AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053480.t1 MTR_4g086470 94.375 320 18 0 1 320 1 320 0.0 598
MS.gene053480.t1 MTR_4g086480 83.489 321 52 1 1 320 1 321 0.0 573
MS.gene053480.t1 MTR_4g086510 61.920 323 117 3 1 320 1 320 4.09e-155 437
MS.gene053480.t1 MTR_7g056207 59.627 322 124 3 2 320 34 352 4.71e-146 415
MS.gene053480.t1 MTR_5g005850 43.293 328 173 7 1 317 3 328 7.57e-96 287
MS.gene053480.t1 MTR_3g101420 44.551 312 162 4 14 319 10 316 5.11e-95 284
MS.gene053480.t1 MTR_1g105020 45.283 318 162 8 10 317 7 322 1.04e-92 278
MS.gene053480.t1 MTR_4g086540 45.079 315 153 4 3 317 10 304 2.93e-91 275
MS.gene053480.t1 MTR_3g450680 43.519 324 172 6 6 319 11 333 4.67e-90 272
MS.gene053480.t1 MTR_8g040860 43.533 317 171 6 10 319 15 330 4.28e-85 259
MS.gene053480.t1 MTR_5g005920 38.298 329 192 7 2 319 4 332 4.81e-77 239
MS.gene053480.t1 MTR_7g051020 42.284 324 178 6 4 319 5 327 1.82e-76 237
MS.gene053480.t1 MTR_1g104930 43.827 324 170 8 4 319 5 324 5.03e-75 233
MS.gene053480.t1 MTR_5g005900 40.303 330 180 8 4 319 2 328 7.94e-74 231
MS.gene053480.t1 MTR_1g104933 42.857 322 170 8 3 317 2 316 8.29e-69 217
MS.gene053480.t1 MTR_1g012430 38.217 314 178 8 14 320 6 310 9.84e-54 178
MS.gene053480.t1 MTR_4g050140 35.161 310 189 7 18 319 12 317 1.90e-52 175
MS.gene053480.t1 MTR_1g111280 33.223 301 184 5 14 302 29 324 5.37e-47 162
MS.gene053480.t1 MTR_7g406880 31.307 329 194 10 18 319 28 351 2.52e-44 155
MS.gene053480.t1 MTR_1g102160 33.455 275 159 7 23 279 23 291 5.35e-40 143
MS.gene053480.t1 MTR_7g107040 30.476 315 206 7 14 320 10 319 3.25e-39 140
MS.gene053480.t1 MTR_6g464320 32.886 298 171 11 38 317 39 325 2.31e-38 139
MS.gene053480.t1 MTR_3g012440 32.353 272 169 5 61 319 73 342 3.42e-38 139
MS.gene053480.t1 MTR_6g464120 34.340 265 159 6 24 277 29 289 9.36e-38 141
MS.gene053480.t1 MTR_8g035520 33.447 293 182 6 36 319 38 326 2.51e-37 136
MS.gene053480.t1 MTR_6g464280 32.886 298 171 10 38 317 38 324 3.17e-35 130
MS.gene053480.t1 MTR_6g065120 31.833 311 187 7 24 319 37 337 8.17e-35 129
MS.gene053480.t1 MTR_6g065110 30.844 308 189 7 24 317 37 334 9.56e-35 129
MS.gene053480.t1 MTR_8g035540 33.333 297 175 9 38 320 32 319 1.05e-34 129
MS.gene053480.t1 MTR_6g065430 33.115 305 185 8 24 319 35 329 1.91e-34 128
MS.gene053480.t1 MTR_1g089310 32.143 252 151 7 73 317 118 356 4.48e-33 125
MS.gene053480.t1 MTR_1g089310 32.143 252 151 7 73 317 102 340 4.84e-33 125
MS.gene053480.t1 MTR_6g065340 31.058 293 171 6 38 320 60 331 5.86e-33 124
MS.gene053480.t1 MTR_6g065370 31.419 296 180 6 38 319 49 335 9.07e-33 124
MS.gene053480.t1 MTR_6g065400 30.976 297 182 6 38 320 49 336 1.25e-32 124
MS.gene053480.t1 MTR_6g464510 31.544 298 173 10 38 317 42 326 1.47e-32 123
MS.gene053480.t1 MTR_0007s0520 29.970 337 198 11 1 320 12 327 3.71e-32 122
MS.gene053480.t1 MTR_6g065270 30.565 301 180 8 38 319 47 337 9.69e-32 121
MS.gene053480.t1 MTR_1g102170 31.203 266 163 7 24 276 43 301 1.26e-31 121
MS.gene053480.t1 MTR_8g035500 32.411 253 158 5 38 279 33 283 4.30e-31 119
MS.gene053480.t1 MTR_7g093950 31.274 259 149 8 73 317 103 346 1.74e-30 118
MS.gene053480.t1 MTR_1g082210 29.508 305 181 11 33 317 50 340 2.44e-29 115
MS.gene053480.t1 MTR_6g022710 29.389 262 141 10 74 296 158 414 4.47e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053480.t1 AT3G48690 47.975 321 158 6 7 318 1 321 1.19e-101 301
MS.gene053480.t1 AT1G47480 47.040 321 158 5 1 319 1 311 1.78e-100 298
MS.gene053480.t1 AT2G03550 47.619 315 160 4 7 319 1 312 1.06e-99 296
MS.gene053480.t1 AT3G48700 45.399 326 164 6 7 318 1 326 1.67e-99 296
MS.gene053480.t1 AT1G19190 46.541 318 162 5 7 319 1 315 7.72e-98 291
MS.gene053480.t1 AT1G49650 48.232 311 148 7 16 317 66 372 1.78e-92 280
MS.gene053480.t1 AT1G49660 47.950 317 159 5 7 317 1 317 5.69e-92 276
MS.gene053480.t1 AT1G49640 47.078 308 150 7 17 317 12 313 7.28e-90 271
MS.gene053480.t1 AT1G68620 30.982 326 199 10 5 317 17 329 1.34e-42 150
MS.gene053480.t1 AT5G06570 33.542 319 199 7 10 317 9 325 1.92e-38 139
MS.gene053480.t1 AT5G06570 33.542 319 199 7 10 317 9 325 1.92e-38 139
MS.gene053480.t1 AT5G06570 33.542 319 199 7 10 317 24 340 2.08e-38 139
MS.gene053480.t1 AT5G06570 33.542 319 199 7 10 317 24 340 2.08e-38 139
MS.gene053480.t1 AT2G45600 32.203 295 181 8 38 320 31 318 7.34e-37 135
MS.gene053480.t1 AT5G16080 31.786 280 169 8 14 279 31 302 8.58e-37 135
MS.gene053480.t1 AT2G45610 32.534 292 179 8 38 317 38 323 2.57e-33 125
MS.gene053480.t1 AT5G27320 29.703 303 182 9 33 317 50 339 1.96e-32 123
MS.gene053480.t1 AT3G05120 29.180 305 183 10 33 317 50 341 5.44e-32 122
MS.gene053480.t1 AT3G63010 32.090 268 150 9 33 279 50 306 3.38e-30 117
MS.gene053480.t1 AT5G23530 30.345 290 179 9 37 317 51 326 4.02e-29 114
MS.gene053480.t1 AT5G62180 30.909 275 162 8 38 295 38 301 5.71e-29 114

Find 71 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGGTGGGTGATTGGTTT+TGG 0.145456 4.3:-26478374 None:intergenic
GCTAATATTTCACACTATTT+AGG 0.162895 4.3:+26478685 MS.gene053480:CDS
TTTAGATTCAACGTTGGTTT+TGG 0.202200 4.3:-26478302 None:intergenic
ACTTCACTTGCTAATGTTAT+TGG 0.227846 4.3:+26478490 MS.gene053480:CDS
CCATTGCTCATGAAGATTCA+TGG 0.261987 4.3:+26478554 MS.gene053480:CDS
TCGGTTTGGGAAGGAAAATT+TGG 0.267860 4.3:+26478711 MS.gene053480:CDS
TTGAGGTAGTTATGGTAGTT+TGG 0.286089 4.3:-26478460 None:intergenic
CACTATTTAGGTATTCGGTT+TGG 0.299444 4.3:+26478697 MS.gene053480:CDS
TTTCACACTATTTAGGTATT+CGG 0.307797 4.3:+26478692 MS.gene053480:CDS
CCCGGCTAATGATCCCGATT+TGG 0.313711 4.3:+26478894 MS.gene053480:CDS
CCGGCTAATGATCCCGATTT+GGG 0.325716 4.3:+26478895 MS.gene053480:CDS
AGTTGCATCCTTCATCAAAA+AGG 0.326008 4.3:+26479113 MS.gene053480:CDS
CTTTCTCAAAATCTGCATAT+TGG 0.331880 4.3:-26478636 None:intergenic
AGATTGCTTGTTTGTGTTGC+TGG 0.344082 4.3:+26478934 MS.gene053480:CDS
CCTGTCTTTGTTTACTTTCA+CGG 0.344106 4.3:+26478406 MS.gene053480:CDS
TGCTGAGATGTTATGTTCTT+CGG 0.344889 4.3:-26478338 None:intergenic
GGTCGTGTGGAAAATCTAAT+AGG 0.345060 4.3:+26478250 MS.gene053480:CDS
GCTTCACATGTTGGTGGAAA+TGG 0.350595 4.3:+26478595 MS.gene053480:CDS
AATTGGATCAGAATCAAATA+TGG 0.360234 4.3:+26478792 MS.gene053480:CDS
ATTCATGGCTTGCACTCAAA+TGG 0.361551 4.3:+26478569 MS.gene053480:CDS
ACTATTTAGGTATTCGGTTT+GGG 0.372944 4.3:+26478698 MS.gene053480:CDS
TCTTCATGAGCAATGGGAAC+AGG 0.384148 4.3:-26478547 None:intergenic
AATGGCTATTTCGTCGTTGA+TGG 0.384770 4.3:-26478194 None:intergenic
TTGGATGGTTTGAAACTTGA+AGG 0.392629 4.3:+26478730 MS.gene053480:CDS
TAACAGAGTTGAGGTAGTTA+TGG 0.398147 4.3:-26478468 None:intergenic
ATATTTGATTCTGATCCAAT+TGG 0.402441 4.3:-26478790 None:intergenic
TTATGGTAGTTTGGTGAGAA+AGG 0.405757 4.3:-26478451 None:intergenic
TGATCCCGATTTGGGGAAGT+TGG 0.407781 4.3:+26478903 MS.gene053480:CDS
ACAACCCAACTTCCCCAAAT+CGG 0.414443 4.3:-26478908 None:intergenic
AATCAACGGGTCGTCAGATC+CGG 0.425185 4.3:-26478869 None:intergenic
GATCCCGATTTGGGGAAGTT+GGG 0.451553 4.3:+26478904 MS.gene053480:CDS
CCCAAATCGGGATCATTAGC+CGG 0.457367 4.3:-26478895 None:intergenic
GCAATGGGAACAGGGTGTTC+CGG 0.459329 4.3:-26478538 None:intergenic
TTTGTTTACTTTCACGGCGG+TGG 0.469368 4.3:+26478412 MS.gene053480:CDS
CATTAGCCGGGTTAATCAAC+GGG 0.471264 4.3:-26478882 None:intergenic
GCCATAGCATTCTCACAACT+TGG 0.472300 4.3:-26479078 None:intergenic
CCAAATCGGGATCATTAGCC+GGG 0.473736 4.3:-26478894 None:intergenic
CAACCCAACTTCCCCAAATC+GGG 0.476448 4.3:-26478907 None:intergenic
TTCATGGCTTGCACTCAAAT+GGG 0.480049 4.3:+26478570 MS.gene053480:CDS
AAGTGGTTGGGGTGGTGTTG+TGG 0.481631 4.3:+26479008 MS.gene053480:CDS
CATGAATCTTCATGAGCAAT+GGG 0.488874 4.3:-26478553 None:intergenic
GATTGCTTGTTTGTGTTGCT+GGG 0.495692 4.3:+26478935 MS.gene053480:CDS
CCGTGAAAGTAAACAAAGAC+AGG 0.497695 4.3:-26478406 None:intergenic
GGCTATTTCGTCGTTGATGG+TGG 0.504951 4.3:-26478191 None:intergenic
TTTGAGAAAGTGTTCTTAGG+AGG 0.509667 4.3:+26478649 MS.gene053480:CDS
CCATGAATCTTCATGAGCAA+TGG 0.523102 4.3:-26478554 None:intergenic
TCGTCAGATCCGGTCGTGGT+TGG 0.537151 4.3:-26478859 None:intergenic
TTTACATGTCCAACCACGAC+CGG 0.538692 4.3:+26478850 MS.gene053480:CDS
TGGATGGTTTGAAACTTGAA+GGG 0.541623 4.3:+26478731 MS.gene053480:CDS
GTGGAAATGGCTCTGATGAA+TGG 0.542774 4.3:+26478608 MS.gene053480:CDS
TATTTCGTCGTTGATGGTGG+AGG 0.545398 4.3:-26478188 None:intergenic
AGTTGTTGAAACAGAGGATG+AGG 0.546642 4.3:+26479032 MS.gene053480:CDS
TTCTTAGGAGGTGATAGTGC+TGG 0.559579 4.3:+26478661 MS.gene053480:CDS
TTTAGGTATTCGGTTTGGGA+AGG 0.559737 4.3:+26478702 MS.gene053480:CDS
TCATTAGCCGGGTTAATCAA+CGG 0.564768 4.3:-26478883 None:intergenic
TTTGGGAAGGAAAATTTGGA+TGG 0.568228 4.3:+26478715 MS.gene053480:CDS
CGGGTCGTCAGATCCGGTCG+TGG 0.575435 4.3:-26478863 None:intergenic
AAATGGGTTGCTTCACATGT+TGG 0.579541 4.3:+26478586 MS.gene053480:CDS
TTTGTATACTCTCAAGATTG+GGG 0.592780 4.3:-26478224 None:intergenic
CTTCATGAGCAATGGGAACA+GGG 0.596332 4.3:-26478546 None:intergenic
ACCAAGTTGTGAGAATGCTA+TGG 0.606599 4.3:+26479077 MS.gene053480:CDS
TGGGTTGCTTCACATGTTGG+TGG 0.616285 4.3:+26478589 MS.gene053480:CDS
TTGTATACTCTCAAGATTGG+GGG 0.619560 4.3:-26478223 None:intergenic
TGTTCACTACAGAAGAGCAC+CGG 0.621670 4.3:+26478519 MS.gene053480:CDS
TGACGACCCGTTGATTAACC+CGG 0.631546 4.3:+26478876 MS.gene053480:CDS
GTCTTTGTTTACTTTCACGG+CGG 0.634625 4.3:+26478409 MS.gene053480:CDS
CGTGAAAGTAAACAAAGACA+GGG 0.635829 4.3:-26478405 None:intergenic
AACGTCTTTAGATTCAACGT+TGG 0.641244 4.3:-26478308 None:intergenic
CGGCTAATGATCCCGATTTG+GGG 0.655506 4.3:+26478896 MS.gene053480:CDS
TGTGGAAGTTGTTGAAACAG+AGG 0.656063 4.3:+26479026 MS.gene053480:CDS
CAAGTGAAGTAACAGAGTTG+AGG 0.663575 4.3:-26478477 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAGATTCATAATTTG+TGG + chr4.3:26478824-26478843 MS.gene053480:CDS 15.0%
!!! TTATATCCATCCTTATTTTT+GGG + chr4.3:26478759-26478778 MS.gene053480:CDS 20.0%
!!! TTTATATCCATCCTTATTTT+TGG + chr4.3:26478758-26478777 MS.gene053480:CDS 20.0%
! AAAGAATTGCTTGAAAAAAG+TGG + chr4.3:26478991-26479010 MS.gene053480:CDS 25.0%
! AATTGGATCAGAATCAAATA+TGG + chr4.3:26478792-26478811 MS.gene053480:CDS 25.0%
! ATATTTGATTCTGATCCAAT+TGG - chr4.3:26478793-26478812 None:intergenic 25.0%
! GCTAATATTTCACACTATTT+AGG + chr4.3:26478685-26478704 MS.gene053480:CDS 25.0%
! TTTCACACTATTTAGGTATT+CGG + chr4.3:26478692-26478711 MS.gene053480:CDS 25.0%
!! ATCTTGAGAGTATACAAAAA+CGG + chr4.3:26478229-26478248 MS.gene053480:CDS 25.0%
!! TTTTGTATACTCTCAAGATT+GGG - chr4.3:26478228-26478247 None:intergenic 25.0%
!! TTTTTGTATACTCTCAAGAT+TGG - chr4.3:26478229-26478248 None:intergenic 25.0%
!!! TATATCCATCCTTATTTTTG+GGG + chr4.3:26478760-26478779 MS.gene053480:CDS 25.0%
AATTGCTTGAAAAAAGTGGT+TGG + chr4.3:26478995-26479014 MS.gene053480:CDS 30.0%
ACTATTTAGGTATTCGGTTT+GGG + chr4.3:26478698-26478717 MS.gene053480:CDS 30.0%
ATTGCTTGAAAAAAGTGGTT+GGG + chr4.3:26478996-26479015 MS.gene053480:CDS 30.0%
CTTTCTCAAAATCTGCATAT+TGG - chr4.3:26478639-26478658 None:intergenic 30.0%
TTTGTATACTCTCAAGATTG+GGG - chr4.3:26478227-26478246 None:intergenic 30.0%
! ACTTCACTTGCTAATGTTAT+TGG + chr4.3:26478490-26478509 MS.gene053480:CDS 30.0%
!! AAAGATATTTTGAGGGATAG+GGG + chr4.3:26478958-26478977 MS.gene053480:CDS 30.0%
!! GAAAGATATTTTGAGGGATA+GGG + chr4.3:26478957-26478976 MS.gene053480:CDS 30.0%
!!! GATTTTGAGAAAGTGTTCTT+AGG + chr4.3:26478646-26478665 MS.gene053480:CDS 30.0%
!!! TTAGATTCAACGTTGGTTTT+GGG - chr4.3:26478304-26478323 None:intergenic 30.0%
!!! TTTAGATTCAACGTTGGTTT+TGG - chr4.3:26478305-26478324 None:intergenic 30.0%
AACGTCTTTAGATTCAACGT+TGG - chr4.3:26478311-26478330 None:intergenic 35.0%
AGTTGCATCCTTCATCAAAA+AGG + chr4.3:26479113-26479132 MS.gene053480:CDS 35.0%
CACTATTTAGGTATTCGGTT+TGG + chr4.3:26478697-26478716 MS.gene053480:CDS 35.0%
CATGAATCTTCATGAGCAAT+GGG - chr4.3:26478556-26478575 None:intergenic 35.0%
CGTGAAAGTAAACAAAGACA+GGG - chr4.3:26478408-26478427 None:intergenic 35.0%
TAACAGAGTTGAGGTAGTTA+TGG - chr4.3:26478471-26478490 None:intergenic 35.0%
TGCTGAGATGTTATGTTCTT+CGG - chr4.3:26478341-26478360 None:intergenic 35.0%
TTGAGGTAGTTATGGTAGTT+TGG - chr4.3:26478463-26478482 None:intergenic 35.0%
TTGCTTGAAAAAAGTGGTTG+GGG + chr4.3:26478997-26479016 MS.gene053480:CDS 35.0%
TTGTATACTCTCAAGATTGG+GGG - chr4.3:26478226-26478245 None:intergenic 35.0%
TTTGGGAAGGAAAATTTGGA+TGG + chr4.3:26478715-26478734 MS.gene053480:CDS 35.0%
! AAACAAAGACAGGGAGTTTT+TGG - chr4.3:26478399-26478418 None:intergenic 35.0%
! AACAAAGACAGGGAGTTTTT+GGG - chr4.3:26478398-26478417 None:intergenic 35.0%
! CCTGTCTTTGTTTACTTTCA+CGG + chr4.3:26478406-26478425 MS.gene053480:CDS 35.0%
! TGGATGGTTTGAAACTTGAA+GGG + chr4.3:26478731-26478750 MS.gene053480:CDS 35.0%
! TTATGGTAGTTTGGTGAGAA+AGG - chr4.3:26478454-26478473 None:intergenic 35.0%
! TTGCTGGGAAAGATATTTTG+AGG + chr4.3:26478950-26478969 MS.gene053480:CDS 35.0%
! TTGGATGGTTTGAAACTTGA+AGG + chr4.3:26478730-26478749 MS.gene053480:CDS 35.0%
! TTTTGATGAAGGATGCAACT+TGG - chr4.3:26479113-26479132 None:intergenic 35.0%
!! GGAAAGATATTTTGAGGGAT+AGG + chr4.3:26478956-26478975 MS.gene053480:CDS 35.0%
!! TGCTGGGAAAGATATTTTGA+GGG + chr4.3:26478951-26478970 MS.gene053480:CDS 35.0%
!! TTTGAGAAAGTGTTCTTAGG+AGG + chr4.3:26478649-26478668 MS.gene053480:CDS 35.0%
ACCAAGTTGTGAGAATGCTA+TGG + chr4.3:26479077-26479096 MS.gene053480:CDS 40.0%
AGATTGCTTGTTTGTGTTGC+TGG + chr4.3:26478934-26478953 MS.gene053480:CDS 40.0%
AGTATACAAAAACGGTCGTG+TGG + chr4.3:26478237-26478256 MS.gene053480:CDS 40.0%
AGTTGTTGAAACAGAGGATG+AGG + chr4.3:26479032-26479051 MS.gene053480:CDS 40.0%
CAAGTGAAGTAACAGAGTTG+AGG - chr4.3:26478480-26478499 None:intergenic 40.0%
CCATGAATCTTCATGAGCAA+TGG - chr4.3:26478557-26478576 None:intergenic 40.0%
CCATTGCTCATGAAGATTCA+TGG + chr4.3:26478554-26478573 MS.gene053480:CDS 40.0%
CCGTGAAAGTAAACAAAGAC+AGG - chr4.3:26478409-26478428 None:intergenic 40.0%
GGTCGTGTGGAAAATCTAAT+AGG + chr4.3:26478250-26478269 MS.gene053480:CDS 40.0%
TCATTAGCCGGGTTAATCAA+CGG - chr4.3:26478886-26478905 None:intergenic 40.0%
TGTGGAAGTTGTTGAAACAG+AGG + chr4.3:26479026-26479045 MS.gene053480:CDS 40.0%
! AATGGCTATTTCGTCGTTGA+TGG - chr4.3:26478197-26478216 None:intergenic 40.0%
! ATTCATGGCTTGCACTCAAA+TGG + chr4.3:26478569-26478588 MS.gene053480:CDS 40.0%
! CAAGATTGGGGGTATATCAA+TGG - chr4.3:26478215-26478234 None:intergenic 40.0%
! GATTGCTTGTTTGTGTTGCT+GGG + chr4.3:26478935-26478954 MS.gene053480:CDS 40.0%
! GTCTTTGTTTACTTTCACGG+CGG + chr4.3:26478409-26478428 MS.gene053480:CDS 40.0%
! TTCATGGCTTGCACTCAAAT+GGG + chr4.3:26478570-26478589 MS.gene053480:CDS 40.0%
!! AAATGGGTTGCTTCACATGT+TGG + chr4.3:26478586-26478605 MS.gene053480:CDS 40.0%
!! TCGGTTTGGGAAGGAAAATT+TGG + chr4.3:26478711-26478730 MS.gene053480:CDS 40.0%
!! TTTAGGTATTCGGTTTGGGA+AGG + chr4.3:26478702-26478721 MS.gene053480:CDS 40.0%
!!! TTGGTTTTGGGATCAAGAGA+TGG - chr4.3:26478292-26478311 None:intergenic 40.0%
ACAACCCAACTTCCCCAAAT+CGG - chr4.3:26478911-26478930 None:intergenic 45.0%
CATTAGCCGGGTTAATCAAC+GGG - chr4.3:26478885-26478904 None:intergenic 45.0%
CCACACCCCAAAAATAAGGA+TGG - chr4.3:26478768-26478787 None:intergenic 45.0%
CTTCATGAGCAATGGGAACA+GGG - chr4.3:26478549-26478568 None:intergenic 45.0%
CTTGAAAAAAGTGGTTGGGG+TGG + chr4.3:26479000-26479019 MS.gene053480:CDS 45.0%
GCCATAGCATTCTCACAACT+TGG - chr4.3:26479081-26479100 None:intergenic 45.0%
GGATCCACACCCCAAAAATA+AGG - chr4.3:26478772-26478791 None:intergenic 45.0%
TCTTCATGAGCAATGGGAAC+AGG - chr4.3:26478550-26478569 None:intergenic 45.0%
TTTACATGTCCAACCACGAC+CGG + chr4.3:26478850-26478869 MS.gene053480:CDS 45.0%
TTTGTTTACTTTCACGGCGG+TGG + chr4.3:26478412-26478431 MS.gene053480:CDS 45.0%
! GCTTCACATGTTGGTGGAAA+TGG + chr4.3:26478595-26478614 MS.gene053480:CDS 45.0%
! TGTTCACTACAGAAGAGCAC+CGG + chr4.3:26478519-26478538 MS.gene053480:CDS 45.0%
! TTCTTAGGAGGTGATAGTGC+TGG + chr4.3:26478661-26478680 MS.gene053480:CDS 45.0%
!! GTGGAAATGGCTCTGATGAA+TGG + chr4.3:26478608-26478627 MS.gene053480:CDS 45.0%
!! TATTTCGTCGTTGATGGTGG+AGG - chr4.3:26478191-26478210 None:intergenic 45.0%
!!! AAGACAGGGAGTTTTTGGGT+TGG - chr4.3:26478394-26478413 None:intergenic 45.0%
!!! CCATCCTTATTTTTGGGGTG+TGG + chr4.3:26478765-26478784 MS.gene053480:CDS 45.0%
!!! GTTGGTGGGTGATTGGTTTT+GGG - chr4.3:26478376-26478395 None:intergenic 45.0%
!!! GTTTTGGGATCAAGAGATGG+AGG - chr4.3:26478289-26478308 None:intergenic 45.0%
!!! TTTTGGGGTGTGGATCCAAT+TGG + chr4.3:26478775-26478794 MS.gene053480:CDS 45.0%
!!! TTTTTGGGTTGGTGGGTGAT+TGG - chr4.3:26478383-26478402 None:intergenic 45.0%
AATCAACGGGTCGTCAGATC+CGG - chr4.3:26478872-26478891 None:intergenic 50.0%
CAACCCAACTTCCCCAAATC+GGG - chr4.3:26478910-26478929 None:intergenic 50.0%
CCAAATCGGGATCATTAGCC+GGG - chr4.3:26478897-26478916 None:intergenic 50.0%
CCCAAATCGGGATCATTAGC+CGG - chr4.3:26478898-26478917 None:intergenic 50.0%
CCGGCTAATGATCCCGATTT+GGG + chr4.3:26478895-26478914 MS.gene053480:CDS 50.0%
TGGGTTGCTTCACATGTTGG+TGG + chr4.3:26478589-26478608 MS.gene053480:CDS 50.0%
! CGGCTAATGATCCCGATTTG+GGG + chr4.3:26478896-26478915 MS.gene053480:CDS 50.0%
! GGCTATTTCGTCGTTGATGG+TGG - chr4.3:26478194-26478213 None:intergenic 50.0%
! TGACGACCCGTTGATTAACC+CGG + chr4.3:26478876-26478895 MS.gene053480:CDS 50.0%
!! GATCCCGATTTGGGGAAGTT+GGG + chr4.3:26478904-26478923 MS.gene053480:CDS 50.0%
!! TGATCCCGATTTGGGGAAGT+TGG + chr4.3:26478903-26478922 MS.gene053480:CDS 50.0%
!!! ACAGGGAGTTTTTGGGTTGG+TGG - chr4.3:26478391-26478410 None:intergenic 50.0%
!!! CAGGGAGTTTTTGGGTTGGT+GGG - chr4.3:26478390-26478409 None:intergenic 50.0%
!!! GGTTGGTGGGTGATTGGTTT+TGG - chr4.3:26478377-26478396 None:intergenic 50.0%
CCCGGCTAATGATCCCGATT+TGG + chr4.3:26478894-26478913 MS.gene053480:CDS 55.0%
! AAGTGGTTGGGGTGGTGTTG+TGG + chr4.3:26479008-26479027 MS.gene053480:CDS 55.0%
! GCAATGGGAACAGGGTGTTC+CGG - chr4.3:26478541-26478560 None:intergenic 55.0%
TCGTCAGATCCGGTCGTGGT+TGG - chr4.3:26478862-26478881 None:intergenic 60.0%
CGGGTCGTCAGATCCGGTCG+TGG - chr4.3:26478866-26478885 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 26478178 26479140 26478178 ID=MS.gene053480
chr4.3 mRNA 26478178 26479140 26478178 ID=MS.gene053480.t1;Parent=MS.gene053480
chr4.3 exon 26478178 26479140 26478178 ID=MS.gene053480.t1.exon1;Parent=MS.gene053480.t1
chr4.3 CDS 26478178 26479140 26478178 ID=cds.MS.gene053480.t1;Parent=MS.gene053480.t1
Gene Sequence

>MS.gene053480

ATGGATTCAACCTCCACCATCAACGACGAAATAGCCATTGATATACCCCCAATCTTGAGAGTATACAAAAACGGTCGTGTGGAAAATCTAATAGGTGATGAGATTCTTCCTCCATCTCTTGATCCCAAAACCAACGTTGAATCTAAAGACGTTATAATCTCCGAAGAACATAACATCTCAGCAAGACTTTTCATTCCCAAAACCAATCACCCACCAACCCAAAAACTCCCTGTCTTTGTTTACTTTCACGGCGGTGGTTTTTGCATTGAAACACCTTTCTCACCAAACTACCATAACTACCTCAACTCTGTTACTTCACTTGCTAATGTTATTGGTGTTTCTGTTCACTACAGAAGAGCACCGGAACACCCTGTTCCCATTGCTCATGAAGATTCATGGCTTGCACTCAAATGGGTTGCTTCACATGTTGGTGGAAATGGCTCTGATGAATGGTTGAACCAATATGCAGATTTTGAGAAAGTGTTCTTAGGAGGTGATAGTGCTGGTGCTAATATTTCACACTATTTAGGTATTCGGTTTGGGAAGGAAAATTTGGATGGTTTGAAACTTGAAGGGAGTGTTTATATCCATCCTTATTTTTGGGGTGTGGATCCAATTGGATCAGAATCAAATATGGCTGAATTTGTAAAAAAGATTCATAATTTGTGGCGTTTTACATGTCCAACCACGACCGGATCTGACGACCCGTTGATTAACCCGGCTAATGATCCCGATTTGGGGAAGTTGGGTTGTAAGAGATTGCTTGTTTGTGTTGCTGGGAAAGATATTTTGAGGGATAGGGGTTTGTATTACAAAGAATTGCTTGAAAAAAGTGGTTGGGGTGGTGTTGTGGAAGTTGTTGAAACAGAGGATGAGGAACATATTTTTCGTCTGTTCAAACCAAGTTGTGAGAATGCTATGGCTTTGCTCAACCAAGTTGCATCCTTCATCAAAAAGGCTTGA

Protein sequence

>MS.gene053480.t1

MDSTSTINDEIAIDIPPILRVYKNGRVENLIGDEILPPSLDPKTNVESKDVIISEEHNISARLFIPKTNHPPTQKLPVFVYFHGGGFCIETPFSPNYHNYLNSVTSLANVIGVSVHYRRAPEHPVPIAHEDSWLALKWVASHVGGNGSDEWLNQYADFEKVFLGGDSAGANISHYLGIRFGKENLDGLKLEGSVYIHPYFWGVDPIGSESNMAEFVKKIHNLWRFTCPTTTGSDDPLINPANDPDLGKLGCKRLLVCVAGKDILRDRGLYYKELLEKSGWGGVVEVVETEDEEHIFRLFKPSCENAMALLNQVASFIKKA