.4:69194434-69194453 | None:intergenic | 55.0% |
| ! | GGAAGCTGTGTCGGTCTTTG+AGG | - | chr1.4:69194599-69194618 | MS.gene21234:CDS | 55.0% |
| ! | TGGTAAGTTTCGCGTTGGCG+CGG | + | chr1.4:69194333-69194352 | None:intergenic | 55.0% |
| !! | GTTGGTTGGTGTTGCAGTGC+AGG | - | chr1.4:69194551-69194570 | MS.gene21234:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 69193784 | 69194929 | 69193784 | ID=MS.gene21234 |
| chr1.4 | mRNA | 69193784 | 69194929 | 69193784 | ID=MS.gene21234.t1;Parent=MS.gene21234 |
| chr1.4 | exon | 69193784 | 69194929 | 69193784 | ID=MS.gene21234.t1.exon1;Parent=MS.gene21234.t1 |
| chr1.4 | CDS | 69193784 | 69194929 | 69193784 | ID=cds.MS.gene21234.t1;Parent=MS.gene21234.t1 |
| Gene Sequence |
| Protein sequence |
