Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21777.t1 | XP_003610819.2 | 97.3 | 1151 | 29 | 1 | 33 | 1183 | 110 | 1258 | 0.00E+00 | 2198.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21777.t1 | Q40983 | 90.9 | 1152 | 103 | 1 | 32 | 1183 | 108 | 1257 | 0.0e+00 | 2065.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21777.t1 | G7K558 | 97.3 | 1151 | 29 | 1 | 33 | 1183 | 110 | 1258 | 0.0e+00 | 2198.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050403 | MS.gene21777 | 0.821521 | 3.86E-53 | -1.69E-46 |
| MS.gene051838 | MS.gene21777 | 0.825492 | 4.55E-54 | -1.69E-46 |
| MS.gene051941 | MS.gene21777 | 0.838572 | 2.66E-57 | -1.69E-46 |
| MS.gene052414 | MS.gene21777 | 0.808047 | 3.75E-50 | -1.69E-46 |
| MS.gene053480 | MS.gene21777 | 0.804301 | 2.31E-49 | -1.69E-46 |
| MS.gene054107 | MS.gene21777 | 0.838543 | 2.70E-57 | -1.69E-46 |
| MS.gene055539 | MS.gene21777 | 0.861926 | 7.28E-64 | -1.69E-46 |
| MS.gene055741 | MS.gene21777 | 0.848868 | 4.66E-60 | -1.69E-46 |
| MS.gene055744 | MS.gene21777 | 0.841622 | 4.25E-58 | -1.69E-46 |
| MS.gene055909 | MS.gene21777 | 0.812398 | 4.33E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene21777 | 0.816097 | 6.59E-52 | -1.69E-46 |
| MS.gene056387 | MS.gene21777 | 0.812285 | 4.58E-51 | -1.69E-46 |
| MS.gene05666 | MS.gene21777 | 0.81457 | 1.44E-51 | -1.69E-46 |
| MS.gene056877 | MS.gene21777 | 0.803021 | 4.25E-49 | -1.69E-46 |
| MS.gene057019 | MS.gene21777 | 0.829125 | 6.13E-55 | -1.69E-46 |
| MS.gene058090 | MS.gene21777 | 0.843763 | 1.15E-58 | -1.69E-46 |
| MS.gene058120 | MS.gene21777 | 0.858926 | 5.89E-63 | -1.69E-46 |
| MS.gene058700 | MS.gene21777 | 0.809576 | 1.77E-50 | -1.69E-46 |
| MS.gene058948 | MS.gene21777 | 0.839758 | 1.31E-57 | -1.69E-46 |
| MS.gene059455 | MS.gene21777 | 0.80045 | 1.43E-48 | -1.69E-46 |
| MS.gene059674 | MS.gene21777 | 0.819167 | 1.34E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene21777 | 0.803535 | 3.33E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene21777 | 0.816293 | 5.96E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21777.t1 | MTR_5g007380 | 97.222 | 1152 | 30 | 1 | 32 | 1183 | 109 | 1258 | 0.0 | 2305 |
| MS.gene21777.t1 | MTR_8g101950 | 32.093 | 215 | 127 | 4 | 120 | 324 | 42 | 247 | 2.34e-22 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21777.t1 | AT5G42390 | 77.022 | 1162 | 256 | 7 | 30 | 1183 | 107 | 1265 | 0.0 | 1847 |
| MS.gene21777.t1 | AT5G42390 | 76.477 | 982 | 220 | 7 | 30 | 1003 | 107 | 1085 | 0.0 | 1549 |
| MS.gene21777.t1 | AT5G56730 | 22.368 | 608 | 366 | 17 | 103 | 697 | 27 | 541 | 2.25e-21 | 101 |
Find 275 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCTGGTCCATAACTTTA+TGG | 0.132951 | 5.2:+1709734 | None:intergenic |
| TTAGAATTTATAGCTGATTT+TGG | 0.161929 | 5.2:-1709072 | MS.gene21777:CDS |
| AGCTTTGTAGCATCTGTTTC+AGG | 0.198729 | 5.2:+1708493 | None:intergenic |
| CTAGTTGGTGGAACTTTATT+TGG | 0.204443 | 5.2:+1714957 | None:intergenic |
| TCAATCTGGCTAACAGTCTT+TGG | 0.220622 | 5.2:+1712737 | None:intergenic |
| TTTCTGAAATTATAAATTCT+AGG | 0.244955 | 5.2:-1705616 | MS.gene21777:intron |
| TTGAATTAAACTTGTTTGAT+AGG | 0.257126 | 5.2:-1705298 | MS.gene21777:CDS |
| GTTCGCAGACTTAAAGAATT+TGG | 0.278808 | 5.2:-1709886 | MS.gene21777:CDS |
| TGGAATTCCTGTCAACTATA+AGG | 0.281973 | 5.2:-1708428 | MS.gene21777:intron |
| ACCTTTCACTTCAGTTGAAT+TGG | 0.282488 | 5.2:-1710372 | MS.gene21777:CDS |
| TCGTATTAATACAAGATATA+AGG | 0.290322 | 5.2:-1711447 | MS.gene21777:intron |
| GATGATGGTACAAGTTCTTT+TGG | 0.293705 | 5.2:+1708568 | None:intergenic |
| CTTGCGGCGTGTGGCTCATC+TGG | 0.300514 | 5.2:+1715134 | None:intergenic |
| GAATTGGATCATAGTGATTC+TGG | 0.303764 | 5.2:-1710356 | MS.gene21777:CDS |
| GCATCTGTTTCAGGACTTAC+TGG | 0.305082 | 5.2:+1708502 | None:intergenic |
| TTCAAATTTGCACTGCTTCC+AGG | 0.314465 | 5.2:+1712414 | None:intergenic |
| TGATCTCCTTCCATCTGTTC+TGG | 0.315346 | 5.2:-1713362 | MS.gene21777:CDS |
| CAGAATTACGGACCGGGAAT+TGG | 0.320342 | 5.2:-1705092 | MS.gene21777:CDS |
| ATTCTCTATATTCATGCATT+GGG | 0.336741 | 5.2:-1704351 | MS.gene21777:CDS |
| CCTGCTTCTTCCTCTTCTAT+AGG | 0.342243 | 5.2:+1704046 | None:intergenic |
| TCAATCAAAAGTATTTAATA+AGG | 0.342883 | 5.2:-1712481 | MS.gene21777:CDS |
| TATTCATGCATTGGGGTTGC+TGG | 0.345542 | 5.2:-1704343 | MS.gene21777:CDS |
| TGGGCCTGCACCAAACCGTT+GGG | 0.347169 | 5.2:-1705900 | MS.gene21777:CDS |
| TATTTCTATCTCACCTTCCT+TGG | 0.349556 | 5.2:+1704626 | None:intergenic |
| TACGGAGGAGTTCATATCTA+TGG | 0.350048 | 5.2:-1707059 | MS.gene21777:CDS |
| GAACTCCTCCGTAGATTCTA+AGG | 0.352257 | 5.2:+1707069 | None:intergenic |
| AGGGCGTGTGCTTATATTGC+TGG | 0.356943 | 5.2:-1705920 | MS.gene21777:CDS |
| AAATAAATAGTACCTCGTTC+AGG | 0.357379 | 5.2:+1713335 | None:intergenic |
| TTTAACTCTGCAATCTGTTA+AGG | 0.357888 | 5.2:-1706675 | MS.gene21777:CDS |
| TACGCAAATCTCTGTATGTT+TGG | 0.358680 | 5.2:+1711510 | None:intergenic |
| TTCCATTTGCAAGGCGGCGC+CGG | 0.360128 | 5.2:+1708446 | None:intergenic |
| GAAAGTTTACTTGCTGTTGC+TGG | 0.362354 | 5.2:-1709703 | MS.gene21777:CDS |
| ATCTGTTCTTCTAATCCAAT+TGG | 0.362403 | 5.2:+1712857 | None:intergenic |
| AACTTTCATGCCCTTGTCTC+TGG | 0.364641 | 5.2:+1709719 | None:intergenic |
| GTAGCCACTCCAAGTGCATT+TGG | 0.367057 | 5.2:-1712585 | MS.gene21777:CDS |
| GTTCTTCAGGTATCCATTGT+AGG | 0.367240 | 5.2:-1706548 | MS.gene21777:intron |
| CACTAACCCTGTCCAATTCC+CGG | 0.374454 | 5.2:+1705080 | None:intergenic |
| AGTCTTGCCAGATTTGTTCC+TGG | 0.375851 | 5.2:-1716100 | MS.gene21777:CDS |
| ATTCTTTGGTTCAGCAGTTA+TGG | 0.376623 | 5.2:+1710304 | None:intergenic |
| TGTATCTTCTGTTGATAACT+TGG | 0.381510 | 5.2:-1709785 | MS.gene21777:CDS |
| CTCGACTGCTCACAAACTTA+TGG | 0.381657 | 5.2:-1706756 | MS.gene21777:CDS |
| TTTAAAGTTTCTTGTGGCCT+GGG | 0.385858 | 5.2:+1706472 | None:intergenic |
| GACGGAATAAACCAGATGTT+TGG | 0.388098 | 5.2:-1716219 | None:intergenic |
| CAGCTTCATGTCTCATAAGA+AGG | 0.389704 | 5.2:+1704708 | None:intergenic |
| CCTAAGCTGTCTGTTGGTCT+AGG | 0.390603 | 5.2:-1712540 | MS.gene21777:CDS |
| CAATCTGGCTAACAGTCTTT+GGG | 0.391293 | 5.2:+1712738 | None:intergenic |
| AGCAAGAGGCACAACTTTGC+TGG | 0.394383 | 5.2:+1716152 | None:intergenic |
| ACACATAATTGGTCACTTCC+TGG | 0.395057 | 5.2:-1712432 | MS.gene21777:CDS |
| GTCGAGCGTTCCAAGCTCTT+GGG | 0.396483 | 5.2:+1706773 | None:intergenic |
| AAGCTACATGATGAGGAAAC+TGG | 0.396918 | 5.2:-1708475 | MS.gene21777:CDS |
| ATATTTGACATACTTCAATC+TGG | 0.402392 | 5.2:+1712723 | None:intergenic |
| GTCCTCCTGTGACACATAAT+TGG | 0.404153 | 5.2:-1712443 | MS.gene21777:CDS |
| ATCCTAGATGAAAGGAACTT+TGG | 0.410743 | 5.2:+1713099 | None:intergenic |
| ACCCGGCGCCGCCTTGCAAA+TGG | 0.410811 | 5.2:-1708448 | MS.gene21777:CDS |
| CATTATCAATAGTCTCTAAC+AGG | 0.416233 | 5.2:+1705855 | None:intergenic |
| ACTCGAACGACGTTTCTTTG+TGG | 0.418295 | 5.2:+1716120 | None:intergenic |
| GAATGATTTCCGCAGATAAT+GGG | 0.419683 | 5.2:-1705727 | MS.gene21777:intron |
| ATGTACAAAGTAGCATTTGC+AGG | 0.420127 | 5.2:+1712782 | None:intergenic |
| AAAAGCTCCAGGAACAAATC+TGG | 0.423512 | 5.2:+1716093 | None:intergenic |
| TGCTGGAACGGTGCCGCCGC+CGG | 0.425729 | 5.2:+1716169 | None:intergenic |
| GCATGCAAGAATGTTCTTAG+AGG | 0.427394 | 5.2:-1705127 | MS.gene21777:CDS |
| CACACGCCGCAAGCACAGCT+TGG | 0.427484 | 5.2:-1715124 | MS.gene21777:CDS |
| ACCTCAGGTTCTGGTTCTAT+AGG | 0.427533 | 5.2:+1708913 | None:intergenic |
| ATTACAGATGCTATCAAAGC+TGG | 0.428025 | 5.2:-1708946 | MS.gene21777:CDS |
| CTGAGCAAAAGGTTTCCAAT+TGG | 0.428095 | 5.2:-1712872 | MS.gene21777:CDS |
| AAGTCAAATGCATACTGGTT+GGG | 0.428487 | 5.2:-1704680 | MS.gene21777:CDS |
| AAGTTTGTTTGATTCTGAAC+TGG | 0.428739 | 5.2:-1715072 | MS.gene21777:CDS |
| GAAGCAGGTGAGGGTTATCC+AGG | 0.429208 | 5.2:-1704031 | MS.gene21777:CDS |
| CAAACTTATGGTAGCAATGT+TGG | 0.429496 | 5.2:-1706744 | MS.gene21777:CDS |
| CAGCTTCATACAGAGAAGTT+AGG | 0.434183 | 5.2:+1704425 | None:intergenic |
| TTATCCAGGTGTTCTTCCTA+TGG | 0.434974 | 5.2:-1704017 | MS.gene21777:CDS |
| ATCCAAAGTTCCTTTCATCT+AGG | 0.443590 | 5.2:-1713101 | MS.gene21777:CDS |
| AGTCGAGCGTTCCAAGCTCT+TGG | 0.444884 | 5.2:+1706772 | None:intergenic |
| AGTTGACCTCTATGCAACTT+GGG | 0.447384 | 5.2:+1715008 | None:intergenic |
| TCCATTTGCAAGGCGGCGCC+GGG | 0.448024 | 5.2:+1708447 | None:intergenic |
| TAAGAGGTCCACACCTTGCT+TGG | 0.449108 | 5.2:+1705236 | None:intergenic |
| TAGAAGAACAGATAAAGAAG+TGG | 0.451137 | 5.2:-1712847 | MS.gene21777:CDS |
| CATAGAGGTCAACTAAAGAA+TGG | 0.455806 | 5.2:-1714999 | MS.gene21777:CDS |
| AACTCTTGTAGGTTTGATGA+TGG | 0.456850 | 5.2:+1708553 | None:intergenic |
| TAACTGCTGAACCAAAGAAT+TGG | 0.457405 | 5.2:-1710301 | MS.gene21777:CDS |
| CAAGCTGTGCTTGCGGCGTG+TGG | 0.457895 | 5.2:+1715125 | None:intergenic |
| CTGAAAACAAGCTGAGCAAA+AGG | 0.459642 | 5.2:-1712883 | MS.gene21777:CDS |
| GATCTGTGATTGTGGGTGTT+AGG | 0.459657 | 5.2:-1707934 | MS.gene21777:CDS |
| GATTCTCTATATTCATGCAT+TGG | 0.459730 | 5.2:-1704352 | MS.gene21777:CDS |
| TTCAGGACTTACTGGAATGA+AGG | 0.460656 | 5.2:+1708510 | None:intergenic |
| TAAAGAATTTGGTGTTACTC+AGG | 0.463511 | 5.2:-1709875 | MS.gene21777:CDS |
| TATGCAGATTCCAGTCAATA+AGG | 0.465500 | 5.2:-1711534 | MS.gene21777:intron |
| GTGGTGCAGGTTAATTCTGT+TGG | 0.467175 | 5.2:-1709105 | MS.gene21777:intron |
| CTAGTTCCTAAGCTGTCTGT+TGG | 0.468225 | 5.2:-1712546 | MS.gene21777:CDS |
| TAGTTGACCTCTATGCAACT+TGG | 0.469429 | 5.2:+1715007 | None:intergenic |
| ATTTATTGAGCTCACCTAGT+TGG | 0.470410 | 5.2:+1714942 | None:intergenic |
| CTGGGCCTGCACCAAACCGT+TGG | 0.472097 | 5.2:-1705901 | MS.gene21777:CDS |
| CACTTCTTGAAACTGCAAAC+CGG | 0.474006 | 5.2:+1706406 | None:intergenic |
| GCAGTAAAACCCCAACGGTT+TGG | 0.475100 | 5.2:+1705890 | None:intergenic |
| AAATTAAGTCAAATGCATAC+TGG | 0.476920 | 5.2:-1704685 | MS.gene21777:CDS |
| TTACGGACCGGGAATTGGAC+AGG | 0.478639 | 5.2:-1705087 | MS.gene21777:CDS |
| TCATTTCGATCATCTTCATC+CGG | 0.479008 | 5.2:-1706425 | MS.gene21777:CDS |
| GGCGTGATGCGGTTGATTGT+TGG | 0.479383 | 5.2:-1707992 | MS.gene21777:CDS |
| GCGTTCCAAGCTCTTGGGGA+TGG | 0.481044 | 5.2:+1706778 | None:intergenic |
| AATAAATAGTACCTCGTTCA+GGG | 0.483291 | 5.2:+1713336 | None:intergenic |
| GGTGTTCTTCCTATGGGAAG+AGG | 0.485249 | 5.2:-1704010 | MS.gene21777:CDS |
| TCTGCATAGCAACAGAATTA+CGG | 0.487986 | 5.2:-1705104 | MS.gene21777:CDS |
| TTGTTTGATAGGCTTAAACT+AGG | 0.489015 | 5.2:-1705287 | MS.gene21777:CDS |
| TATGTTTGGACCTTATTGAC+TGG | 0.491016 | 5.2:+1711524 | None:intergenic |
| TTCTTCGCTGCTTTCTCCAC+CGG | 0.491989 | 5.2:-1716188 | MS.gene21777:CDS |
| GGACTTACTGGAATGAAGGT+TGG | 0.492207 | 5.2:+1708514 | None:intergenic |
| TGCTCTGAGCCATAAAGTTA+TGG | 0.493905 | 5.2:-1709743 | MS.gene21777:CDS |
| TATCCAGGTGTTCTTCCTAT+GGG | 0.494978 | 5.2:-1704016 | MS.gene21777:CDS |
| TATTGAGCTCACCTAGTTGG+TGG | 0.495075 | 5.2:+1714945 | None:intergenic |
| CCGATCCATCCCCAAGAGCT+TGG | 0.495120 | 5.2:-1706783 | MS.gene21777:CDS |
| GCAAGCACAGCTTGGCCCGA+TGG | 0.496641 | 5.2:-1715116 | MS.gene21777:CDS |
| TAAGTCAAATGCATACTGGT+TGG | 0.496647 | 5.2:-1704681 | MS.gene21777:CDS |
| TTGTGGCCTGGGCTGTGCCA+AGG | 0.497094 | 5.2:+1706483 | None:intergenic |
| AGAAGATACATTATCAATCA+TGG | 0.497351 | 5.2:+1709798 | None:intergenic |
| TTCAATTAATATGTTCTGCA+AGG | 0.497787 | 5.2:-1712352 | MS.gene21777:intron |
| AGCCTTTCAATTGCTTCACA+TGG | 0.500883 | 5.2:-1706999 | MS.gene21777:CDS |
| CAATTGCTCCTTAGAATCTA+CGG | 0.502181 | 5.2:-1707077 | MS.gene21777:CDS |
| AGCAACAATTGCAGCAGGAA+GGG | 0.503734 | 5.2:+1709035 | None:intergenic |
| CAAAGAAAAGAGGATGGTTA+CGG | 0.506326 | 5.2:+1705657 | None:intergenic |
| CTATGCAACTTGGGGTGAGA+TGG | 0.506548 | 5.2:+1715017 | None:intergenic |
| GAAGAGGAAGAAGCAGGTGA+GGG | 0.507113 | 5.2:-1704040 | MS.gene21777:CDS |
| GCTGTAATGAGTCAGTTTGT+TGG | 0.511934 | 5.2:-1706650 | MS.gene21777:CDS |
| TCCAAGTGCATTTGGTGCAA+TGG | 0.515628 | 5.2:-1712577 | MS.gene21777:CDS |
| ATTGCTTCACATGGTGCTTG+AGG | 0.517776 | 5.2:-1706990 | MS.gene21777:intron |
| AAATGCTACTTTGTACATTG+TGG | 0.518304 | 5.2:-1712777 | MS.gene21777:CDS |
| AATGCTACTTTGTACATTGT+GGG | 0.519686 | 5.2:-1712776 | MS.gene21777:CDS |
| CTTGCTTGGAGTTGATGTTA+CGG | 0.521244 | 5.2:+1705250 | None:intergenic |
| AGAAGAACAGATAAAGAAGT+GGG | 0.521288 | 5.2:-1712846 | MS.gene21777:CDS |
| AGCTTCATGTCTCATAAGAA+GGG | 0.521533 | 5.2:+1704709 | None:intergenic |
| AAAGTTTACTTGCTGTTGCT+GGG | 0.522236 | 5.2:-1709702 | MS.gene21777:CDS |
| CAACAAACCTTATAGTTGAC+AGG | 0.522507 | 5.2:+1708421 | None:intergenic |
| CTTAAATGATACTGATGAGA+GGG | 0.524205 | 5.2:-1705939 | MS.gene21777:CDS |
| TGTTTGATAGGCTTAAACTA+GGG | 0.527227 | 5.2:-1705286 | MS.gene21777:CDS |
| TAAGAAAATTTCACGAGCGT+TGG | 0.527913 | 5.2:-1712811 | MS.gene21777:CDS |
| AACTCGTGTTGAAATATTTG+TGG | 0.529098 | 5.2:+1712387 | None:intergenic |
| CATAGTGATTCTGGAAGAGA+AGG | 0.529485 | 5.2:-1710347 | MS.gene21777:CDS |
| AAACCCCAACGGTTTGGTGC+AGG | 0.530874 | 5.2:+1705896 | None:intergenic |
| GATGAAGATGATCGAAATGA+AGG | 0.530990 | 5.2:+1706428 | None:intergenic |
| ATAGAGGTCAACTAAAGAAT+GGG | 0.531653 | 5.2:-1714998 | MS.gene21777:CDS |
| GATAATGCATCATCAGTCAA+TGG | 0.531854 | 5.2:-1705839 | MS.gene21777:intron |
| CTCAGTGAAGTCACCTACAA+TGG | 0.532677 | 5.2:+1706535 | None:intergenic |
| GGGCGTGTGCTTATATTGCT+GGG | 0.533864 | 5.2:-1705919 | MS.gene21777:CDS |
| CAGACTGCGCAAAATATAGC+AGG | 0.533899 | 5.2:-1704316 | MS.gene21777:intron |
| ATTGTTATACCAAAGAAAAG+AGG | 0.535218 | 5.2:+1705647 | None:intergenic |
| GAGGCACAACTTTGCTGGAA+CGG | 0.536343 | 5.2:+1716157 | None:intergenic |
| TGACAGGAATTCCATTTGCA+AGG | 0.538200 | 5.2:+1708437 | None:intergenic |
| TGAAAGGAACTTTGGATGGA+AGG | 0.538444 | 5.2:+1713107 | None:intergenic |
| ATTCTAAGGAGCAATTGATC+AGG | 0.540832 | 5.2:+1707083 | None:intergenic |
| CCAGGACATATCATGTATCA+AGG | 0.541261 | 5.2:-1704449 | MS.gene21777:intron |
| GGTTAATTCTGTTGGTGCTG+AGG | 0.541527 | 5.2:-1709097 | MS.gene21777:CDS |
| AGCATCTTCTGTTCCAAGGA+AGG | 0.542868 | 5.2:-1704639 | MS.gene21777:intron |
| TGAACAGTTGAAAGTGGATG+AGG | 0.542926 | 5.2:-1704374 | MS.gene21777:CDS |
| TACAAGCATCTTCTGTTCCA+AGG | 0.544828 | 5.2:-1704643 | MS.gene21777:CDS |
| CAAATAAAGTTCCACCAACT+AGG | 0.545112 | 5.2:-1714956 | MS.gene21777:intron |
| GTCGTGTTGGCAACTTCTCA+AGG | 0.545248 | 5.2:-1707895 | MS.gene21777:CDS |
| GCTGCTTTCTCCACCGGCGG+CGG | 0.545487 | 5.2:-1716182 | MS.gene21777:CDS |
| TAGATGAAAGGAACTTTGGA+TGG | 0.545911 | 5.2:+1713103 | None:intergenic |
| CCTATAGAAGAGGAAGAAGC+AGG | 0.546498 | 5.2:-1704046 | MS.gene21777:CDS |
| AAAGAATTTGGTGTTACTCA+GGG | 0.546941 | 5.2:-1709874 | MS.gene21777:CDS |
| ATGCGGTTGATTGTTGGTGG+TGG | 0.547818 | 5.2:-1707986 | MS.gene21777:CDS |
| TGTTTGATTCTGAACTGGAA+AGG | 0.548532 | 5.2:-1715067 | MS.gene21777:CDS |
| CTTTCAACTGTTCATATGCA+AGG | 0.549741 | 5.2:+1704383 | None:intergenic |
| TTCAGGGCATCCAGAACAGA+TGG | 0.549882 | 5.2:+1713352 | None:intergenic |
| AGTGTTCGCTATCTTTCAGA+AGG | 0.550950 | 5.2:+1709827 | None:intergenic |
| TTATGCAGTTCCTATAGAAG+AGG | 0.552327 | 5.2:-1704056 | MS.gene21777:intron |
| GCTGAGAGTTCTGATTCAAA+AGG | 0.553379 | 5.2:-1707956 | MS.gene21777:CDS |
| CCTAGACCAACAGACAGCTT+AGG | 0.554811 | 5.2:+1712540 | None:intergenic |
| GATGAAGAGGATGATGAGCA+AGG | 0.556827 | 5.2:-1714264 | MS.gene21777:CDS |
| AAGCAACAATTGCAGCAGGA+AGG | 0.556996 | 5.2:+1709034 | None:intergenic |
| AGTGACCAATTATGTGTCAC+AGG | 0.557165 | 5.2:+1712438 | None:intergenic |
| TGGCAACTTCTCAAGGGAGC+AGG | 0.557815 | 5.2:-1707888 | MS.gene21777:intron |
| CGTTATCCCGTAGAGTAAAA+CGG | 0.557836 | 5.2:+1707032 | None:intergenic |
| AAAGTTCATATCGAAGGAGT+TGG | 0.557965 | 5.2:-1709000 | MS.gene21777:CDS |
| AGAGTATCGAGTTGATTGCC+AGG | 0.558108 | 5.2:-1713025 | MS.gene21777:intron |
| GCCATTGCACCAAATGCACT+TGG | 0.558481 | 5.2:+1712576 | None:intergenic |
| AAGCTGTCTGTTGGTCTAGG+TGG | 0.558676 | 5.2:-1712537 | MS.gene21777:CDS |
| GAAGATGATCGAAATGAAGG+TGG | 0.558715 | 5.2:+1706431 | None:intergenic |
| AGATGCTATCAAAGCTGGGT+TGG | 0.561457 | 5.2:-1708941 | MS.gene21777:CDS |
| TCGAGCGTTCCAAGCTCTTG+GGG | 0.561613 | 5.2:+1706774 | None:intergenic |
| ATCGGGCCAAGCTGTGCTTG+CGG | 0.562924 | 5.2:+1715118 | None:intergenic |
| CCTTGGTAGTGGTAGGAGCA+TGG | 0.564021 | 5.2:+1714124 | None:intergenic |
| ATGATGTGCAGCATAGTGTC+TGG | 0.565568 | 5.2:-1706853 | MS.gene21777:intron |
| GCAACAATTGCAGCAGGAAG+GGG | 0.565568 | 5.2:+1709036 | None:intergenic |
| AGAAGAGGAAGAAGCAGGTG+AGG | 0.566942 | 5.2:-1704041 | MS.gene21777:CDS |
| CACCATGTGAAGCAATTGAA+AGG | 0.567117 | 5.2:+1706997 | None:intergenic |
| TGCATATGAACAGTTGAAAG+TGG | 0.567200 | 5.2:-1704380 | MS.gene21777:CDS |
| TCTGAACTGGAAAGGCTAGA+GGG | 0.569040 | 5.2:-1715059 | MS.gene21777:CDS |
| ATGCTACTTTGTACATTGTG+GGG | 0.570695 | 5.2:-1712775 | MS.gene21777:CDS |
| GCAGCAGGAAGGGGTGCGGT+AGG | 0.570918 | 5.2:+1709045 | None:intergenic |
| TTAATTAAAATACCTCGTCA+AGG | 0.570990 | 5.2:+1709671 | None:intergenic |
| TGGAACGGTGCCGCCGCCGG+TGG | 0.573638 | 5.2:+1716172 | None:intergenic |
| CAAGTTCCACATGCAACTGT+TGG | 0.574898 | 5.2:-1715158 | MS.gene21777:CDS |
| TTCAAAAGGATCTGTGATTG+TGG | 0.575661 | 5.2:-1707942 | MS.gene21777:CDS |
| AAGATGATCGAAATGAAGGT+GGG | 0.575983 | 5.2:+1706432 | None:intergenic |
| CTTAGTGAGGGAGGTCGTGT+TGG | 0.578924 | 5.2:-1707908 | MS.gene21777:CDS |
| CGTAACATCAACTCCAAGCA+AGG | 0.579372 | 5.2:-1705249 | MS.gene21777:intron |
| ATCTGTATAAGCATTTGAGC+GGG | 0.579721 | 5.2:+1714170 | None:intergenic |
| ACACAAGCAACAATTGCAGC+AGG | 0.579788 | 5.2:+1709030 | None:intergenic |
| AGACTACCTTGGCACAGCCC+AGG | 0.579817 | 5.2:-1706489 | MS.gene21777:CDS |
| TGCTACAAAGCTACATGATG+AGG | 0.580067 | 5.2:-1708482 | MS.gene21777:CDS |
| CCAAGCTCTTGGGGATGGAT+CGG | 0.580093 | 5.2:+1706783 | None:intergenic |
| TCAGTTTGTTGGAGATAACA+TGG | 0.581115 | 5.2:-1706639 | MS.gene21777:CDS |
| TGCTGGATCGATAGATGAAG+AGG | 0.581607 | 5.2:-1714277 | MS.gene21777:CDS |
| TGAAAGATCAACAAATACAA+TGG | 0.581989 | 5.2:-1712505 | MS.gene21777:CDS |
| ACAACAGTCAGAGATTCACT+AGG | 0.582922 | 5.2:-1705341 | MS.gene21777:CDS |
| GTTGACCTCTATGCAACTTG+GGG | 0.585763 | 5.2:+1715009 | None:intergenic |
| GCACACATGGAAGTTCATGC+TGG | 0.587346 | 5.2:-1714294 | MS.gene21777:CDS |
| AATGGTCCAAACCTTGGTAG+TGG | 0.587681 | 5.2:+1714113 | None:intergenic |
| CTTCCCATAGGAAGAACACC+TGG | 0.588509 | 5.2:+1704013 | None:intergenic |
| TTACAGATGCTATCAAAGCT+GGG | 0.590155 | 5.2:-1708945 | MS.gene21777:CDS |
| TATTAGAGTTGCTGTTCATG+AGG | 0.590651 | 5.2:-1710270 | MS.gene21777:intron |
| GTAGATAAACCTCTTCCCAT+AGG | 0.595256 | 5.2:+1704001 | None:intergenic |
| TTCTCTATATTCATGCATTG+GGG | 0.595277 | 5.2:-1704350 | MS.gene21777:CDS |
| ACTGGTGTAGACAATGAGAA+AGG | 0.595304 | 5.2:-1712612 | MS.gene21777:CDS |
| CTTATGGTAGCAATGTTGGA+TGG | 0.595666 | 5.2:-1706740 | MS.gene21777:CDS |
| TTCTGAACTGGAAAGGCTAG+AGG | 0.596519 | 5.2:-1715060 | MS.gene21777:CDS |
| GTTAAATTCTCTAGTGAACT+CGG | 0.596523 | 5.2:+1706692 | None:intergenic |
| TTGATAGGCTTAAACTAGGG+TGG | 0.596819 | 5.2:-1705283 | MS.gene21777:CDS |
| TCGTGTTGAAATATTTGTGG+TGG | 0.597128 | 5.2:+1712390 | None:intergenic |
| GGGTGTTAGGACACTTAGTG+AGG | 0.597948 | 5.2:-1707921 | MS.gene21777:CDS |
| CATGGATGTGAAACACTGTA+TGG | 0.598973 | 5.2:+1714142 | None:intergenic |
| GGGCCTGCACCAAACCGTTG+GGG | 0.601511 | 5.2:-1705899 | MS.gene21777:CDS |
| TAATTAAAATACCTCGTCAA+GGG | 0.601557 | 5.2:+1709672 | None:intergenic |
| GTGATGCGGTTGATTGTTGG+TGG | 0.602048 | 5.2:-1707989 | MS.gene21777:CDS |
| CTGAACTGGAAAGGCTAGAG+GGG | 0.602586 | 5.2:-1715058 | MS.gene21777:CDS |
| TCCAATTCAACTGAAGTGAA+AGG | 0.603293 | 5.2:+1710371 | None:intergenic |
| TCTAAGGATAAGCTTCGTCA+TGG | 0.603518 | 5.2:-1716046 | MS.gene21777:intron |
| TGTGGAAGCAAGACAGCAAG+AGG | 0.605809 | 5.2:+1716138 | None:intergenic |
| TGCACCAAATGCACTTGGAG+TGG | 0.606182 | 5.2:+1712581 | None:intergenic |
| TGCTACTTTGTACATTGTGG+GGG | 0.606858 | 5.2:-1712774 | MS.gene21777:CDS |
| TCATGTATTCTAGACTACCT+TGG | 0.607465 | 5.2:-1706500 | MS.gene21777:CDS |
| TTCGCTGCTTTCTCCACCGG+CGG | 0.607765 | 5.2:-1716185 | MS.gene21777:CDS |
| AAAGTTATGGACCAGAGACA+AGG | 0.613208 | 5.2:-1709730 | MS.gene21777:CDS |
| AATTCAACTGAAGTGAAAGG+TGG | 0.613252 | 5.2:+1710374 | None:intergenic |
| AATTGCAGCAGGAAGGGGTG+CGG | 0.613415 | 5.2:+1709041 | None:intergenic |
| TTCTCTAGTGAACTCGGTGT+AGG | 0.615673 | 5.2:+1706698 | None:intergenic |
| TGTACAAAGTAGCATTTGCA+GGG | 0.617045 | 5.2:+1712783 | None:intergenic |
| CAGGAATTCCATTTGCAAGG+CGG | 0.620446 | 5.2:+1708440 | None:intergenic |
| GTATGAAGCTGCTACTGTTG+AGG | 0.621251 | 5.2:-1704413 | MS.gene21777:CDS |
| ATAGCAACAGAATTACGGAC+CGG | 0.622001 | 5.2:-1705099 | MS.gene21777:CDS |
| CAACAGTCAGAGATTCACTA+GGG | 0.622688 | 5.2:-1705340 | MS.gene21777:CDS |
| TTCAGCAGTTATGGTAAGCG+TGG | 0.628063 | 5.2:+1710313 | None:intergenic |
| TTATACCAAAGAAAAGAGGA+TGG | 0.630292 | 5.2:+1705651 | None:intergenic |
| TCTTAAATGATACTGATGAG+AGG | 0.630526 | 5.2:-1705940 | MS.gene21777:CDS |
| TCTGATGCTGTACCAACAGA+AGG | 0.632220 | 5.2:-1705698 | MS.gene21777:CDS |
| CATCAGCAGTAAAACCCCAA+CGG | 0.634961 | 5.2:+1705885 | None:intergenic |
| GATGCTGTACCAACAGAAGG+TGG | 0.635426 | 5.2:-1705695 | MS.gene21777:CDS |
| ATGAGGAAACTGGAATCACC+CGG | 0.635803 | 5.2:-1708465 | MS.gene21777:CDS |
| GGGCATCCAGAACAGATGGA+AGG | 0.639515 | 5.2:+1713356 | None:intergenic |
| TCTCACCCCAAGTTGCATAG+AGG | 0.644862 | 5.2:-1715014 | MS.gene21777:CDS |
| TCTAAAAGTGAAACTCAAAG+TGG | 0.644914 | 5.2:-1708013 | MS.gene21777:CDS |
| TCAAAAGGATCTGTGATTGT+GGG | 0.645874 | 5.2:-1707941 | MS.gene21777:CDS |
| TCGTGTTGGCAACTTCTCAA+GGG | 0.646722 | 5.2:-1707894 | MS.gene21777:CDS |
| GTGTTCGCTATCTTTCAGAA+GGG | 0.649126 | 5.2:+1709828 | None:intergenic |
| TACGGACCGGGAATTGGACA+GGG | 0.649583 | 5.2:-1705086 | MS.gene21777:intron |
| AAGTTATGGACCAGAGACAA+GGG | 0.651760 | 5.2:-1709729 | MS.gene21777:CDS |
| TCCTATAGAACCAGAACCTG+AGG | 0.651863 | 5.2:-1708914 | MS.gene21777:intron |
| AATCTGTATAAGCATTTGAG+CGG | 0.651909 | 5.2:+1714169 | None:intergenic |
| TCTGGACCAACAGTTGCATG+TGG | 0.667090 | 5.2:+1715152 | None:intergenic |
| GGTGTTAGGACACTTAGTGA+GGG | 0.668232 | 5.2:-1707920 | MS.gene21777:CDS |
| TAGCAACAGAATTACGGACC+GGG | 0.668758 | 5.2:-1705098 | MS.gene21777:CDS |
| GTTAGGACACTTAGTGAGGG+AGG | 0.672451 | 5.2:-1707917 | MS.gene21777:CDS |
| TGTTCTGGATGCCCTGAACG+AGG | 0.675029 | 5.2:-1713347 | MS.gene21777:intron |
| CCATGCTCCTACCACTACCA+AGG | 0.675098 | 5.2:-1714124 | MS.gene21777:intron |
| GTCCAAACCTTGGTAGTGGT+AGG | 0.675270 | 5.2:+1714117 | None:intergenic |
| AGAAAAGAGGATGGTTACGG+AGG | 0.677970 | 5.2:+1705660 | None:intergenic |
| GGATGTGAAACACTGTATGG+TGG | 0.682829 | 5.2:+1714145 | None:intergenic |
| AAACTCAAAGTGGCGTGATG+CGG | 0.685110 | 5.2:-1708003 | MS.gene21777:CDS |
| TGTAGGTGACTTCACTGAGG+AGG | 0.686813 | 5.2:-1706531 | MS.gene21777:CDS |
| TGGGACAGTTACCCTTGACG+AGG | 0.705381 | 5.2:-1709683 | MS.gene21777:intron |
| GACCAATTATGTGTCACAGG+AGG | 0.706544 | 5.2:+1712441 | None:intergenic |
| GAGGTTTATCTACAATGACA+CGG | 0.713196 | 5.2:-1703991 | MS.gene21777:CDS |
| TTGCTCCTTAGAATCTACGG+AGG | 0.759582 | 5.2:-1707074 | MS.gene21777:CDS |
| GTTTGTTGGAGATAACATGG+AGG | 0.773308 | 5.2:-1706636 | MS.gene21777:intron |
| CATTGTAGGTGACTTCACTG+AGG | 0.783685 | 5.2:-1706534 | MS.gene21777:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1703979 | 1716226 | 1703979 | ID=MS.gene21777 |
| chr5.2 | mRNA | 1703979 | 1716226 | 1703979 | ID=MS.gene21777.t1;Parent=MS.gene21777 |
| chr5.2 | exon | 1716047 | 1716226 | 1716047 | ID=MS.gene21777.t1.exon1;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1716047 | 1716226 | 1716047 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1714957 | 1715192 | 1714957 | ID=MS.gene21777.t1.exon2;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1714957 | 1715192 | 1714957 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1714125 | 1714323 | 1714125 | ID=MS.gene21777.t1.exon3;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1714125 | 1714323 | 1714125 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1713348 | 1713392 | 1713348 | ID=MS.gene21777.t1.exon4;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1713348 | 1713392 | 1713348 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1713026 | 1713133 | 1713026 | ID=MS.gene21777.t1.exon5;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1713026 | 1713133 | 1713026 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1712736 | 1712924 | 1712736 | ID=MS.gene21777.t1.exon6;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1712736 | 1712924 | 1712736 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1712353 | 1712649 | 1712353 | ID=MS.gene21777.t1.exon7;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1712353 | 1712649 | 1712353 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1711448 | 1711549 | 1711448 | ID=MS.gene21777.t1.exon8;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1711448 | 1711549 | 1711448 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1710271 | 1710405 | 1710271 | ID=MS.gene21777.t1.exon9;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1710271 | 1710405 | 1710271 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1709684 | 1709908 | 1709684 | ID=MS.gene21777.t1.exon10;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1709684 | 1709908 | 1709684 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1708915 | 1709118 | 1708915 | ID=MS.gene21777.t1.exon11;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1708915 | 1709118 | 1708915 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1708429 | 1708599 | 1708429 | ID=MS.gene21777.t1.exon12;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1708429 | 1708599 | 1708429 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1707889 | 1708038 | 1707889 | ID=MS.gene21777.t1.exon13;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1707889 | 1708038 | 1707889 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1706991 | 1707128 | 1706991 | ID=MS.gene21777.t1.exon14;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1706991 | 1707128 | 1706991 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1706637 | 1706864 | 1706637 | ID=MS.gene21777.t1.exon15;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1706637 | 1706864 | 1706637 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1706409 | 1706561 | 1706409 | ID=MS.gene21777.t1.exon16;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1706409 | 1706561 | 1706409 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1705840 | 1705966 | 1705840 | ID=MS.gene21777.t1.exon17;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1705840 | 1705966 | 1705840 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1705617 | 1705734 | 1705617 | ID=MS.gene21777.t1.exon18;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1705617 | 1705734 | 1705617 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1705250 | 1705370 | 1705250 | ID=MS.gene21777.t1.exon19;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1705250 | 1705370 | 1705250 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1705087 | 1705167 | 1705087 | ID=MS.gene21777.t1.exon20;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1705087 | 1705167 | 1705087 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1704640 | 1704741 | 1704640 | ID=MS.gene21777.t1.exon21;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1704640 | 1704741 | 1704640 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1704317 | 1704467 | 1704317 | ID=MS.gene21777.t1.exon22;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1704317 | 1704467 | 1704317 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| chr5.2 | exon | 1703979 | 1704070 | 1703979 | ID=MS.gene21777.t1.exon23;Parent=MS.gene21777.t1 |
| chr5.2 | CDS | 1703979 | 1704070 | 1703979 | ID=cds.MS.gene21777.t1;Parent=MS.gene21777.t1 |
| Gene Sequence |
| Protein sequence |
