Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22297.t1 | XP_003610975.2 | 97.6 | 539 | 13 | 0 | 1 | 539 | 44 | 582 | 1.20E-298 | 1035 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22297.t1 | Q9SGW8 | 58.9 | 540 | 184 | 4 | 1 | 539 | 48 | 550 | 2.4e-178 | 626.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22297.t1 | G7K9A8 | 97.6 | 539 | 13 | 0 | 1 | 539 | 44 | 582 | 8.7e-299 | 1035.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049418 | MS.gene22297 | 0.810218 | 1.29E-50 | -1.69E-46 |
MS.gene050310 | MS.gene22297 | 0.823806 | 1.14E-53 | -1.69E-46 |
MS.gene051478 | MS.gene22297 | 0.807848 | 4.14E-50 | -1.69E-46 |
MS.gene053144 | MS.gene22297 | 0.809507 | 1.83E-50 | -1.69E-46 |
MS.gene054584 | MS.gene22297 | 0.820094 | 8.23E-53 | -1.69E-46 |
MS.gene056228 | MS.gene22297 | 0.80245 | 5.58E-49 | -1.69E-46 |
MS.gene058197 | MS.gene22297 | 0.802524 | 5.39E-49 | -1.69E-46 |
MS.gene058198 | MS.gene22297 | 0.80027 | 1.56E-48 | -1.69E-46 |
MS.gene059300 | MS.gene22297 | 0.810235 | 1.27E-50 | -1.69E-46 |
MS.gene060519 | MS.gene22297 | 0.801122 | 1.04E-48 | -1.69E-46 |
MS.gene06057 | MS.gene22297 | 0.821135 | 4.74E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22297.t1 | MTR_5g009120 | 97.588 | 539 | 13 | 0 | 1 | 539 | 44 | 582 | 0.0 | 1091 |
MS.gene22297.t1 | MTR_8g099565 | 69.052 | 559 | 148 | 5 | 1 | 539 | 40 | 593 | 0.0 | 789 |
MS.gene22297.t1 | MTR_8g027610 | 57.374 | 556 | 204 | 9 | 1 | 538 | 51 | 591 | 0.0 | 646 |
MS.gene22297.t1 | MTR_3g091400 | 57.037 | 540 | 221 | 6 | 1 | 534 | 40 | 574 | 0.0 | 618 |
MS.gene22297.t1 | MTR_7g117395 | 56.498 | 554 | 211 | 11 | 1 | 537 | 50 | 590 | 0.0 | 607 |
MS.gene22297.t1 | MTR_8g066090 | 32.237 | 456 | 250 | 11 | 66 | 513 | 43 | 447 | 2.67e-64 | 221 |
MS.gene22297.t1 | MTR_0009s0120 | 40.317 | 315 | 163 | 7 | 211 | 513 | 152 | 453 | 1.18e-62 | 217 |
MS.gene22297.t1 | MTR_7g017360 | 38.110 | 328 | 175 | 7 | 218 | 534 | 155 | 465 | 1.14e-59 | 208 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22297.t1 | AT2G46500 | 57.303 | 534 | 207 | 5 | 1 | 534 | 48 | 560 | 0.0 | 630 |
MS.gene22297.t1 | AT2G46500 | 57.303 | 534 | 207 | 5 | 1 | 534 | 48 | 560 | 0.0 | 630 |
MS.gene22297.t1 | AT5G24240 | 53.875 | 542 | 229 | 6 | 2 | 538 | 47 | 572 | 0.0 | 590 |
MS.gene22297.t1 | AT5G24240 | 53.875 | 542 | 229 | 6 | 2 | 538 | 47 | 572 | 0.0 | 590 |
MS.gene22297.t1 | AT2G46500 | 52.022 | 371 | 157 | 5 | 1 | 371 | 48 | 397 | 1.19e-124 | 372 |
MS.gene22297.t1 | AT2G03890 | 38.788 | 330 | 178 | 6 | 195 | 513 | 139 | 455 | 2.70e-64 | 221 |
MS.gene22297.t1 | AT1G13640 | 41.522 | 289 | 144 | 5 | 218 | 494 | 154 | 429 | 2.46e-63 | 218 |
MS.gene22297.t1 | AT1G13640 | 41.522 | 289 | 144 | 5 | 218 | 494 | 154 | 429 | 2.46e-63 | 218 |
MS.gene22297.t1 | AT1G26270 | 38.235 | 340 | 171 | 6 | 205 | 536 | 145 | 453 | 3.35e-63 | 218 |
MS.gene22297.t1 | AT2G40850 | 37.059 | 340 | 182 | 8 | 200 | 522 | 94 | 418 | 1.15e-62 | 215 |
MS.gene22297.t1 | AT3G56600 | 38.125 | 320 | 167 | 6 | 206 | 512 | 85 | 386 | 7.77e-62 | 212 |
MS.gene22297.t1 | AT3G56600 | 38.125 | 320 | 167 | 6 | 206 | 512 | 88 | 389 | 9.18e-62 | 212 |
MS.gene22297.t1 | AT3G56600 | 38.125 | 320 | 167 | 6 | 206 | 512 | 88 | 389 | 9.18e-62 | 212 |
MS.gene22297.t1 | AT2G03890 | 40.161 | 249 | 127 | 4 | 275 | 513 | 99 | 335 | 5.32e-49 | 177 |
MS.gene22297.t1 | AT1G27570 | 30.224 | 268 | 150 | 9 | 285 | 537 | 387 | 632 | 6.04e-25 | 109 |
MS.gene22297.t1 | AT1G27570 | 30.224 | 268 | 150 | 9 | 285 | 537 | 396 | 641 | 6.82e-25 | 109 |
MS.gene22297.t1 | AT3G43950 | 33.803 | 142 | 77 | 5 | 288 | 425 | 78 | 206 | 1.44e-11 | 64.7 |
Find 129 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCCTGGTAGCAATGATTTC+TGG | 0.116857 | 5.4:-3855147 | None:intergenic |
GCACATTTGATTGGCTTTAC+TGG | 0.236333 | 5.4:+3854873 | MS.gene22297:CDS |
ATAGAGCTTCTGAAATATTA+TGG | 0.291106 | 5.4:+3854965 | MS.gene22297:CDS |
TAATAATCCGCGTGGATTGC+CGG | 0.312705 | 5.4:+3853557 | MS.gene22297:CDS |
AGAAGTTGCGGCTTATATAT+TGG | 0.319276 | 5.4:+3853638 | MS.gene22297:CDS |
TACTGGTAATGTTGTTCATT+TGG | 0.334044 | 5.4:+3852924 | MS.gene22297:CDS |
GCCTGGTAGCAATGATTTCT+GGG | 0.343431 | 5.4:-3855146 | None:intergenic |
ATCCTAGGGTTCACGAAAAT+CGG | 0.363297 | 5.4:-3853360 | None:intergenic |
TCCGCGTGGATTGCCGGTTT+CGG | 0.363471 | 5.4:+3853563 | MS.gene22297:CDS |
GTGGGGATTGTGGCTCTTTG+AGG | 0.363682 | 5.4:+3853772 | MS.gene22297:CDS |
TGGTGTTCCGCCTACGGTTA+TGG | 0.367323 | 5.4:+3853713 | MS.gene22297:CDS |
TTGAAGATTGCACATTTGAT+TGG | 0.370246 | 5.4:+3854864 | MS.gene22297:CDS |
AAGCAAAATCTAGTTTCTAA+TGG | 0.377281 | 5.4:+3852853 | MS.gene22297:CDS |
ACCAAACGCGGTCCAGCCTT+TGG | 0.378332 | 5.4:-3853666 | None:intergenic |
CCCTCACCATTCACCGAAAC+CGG | 0.379422 | 5.4:-3853576 | None:intergenic |
GCCATTGGTTCCTCATCAAT+TGG | 0.383037 | 5.4:-3853531 | None:intergenic |
CGAATTTGTATCGCAGATCA+TGG | 0.384306 | 5.4:+3855189 | MS.gene22297:CDS |
TCCAAAGGCTGGACCGCGTT+TGG | 0.385239 | 5.4:+3853665 | MS.gene22297:CDS |
GGATTGCCGGTTTCGGTGAA+TGG | 0.392525 | 5.4:+3853570 | MS.gene22297:CDS |
CCACAATGTTGTTGAAGAAA+GGG | 0.392633 | 5.4:+3855029 | MS.gene22297:CDS |
ATGATAGATGCAACTTTCAA+TGG | 0.393750 | 5.4:+3853408 | MS.gene22297:CDS |
GATGGTAATTGTGAGGATAT+TGG | 0.395024 | 5.4:+3853837 | MS.gene22297:CDS |
TCCACAATGTTGTTGAAGAA+AGG | 0.400392 | 5.4:+3855028 | MS.gene22297:CDS |
TTGAAGAGAGGGACAAAGGT+TGG | 0.402804 | 5.4:+3853600 | MS.gene22297:CDS |
CAGAAGTTTATGAGTAATGA+TGG | 0.410311 | 5.4:+3853819 | MS.gene22297:CDS |
TCAACTGTATCGGGAGAGTA+TGG | 0.410892 | 5.4:-3854911 | None:intergenic |
GAGCCACAATCCCCACCATC+AGG | 0.414679 | 5.4:-3853765 | None:intergenic |
GTTCCCTCAGAAGATCTAAC+AGG | 0.417109 | 5.4:-3853450 | None:intergenic |
TAGGAATTGTATTAAAAGAA+AGG | 0.420136 | 5.4:+3853044 | MS.gene22297:CDS |
GCTGGACCGCGTTTGGTGTC+TGG | 0.423380 | 5.4:+3853672 | MS.gene22297:CDS |
AGGAATTGTATTAAAAGAAA+GGG | 0.424400 | 5.4:+3853045 | MS.gene22297:CDS |
GAATCAGGATGAGGTTGTTA+AGG | 0.426840 | 5.4:+3853299 | MS.gene22297:CDS |
ATAGGAACGTTGCACATCTT+AGG | 0.430624 | 5.4:+3853025 | MS.gene22297:CDS |
AAATGGTGACTTACTTTCTC+AGG | 0.430834 | 5.4:-3854011 | None:intergenic |
AGTGTTCTAGCACTCTCAAC+TGG | 0.433384 | 5.4:-3854998 | None:intergenic |
CTCTTTGAGGATGGATCATA+AGG | 0.440712 | 5.4:+3853785 | MS.gene22297:CDS |
AAGACAATAACCATGATCAA+TGG | 0.441498 | 5.4:-3853988 | None:intergenic |
ATACTCTCTGGATGCTGAAA+AGG | 0.444836 | 5.4:+3854940 | MS.gene22297:CDS |
GAATTTGAATAATCAGAATC+AGG | 0.447450 | 5.4:+3853284 | MS.gene22297:CDS |
CTGCTCATTCCCATTGATCA+TGG | 0.456539 | 5.4:+3853978 | MS.gene22297:CDS |
AGCTTCTGAAATATTATGGT+TGG | 0.458037 | 5.4:+3854969 | MS.gene22297:CDS |
CAGATCATGGATTCCCGCCT+TGG | 0.466401 | 5.4:+3855202 | MS.gene22297:CDS |
CCGGTTTCGGTGAATGGTGA+GGG | 0.469852 | 5.4:+3853576 | MS.gene22297:CDS |
GGATTGTGGCTCTTTGAGGA+TGG | 0.473673 | 5.4:+3853776 | MS.gene22297:CDS |
TACCCTGATGGTGGGGATTG+TGG | 0.474991 | 5.4:+3853762 | MS.gene22297:CDS |
GCTTCTGAAATATTATGGTT+GGG | 0.475469 | 5.4:+3854970 | MS.gene22297:CDS |
CGCGGATTATTAACCGCCAT+TGG | 0.475646 | 5.4:-3853546 | None:intergenic |
AGACAATAACCATGATCAAT+GGG | 0.483074 | 5.4:-3853987 | None:intergenic |
TATATGTAATCAACTGTATC+GGG | 0.487936 | 5.4:-3854920 | None:intergenic |
GTTAGATCTTCTGAGGGAAC+AGG | 0.492026 | 5.4:+3853453 | MS.gene22297:CDS |
AATTTGAGTTTCAGATTGAT+CGG | 0.502943 | 5.4:+3853001 | MS.gene22297:CDS |
TTGAAGAAAGGGGTTGAGAG+AGG | 0.503562 | 5.4:+3855040 | MS.gene22297:CDS |
CGTTTAATTACCCTGATGGT+GGG | 0.504414 | 5.4:+3853754 | MS.gene22297:CDS |
GCGAAAAGCTTGATGATAAG+AGG | 0.505944 | 5.4:+3853118 | MS.gene22297:CDS |
GTATATGTAATCAACTGTAT+CGG | 0.506999 | 5.4:-3854921 | None:intergenic |
AAATCAGATTCCTCCGTGCC+TGG | 0.508144 | 5.4:-3855163 | None:intergenic |
GGGATTGAAGAGAGGGACAA+AGG | 0.509599 | 5.4:+3853596 | MS.gene22297:CDS |
TTGTTTAGAAAAGAGTCAAA+TGG | 0.514272 | 5.4:+3853948 | MS.gene22297:CDS |
ATGGTGAGGGATTGAAGAGA+GGG | 0.516819 | 5.4:+3853589 | MS.gene22297:CDS |
TTTCGACAGCTCACCAAGGC+GGG | 0.517562 | 5.4:-3855215 | None:intergenic |
TAAGAATGGCGAATGCAGAT+AGG | 0.518671 | 5.4:+3853910 | MS.gene22297:CDS |
CAATTGCATCAGTGAAAATG+AGG | 0.519789 | 5.4:+3852800 | MS.gene22297:CDS |
AAAGAGTACGGTGTAACTAC+TGG | 0.519841 | 5.4:+3852907 | MS.gene22297:CDS |
CGTTGGAAGCATCATGTGTA+GGG | 0.519995 | 5.4:+3855078 | MS.gene22297:CDS |
AGTTGATTACATATACTCTC+TGG | 0.522946 | 5.4:+3854928 | MS.gene22297:CDS |
GCGAATGCAGATAGGCATGC+AGG | 0.523425 | 5.4:+3853918 | MS.gene22297:CDS |
GCCGGTTTCGGTGAATGGTG+AGG | 0.524007 | 5.4:+3853575 | MS.gene22297:CDS |
CATGATGCTTCCAACGGCAT+AGG | 0.525963 | 5.4:-3855071 | None:intergenic |
CACAATGTTGTTGAAGAAAG+GGG | 0.526814 | 5.4:+3855030 | MS.gene22297:CDS |
ATATTGGATCATCCAAAGGC+TGG | 0.527791 | 5.4:+3853654 | MS.gene22297:CDS |
CCCTTTCTTCAACAACATTG+TGG | 0.535835 | 5.4:-3855029 | None:intergenic |
ATCTTATGCACCTCTTGCAC+AGG | 0.541451 | 5.4:-3853873 | None:intergenic |
AAGGTTATAGAACAACCCTC+TGG | 0.544988 | 5.4:+3853318 | MS.gene22297:CDS |
TCAGATTCCAACACACGCAT+TGG | 0.545912 | 5.4:-3852775 | None:intergenic |
TGTATTAAAAGAAAGGGGAA+AGG | 0.545961 | 5.4:+3853051 | MS.gene22297:CDS |
TTGGTGTCTGGTGAAGCGAT+TGG | 0.546477 | 5.4:+3853684 | MS.gene22297:CDS |
AGTTTCAGATTGATCGGCAT+AGG | 0.546957 | 5.4:+3853007 | MS.gene22297:CDS |
GGAATTGTATTAAAAGAAAG+GGG | 0.547344 | 5.4:+3853046 | MS.gene22297:CDS |
AGGAGCTGTGAGAGAAGTTG+CGG | 0.549114 | 5.4:+3853626 | MS.gene22297:CDS |
CAGTGTGCTTGATATAAGAA+TGG | 0.555819 | 5.4:+3853896 | MS.gene22297:CDS |
ATGATGCTTCCAACGGCATA+GGG | 0.557381 | 5.4:-3855070 | None:intergenic |
GAAATCATTGCTACCAGGCA+CGG | 0.558584 | 5.4:+3855150 | MS.gene22297:CDS |
TAAACCTGTTAGATCTTCTG+AGG | 0.559006 | 5.4:+3853446 | MS.gene22297:CDS |
TTGAGGATGGATCATAAGGT+GGG | 0.562337 | 5.4:+3853789 | MS.gene22297:CDS |
GGTCTCACTCCCTATGCCGT+TGG | 0.563252 | 5.4:+3855061 | MS.gene22297:CDS |
AGAGGGACAAAGGTTGGAGA+AGG | 0.563732 | 5.4:+3853606 | MS.gene22297:CDS |
GAATAATCAGAATCAGGATG+AGG | 0.566712 | 5.4:+3853290 | MS.gene22297:CDS |
AATGGTGAGGGATTGAAGAG+AGG | 0.566744 | 5.4:+3853588 | MS.gene22297:CDS |
CCGTTGGAAGCATCATGTGT+AGG | 0.567994 | 5.4:+3855077 | MS.gene22297:CDS |
GCGTTTAATTACCCTGATGG+TGG | 0.572883 | 5.4:+3853753 | MS.gene22297:CDS |
TACTTCATGCAAGATTTCAA+AGG | 0.573102 | 5.4:+3853483 | MS.gene22297:CDS |
GCCAATTGATGAGGAACCAA+TGG | 0.574717 | 5.4:+3853530 | MS.gene22297:CDS |
GCCCAGAAATCATTGCTACC+AGG | 0.583800 | 5.4:+3855145 | MS.gene22297:CDS |
AGATCTTCTGAGGGAACAGG+TGG | 0.592366 | 5.4:+3853456 | MS.gene22297:CDS |
GTTTAATTACCCTGATGGTG+GGG | 0.592966 | 5.4:+3853755 | MS.gene22297:CDS |
CATGCAAGATTTCAAAGGTG+TGG | 0.594948 | 5.4:+3853488 | MS.gene22297:CDS |
GAAGCGTTTAATTACCCTGA+TGG | 0.595781 | 5.4:+3853750 | MS.gene22297:CDS |
TTATATATTGGATCATCCAA+AGG | 0.598620 | 5.4:+3853650 | MS.gene22297:CDS |
TTTGAGGATGGATCATAAGG+TGG | 0.602051 | 5.4:+3853788 | MS.gene22297:CDS |
CGAATGCAGATAGGCATGCA+GGG | 0.605455 | 5.4:+3853919 | MS.gene22297:CDS |
GAGTATGGCTGACGTGCTTG+AGG | 0.611194 | 5.4:-3854896 | None:intergenic |
TCTATCATATCCCATAGGAA+AGG | 0.618347 | 5.4:-3853393 | None:intergenic |
AAACCTGTTAGATCTTCTGA+GGG | 0.622266 | 5.4:+3853447 | MS.gene22297:CDS |
CCTACACATGATGCTTCCAA+CGG | 0.625450 | 5.4:-3855077 | None:intergenic |
GAACAAAGAATCAGTGATCG+AGG | 0.625787 | 5.4:+3855108 | MS.gene22297:CDS |
AGTAACACCAATGCGTGTGT+TGG | 0.628419 | 5.4:+3852768 | None:intergenic |
TCAACAACATTGTGGAAATG+CGG | 0.628972 | 5.4:-3855021 | None:intergenic |
AATGCGGTGATGAAAGAGTA+CGG | 0.631647 | 5.4:+3852895 | MS.gene22297:CDS |
AGCCACAATCCCCACCATCA+GGG | 0.637152 | 5.4:-3853764 | None:intergenic |
TTGCATCTATCATATCCCAT+AGG | 0.637801 | 5.4:-3853398 | None:intergenic |
TGAGGATGGATCATAAGGTG+GGG | 0.651663 | 5.4:+3853790 | MS.gene22297:CDS |
TCTTGCACAGGAAAAGCACC+AGG | 0.657475 | 5.4:-3853861 | None:intergenic |
AATTGATGAGGAACCAATGG+CGG | 0.662251 | 5.4:+3853533 | MS.gene22297:CDS |
TGTGAGGACAATGTGTGGGA+AGG | 0.662882 | 5.4:+3852978 | MS.gene22297:CDS |
ATTGTTGTGAGGACAATGTG+TGG | 0.666886 | 5.4:+3852973 | MS.gene22297:CDS |
TTGTTGTGAGGACAATGTGT+GGG | 0.668421 | 5.4:+3852974 | MS.gene22297:CDS |
CACCGCACCATAACCGTAGG+CGG | 0.670788 | 5.4:-3853720 | None:intergenic |
AATTGTGAGGATATTGGACC+TGG | 0.674707 | 5.4:+3853843 | MS.gene22297:CDS |
TTCCGCCTACGGTTATGGTG+CGG | 0.680938 | 5.4:+3853718 | MS.gene22297:CDS |
ATCATTGCTACCAGGCACGG+AGG | 0.695943 | 5.4:+3855153 | MS.gene22297:CDS |
ATTTCGACAGCTCACCAAGG+CGG | 0.700271 | 5.4:-3855216 | None:intergenic |
AAACACCGCACCATAACCGT+AGG | 0.703540 | 5.4:-3853723 | None:intergenic |
GATCTTCTGAGGGAACAGGT+GGG | 0.712393 | 5.4:+3853457 | MS.gene22297:CDS |
ATGGCGGTTAATAATCCGCG+TGG | 0.713372 | 5.4:+3853549 | MS.gene22297:CDS |
GAGTAATGATGGTAATTGTG+AGG | 0.714535 | 5.4:+3853830 | MS.gene22297:CDS |
TCTATTTCGACAGCTCACCA+AGG | 0.716631 | 5.4:-3855219 | None:intergenic |
ACCGAAACCGGCAATCCACG+CGG | 0.729544 | 5.4:-3853564 | None:intergenic |
AGAATTATCTCGTAACAATG+CGG | 0.734694 | 5.4:+3852879 | MS.gene22297:CDS |
GCTTCACCAGACACCAAACG+CGG | 0.759039 | 5.4:-3853678 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATTGAATATTGAATCTA+CGG | + | chr5.4:3854345-3854364 | MS.gene22297:intron | 15.0% |
!! | TCATCTTATTGTTAAAAAAT+CGG | + | chr5.4:3853179-3853198 | MS.gene22297:CDS | 15.0% |
!! | AAAACATTATAATACTGCAT+AGG | - | chr5.4:3854056-3854075 | None:intergenic | 20.0% |
!! | AATAAAACAAGAATGTGAAA+TGG | - | chr5.4:3854031-3854050 | None:intergenic | 20.0% |
!! | AGGAATTGTATTAAAAGAAA+GGG | + | chr5.4:3853045-3853064 | MS.gene22297:CDS | 20.0% |
!! | CCAATAAAAATATATCTCTT+AGG | - | chr5.4:3854390-3854409 | None:intergenic | 20.0% |
!! | TAGGAATTGTATTAAAAGAA+AGG | + | chr5.4:3853044-3853063 | MS.gene22297:CDS | 20.0% |
!! | TATACAAAGTTAGCATAAAA+AGG | - | chr5.4:3854287-3854306 | None:intergenic | 20.0% |
!!! | CCTAAGAGATATATTTTTAT+TGG | + | chr5.4:3854387-3854406 | MS.gene22297:intron | 20.0% |
! | AAAAATCTTGCAATAACTAC+TGG | - | chr5.4:3854586-3854605 | None:intergenic | 25.0% |
! | AAAGGAAAAAAATTGATCCT+AGG | - | chr5.4:3853378-3853397 | None:intergenic | 25.0% |
! | AACAAAAAATCAAAACCAGA+GGG | - | chr5.4:3853336-3853355 | None:intergenic | 25.0% |
! | AACAAGTTATAAAAGTAGTC+TGG | - | chr5.4:3854650-3854669 | None:intergenic | 25.0% |
! | AAGGAAAAAAATTGATCCTA+GGG | - | chr5.4:3853377-3853396 | None:intergenic | 25.0% |
! | ACTTTCAATGGTTTGAAAAA+AGG | + | chr5.4:3853420-3853439 | MS.gene22297:CDS | 25.0% |
! | GAATTTGAATAATCAGAATC+AGG | + | chr5.4:3853284-3853303 | MS.gene22297:CDS | 25.0% |
! | GGAATTGTATTAAAAGAAAG+GGG | + | chr5.4:3853046-3853065 | MS.gene22297:CDS | 25.0% |
! | GTATATGTAATCAACTGTAT+CGG | - | chr5.4:3854924-3854943 | None:intergenic | 25.0% |
! | TAACAAAAAATCAAAACCAG+AGG | - | chr5.4:3853337-3853356 | None:intergenic | 25.0% |
! | TATATGTAATCAACTGTATC+GGG | - | chr5.4:3854923-3854942 | None:intergenic | 25.0% |
! | TCCAAAATAGATCTATACTA+TGG | - | chr5.4:3854179-3854198 | None:intergenic | 25.0% |
! | TTATATATTGGATCATCCAA+AGG | + | chr5.4:3853650-3853669 | MS.gene22297:CDS | 25.0% |
! | TTGTTTAGAAAAGAGTCAAA+TGG | + | chr5.4:3853948-3853967 | MS.gene22297:CDS | 25.0% |
!! | AAGCAAAATCTAGTTTCTAA+TGG | + | chr5.4:3852853-3852872 | MS.gene22297:CDS | 25.0% |
!! | AATGTTTTCTATGTTCTGTT+TGG | + | chr5.4:3854068-3854087 | MS.gene22297:intron | 25.0% |
!! | AATTTGAGTTTCAGATTGAT+CGG | + | chr5.4:3853001-3853020 | MS.gene22297:CDS | 25.0% |
!! | ATATGATTTTCATTGTTGTG+AGG | + | chr5.4:3852962-3852981 | MS.gene22297:CDS | 25.0% |
!! | TAACCATGTTCGTTATATTT+TGG | + | chr5.4:3854454-3854473 | MS.gene22297:intron | 25.0% |
!! | TCCATAGTATAGATCTATTT+TGG | + | chr5.4:3854175-3854194 | MS.gene22297:intron | 25.0% |
!! | TTCTTATACATCATTTTGCA+AGG | + | chr5.4:3854681-3854700 | MS.gene22297:intron | 25.0% |
!!! | ATAGAGCTTCTGAAATATTA+TGG | + | chr5.4:3854965-3854984 | MS.gene22297:CDS | 25.0% |
!!! | CAATTTTTTTCCTTTCCTAT+GGG | + | chr5.4:3853383-3853402 | MS.gene22297:CDS | 25.0% |
!!! | TCAATTTTTTTCCTTTCCTA+TGG | + | chr5.4:3853382-3853401 | MS.gene22297:CDS | 25.0% |
!!! | TGCTACTTTTGTTCATAATA+AGG | + | chr5.4:3853212-3853231 | MS.gene22297:CDS | 25.0% |
AAACACGCAAAAATGTTTCA+TGG | + | chr5.4:3852827-3852846 | MS.gene22297:CDS | 30.0% | |
AAGACAATAACCATGATCAA+TGG | - | chr5.4:3853991-3854010 | None:intergenic | 30.0% | |
AGAATTATCTCGTAACAATG+CGG | + | chr5.4:3852879-3852898 | MS.gene22297:CDS | 30.0% | |
AGACAATAACCATGATCAAT+GGG | - | chr5.4:3853990-3854009 | None:intergenic | 30.0% | |
AGTTGATTACATATACTCTC+TGG | + | chr5.4:3854928-3854947 | MS.gene22297:CDS | 30.0% | |
ATGATAGATGCAACTTTCAA+TGG | + | chr5.4:3853408-3853427 | MS.gene22297:CDS | 30.0% | |
CAGAAGTTTATGAGTAATGA+TGG | + | chr5.4:3853819-3853838 | MS.gene22297:CDS | 30.0% | |
CATCCAAAATATAACGAACA+TGG | - | chr5.4:3854460-3854479 | None:intergenic | 30.0% | |
CGAGATTCATCGTAATAAAT+CGG | - | chr5.4:3854222-3854241 | None:intergenic | 30.0% | |
GAACTTAATACGTATGTCAT+AGG | + | chr5.4:3854771-3854790 | MS.gene22297:intron | 30.0% | |
GAGATTCATCGTAATAAATC+GGG | - | chr5.4:3854221-3854240 | None:intergenic | 30.0% | |
GATGTCAGTTTAGACTTATA+TGG | + | chr5.4:3854536-3854555 | MS.gene22297:intron | 30.0% | |
TACTTCATGCAAGATTTCAA+AGG | + | chr5.4:3853483-3853502 | MS.gene22297:CDS | 30.0% | |
TGTATTAAAAGAAAGGGGAA+AGG | + | chr5.4:3853051-3853070 | MS.gene22297:CDS | 30.0% | |
TTACTTAAACTTAGTGCAGT+CGG | + | chr5.4:3854260-3854279 | MS.gene22297:intron | 30.0% | |
TTGAAGATTGCACATTTGAT+TGG | + | chr5.4:3854864-3854883 | MS.gene22297:CDS | 30.0% | |
! | TACTGGTAATGTTGTTCATT+TGG | + | chr5.4:3852924-3852943 | MS.gene22297:CDS | 30.0% |
! | TCTATACTATGGATTGACAT+CGG | - | chr5.4:3854168-3854187 | None:intergenic | 30.0% |
!! | AGCTTCTGAAATATTATGGT+TGG | + | chr5.4:3854969-3854988 | MS.gene22297:CDS | 30.0% |
!! | GCTTCTGAAATATTATGGTT+GGG | + | chr5.4:3854970-3854989 | MS.gene22297:CDS | 30.0% |
!! | TGTTTTTAAGCCAATTGATG+AGG | + | chr5.4:3853521-3853540 | MS.gene22297:CDS | 30.0% |
AAACCTGTTAGATCTTCTGA+GGG | + | chr5.4:3853447-3853466 | MS.gene22297:CDS | 35.0% | |
AAATGGTGACTTACTTTCTC+AGG | - | chr5.4:3854014-3854033 | None:intergenic | 35.0% | |
AATGACAAAAGATAAGCGAC+TGG | - | chr5.4:3854311-3854330 | None:intergenic | 35.0% | |
AGAAGTTGCGGCTTATATAT+TGG | + | chr5.4:3853638-3853657 | MS.gene22297:CDS | 35.0% | |
CAATTGCATCAGTGAAAATG+AGG | + | chr5.4:3852800-3852819 | MS.gene22297:CDS | 35.0% | |
CACAATGTTGTTGAAGAAAG+GGG | + | chr5.4:3855030-3855049 | MS.gene22297:CDS | 35.0% | |
CAGTGTGCTTGATATAAGAA+TGG | + | chr5.4:3853896-3853915 | MS.gene22297:CDS | 35.0% | |
CCACAATGTTGTTGAAGAAA+GGG | + | chr5.4:3855029-3855048 | MS.gene22297:CDS | 35.0% | |
GAATAATCAGAATCAGGATG+AGG | + | chr5.4:3853290-3853309 | MS.gene22297:CDS | 35.0% | |
GAGTAATGATGGTAATTGTG+AGG | + | chr5.4:3853830-3853849 | MS.gene22297:CDS | 35.0% | |
GATGGTAATTGTGAGGATAT+TGG | + | chr5.4:3853837-3853856 | MS.gene22297:CDS | 35.0% | |
TAAACCTGTTAGATCTTCTG+AGG | + | chr5.4:3853446-3853465 | MS.gene22297:CDS | 35.0% | |
TCAACAACATTGTGGAAATG+CGG | - | chr5.4:3855024-3855043 | None:intergenic | 35.0% | |
TCCACAATGTTGTTGAAGAA+AGG | + | chr5.4:3855028-3855047 | MS.gene22297:CDS | 35.0% | |
TCTATCATATCCCATAGGAA+AGG | - | chr5.4:3853396-3853415 | None:intergenic | 35.0% | |
TTGCATCTATCATATCCCAT+AGG | - | chr5.4:3853401-3853420 | None:intergenic | 35.0% | |
!!! | AGGTTTTGTTGATCTTGTTG+AGG | + | chr5.4:3853071-3853090 | MS.gene22297:CDS | 35.0% |
!!! | GAACAAGAGTTTTTTTGCAG+CGG | + | chr5.4:3853096-3853115 | MS.gene22297:CDS | 35.0% |
AAGGTTATAGAACAACCCTC+TGG | + | chr5.4:3853318-3853337 | MS.gene22297:CDS | 40.0% | |
AATGCGGTGATGAAAGAGTA+CGG | + | chr5.4:3852895-3852914 | MS.gene22297:CDS | 40.0% | |
AATTGATGAGGAACCAATGG+CGG | + | chr5.4:3853533-3853552 | MS.gene22297:CDS | 40.0% | |
AATTGTGAGGATATTGGACC+TGG | + | chr5.4:3853843-3853862 | MS.gene22297:CDS | 40.0% | |
AGTTTCAGATTGATCGGCAT+AGG | + | chr5.4:3853007-3853026 | MS.gene22297:CDS | 40.0% | |
ATACTCTCTGGATGCTGAAA+AGG | + | chr5.4:3854940-3854959 | MS.gene22297:CDS | 40.0% | |
ATAGGAACGTTGCACATCTT+AGG | + | chr5.4:3853025-3853044 | MS.gene22297:CDS | 40.0% | |
ATATTGGATCATCCAAAGGC+TGG | + | chr5.4:3853654-3853673 | MS.gene22297:CDS | 40.0% | |
ATCCTAGGGTTCACGAAAAT+CGG | - | chr5.4:3853363-3853382 | None:intergenic | 40.0% | |
ATTGTTGTGAGGACAATGTG+TGG | + | chr5.4:3852973-3852992 | MS.gene22297:CDS | 40.0% | |
CATGCAAGATTTCAAAGGTG+TGG | + | chr5.4:3853488-3853507 | MS.gene22297:CDS | 40.0% | |
CCCTTTCTTCAACAACATTG+TGG | - | chr5.4:3855032-3855051 | None:intergenic | 40.0% | |
CGAATTTGTATCGCAGATCA+TGG | + | chr5.4:3855189-3855208 | MS.gene22297:CDS | 40.0% | |
CGTTTAATTACCCTGATGGT+GGG | + | chr5.4:3853754-3853773 | MS.gene22297:CDS | 40.0% | |
GAACAAAGAATCAGTGATCG+AGG | + | chr5.4:3855108-3855127 | MS.gene22297:CDS | 40.0% | |
GAATCAGGATGAGGTTGTTA+AGG | + | chr5.4:3853299-3853318 | MS.gene22297:CDS | 40.0% | |
TAAGAATGGCGAATGCAGAT+AGG | + | chr5.4:3853910-3853929 | MS.gene22297:CDS | 40.0% | |
TTGAGGATGGATCATAAGGT+GGG | + | chr5.4:3853789-3853808 | MS.gene22297:CDS | 40.0% | |
TTGTTGTGAGGACAATGTGT+GGG | + | chr5.4:3852974-3852993 | MS.gene22297:CDS | 40.0% | |
TTTGAGGATGGATCATAAGG+TGG | + | chr5.4:3853788-3853807 | MS.gene22297:CDS | 40.0% | |
! | AAAGAGTACGGTGTAACTAC+TGG | + | chr5.4:3852907-3852926 | MS.gene22297:CDS | 40.0% |
! | CTCTTTGAGGATGGATCATA+AGG | + | chr5.4:3853785-3853804 | MS.gene22297:CDS | 40.0% |
! | GAAGCGTTTAATTACCCTGA+TGG | + | chr5.4:3853750-3853769 | MS.gene22297:CDS | 40.0% |
! | GCGAAAAGCTTGATGATAAG+AGG | + | chr5.4:3853118-3853137 | MS.gene22297:CDS | 40.0% |
! | GTTTAATTACCCTGATGGTG+GGG | + | chr5.4:3853755-3853774 | MS.gene22297:CDS | 40.0% |
!! | GCACATTTGATTGGCTTTAC+TGG | + | chr5.4:3854873-3854892 | MS.gene22297:CDS | 40.0% |
AATGGTGAGGGATTGAAGAG+AGG | + | chr5.4:3853588-3853607 | MS.gene22297:CDS | 45.0% | |
ACTGACATCTGCATCTCAGT+TGG | - | chr5.4:3854525-3854544 | None:intergenic | 45.0% | |
AGTGTTCTAGCACTCTCAAC+TGG | - | chr5.4:3855001-3855020 | None:intergenic | 45.0% | |
ATCTTATGCACCTCTTGCAC+AGG | - | chr5.4:3853876-3853895 | None:intergenic | 45.0% | |
ATGATGCTTCCAACGGCATA+GGG | - | chr5.4:3855073-3855092 | None:intergenic | 45.0% | |
ATGGTGAGGGATTGAAGAGA+GGG | + | chr5.4:3853589-3853608 | MS.gene22297:CDS | 45.0% | |
CATGCATACGAAGTTGCTGA+AGG | + | chr5.4:3854729-3854748 | MS.gene22297:intron | 45.0% | |
CCTACACATGATGCTTCCAA+CGG | - | chr5.4:3855080-3855099 | None:intergenic | 45.0% | |
CTGCTCATTCCCATTGATCA+TGG | + | chr5.4:3853978-3853997 | MS.gene22297:CDS | 45.0% | |
CTTCAGCAACTTCGTATGCA+TGG | - | chr5.4:3854731-3854750 | None:intergenic | 45.0% | |
GAAATCATTGCTACCAGGCA+CGG | + | chr5.4:3855150-3855169 | MS.gene22297:CDS | 45.0% | |
GCCAATTGATGAGGAACCAA+TGG | + | chr5.4:3853530-3853549 | MS.gene22297:CDS | 45.0% | |
GCCTGGTAGCAATGATTTCT+GGG | - | chr5.4:3855149-3855168 | None:intergenic | 45.0% | |
GCGTTTAATTACCCTGATGG+TGG | + | chr5.4:3853753-3853772 | MS.gene22297:CDS | 45.0% | |
GTTCCCTCAGAAGATCTAAC+AGG | - | chr5.4:3853453-3853472 | None:intergenic | 45.0% | |
TCAACTGTATCGGGAGAGTA+TGG | - | chr5.4:3854914-3854933 | None:intergenic | 45.0% | |
TGAGGATGGATCATAAGGTG+GGG | + | chr5.4:3853790-3853809 | MS.gene22297:CDS | 45.0% | |
TGCCTGGTAGCAATGATTTC+TGG | - | chr5.4:3855150-3855169 | None:intergenic | 45.0% | |
TTGAAGAAAGGGGTTGAGAG+AGG | + | chr5.4:3855040-3855059 | MS.gene22297:CDS | 45.0% | |
TTGAAGAGAGGGACAAAGGT+TGG | + | chr5.4:3853600-3853619 | MS.gene22297:CDS | 45.0% | |
! | GTTAGATCTTCTGAGGGAAC+AGG | + | chr5.4:3853453-3853472 | MS.gene22297:CDS | 45.0% |
! | TAATAATCCGCGTGGATTGC+CGG | + | chr5.4:3853557-3853576 | MS.gene22297:CDS | 45.0% |
!! | AACCGATTTTCGTGAACCCT+AGG | + | chr5.4:3853358-3853377 | MS.gene22297:CDS | 45.0% |
!! | CGTTGGAAGCATCATGTGTA+GGG | + | chr5.4:3855078-3855097 | MS.gene22297:CDS | 45.0% |
!! | GCCATTGGTTCCTCATCAAT+TGG | - | chr5.4:3853534-3853553 | None:intergenic | 45.0% |
AAACACCGCACCATAACCGT+AGG | - | chr5.4:3853726-3853745 | None:intergenic | 50.0% | |
AAATCAGATTCCTCCGTGCC+TGG | - | chr5.4:3855166-3855185 | None:intergenic | 50.0% | |
AGAGGGACAAAGGTTGGAGA+AGG | + | chr5.4:3853606-3853625 | MS.gene22297:CDS | 50.0% | |
AGGAGCTGTGAGAGAAGTTG+CGG | + | chr5.4:3853626-3853645 | MS.gene22297:CDS | 50.0% | |
ATGGCGGTTAATAATCCGCG+TGG | + | chr5.4:3853549-3853568 | MS.gene22297:CDS | 50.0% | |
ATTTCGACAGCTCACCAAGG+CGG | - | chr5.4:3855219-3855238 | None:intergenic | 50.0% | |
CATGATGCTTCCAACGGCAT+AGG | - | chr5.4:3855074-3855093 | None:intergenic | 50.0% | |
CGAATGCAGATAGGCATGCA+GGG | + | chr5.4:3853919-3853938 | MS.gene22297:CDS | 50.0% | |
GCATACGAAGTTGCTGAAGG+TGG | + | chr5.4:3854732-3854751 | MS.gene22297:intron | 50.0% | |
GCCCAGAAATCATTGCTACC+AGG | + | chr5.4:3855145-3855164 | MS.gene22297:CDS | 50.0% | |
GGGATTGAAGAGAGGGACAA+AGG | + | chr5.4:3853596-3853615 | MS.gene22297:CDS | 50.0% | |
TGTGAGGACAATGTGTGGGA+AGG | + | chr5.4:3852978-3852997 | MS.gene22297:CDS | 50.0% | |
! | AGATCTTCTGAGGGAACAGG+TGG | + | chr5.4:3853456-3853475 | MS.gene22297:CDS | 50.0% |
! | CGCGGATTATTAACCGCCAT+TGG | - | chr5.4:3853549-3853568 | None:intergenic | 50.0% |
! | GATCTTCTGAGGGAACAGGT+GGG | + | chr5.4:3853457-3853476 | MS.gene22297:CDS | 50.0% |
! | GGATTGTGGCTCTTTGAGGA+TGG | + | chr5.4:3853776-3853795 | MS.gene22297:CDS | 50.0% |
! | TGGTGCTTTTCCTGTGCAAG+AGG | + | chr5.4:3853863-3853882 | MS.gene22297:CDS | 50.0% |
! | TTGGTGTCTGGTGAAGCGAT+TGG | + | chr5.4:3853684-3853703 | MS.gene22297:CDS | 50.0% |
! | TTTTGCTGGTGTTCCGCCTA+CGG | + | chr5.4:3853707-3853726 | MS.gene22297:CDS | 50.0% |
!! | CCGTTGGAAGCATCATGTGT+AGG | + | chr5.4:3855077-3855096 | MS.gene22297:CDS | 50.0% |
!! | TCTTGCACAGGAAAAGCACC+AGG | - | chr5.4:3853864-3853883 | None:intergenic | 50.0% |
!!! | GGTGAAGCGATTGGTTTTGC+TGG | + | chr5.4:3853693-3853712 | MS.gene22297:CDS | 50.0% |
AGCCACAATCCCCACCATCA+GGG | - | chr5.4:3853767-3853786 | None:intergenic | 55.0% | |
ATCATTGCTACCAGGCACGG+AGG | + | chr5.4:3855153-3855172 | MS.gene22297:CDS | 55.0% | |
CAGATCATGGATTCCCGCCT+TGG | + | chr5.4:3855202-3855221 | MS.gene22297:CDS | 55.0% | |
CCCTCACCATTCACCGAAAC+CGG | - | chr5.4:3853579-3853598 | None:intergenic | 55.0% | |
CCGGTTTCGGTGAATGGTGA+GGG | + | chr5.4:3853576-3853595 | MS.gene22297:CDS | 55.0% | |
GAGTATGGCTGACGTGCTTG+AGG | - | chr5.4:3854899-3854918 | None:intergenic | 55.0% | |
GCGAATGCAGATAGGCATGC+AGG | + | chr5.4:3853918-3853937 | MS.gene22297:CDS | 55.0% | |
GCTTCACCAGACACCAAACG+CGG | - | chr5.4:3853681-3853700 | None:intergenic | 55.0% | |
GTGGGGATTGTGGCTCTTTG+AGG | + | chr5.4:3853772-3853791 | MS.gene22297:CDS | 55.0% | |
TGGTGTTCCGCCTACGGTTA+TGG | + | chr5.4:3853713-3853732 | MS.gene22297:CDS | 55.0% | |
TTCCGCCTACGGTTATGGTG+CGG | + | chr5.4:3853718-3853737 | MS.gene22297:CDS | 55.0% | |
TTTCGACAGCTCACCAAGGC+GGG | - | chr5.4:3855218-3855237 | None:intergenic | 55.0% | |
!! | GGATTGCCGGTTTCGGTGAA+TGG | + | chr5.4:3853570-3853589 | MS.gene22297:CDS | 55.0% |
!! | TACCCTGATGGTGGGGATTG+TGG | + | chr5.4:3853762-3853781 | MS.gene22297:CDS | 55.0% |
ACCAAACGCGGTCCAGCCTT+TGG | - | chr5.4:3853669-3853688 | None:intergenic | 60.0% | |
ACCGAAACCGGCAATCCACG+CGG | - | chr5.4:3853567-3853586 | None:intergenic | 60.0% | |
CACCGCACCATAACCGTAGG+CGG | - | chr5.4:3853723-3853742 | None:intergenic | 60.0% | |
GAGCCACAATCCCCACCATC+AGG | - | chr5.4:3853768-3853787 | None:intergenic | 60.0% | |
GGTCTCACTCCCTATGCCGT+TGG | + | chr5.4:3855061-3855080 | MS.gene22297:CDS | 60.0% | |
TCCAAAGGCTGGACCGCGTT+TGG | + | chr5.4:3853665-3853684 | MS.gene22297:CDS | 60.0% | |
! | GCCGGTTTCGGTGAATGGTG+AGG | + | chr5.4:3853575-3853594 | MS.gene22297:CDS | 60.0% |
!! | TCCGCGTGGATTGCCGGTTT+CGG | + | chr5.4:3853563-3853582 | MS.gene22297:CDS | 60.0% |
!! | GCTGGACCGCGTTTGGTGTC+TGG | + | chr5.4:3853672-3853691 | MS.gene22297:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 3852778 | 3855240 | 3852778 | ID=MS.gene22297 |
chr5.4 | mRNA | 3852778 | 3855240 | 3852778 | ID=MS.gene22297.t1;Parent=MS.gene22297 |
chr5.4 | exon | 3852778 | 3854019 | 3852778 | ID=MS.gene22297.t1.exon1;Parent=MS.gene22297.t1 |
chr5.4 | CDS | 3852778 | 3854019 | 3852778 | ID=cds.MS.gene22297.t1;Parent=MS.gene22297.t1 |
chr5.4 | exon | 3854863 | 3855240 | 3854863 | ID=MS.gene22297.t1.exon2;Parent=MS.gene22297.t1 |
chr5.4 | CDS | 3854863 | 3855240 | 3854863 | ID=cds.MS.gene22297.t1;Parent=MS.gene22297.t1 |
Gene Sequence |
Protein sequence |