AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05666


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05666.t1 MTR_3g060240 93.878 245 14 1 1 244 113 357 3.50e-168 482
MS.gene05666.t1 MTR_3g060220 93.416 243 16 0 1 243 114 356 7.30e-167 478
MS.gene05666.t1 MTR_3g060220 93.416 243 16 0 1 243 113 355 1.26e-166 478
MS.gene05666.t1 MTR_3g060280 74.494 247 58 3 1 244 123 367 8.11e-135 387
MS.gene05666.t1 MTR_3g060280 74.494 247 58 3 1 244 123 367 3.14e-133 388
MS.gene05666.t1 MTR_3g060280 74.494 247 58 3 1 244 123 367 4.73e-133 387
MS.gene05666.t1 MTR_3g060280 74.494 247 58 3 1 244 123 367 1.24e-131 389
MS.gene05666.t1 MTR_8g063270 42.915 247 130 5 4 243 98 340 3.03e-63 211
MS.gene05666.t1 MTR_8g086600 43.320 247 130 5 4 243 294 537 3.55e-63 213
MS.gene05666.t1 MTR_3g030040 43.320 247 130 6 4 243 369 612 4.44e-63 213
MS.gene05666.t1 MTR_1g098550 43.200 250 132 5 1 243 382 628 4.72e-63 213
MS.gene05666.t1 MTR_1g098550 43.200 250 132 5 1 243 386 632 4.91e-63 213
MS.gene05666.t1 MTR_8g063270 42.915 247 130 5 4 243 303 545 1.90e-62 210
MS.gene05666.t1 MTR_8g092590 42.000 250 135 6 1 243 384 630 4.12e-62 210
MS.gene05666.t1 MTR_2g087900 40.816 245 126 5 1 238 113 345 5.09e-61 196
MS.gene05666.t1 MTR_2g016630 42.510 247 132 4 4 243 279 522 6.03e-61 206
MS.gene05666.t1 MTR_8g037260 41.700 247 134 5 4 243 369 612 9.67e-61 206
MS.gene05666.t1 MTR_3g107520 42.510 247 132 5 4 243 379 622 1.44e-60 206
MS.gene05666.t1 MTR_4g130510 40.486 247 137 5 4 243 349 592 5.92e-60 201
MS.gene05666.t1 MTR_2g087900 41.152 243 128 5 1 238 113 345 1.17e-59 196
MS.gene05666.t1 MTR_4g130510 40.486 247 137 5 4 243 349 592 2.08e-59 201
MS.gene05666.t1 MTR_7g106680 41.296 247 135 5 4 243 327 570 5.70e-59 201
MS.gene05666.t1 MTR_4g130510 40.486 247 137 5 4 243 349 592 6.27e-59 201
MS.gene05666.t1 MTR_2g087900 41.152 243 128 5 1 238 113 345 7.57e-59 196
MS.gene05666.t1 MTR_3g007770 43.697 238 124 4 4 234 336 570 1.79e-58 199
MS.gene05666.t1 MTR_2g087960 38.211 246 139 4 1 242 114 350 2.16e-58 194
MS.gene05666.t1 MTR_2g087900 41.152 243 128 5 1 238 113 345 5.77e-58 196
MS.gene05666.t1 MTR_2g087960 38.211 246 139 4 1 242 114 350 1.62e-57 195
MS.gene05666.t1 MTR_2g035780 39.600 250 141 5 1 243 317 563 1.62e-57 197
MS.gene05666.t1 MTR_2g087980 39.431 246 133 5 1 242 107 340 5.11e-57 193
MS.gene05666.t1 MTR_4g050000 40.650 246 132 5 1 242 109 344 2.20e-56 192
MS.gene05666.t1 MTR_2g087950 40.081 247 131 4 1 241 109 344 8.37e-56 191
MS.gene05666.t1 MTR_1g069605 40.081 247 138 5 4 243 209 452 1.71e-54 187
MS.gene05666.t1 MTR_4g088225 41.102 236 131 3 2 237 119 346 7.41e-54 184
MS.gene05666.t1 MTR_4g088225 41.102 236 131 3 2 237 119 346 1.01e-53 184
MS.gene05666.t1 MTR_4g130510 35.587 281 137 6 4 243 349 626 7.93e-53 184
MS.gene05666.t1 MTR_3g005560 38.554 249 120 5 2 243 106 328 1.15e-51 173
MS.gene05666.t1 MTR_3g450800 40.084 237 112 5 2 233 58 269 2.22e-51 177
MS.gene05666.t1 MTR_0011s0020 39.676 247 122 5 2 244 106 329 4.93e-51 176
MS.gene05666.t1 MTR_1g073740 41.772 237 119 5 2 233 120 342 5.24e-51 177
MS.gene05666.t1 MTR_5g029190 34.237 295 138 8 4 243 371 664 1.22e-50 177
MS.gene05666.t1 MTR_2g037830 40.678 236 113 5 2 233 106 318 1.63e-50 172
MS.gene05666.t1 MTR_3g005560 39.749 239 111 5 2 233 106 318 1.95e-50 173
MS.gene05666.t1 MTR_4g077910 36.271 295 132 9 4 243 392 685 4.60e-50 176
MS.gene05666.t1 MTR_3g005560 39.749 239 111 5 2 233 106 318 6.99e-50 173
MS.gene05666.t1 MTR_2g037830 40.678 236 113 5 2 233 106 318 1.37e-49 172
MS.gene05666.t1 MTR_1g039445 33.916 286 135 7 1 233 361 645 2.87e-49 173
MS.gene05666.t1 MTR_7g109200 35.017 297 138 7 1 243 413 708 4.87e-49 172
MS.gene05666.t1 MTR_1g039480 35.294 289 121 9 4 233 378 659 8.70e-49 172
MS.gene05666.t1 MTR_2g438220 34.266 286 131 8 4 233 278 562 1.94e-47 168
MS.gene05666.t1 MTR_7g116230 36.923 260 143 7 4 243 248 506 5.68e-46 164
MS.gene05666.t1 MTR_2g087900 36.735 147 83 3 1 142 113 254 1.46e-25 101
MS.gene05666.t1 MTR_3g091270 30.000 240 123 5 4 243 129 323 1.61e-23 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05666.t1 AT1G55850 57.143 245 98 3 1 244 127 365 1.06e-97 301
MS.gene05666.t1 AT4G23990 45.344 247 128 3 1 243 136 379 5.98e-69 226
MS.gene05666.t1 AT4G24010 46.639 238 120 3 1 234 117 351 3.43e-67 221
MS.gene05666.t1 AT4G24000 44.939 247 122 4 1 243 114 350 3.98e-66 218
MS.gene05666.t1 AT5G05170 42.105 247 133 5 4 243 357 600 6.04e-62 209
MS.gene05666.t1 AT4G39350 41.200 250 137 6 1 243 372 618 1.52e-61 208
MS.gene05666.t1 AT4G18780 42.105 247 133 4 4 243 282 525 4.45e-61 207
MS.gene05666.t1 AT5G64740 42.000 250 135 6 1 243 371 617 4.83e-61 207
MS.gene05666.t1 AT5G17420 41.296 247 135 5 4 243 336 579 7.54e-61 206
MS.gene05666.t1 AT4G32410 41.296 247 135 5 4 243 373 616 7.91e-61 206
MS.gene05666.t1 AT5G09870 41.600 250 136 6 1 243 359 605 1.17e-60 206
MS.gene05666.t1 AT2G25540 41.700 247 134 4 4 243 353 596 3.45e-60 204
MS.gene05666.t1 AT2G21770 42.105 247 133 5 4 243 380 623 8.80e-60 203
MS.gene05666.t1 AT5G44030 40.486 247 137 5 4 243 34 277 2.76e-58 197
MS.gene05666.t1 AT5G44030 40.000 250 140 5 1 243 310 556 1.09e-57 197
MS.gene05666.t1 AT5G44030 40.000 250 140 5 1 243 339 585 1.30e-57 197
MS.gene05666.t1 AT1G32180 36.184 304 127 9 4 243 225 525 1.26e-52 183
MS.gene05666.t1 AT1G32180 36.184 304 127 9 4 243 225 525 1.26e-52 183
MS.gene05666.t1 AT3G03050 36.949 295 128 9 4 243 397 688 2.87e-52 182
MS.gene05666.t1 AT4G38190 34.354 294 135 9 4 242 375 665 1.34e-49 174
MS.gene05666.t1 AT5G16910 36.177 293 133 9 4 243 400 691 1.66e-49 174
MS.gene05666.t1 AT1G02730 35.906 298 131 8 4 243 421 716 1.70e-49 174
MS.gene05666.t1 AT2G33100 35.439 285 128 7 4 233 286 569 1.21e-48 171
MS.gene05666.t1 AT2G33100 35.439 285 128 7 4 233 286 569 1.21e-48 171
MS.gene05666.t1 AT2G32620 40.000 235 116 7 1 224 111 331 1.24e-48 168
MS.gene05666.t1 AT2G32620 40.000 235 116 7 1 224 15 235 3.22e-48 168
MS.gene05666.t1 AT2G32620 40.000 235 116 7 1 224 111 331 3.41e-48 167
MS.gene05666.t1 AT2G32620 40.000 235 116 7 1 224 111 331 8.96e-48 168
MS.gene05666.t1 AT2G32540 39.474 228 127 5 1 224 111 331 2.13e-47 167
MS.gene05666.t1 AT4G15320 38.559 236 134 5 1 232 111 339 2.00e-46 164
MS.gene05666.t1 AT4G15320 38.559 236 134 5 1 232 111 339 2.11e-46 164
MS.gene05666.t1 AT2G32530 38.596 228 129 5 1 224 111 331 2.84e-46 164
MS.gene05666.t1 AT4G15290 38.136 236 135 5 1 232 111 339 1.44e-45 162
MS.gene05666.t1 AT4G15320 37.652 247 136 6 1 232 111 354 6.62e-45 160
MS.gene05666.t1 AT2G32610 38.261 230 128 6 1 224 111 332 8.01e-44 157
MS.gene05666.t1 AT4G15320 32.270 282 134 6 1 232 111 385 1.16e-38 142
MS.gene05666.t1 AT4G23990 41.212 165 92 2 83 243 2 165 7.15e-37 136
MS.gene05666.t1 AT4G24000 41.212 165 85 3 83 243 2 158 5.33e-35 131
MS.gene05666.t1 AT4G15320 29.595 321 134 8 1 232 111 428 3.63e-33 127

Find 45 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGCTCTTTAGCATTATT+AGG 0.150756 3.2:+51470226 None:intergenic
TATGCCCACCTTGGTATATT+TGG 0.175535 3.2:-51468985 MS.gene05666:CDS
CTTTGAAGTTATGATGAAAT+TGG 0.227274 3.2:+51468946 None:intergenic
TGCTTTGAGTATGTTTCTTC+TGG 0.240123 3.2:+51469283 None:intergenic
CAAACAATTCTCAATCTCTA+AGG 0.258363 3.2:-51468666 MS.gene05666:CDS
ACCTTGAATCTCTTGCAAAA+TGG 0.308345 3.2:+51470295 None:intergenic
TGATTACTTTGTTACCTTGA+TGG 0.308348 3.2:+51470201 None:intergenic
GGATGCACTTTGCTTCTTCA+TGG 0.325256 3.2:-51468644 MS.gene05666:CDS
ATAGCTCTTTAGCATTATTA+GGG 0.330839 3.2:+51470227 None:intergenic
TTTGAAGTTATGATGAAATT+GGG 0.331599 3.2:+51468947 None:intergenic
CTACTCGACTTTCCATATCT+TGG 0.397111 3.2:+51469332 None:intergenic
TTCTGGTACTTTACCCAACT+TGG 0.398887 3.2:+51469300 None:intergenic
TAATAATGCTAAAGAGCTAT+TGG 0.409363 3.2:-51470224 MS.gene05666:CDS
ATTATTAGGGTAAGTGTCTA+AGG 0.410530 3.2:+51470240 None:intergenic
ATAGATACTGCTTCATAGAA+AGG 0.416841 3.2:-51469036 MS.gene05666:intron
ATAGAGAATGTACCAAGATA+TGG 0.432648 3.2:-51469344 MS.gene05666:intron
TTTCATCATAACTTCAAAGC+TGG 0.443682 3.2:-51468942 MS.gene05666:CDS
CTTCTAAATTTGCTAAGCAT+TGG 0.454514 3.2:-51470321 MS.gene05666:CDS
TTCTTTACTTGTAGCTTATG+AGG 0.455957 3.2:-51468539 MS.gene05666:CDS
AACAAACCCATCTTCATCTC+TGG 0.467241 3.2:+51469007 None:intergenic
CTTCTTCATGGATGAAGAGA+AGG 0.469449 3.2:-51468632 MS.gene05666:CDS
GTAGAAAATGCATCCAAGTT+GGG 0.487538 3.2:-51469313 MS.gene05666:CDS
AGAAACATACTCAAAGCATA+AGG 0.489166 3.2:-51469278 MS.gene05666:CDS
AAGGTCTTGAAGTATGCATC+TGG 0.496793 3.2:+51470259 None:intergenic
ACATGAAATTGCCTTTGTGC+AGG 0.505115 3.2:-51468608 MS.gene05666:CDS
TAAAGAGCTATTGGCCATCA+AGG 0.510787 3.2:-51470215 MS.gene05666:intron
AGTAGAAAATGCATCCAAGT+TGG 0.534174 3.2:-51469314 MS.gene05666:CDS
AAGTATGCATCTGGCGACCT+AGG 0.537937 3.2:+51470268 None:intergenic
TGTCATCAATGATTAGCAAT+GGG 0.542769 3.2:-51468723 MS.gene05666:CDS
AAACAATTCTCAATCTCTAA+GGG 0.548566 3.2:-51468665 MS.gene05666:CDS
GTGTATCTTTCAGATGATGC+TGG 0.557262 3.2:-51470376 MS.gene05666:CDS
GACAATGCCAGAGATGAAGA+TGG 0.557521 3.2:-51469014 MS.gene05666:CDS
TAACACAGTATTATCTGTGA+TGG 0.561776 3.2:-51470428 MS.gene05666:CDS
TTGAAGTTATGATGAAATTG+GGG 0.563444 3.2:+51468948 None:intergenic
GTGTCATCAATGATTAGCAA+TGG 0.569343 3.2:-51468724 MS.gene05666:CDS
AGCTGGAGCTATGAATTCAC+TGG 0.575270 3.2:-51468925 MS.gene05666:intron
TGGGTTTGTTATGCCCACCT+TGG 0.587789 3.2:-51468994 MS.gene05666:CDS
CGAGCCAAATATACCAAGGT+GGG 0.599351 3.2:+51468981 None:intergenic
TTCTTCATGGATGAAGAGAA+GGG 0.601789 3.2:-51468631 MS.gene05666:CDS
ACAATGCCAGAGATGAAGAT+GGG 0.604837 3.2:-51469013 MS.gene05666:CDS
CTCACGAGCCAAATATACCA+AGG 0.657691 3.2:+51468977 None:intergenic
AGAGATTCAAGGTTGAACCT+AGG 0.664021 3.2:-51470285 MS.gene05666:CDS
GTACTTGAAGAATTGTGTCA+TGG 0.678322 3.2:+51469218 None:intergenic
ACGAGCCAAATATACCAAGG+TGG 0.686997 3.2:+51468980 None:intergenic
GCACTGAGGAGCCTGCACAA+AGG 0.703435 3.2:+51468597 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTACAAATAAAATTTG+CGG - chr3.2:51468969-51468988 MS.gene05666:CDS 10.0%
!!! TTTATTGTTTGTTTTTAATT+AGG + chr3.2:51469339-51469358 None:intergenic 10.0%
!! AATTTAATATGACAATTAGT+TGG - chr3.2:51469891-51469910 MS.gene05666:intron 15.0%
!! ATTAAAATTATCTTCAATGA+TGG - chr3.2:51469106-51469125 MS.gene05666:intron 15.0%
!! TCATCAATATGTATAAATAA+TGG - chr3.2:51469579-51469598 MS.gene05666:intron 15.0%
!! TTAATTTCTTATTATGTTTG+AGG - chr3.2:51469507-51469526 MS.gene05666:intron 15.0%
!!! AAATATTTTGGTTAACTTTT+AGG - chr3.2:51468887-51468906 MS.gene05666:intron 15.0%
!!! ATTGAAGATAATTTTAATTG+AGG + chr3.2:51469104-51469123 None:intergenic 15.0%
!!! TCTTCAAAAAGATAATTTTT+TGG - chr3.2:51469536-51469555 MS.gene05666:intron 15.0%
!!! TTTAATTTCATATGATTAAG+TGG + chr3.2:51469309-51469328 None:intergenic 15.0%
!! AGATTGTTTAATAGTGAAAT+TGG - chr3.2:51469410-51469429 MS.gene05666:intron 20.0%
!! ATCACAAAAAATGACATATA+CGG - chr3.2:51470402-51470421 MS.gene05666:CDS 20.0%
!! ATGCATTCAAAAATTAAACT+TGG + chr3.2:51470126-51470145 None:intergenic 20.0%
!! TAAACTTTCAAATACTTCAA+GGG - chr3.2:51469839-51469858 MS.gene05666:intron 20.0%
!! TCGTGAATTTAAATTCAATT+AGG - chr3.2:51470099-51470118 MS.gene05666:intron 20.0%
!! TGAAATCACTAAGAAATAAT+GGG + chr3.2:51469464-51469483 None:intergenic 20.0%
!! TTAAACTTTCAAATACTTCA+AGG - chr3.2:51469838-51469857 MS.gene05666:intron 20.0%
!! TTGAAATCACTAAGAAATAA+TGG + chr3.2:51469465-51469484 None:intergenic 20.0%
!! TTTAAATTCACGATCAATAT+AGG + chr3.2:51470092-51470111 None:intergenic 20.0%
!!! AAGATAATTTTAATTGAGGT+GGG + chr3.2:51469100-51469119 None:intergenic 20.0%
!!! ATACATTGTATACTTCTTTT+AGG + chr3.2:51470195-51470214 None:intergenic 20.0%
!!! TACATTGTATACTTCTTTTA+GGG + chr3.2:51470194-51470213 None:intergenic 20.0%
!!! TTTGAAGTTATGATGAAATT+GGG + chr3.2:51470023-51470042 None:intergenic 20.0%
! AAACAATTCTCAATCTCTAA+GGG - chr3.2:51470302-51470321 MS.gene05666:CDS 25.0%
! AATAGCTCTTTAGCATTATT+AGG + chr3.2:51468744-51468763 None:intergenic 25.0%
! AATTGGTTATAGAACAATTG+TGG - chr3.2:51469219-51469238 MS.gene05666:intron 25.0%
! ACCTATAAAGATGGATATAA+AGG - chr3.2:51468849-51468868 MS.gene05666:intron 25.0%
! ACCTTTATATCCATCTTTAT+AGG + chr3.2:51468853-51468872 None:intergenic 25.0%
! ATAGCTCTTTAGCATTATTA+GGG + chr3.2:51468743-51468762 None:intergenic 25.0%
! CAAAAGTTTGCAATGAAAAT+TGG - chr3.2:51469202-51469221 MS.gene05666:intron 25.0%
! CTAGATATGTAAATGTCTTT+GGG - chr3.2:51468797-51468816 MS.gene05666:intron 25.0%
! GTATACAATGTATTAAGTGT+TGG - chr3.2:51470202-51470221 MS.gene05666:intron 25.0%
! GTTAATTGTCATTCTGAATA+TGG - chr3.2:51469864-51469883 MS.gene05666:intron 25.0%
! TAATAATGCTAAAGAGCTAT+TGG - chr3.2:51468743-51468762 MS.gene05666:intron 25.0%
! TCTAGATATGTAAATGTCTT+TGG - chr3.2:51468796-51468815 MS.gene05666:intron 25.0%
! TTGAAGTTATGATGAAATTG+GGG + chr3.2:51470022-51470041 None:intergenic 25.0%
! TTGGCAAGATTATTGAAAAA+TGG - chr3.2:51469555-51469574 MS.gene05666:intron 25.0%
!! AACTTTTGCATCTAAAAGAT+TGG + chr3.2:51469190-51469209 None:intergenic 25.0%
!! ACATTGTATACTTCTTTTAG+GGG + chr3.2:51470193-51470212 None:intergenic 25.0%
!! ACTTTTGCATCTAAAAGATT+GGG + chr3.2:51469189-51469208 None:intergenic 25.0%
!! GCTCTTTGGTTAAAATATTT+TGG - chr3.2:51468875-51468894 MS.gene05666:intron 25.0%
!! GTACATATCTTTTTCTTTTC+TGG - chr3.2:51469768-51469787 MS.gene05666:intron 25.0%
!! TACATTTTATGCTCTTTTAG+AGG - chr3.2:51468623-51468642 MS.gene05666:CDS 25.0%
!!! AATATCTTCGTATTTGTTGT+AGG - chr3.2:51469805-51469824 MS.gene05666:intron 25.0%
!!! CTTTGAAGTTATGATGAAAT+TGG + chr3.2:51470024-51470043 None:intergenic 25.0%
!!! GAAGATAATTTTAATTGAGG+TGG + chr3.2:51469101-51469120 None:intergenic 25.0%
!!! TGGAAACTTTTTTATTTCCA+TGG - chr3.2:51469599-51469618 MS.gene05666:intron 25.0%
ACAAAAAATGACATATACGG+TGG - chr3.2:51470405-51470424 MS.gene05666:CDS 30.0%
AGAAACATACTCAAAGCATA+AGG - chr3.2:51469689-51469708 MS.gene05666:intron 30.0%
ATAGAGAATGTACCAAGATA+TGG - chr3.2:51469623-51469642 MS.gene05666:intron 30.0%
ATAGATACTGCTTCATAGAA+AGG - chr3.2:51469931-51469950 MS.gene05666:intron 30.0%
ATTATTAGGGTAAGTGTCTA+AGG + chr3.2:51468730-51468749 None:intergenic 30.0%
CAAACAATTCTCAATCTCTA+AGG - chr3.2:51470301-51470320 MS.gene05666:CDS 30.0%
CTCATATCAACCTATAAAGA+TGG - chr3.2:51468840-51468859 MS.gene05666:intron 30.0%
TAACACAGTATTATCTGTGA+TGG - chr3.2:51468539-51468558 MS.gene05666:CDS 30.0%
TAGTTCATAAGATCTACCAT+TGG - chr3.2:51469163-51469182 MS.gene05666:intron 30.0%
TGATTACTTTGTTACCTTGA+TGG + chr3.2:51468769-51468788 None:intergenic 30.0%
TGTCATCAATGATTAGCAAT+GGG - chr3.2:51470244-51470263 MS.gene05666:CDS 30.0%
TTCTTTACTTGTAGCTTATG+AGG - chr3.2:51470428-51470447 MS.gene05666:CDS 30.0%
TTTCATCATAACTTCAAAGC+TGG - chr3.2:51470025-51470044 MS.gene05666:intron 30.0%
! AGCATAAGGAATTTTCTCAA+TGG - chr3.2:51469703-51469722 MS.gene05666:intron 30.0%
! CATAAGGAATTTTCTCAATG+GGG - chr3.2:51469705-51469724 MS.gene05666:intron 30.0%
! GCATAAGGAATTTTCTCAAT+GGG - chr3.2:51469704-51469723 MS.gene05666:intron 30.0%
!! CTTCTAAATTTGCTAAGCAT+TGG - chr3.2:51468646-51468665 MS.gene05666:CDS 30.0%
!!! ACACTTGTTCTTTGTTTTTC+AGG + chr3.2:51469252-51469271 None:intergenic 30.0%
ACCTTGAATCTCTTGCAAAA+TGG + chr3.2:51468675-51468694 None:intergenic 35.0%
AGTAGAAAATGCATCCAAGT+TGG - chr3.2:51469653-51469672 MS.gene05666:intron 35.0%
GTACTTGAAGAATTGTGTCA+TGG + chr3.2:51469752-51469771 None:intergenic 35.0%
GTAGAAAATGCATCCAAGTT+GGG - chr3.2:51469654-51469673 MS.gene05666:intron 35.0%
GTGTCATCAATGATTAGCAA+TGG - chr3.2:51470243-51470262 MS.gene05666:CDS 35.0%
TTCTTCATGGATGAAGAGAA+GGG - chr3.2:51470336-51470355 MS.gene05666:CDS 35.0%
TTGGTACATTCTCTATACCA+TGG + chr3.2:51469619-51469638 None:intergenic 35.0%
! TGCTTTGAGTATGTTTCTTC+TGG + chr3.2:51469687-51469706 None:intergenic 35.0%
!!! GTGATATTTTCAAAGCACTG+AGG + chr3.2:51470387-51470406 None:intergenic 35.0%
AACAAACCCATCTTCATCTC+TGG + chr3.2:51469963-51469982 None:intergenic 40.0%
AAGGTCTTGAAGTATGCATC+TGG + chr3.2:51468711-51468730 None:intergenic 40.0%
ACAATGCCAGAGATGAAGAT+GGG - chr3.2:51469954-51469973 MS.gene05666:intron 40.0%
ACATGAAATTGCCTTTGTGC+AGG - chr3.2:51470359-51470378 MS.gene05666:CDS 40.0%
AGAGATTCAAGGTTGAACCT+AGG - chr3.2:51468682-51468701 MS.gene05666:CDS 40.0%
ATAGGGTTGAGTGTAGTACA+AGG - chr3.2:51469003-51469022 MS.gene05666:CDS 40.0%
CATCTAAAAGATTGGGCCAA+TGG + chr3.2:51469182-51469201 None:intergenic 40.0%
CTACTCGACTTTCCATATCT+TGG + chr3.2:51469638-51469657 None:intergenic 40.0%
CTTCTTCATGGATGAAGAGA+AGG - chr3.2:51470335-51470354 MS.gene05666:CDS 40.0%
GGATATAAAGGTGAGCTCTT+TGG - chr3.2:51468861-51468880 MS.gene05666:intron 40.0%
GTGGGTCAGATACTAAATGT+GGG + chr3.2:51469082-51469101 None:intergenic 40.0%
GTGTATCTTTCAGATGATGC+TGG - chr3.2:51468591-51468610 MS.gene05666:CDS 40.0%
TAAAGAGCTATTGGCCATCA+AGG - chr3.2:51468752-51468771 MS.gene05666:intron 40.0%
TAGGGTTGAGTGTAGTACAA+GGG - chr3.2:51469004-51469023 MS.gene05666:CDS 40.0%
TATGCCCACCTTGGTATATT+TGG - chr3.2:51469982-51470001 MS.gene05666:intron 40.0%
TGATTCGACCATTGATGTTG+TGG + chr3.2:51469039-51469058 None:intergenic 40.0%
TGTACTACACTCAACCCTAT+TGG + chr3.2:51469003-51469022 None:intergenic 40.0%
TTCTGGTACTTTACCCAACT+TGG + chr3.2:51469670-51469689 None:intergenic 40.0%
TTGGTCCTCATTGCAGATAA+GGG - chr3.2:51470221-51470240 MS.gene05666:CDS 40.0%
!! GCCATTTTGCAAGAGATTCA+AGG - chr3.2:51468671-51468690 MS.gene05666:CDS 40.0%
ACGAGCCAAATATACCAAGG+TGG + chr3.2:51469990-51470009 None:intergenic 45.0%
AGCTGGAGCTATGAATTCAC+TGG - chr3.2:51470042-51470061 MS.gene05666:intron 45.0%
AGGGTTGAGTGTAGTACAAG+GGG - chr3.2:51469005-51469024 MS.gene05666:CDS 45.0%
CGAGCCAAATATACCAAGGT+GGG + chr3.2:51469989-51470008 None:intergenic 45.0%
CTCACGAGCCAAATATACCA+AGG + chr3.2:51469993-51470012 None:intergenic 45.0%
GACAATGCCAGAGATGAAGA+TGG - chr3.2:51469953-51469972 MS.gene05666:intron 45.0%
GGATGCACTTTGCTTCTTCA+TGG - chr3.2:51470323-51470342 MS.gene05666:CDS 45.0%
GGTGGGTCAGATACTAAATG+TGG + chr3.2:51469083-51469102 None:intergenic 45.0%
GTTGGTCCTCATTGCAGATA+AGG - chr3.2:51470220-51470239 MS.gene05666:CDS 45.0%
TGACACCCTTATCTGCAATG+AGG + chr3.2:51470229-51470248 None:intergenic 45.0%
! CTAGAGTGCCACAACATCAA+TGG - chr3.2:51469028-51469047 MS.gene05666:CDS 45.0%
AAGTATGCATCTGGCGACCT+AGG + chr3.2:51468702-51468721 None:intergenic 50.0%
TTGCGGCATAGCAGCCAATA+GGG - chr3.2:51468986-51469005 MS.gene05666:CDS 50.0%
TTTGCGGCATAGCAGCCAAT+AGG - chr3.2:51468985-51469004 MS.gene05666:CDS 50.0%
!! TGGGTTTGTTATGCCCACCT+TGG - chr3.2:51469973-51469992 MS.gene05666:intron 50.0%
GCACTGAGGAGCCTGCACAA+AGG + chr3.2:51470373-51470392 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 51468531 51470458 51468531 ID=MS.gene05666
chr3.2 mRNA 51468531 51470458 51468531 ID=MS.gene05666.t1;Parent=MS.gene05666
chr3.2 exon 51470216 51470458 51470216 ID=MS.gene05666.t1.exon1;Parent=MS.gene05666.t1
chr3.2 CDS 51470216 51470458 51470216 ID=cds.MS.gene05666.t1;Parent=MS.gene05666.t1
chr3.2 exon 51469222 51469362 51469222 ID=MS.gene05666.t1.exon2;Parent=MS.gene05666.t1
chr3.2 CDS 51469222 51469362 51469222 ID=cds.MS.gene05666.t1;Parent=MS.gene05666.t1
chr3.2 exon 51468926 51469054 51468926 ID=MS.gene05666.t1.exon3;Parent=MS.gene05666.t1
chr3.2 CDS 51468926 51469054 51468926 ID=cds.MS.gene05666.t1;Parent=MS.gene05666.t1
chr3.2 exon 51468531 51468752 51468531 ID=MS.gene05666.t1.exon4;Parent=MS.gene05666.t1
chr3.2 CDS 51468531 51468752 51468531 ID=cds.MS.gene05666.t1;Parent=MS.gene05666.t1
Gene Sequence

>MS.gene05666

ATGGTGATTAACACAGTATTATCTGTGATGGCATATGATTATCAAACAGAGAAGCTTAGTGTGTATCTTTCAGATGATGCTGGATCAGATATTACATTTTATGCTCTTTTAGAGGCTTCTAAATTTGCTAAGCATTGGTTGCCATTTTGCAAGAGATTCAAGGTTGAACCTAGGTCGCCAGATGCATACTTCAAGACCTTAGACACTTACCCTAATAATGCTAAAGAGCTATTGGCCATCAAGGTAACAAAGTAATCAACTTTACTCTAGATATGTAAATGTCTTTGGGAATATATCTTTAGAATGCTTCTCATATCAACCTATAAAGATGGATATAAAGGTGAGCTCTTTGGTTAAAATATTTTGGTTAACTTTTAGGTTAATTTGACATAACATATTATTGTATGTTGTTATTGAACAAATGAAATATAATTGCATATTATTACAAATAAAATTTGCGGCATAGCAGCCAATAGGGTTGAGTGTAGTACAAGGGGCTAGAGTGCCACAACATCAATGGTCGAATCAAATTACAGATGAAAGAAATACCCACATTTAGTATCTGACCCACCTCAATTAAAATTATCTTCAATGATGGAAACATATATAAATAAAAAATATATATAGCATATTAGTTCATAAGATCTACCATTGGCCCAATCTTTTAGATGCAAAAGTTTGCAATGAAAATTGGTTATAGAACAATTGTGGTTTTTCACCTGAAAAACAAAGAACAAGTGTACTTCATATCAATAAATACAAGCTATCAGACTTGCCACTTAATCATATGAAATTAAATTAGCAACCTAATTAAAAACAAACAATAAAATTTGTGCTAATTACTTTGTACTCAAATTTTGACTTTTATAAATGTACTCAAGATTGTTTAATAGTGAAATTGGAAATTCATTTCAAATTTACGTATGTTGACCCATTATTTCTTAGTGATTTCAAATTTACTCATGAATGATTATATTTAATTTCTTATTATGTTTGAGGATTTTATCTTCAAAAAGATAATTTTTTGGCAAGATTATTGAAAAATGGATCATCAATATGTATAAATAATGGAAACTTTTTTATTTCCATGGTATAGAGAATGTACCAAGATATGGAAAGTCGAGTAGAAAATGCATCCAAGTTGGGTAAAGTACCAGAAGAAACATACTCAAAGCATAAGGAATTTTCTCAATGGGGTTCATATTCATCAAGACGTGACCATGACACAATTCTTCAAGTACATATCTTTTTCTTTTCTGGCTGACGTAGTTTAAAATATCTTCGTATTTGTTGTAGGAAATTGCTCTTTAAACTTTCAAATACTTCAAGGGTAGTTAATTGTCATTCTGAATATGGTAATAATTTAATATGACAATTAGTTGGTTTGTATTAATTTCTTTATAGATACTGCTTCATAGAAAGGACAATGCCAGAGATGAAGATGGGTTTGTTATGCCCACCTTGGTATATTTGGCTCGTGAGAAAAGACCCCAATTTCATCATAACTTCAAAGCTGGAGCTATGAATTCACTGGTACTCTATATATATAGACACTAAGCCTATATTGATCGTGAATTTAAATTCAATTAGGACCAAGTTTAATTTTTGAATGCATGTTTTCTGAAGTTAATTAATTGTTTAGTATATGTATTAATTGTTCCCCTAAAAGAAGTATACAATGTATTAAGTGTTGGTCCTCATTGCAGATAAGGGTGTCATCAATGATTAGCAATGGGAAAATTATTCTCAATGTAGATTGTGACATGTACTCAAACAATTCTCAATCTCTAAGGGATGCACTTTGCTTCTTCATGGATGAAGAGAAGGGACATGAAATTGCCTTTGTGCAGGCTCCTCAGTGCTTTGAAAATATCACAAAAAATGACATATACGGTGGTTCTTTACTTGTAGCTTATGAGGTAAAGTAG

Protein sequence

>MS.gene05666.t1

MVINTVLSVMAYDYQTEKLSVYLSDDAGSDITFYALLEASKFAKHWLPFCKRFKVEPRSPDAYFKTLDTYPNNAKELLAIKRMYQDMESRVENASKLGKVPEETYSKHKEFSQWGSYSSRRDHDTILQILLHRKDNARDEDGFVMPTLVYLAREKRPQFHHNFKAGAMNSLIRVSSMISNGKIILNVDCDMYSNNSQSLRDALCFFMDEEKGHEIAFVQAPQCFENITKNDIYGGSLLVAYEVK