AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22297


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22297.t1 MTR_5g009120 97.588 539 13 0 1 539 44 582 0.0 1091
MS.gene22297.t1 MTR_8g099565 69.052 559 148 5 1 539 40 593 0.0 789
MS.gene22297.t1 MTR_8g027610 57.374 556 204 9 1 538 51 591 0.0 646
MS.gene22297.t1 MTR_3g091400 57.037 540 221 6 1 534 40 574 0.0 618
MS.gene22297.t1 MTR_7g117395 56.498 554 211 11 1 537 50 590 0.0 607
MS.gene22297.t1 MTR_8g066090 32.237 456 250 11 66 513 43 447 2.67e-64 221
MS.gene22297.t1 MTR_0009s0120 40.317 315 163 7 211 513 152 453 1.18e-62 217
MS.gene22297.t1 MTR_7g017360 38.110 328 175 7 218 534 155 465 1.14e-59 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22297.t1 AT2G46500 57.303 534 207 5 1 534 48 560 0.0 630
MS.gene22297.t1 AT2G46500 57.303 534 207 5 1 534 48 560 0.0 630
MS.gene22297.t1 AT5G24240 53.875 542 229 6 2 538 47 572 0.0 590
MS.gene22297.t1 AT5G24240 53.875 542 229 6 2 538 47 572 0.0 590
MS.gene22297.t1 AT2G46500 52.022 371 157 5 1 371 48 397 1.19e-124 372
MS.gene22297.t1 AT2G03890 38.788 330 178 6 195 513 139 455 2.70e-64 221
MS.gene22297.t1 AT1G13640 41.522 289 144 5 218 494 154 429 2.46e-63 218
MS.gene22297.t1 AT1G13640 41.522 289 144 5 218 494 154 429 2.46e-63 218
MS.gene22297.t1 AT1G26270 38.235 340 171 6 205 536 145 453 3.35e-63 218
MS.gene22297.t1 AT2G40850 37.059 340 182 8 200 522 94 418 1.15e-62 215
MS.gene22297.t1 AT3G56600 38.125 320 167 6 206 512 85 386 7.77e-62 212
MS.gene22297.t1 AT3G56600 38.125 320 167 6 206 512 88 389 9.18e-62 212
MS.gene22297.t1 AT3G56600 38.125 320 167 6 206 512 88 389 9.18e-62 212
MS.gene22297.t1 AT2G03890 40.161 249 127 4 275 513 99 335 5.32e-49 177
MS.gene22297.t1 AT1G27570 30.224 268 150 9 285 537 387 632 6.04e-25 109
MS.gene22297.t1 AT1G27570 30.224 268 150 9 285 537 396 641 6.82e-25 109
MS.gene22297.t1 AT3G43950 33.803 142 77 5 288 425 78 206 1.44e-11 64.7

Find 129 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCTGGTAGCAATGATTTC+TGG 0.116857 5.4:-3855147 None:intergenic
GCACATTTGATTGGCTTTAC+TGG 0.236333 5.4:+3854873 MS.gene22297:CDS
ATAGAGCTTCTGAAATATTA+TGG 0.291106 5.4:+3854965 MS.gene22297:CDS
TAATAATCCGCGTGGATTGC+CGG 0.312705 5.4:+3853557 MS.gene22297:CDS
AGAAGTTGCGGCTTATATAT+TGG 0.319276 5.4:+3853638 MS.gene22297:CDS
TACTGGTAATGTTGTTCATT+TGG 0.334044 5.4:+3852924 MS.gene22297:CDS
GCCTGGTAGCAATGATTTCT+GGG 0.343431 5.4:-3855146 None:intergenic
ATCCTAGGGTTCACGAAAAT+CGG 0.363297 5.4:-3853360 None:intergenic
TCCGCGTGGATTGCCGGTTT+CGG 0.363471 5.4:+3853563 MS.gene22297:CDS
GTGGGGATTGTGGCTCTTTG+AGG 0.363682 5.4:+3853772 MS.gene22297:CDS
TGGTGTTCCGCCTACGGTTA+TGG 0.367323 5.4:+3853713 MS.gene22297:CDS
TTGAAGATTGCACATTTGAT+TGG 0.370246 5.4:+3854864 MS.gene22297:CDS
AAGCAAAATCTAGTTTCTAA+TGG 0.377281 5.4:+3852853 MS.gene22297:CDS
ACCAAACGCGGTCCAGCCTT+TGG 0.378332 5.4:-3853666 None:intergenic
CCCTCACCATTCACCGAAAC+CGG 0.379422 5.4:-3853576 None:intergenic
GCCATTGGTTCCTCATCAAT+TGG 0.383037 5.4:-3853531 None:intergenic
CGAATTTGTATCGCAGATCA+TGG 0.384306 5.4:+3855189 MS.gene22297:CDS
TCCAAAGGCTGGACCGCGTT+TGG 0.385239 5.4:+3853665 MS.gene22297:CDS
GGATTGCCGGTTTCGGTGAA+TGG 0.392525 5.4:+3853570 MS.gene22297:CDS
CCACAATGTTGTTGAAGAAA+GGG 0.392633 5.4:+3855029 MS.gene22297:CDS
ATGATAGATGCAACTTTCAA+TGG 0.393750 5.4:+3853408 MS.gene22297:CDS
GATGGTAATTGTGAGGATAT+TGG 0.395024 5.4:+3853837 MS.gene22297:CDS
TCCACAATGTTGTTGAAGAA+AGG 0.400392 5.4:+3855028 MS.gene22297:CDS
TTGAAGAGAGGGACAAAGGT+TGG 0.402804 5.4:+3853600 MS.gene22297:CDS
CAGAAGTTTATGAGTAATGA+TGG 0.410311 5.4:+3853819 MS.gene22297:CDS
TCAACTGTATCGGGAGAGTA+TGG 0.410892 5.4:-3854911 None:intergenic
GAGCCACAATCCCCACCATC+AGG 0.414679 5.4:-3853765 None:intergenic
GTTCCCTCAGAAGATCTAAC+AGG 0.417109 5.4:-3853450 None:intergenic
TAGGAATTGTATTAAAAGAA+AGG 0.420136 5.4:+3853044 MS.gene22297:CDS
GCTGGACCGCGTTTGGTGTC+TGG 0.423380 5.4:+3853672 MS.gene22297:CDS
AGGAATTGTATTAAAAGAAA+GGG 0.424400 5.4:+3853045 MS.gene22297:CDS
GAATCAGGATGAGGTTGTTA+AGG 0.426840 5.4:+3853299 MS.gene22297:CDS
ATAGGAACGTTGCACATCTT+AGG 0.430624 5.4:+3853025 MS.gene22297:CDS
AAATGGTGACTTACTTTCTC+AGG 0.430834 5.4:-3854011 None:intergenic
AGTGTTCTAGCACTCTCAAC+TGG 0.433384 5.4:-3854998 None:intergenic
CTCTTTGAGGATGGATCATA+AGG 0.440712 5.4:+3853785 MS.gene22297:CDS
AAGACAATAACCATGATCAA+TGG 0.441498 5.4:-3853988 None:intergenic
ATACTCTCTGGATGCTGAAA+AGG 0.444836 5.4:+3854940 MS.gene22297:CDS
GAATTTGAATAATCAGAATC+AGG 0.447450 5.4:+3853284 MS.gene22297:CDS
CTGCTCATTCCCATTGATCA+TGG 0.456539 5.4:+3853978 MS.gene22297:CDS
AGCTTCTGAAATATTATGGT+TGG 0.458037 5.4:+3854969 MS.gene22297:CDS
CAGATCATGGATTCCCGCCT+TGG 0.466401 5.4:+3855202 MS.gene22297:CDS
CCGGTTTCGGTGAATGGTGA+GGG 0.469852 5.4:+3853576 MS.gene22297:CDS
GGATTGTGGCTCTTTGAGGA+TGG 0.473673 5.4:+3853776 MS.gene22297:CDS
TACCCTGATGGTGGGGATTG+TGG 0.474991 5.4:+3853762 MS.gene22297:CDS
GCTTCTGAAATATTATGGTT+GGG 0.475469 5.4:+3854970 MS.gene22297:CDS
CGCGGATTATTAACCGCCAT+TGG 0.475646 5.4:-3853546 None:intergenic
AGACAATAACCATGATCAAT+GGG 0.483074 5.4:-3853987 None:intergenic
TATATGTAATCAACTGTATC+GGG 0.487936 5.4:-3854920 None:intergenic
GTTAGATCTTCTGAGGGAAC+AGG 0.492026 5.4:+3853453 MS.gene22297:CDS
AATTTGAGTTTCAGATTGAT+CGG 0.502943 5.4:+3853001 MS.gene22297:CDS
TTGAAGAAAGGGGTTGAGAG+AGG 0.503562 5.4:+3855040 MS.gene22297:CDS
CGTTTAATTACCCTGATGGT+GGG 0.504414 5.4:+3853754 MS.gene22297:CDS
GCGAAAAGCTTGATGATAAG+AGG 0.505944 5.4:+3853118 MS.gene22297:CDS
GTATATGTAATCAACTGTAT+CGG 0.506999 5.4:-3854921 None:intergenic
AAATCAGATTCCTCCGTGCC+TGG 0.508144 5.4:-3855163 None:intergenic
GGGATTGAAGAGAGGGACAA+AGG 0.509599 5.4:+3853596 MS.gene22297:CDS
TTGTTTAGAAAAGAGTCAAA+TGG 0.514272 5.4:+3853948 MS.gene22297:CDS
ATGGTGAGGGATTGAAGAGA+GGG 0.516819 5.4:+3853589 MS.gene22297:CDS
TTTCGACAGCTCACCAAGGC+GGG 0.517562 5.4:-3855215 None:intergenic
TAAGAATGGCGAATGCAGAT+AGG 0.518671 5.4:+3853910 MS.gene22297:CDS
CAATTGCATCAGTGAAAATG+AGG 0.519789 5.4:+3852800 MS.gene22297:CDS
AAAGAGTACGGTGTAACTAC+TGG 0.519841 5.4:+3852907 MS.gene22297:CDS
CGTTGGAAGCATCATGTGTA+GGG 0.519995 5.4:+3855078 MS.gene22297:CDS
AGTTGATTACATATACTCTC+TGG 0.522946 5.4:+3854928 MS.gene22297:CDS
GCGAATGCAGATAGGCATGC+AGG 0.523425 5.4:+3853918 MS.gene22297:CDS
GCCGGTTTCGGTGAATGGTG+AGG 0.524007 5.4:+3853575 MS.gene22297:CDS
CATGATGCTTCCAACGGCAT+AGG 0.525963 5.4:-3855071 None:intergenic
CACAATGTTGTTGAAGAAAG+GGG 0.526814 5.4:+3855030 MS.gene22297:CDS
ATATTGGATCATCCAAAGGC+TGG 0.527791 5.4:+3853654 MS.gene22297:CDS
CCCTTTCTTCAACAACATTG+TGG 0.535835 5.4:-3855029 None:intergenic
ATCTTATGCACCTCTTGCAC+AGG 0.541451 5.4:-3853873 None:intergenic
AAGGTTATAGAACAACCCTC+TGG 0.544988 5.4:+3853318 MS.gene22297:CDS
TCAGATTCCAACACACGCAT+TGG 0.545912 5.4:-3852775 None:intergenic
TGTATTAAAAGAAAGGGGAA+AGG 0.545961 5.4:+3853051 MS.gene22297:CDS
TTGGTGTCTGGTGAAGCGAT+TGG 0.546477 5.4:+3853684 MS.gene22297:CDS
AGTTTCAGATTGATCGGCAT+AGG 0.546957 5.4:+3853007 MS.gene22297:CDS
GGAATTGTATTAAAAGAAAG+GGG 0.547344 5.4:+3853046 MS.gene22297:CDS
AGGAGCTGTGAGAGAAGTTG+CGG 0.549114 5.4:+3853626 MS.gene22297:CDS
CAGTGTGCTTGATATAAGAA+TGG 0.555819 5.4:+3853896 MS.gene22297:CDS
ATGATGCTTCCAACGGCATA+GGG 0.557381 5.4:-3855070 None:intergenic
GAAATCATTGCTACCAGGCA+CGG 0.558584 5.4:+3855150 MS.gene22297:CDS
TAAACCTGTTAGATCTTCTG+AGG 0.559006 5.4:+3853446 MS.gene22297:CDS
TTGAGGATGGATCATAAGGT+GGG 0.562337 5.4:+3853789 MS.gene22297:CDS
GGTCTCACTCCCTATGCCGT+TGG 0.563252 5.4:+3855061 MS.gene22297:CDS
AGAGGGACAAAGGTTGGAGA+AGG 0.563732 5.4:+3853606 MS.gene22297:CDS
GAATAATCAGAATCAGGATG+AGG 0.566712 5.4:+3853290 MS.gene22297:CDS
AATGGTGAGGGATTGAAGAG+AGG 0.566744 5.4:+3853588 MS.gene22297:CDS
CCGTTGGAAGCATCATGTGT+AGG 0.567994 5.4:+3855077 MS.gene22297:CDS
GCGTTTAATTACCCTGATGG+TGG 0.572883 5.4:+3853753 MS.gene22297:CDS
TACTTCATGCAAGATTTCAA+AGG 0.573102 5.4:+3853483 MS.gene22297:CDS
GCCAATTGATGAGGAACCAA+TGG 0.574717 5.4:+3853530 MS.gene22297:CDS
GCCCAGAAATCATTGCTACC+AGG 0.583800 5.4:+3855145 MS.gene22297:CDS
AGATCTTCTGAGGGAACAGG+TGG 0.592366 5.4:+3853456 MS.gene22297:CDS
GTTTAATTACCCTGATGGTG+GGG 0.592966 5.4:+3853755 MS.gene22297:CDS
CATGCAAGATTTCAAAGGTG+TGG 0.594948 5.4:+3853488 MS.gene22297:CDS
GAAGCGTTTAATTACCCTGA+TGG 0.595781 5.4:+3853750 MS.gene22297:CDS
TTATATATTGGATCATCCAA+AGG 0.598620 5.4:+3853650 MS.gene22297:CDS
TTTGAGGATGGATCATAAGG+TGG 0.602051 5.4:+3853788 MS.gene22297:CDS
CGAATGCAGATAGGCATGCA+GGG 0.605455 5.4:+3853919 MS.gene22297:CDS
GAGTATGGCTGACGTGCTTG+AGG 0.611194 5.4:-3854896 None:intergenic
TCTATCATATCCCATAGGAA+AGG 0.618347 5.4:-3853393 None:intergenic
AAACCTGTTAGATCTTCTGA+GGG 0.622266 5.4:+3853447 MS.gene22297:CDS
CCTACACATGATGCTTCCAA+CGG 0.625450 5.4:-3855077 None:intergenic
GAACAAAGAATCAGTGATCG+AGG 0.625787 5.4:+3855108 MS.gene22297:CDS
AGTAACACCAATGCGTGTGT+TGG 0.628419 5.4:+3852768 None:intergenic
TCAACAACATTGTGGAAATG+CGG 0.628972 5.4:-3855021 None:intergenic
AATGCGGTGATGAAAGAGTA+CGG 0.631647 5.4:+3852895 MS.gene22297:CDS
AGCCACAATCCCCACCATCA+GGG 0.637152 5.4:-3853764 None:intergenic
TTGCATCTATCATATCCCAT+AGG 0.637801 5.4:-3853398 None:intergenic
TGAGGATGGATCATAAGGTG+GGG 0.651663 5.4:+3853790 MS.gene22297:CDS
TCTTGCACAGGAAAAGCACC+AGG 0.657475 5.4:-3853861 None:intergenic
AATTGATGAGGAACCAATGG+CGG 0.662251 5.4:+3853533 MS.gene22297:CDS
TGTGAGGACAATGTGTGGGA+AGG 0.662882 5.4:+3852978 MS.gene22297:CDS
ATTGTTGTGAGGACAATGTG+TGG 0.666886 5.4:+3852973 MS.gene22297:CDS
TTGTTGTGAGGACAATGTGT+GGG 0.668421 5.4:+3852974 MS.gene22297:CDS
CACCGCACCATAACCGTAGG+CGG 0.670788 5.4:-3853720 None:intergenic
AATTGTGAGGATATTGGACC+TGG 0.674707 5.4:+3853843 MS.gene22297:CDS
TTCCGCCTACGGTTATGGTG+CGG 0.680938 5.4:+3853718 MS.gene22297:CDS
ATCATTGCTACCAGGCACGG+AGG 0.695943 5.4:+3855153 MS.gene22297:CDS
ATTTCGACAGCTCACCAAGG+CGG 0.700271 5.4:-3855216 None:intergenic
AAACACCGCACCATAACCGT+AGG 0.703540 5.4:-3853723 None:intergenic
GATCTTCTGAGGGAACAGGT+GGG 0.712393 5.4:+3853457 MS.gene22297:CDS
ATGGCGGTTAATAATCCGCG+TGG 0.713372 5.4:+3853549 MS.gene22297:CDS
GAGTAATGATGGTAATTGTG+AGG 0.714535 5.4:+3853830 MS.gene22297:CDS
TCTATTTCGACAGCTCACCA+AGG 0.716631 5.4:-3855219 None:intergenic
ACCGAAACCGGCAATCCACG+CGG 0.729544 5.4:-3853564 None:intergenic
AGAATTATCTCGTAACAATG+CGG 0.734694 5.4:+3852879 MS.gene22297:CDS
GCTTCACCAGACACCAAACG+CGG 0.759039 5.4:-3853678 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTGAATATTGAATCTA+CGG + chr5.4:3854345-3854364 MS.gene22297:intron 15.0%
!! TCATCTTATTGTTAAAAAAT+CGG + chr5.4:3853179-3853198 MS.gene22297:CDS 15.0%
!! AAAACATTATAATACTGCAT+AGG - chr5.4:3854056-3854075 None:intergenic 20.0%
!! AATAAAACAAGAATGTGAAA+TGG - chr5.4:3854031-3854050 None:intergenic 20.0%
!! AGGAATTGTATTAAAAGAAA+GGG + chr5.4:3853045-3853064 MS.gene22297:CDS 20.0%
!! CCAATAAAAATATATCTCTT+AGG - chr5.4:3854390-3854409 None:intergenic 20.0%
!! TAGGAATTGTATTAAAAGAA+AGG + chr5.4:3853044-3853063 MS.gene22297:CDS 20.0%
!! TATACAAAGTTAGCATAAAA+AGG - chr5.4:3854287-3854306 None:intergenic 20.0%
!!! CCTAAGAGATATATTTTTAT+TGG + chr5.4:3854387-3854406 MS.gene22297:intron 20.0%
! AAAAATCTTGCAATAACTAC+TGG - chr5.4:3854586-3854605 None:intergenic 25.0%
! AAAGGAAAAAAATTGATCCT+AGG - chr5.4:3853378-3853397 None:intergenic 25.0%
! AACAAAAAATCAAAACCAGA+GGG - chr5.4:3853336-3853355 None:intergenic 25.0%
! AACAAGTTATAAAAGTAGTC+TGG - chr5.4:3854650-3854669 None:intergenic 25.0%
! AAGGAAAAAAATTGATCCTA+GGG - chr5.4:3853377-3853396 None:intergenic 25.0%
! ACTTTCAATGGTTTGAAAAA+AGG + chr5.4:3853420-3853439 MS.gene22297:CDS 25.0%
! GAATTTGAATAATCAGAATC+AGG + chr5.4:3853284-3853303 MS.gene22297:CDS 25.0%
! GGAATTGTATTAAAAGAAAG+GGG + chr5.4:3853046-3853065 MS.gene22297:CDS 25.0%
! GTATATGTAATCAACTGTAT+CGG - chr5.4:3854924-3854943 None:intergenic 25.0%
! TAACAAAAAATCAAAACCAG+AGG - chr5.4:3853337-3853356 None:intergenic 25.0%
! TATATGTAATCAACTGTATC+GGG - chr5.4:3854923-3854942 None:intergenic 25.0%
! TCCAAAATAGATCTATACTA+TGG - chr5.4:3854179-3854198 None:intergenic 25.0%
! TTATATATTGGATCATCCAA+AGG + chr5.4:3853650-3853669 MS.gene22297:CDS 25.0%
! TTGTTTAGAAAAGAGTCAAA+TGG + chr5.4:3853948-3853967 MS.gene22297:CDS 25.0%
!! AAGCAAAATCTAGTTTCTAA+TGG + chr5.4:3852853-3852872 MS.gene22297:CDS 25.0%
!! AATGTTTTCTATGTTCTGTT+TGG + chr5.4:3854068-3854087 MS.gene22297:intron 25.0%
!! AATTTGAGTTTCAGATTGAT+CGG + chr5.4:3853001-3853020 MS.gene22297:CDS 25.0%
!! ATATGATTTTCATTGTTGTG+AGG + chr5.4:3852962-3852981 MS.gene22297:CDS 25.0%
!! TAACCATGTTCGTTATATTT+TGG + chr5.4:3854454-3854473 MS.gene22297:intron 25.0%
!! TCCATAGTATAGATCTATTT+TGG + chr5.4:3854175-3854194 MS.gene22297:intron 25.0%
!! TTCTTATACATCATTTTGCA+AGG + chr5.4:3854681-3854700 MS.gene22297:intron 25.0%
!!! ATAGAGCTTCTGAAATATTA+TGG + chr5.4:3854965-3854984 MS.gene22297:CDS 25.0%
!!! CAATTTTTTTCCTTTCCTAT+GGG + chr5.4:3853383-3853402 MS.gene22297:CDS 25.0%
!!! TCAATTTTTTTCCTTTCCTA+TGG + chr5.4:3853382-3853401 MS.gene22297:CDS 25.0%
!!! TGCTACTTTTGTTCATAATA+AGG + chr5.4:3853212-3853231 MS.gene22297:CDS 25.0%
AAACACGCAAAAATGTTTCA+TGG + chr5.4:3852827-3852846 MS.gene22297:CDS 30.0%
AAGACAATAACCATGATCAA+TGG - chr5.4:3853991-3854010 None:intergenic 30.0%
AGAATTATCTCGTAACAATG+CGG + chr5.4:3852879-3852898 MS.gene22297:CDS 30.0%
AGACAATAACCATGATCAAT+GGG - chr5.4:3853990-3854009 None:intergenic 30.0%
AGTTGATTACATATACTCTC+TGG + chr5.4:3854928-3854947 MS.gene22297:CDS 30.0%
ATGATAGATGCAACTTTCAA+TGG + chr5.4:3853408-3853427 MS.gene22297:CDS 30.0%
CAGAAGTTTATGAGTAATGA+TGG + chr5.4:3853819-3853838 MS.gene22297:CDS 30.0%
CATCCAAAATATAACGAACA+TGG - chr5.4:3854460-3854479 None:intergenic 30.0%
CGAGATTCATCGTAATAAAT+CGG - chr5.4:3854222-3854241 None:intergenic 30.0%
GAACTTAATACGTATGTCAT+AGG + chr5.4:3854771-3854790 MS.gene22297:intron 30.0%
GAGATTCATCGTAATAAATC+GGG - chr5.4:3854221-3854240 None:intergenic 30.0%
GATGTCAGTTTAGACTTATA+TGG + chr5.4:3854536-3854555 MS.gene22297:intron 30.0%
TACTTCATGCAAGATTTCAA+AGG + chr5.4:3853483-3853502 MS.gene22297:CDS 30.0%
TGTATTAAAAGAAAGGGGAA+AGG + chr5.4:3853051-3853070 MS.gene22297:CDS 30.0%
TTACTTAAACTTAGTGCAGT+CGG + chr5.4:3854260-3854279 MS.gene22297:intron 30.0%
TTGAAGATTGCACATTTGAT+TGG + chr5.4:3854864-3854883 MS.gene22297:CDS 30.0%
! TACTGGTAATGTTGTTCATT+TGG + chr5.4:3852924-3852943 MS.gene22297:CDS 30.0%
! TCTATACTATGGATTGACAT+CGG - chr5.4:3854168-3854187 None:intergenic 30.0%
!! AGCTTCTGAAATATTATGGT+TGG + chr5.4:3854969-3854988 MS.gene22297:CDS 30.0%
!! GCTTCTGAAATATTATGGTT+GGG + chr5.4:3854970-3854989 MS.gene22297:CDS 30.0%
!! TGTTTTTAAGCCAATTGATG+AGG + chr5.4:3853521-3853540 MS.gene22297:CDS 30.0%
AAACCTGTTAGATCTTCTGA+GGG + chr5.4:3853447-3853466 MS.gene22297:CDS 35.0%
AAATGGTGACTTACTTTCTC+AGG - chr5.4:3854014-3854033 None:intergenic 35.0%
AATGACAAAAGATAAGCGAC+TGG - chr5.4:3854311-3854330 None:intergenic 35.0%
AGAAGTTGCGGCTTATATAT+TGG + chr5.4:3853638-3853657 MS.gene22297:CDS 35.0%
CAATTGCATCAGTGAAAATG+AGG + chr5.4:3852800-3852819 MS.gene22297:CDS 35.0%
CACAATGTTGTTGAAGAAAG+GGG + chr5.4:3855030-3855049 MS.gene22297:CDS 35.0%
CAGTGTGCTTGATATAAGAA+TGG + chr5.4:3853896-3853915 MS.gene22297:CDS 35.0%
CCACAATGTTGTTGAAGAAA+GGG + chr5.4:3855029-3855048 MS.gene22297:CDS 35.0%
GAATAATCAGAATCAGGATG+AGG + chr5.4:3853290-3853309 MS.gene22297:CDS 35.0%
GAGTAATGATGGTAATTGTG+AGG + chr5.4:3853830-3853849 MS.gene22297:CDS 35.0%
GATGGTAATTGTGAGGATAT+TGG + chr5.4:3853837-3853856 MS.gene22297:CDS 35.0%
TAAACCTGTTAGATCTTCTG+AGG + chr5.4:3853446-3853465 MS.gene22297:CDS 35.0%
TCAACAACATTGTGGAAATG+CGG - chr5.4:3855024-3855043 None:intergenic 35.0%
TCCACAATGTTGTTGAAGAA+AGG + chr5.4:3855028-3855047 MS.gene22297:CDS 35.0%
TCTATCATATCCCATAGGAA+AGG - chr5.4:3853396-3853415 None:intergenic 35.0%
TTGCATCTATCATATCCCAT+AGG - chr5.4:3853401-3853420 None:intergenic 35.0%
!!! AGGTTTTGTTGATCTTGTTG+AGG + chr5.4:3853071-3853090 MS.gene22297:CDS 35.0%
!!! GAACAAGAGTTTTTTTGCAG+CGG + chr5.4:3853096-3853115 MS.gene22297:CDS 35.0%
AAGGTTATAGAACAACCCTC+TGG + chr5.4:3853318-3853337 MS.gene22297:CDS 40.0%
AATGCGGTGATGAAAGAGTA+CGG + chr5.4:3852895-3852914 MS.gene22297:CDS 40.0%
AATTGATGAGGAACCAATGG+CGG + chr5.4:3853533-3853552 MS.gene22297:CDS 40.0%
AATTGTGAGGATATTGGACC+TGG + chr5.4:3853843-3853862 MS.gene22297:CDS 40.0%
AGTTTCAGATTGATCGGCAT+AGG + chr5.4:3853007-3853026 MS.gene22297:CDS 40.0%
ATACTCTCTGGATGCTGAAA+AGG + chr5.4:3854940-3854959 MS.gene22297:CDS 40.0%
ATAGGAACGTTGCACATCTT+AGG + chr5.4:3853025-3853044 MS.gene22297:CDS 40.0%
ATATTGGATCATCCAAAGGC+TGG + chr5.4:3853654-3853673 MS.gene22297:CDS 40.0%
ATCCTAGGGTTCACGAAAAT+CGG - chr5.4:3853363-3853382 None:intergenic 40.0%
ATTGTTGTGAGGACAATGTG+TGG + chr5.4:3852973-3852992 MS.gene22297:CDS 40.0%
CATGCAAGATTTCAAAGGTG+TGG + chr5.4:3853488-3853507 MS.gene22297:CDS 40.0%
CCCTTTCTTCAACAACATTG+TGG - chr5.4:3855032-3855051 None:intergenic 40.0%
CGAATTTGTATCGCAGATCA+TGG + chr5.4:3855189-3855208 MS.gene22297:CDS 40.0%
CGTTTAATTACCCTGATGGT+GGG + chr5.4:3853754-3853773 MS.gene22297:CDS 40.0%
GAACAAAGAATCAGTGATCG+AGG + chr5.4:3855108-3855127 MS.gene22297:CDS 40.0%
GAATCAGGATGAGGTTGTTA+AGG + chr5.4:3853299-3853318 MS.gene22297:CDS 40.0%
TAAGAATGGCGAATGCAGAT+AGG + chr5.4:3853910-3853929 MS.gene22297:CDS 40.0%
TTGAGGATGGATCATAAGGT+GGG + chr5.4:3853789-3853808 MS.gene22297:CDS 40.0%
TTGTTGTGAGGACAATGTGT+GGG + chr5.4:3852974-3852993 MS.gene22297:CDS 40.0%
TTTGAGGATGGATCATAAGG+TGG + chr5.4:3853788-3853807 MS.gene22297:CDS 40.0%
! AAAGAGTACGGTGTAACTAC+TGG + chr5.4:3852907-3852926 MS.gene22297:CDS 40.0%
! CTCTTTGAGGATGGATCATA+AGG + chr5.4:3853785-3853804 MS.gene22297:CDS 40.0%
! GAAGCGTTTAATTACCCTGA+TGG + chr5.4:3853750-3853769 MS.gene22297:CDS 40.0%
! GCGAAAAGCTTGATGATAAG+AGG + chr5.4:3853118-3853137 MS.gene22297:CDS 40.0%
! GTTTAATTACCCTGATGGTG+GGG + chr5.4:3853755-3853774 MS.gene22297:CDS 40.0%
!! GCACATTTGATTGGCTTTAC+TGG + chr5.4:3854873-3854892 MS.gene22297:CDS 40.0%
AATGGTGAGGGATTGAAGAG+AGG + chr5.4:3853588-3853607 MS.gene22297:CDS 45.0%
ACTGACATCTGCATCTCAGT+TGG - chr5.4:3854525-3854544 None:intergenic 45.0%
AGTGTTCTAGCACTCTCAAC+TGG - chr5.4:3855001-3855020 None:intergenic 45.0%
ATCTTATGCACCTCTTGCAC+AGG - chr5.4:3853876-3853895 None:intergenic 45.0%
ATGATGCTTCCAACGGCATA+GGG - chr5.4:3855073-3855092 None:intergenic 45.0%
ATGGTGAGGGATTGAAGAGA+GGG + chr5.4:3853589-3853608 MS.gene22297:CDS 45.0%
CATGCATACGAAGTTGCTGA+AGG + chr5.4:3854729-3854748 MS.gene22297:intron 45.0%
CCTACACATGATGCTTCCAA+CGG - chr5.4:3855080-3855099 None:intergenic 45.0%
CTGCTCATTCCCATTGATCA+TGG + chr5.4:3853978-3853997 MS.gene22297:CDS 45.0%
CTTCAGCAACTTCGTATGCA+TGG - chr5.4:3854731-3854750 None:intergenic 45.0%
GAAATCATTGCTACCAGGCA+CGG + chr5.4:3855150-3855169 MS.gene22297:CDS 45.0%
GCCAATTGATGAGGAACCAA+TGG + chr5.4:3853530-3853549 MS.gene22297:CDS 45.0%
GCCTGGTAGCAATGATTTCT+GGG - chr5.4:3855149-3855168 None:intergenic 45.0%
GCGTTTAATTACCCTGATGG+TGG + chr5.4:3853753-3853772 MS.gene22297:CDS 45.0%
GTTCCCTCAGAAGATCTAAC+AGG - chr5.4:3853453-3853472 None:intergenic 45.0%
TCAACTGTATCGGGAGAGTA+TGG - chr5.4:3854914-3854933 None:intergenic 45.0%
TGAGGATGGATCATAAGGTG+GGG + chr5.4:3853790-3853809 MS.gene22297:CDS 45.0%
TGCCTGGTAGCAATGATTTC+TGG - chr5.4:3855150-3855169 None:intergenic 45.0%
TTGAAGAAAGGGGTTGAGAG+AGG + chr5.4:3855040-3855059 MS.gene22297:CDS 45.0%
TTGAAGAGAGGGACAAAGGT+TGG + chr5.4:3853600-3853619 MS.gene22297:CDS 45.0%
! GTTAGATCTTCTGAGGGAAC+AGG + chr5.4:3853453-3853472 MS.gene22297:CDS 45.0%
! TAATAATCCGCGTGGATTGC+CGG + chr5.4:3853557-3853576 MS.gene22297:CDS 45.0%
!! AACCGATTTTCGTGAACCCT+AGG + chr5.4:3853358-3853377 MS.gene22297:CDS 45.0%
!! CGTTGGAAGCATCATGTGTA+GGG + chr5.4:3855078-3855097 MS.gene22297:CDS 45.0%
!! GCCATTGGTTCCTCATCAAT+TGG - chr5.4:3853534-3853553 None:intergenic 45.0%
AAACACCGCACCATAACCGT+AGG - chr5.4:3853726-3853745 None:intergenic 50.0%
AAATCAGATTCCTCCGTGCC+TGG - chr5.4:3855166-3855185 None:intergenic 50.0%
AGAGGGACAAAGGTTGGAGA+AGG + chr5.4:3853606-3853625 MS.gene22297:CDS 50.0%
AGGAGCTGTGAGAGAAGTTG+CGG + chr5.4:3853626-3853645 MS.gene22297:CDS 50.0%
ATGGCGGTTAATAATCCGCG+TGG + chr5.4:3853549-3853568 MS.gene22297:CDS 50.0%
ATTTCGACAGCTCACCAAGG+CGG - chr5.4:3855219-3855238 None:intergenic 50.0%
CATGATGCTTCCAACGGCAT+AGG - chr5.4:3855074-3855093 None:intergenic 50.0%
CGAATGCAGATAGGCATGCA+GGG + chr5.4:3853919-3853938 MS.gene22297:CDS 50.0%
GCATACGAAGTTGCTGAAGG+TGG + chr5.4:3854732-3854751 MS.gene22297:intron 50.0%
GCCCAGAAATCATTGCTACC+AGG + chr5.4:3855145-3855164 MS.gene22297:CDS 50.0%
GGGATTGAAGAGAGGGACAA+AGG + chr5.4:3853596-3853615 MS.gene22297:CDS 50.0%
TGTGAGGACAATGTGTGGGA+AGG + chr5.4:3852978-3852997 MS.gene22297:CDS 50.0%
! AGATCTTCTGAGGGAACAGG+TGG + chr5.4:3853456-3853475 MS.gene22297:CDS 50.0%
! CGCGGATTATTAACCGCCAT+TGG - chr5.4:3853549-3853568 None:intergenic 50.0%
! GATCTTCTGAGGGAACAGGT+GGG + chr5.4:3853457-3853476 MS.gene22297:CDS 50.0%
! GGATTGTGGCTCTTTGAGGA+TGG + chr5.4:3853776-3853795 MS.gene22297:CDS 50.0%
! TGGTGCTTTTCCTGTGCAAG+AGG + chr5.4:3853863-3853882 MS.gene22297:CDS 50.0%
! TTGGTGTCTGGTGAAGCGAT+TGG + chr5.4:3853684-3853703 MS.gene22297:CDS 50.0%
! TTTTGCTGGTGTTCCGCCTA+CGG + chr5.4:3853707-3853726 MS.gene22297:CDS 50.0%
!! CCGTTGGAAGCATCATGTGT+AGG + chr5.4:3855077-3855096 MS.gene22297:CDS 50.0%
!! TCTTGCACAGGAAAAGCACC+AGG - chr5.4:3853864-3853883 None:intergenic 50.0%
!!! GGTGAAGCGATTGGTTTTGC+TGG + chr5.4:3853693-3853712 MS.gene22297:CDS 50.0%
AGCCACAATCCCCACCATCA+GGG - chr5.4:3853767-3853786 None:intergenic 55.0%
ATCATTGCTACCAGGCACGG+AGG + chr5.4:3855153-3855172 MS.gene22297:CDS 55.0%
CAGATCATGGATTCCCGCCT+TGG + chr5.4:3855202-3855221 MS.gene22297:CDS 55.0%
CCCTCACCATTCACCGAAAC+CGG - chr5.4:3853579-3853598 None:intergenic 55.0%
CCGGTTTCGGTGAATGGTGA+GGG + chr5.4:3853576-3853595 MS.gene22297:CDS 55.0%
GAGTATGGCTGACGTGCTTG+AGG - chr5.4:3854899-3854918 None:intergenic 55.0%
GCGAATGCAGATAGGCATGC+AGG + chr5.4:3853918-3853937 MS.gene22297:CDS 55.0%
GCTTCACCAGACACCAAACG+CGG - chr5.4:3853681-3853700 None:intergenic 55.0%
GTGGGGATTGTGGCTCTTTG+AGG + chr5.4:3853772-3853791 MS.gene22297:CDS 55.0%
TGGTGTTCCGCCTACGGTTA+TGG + chr5.4:3853713-3853732 MS.gene22297:CDS 55.0%
TTCCGCCTACGGTTATGGTG+CGG + chr5.4:3853718-3853737 MS.gene22297:CDS 55.0%
TTTCGACAGCTCACCAAGGC+GGG - chr5.4:3855218-3855237 None:intergenic 55.0%
!! GGATTGCCGGTTTCGGTGAA+TGG + chr5.4:3853570-3853589 MS.gene22297:CDS 55.0%
!! TACCCTGATGGTGGGGATTG+TGG + chr5.4:3853762-3853781 MS.gene22297:CDS 55.0%
ACCAAACGCGGTCCAGCCTT+TGG - chr5.4:3853669-3853688 None:intergenic 60.0%
ACCGAAACCGGCAATCCACG+CGG - chr5.4:3853567-3853586 None:intergenic 60.0%
CACCGCACCATAACCGTAGG+CGG - chr5.4:3853723-3853742 None:intergenic 60.0%
GAGCCACAATCCCCACCATC+AGG - chr5.4:3853768-3853787 None:intergenic 60.0%
GGTCTCACTCCCTATGCCGT+TGG + chr5.4:3855061-3855080 MS.gene22297:CDS 60.0%
TCCAAAGGCTGGACCGCGTT+TGG + chr5.4:3853665-3853684 MS.gene22297:CDS 60.0%
! GCCGGTTTCGGTGAATGGTG+AGG + chr5.4:3853575-3853594 MS.gene22297:CDS 60.0%
!! TCCGCGTGGATTGCCGGTTT+CGG + chr5.4:3853563-3853582 MS.gene22297:CDS 60.0%
!! GCTGGACCGCGTTTGGTGTC+TGG + chr5.4:3853672-3853691 MS.gene22297:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 3852778 3855240 3852778 ID=MS.gene22297
chr5.4 mRNA 3852778 3855240 3852778 ID=MS.gene22297.t1;Parent=MS.gene22297
chr5.4 exon 3852778 3854019 3852778 ID=MS.gene22297.t1.exon1;Parent=MS.gene22297.t1
chr5.4 CDS 3852778 3854019 3852778 ID=cds.MS.gene22297.t1;Parent=MS.gene22297.t1
chr5.4 exon 3854863 3855240 3854863 ID=MS.gene22297.t1.exon2;Parent=MS.gene22297.t1
chr5.4 CDS 3854863 3855240 3854863 ID=cds.MS.gene22297.t1;Parent=MS.gene22297.t1
Gene Sequence

>MS.gene22297

ATGCGTGTGTTGGAATCTGATTCAATTGCATCAGTGAAAATGAGGATTCAAACACGCAAAAATGTTTCATGGAAAAAGCAAAATCTAGTTTCTAATGGAAGAGAATTATCTCGTAACAATGCGGTGATGAAAGAGTACGGTGTAACTACTGGTAATGTTGTTCATTTGGTTCTTCGTCTTTCTGATATGATTTTCATTGTTGTGAGGACAATGTGTGGGAAGGAATTTGAGTTTCAGATTGATCGGCATAGGAACGTTGCACATCTTAGGAATTGTATTAAAAGAAAGGGGAAAGGTTTTGTTGATCTTGTTGAGGAAGAACAAGAGTTTTTTTGCAGCGGCGAAAAGCTTGATGATAAGAGGATTTTTGATGATATTTGTAAGAATGATGATGATGTAATTCATCTTATTGTTAAAAAATCGGCGAAAGTTAATGCTACTTTTGTTCATAATAAGGATTTAGAGCTTTCTGTTGTTGCAGATAATTTGAATTCAAACTCGAATCAGAATTTGAATAATCAGAATCAGGATGAGGTTGTTAAGGTTATAGAACAACCCTCTGGTTTTGATTTTTTGTTAGAACCGATTTTCGTGAACCCTAGGATCAATTTTTTTCCTTTCCTATGGGATATGATAGATGCAACTTTCAATGGTTTGAAAAAAGGAAATAAACCTGTTAGATCTTCTGAGGGAACAGGTGGGACTTACTTCATGCAAGATTTCAAAGGTGTGGAGTATGTTTCTGTTTTTAAGCCAATTGATGAGGAACCAATGGCGGTTAATAATCCGCGTGGATTGCCGGTTTCGGTGAATGGTGAGGGATTGAAGAGAGGGACAAAGGTTGGAGAAGGAGCTGTGAGAGAAGTTGCGGCTTATATATTGGATCATCCAAAGGCTGGACCGCGTTTGGTGTCTGGTGAAGCGATTGGTTTTGCTGGTGTTCCGCCTACGGTTATGGTGCGGTGTTTACATGAAGCGTTTAATTACCCTGATGGTGGGGATTGTGGCTCTTTGAGGATGGATCATAAGGTGGGGTCTTTGCAGAAGTTTATGAGTAATGATGGTAATTGTGAGGATATTGGACCTGGTGCTTTTCCTGTGCAAGAGGTGCATAAGATCAGTGTGCTTGATATAAGAATGGCGAATGCAGATAGGCATGCAGGGAATATATTGTTTAGAAAAGAGTCAAATGGTGAAACTCTGCTCATTCCCATTGATCATGGTTATTGTCTTCCTGAGAAAGTAAGTCACCATTTCACATTCTTGTTTTATTTTCCTATGCAGTATTATAATGTTTTCTATGTTCTGTTTGGTGTCTACATCATTGTTATCAGTAGTTTACAATACATGCAAGTAGTATCTCAATTTGATACAAAACTGAACTCAACCGATGTCAATCCATAGTATAGATCTATTTTGGATATGAATCTCATTTTGAATCCCGATTTATTACGATGAATCTCGATTCATTCAAATGAATCATTACTTAAACTTAGTGCAGTCGGTCCTTTTTATGCTAACTTTGTATAGCCAGTCGCTTATCTTTTGTCATTTGATATATGACTTGAATATTGAATATTGAATCTACGGTCGTACAGTCTCTTTTTTACCTAAGAGATATATTTTTATTGGTAATGCATCATACGATTTATAATAATATTTGATTTACAGTATGATAACCATGTTCGTTATATTTTGGATGCAAGAATACATGTTTAATGAGAGAAGTGAGAGAGTTTCTGAACCAACTGAGATGCAGATGTCAGTTTAGACTTATATGGTATGAGAATCTATTATTTAAAAAACCAGTAGTTATTGCAAGATTTTTGTAACATATTTTCTCACTAGAGAGTTTCTTGAGAAATTCATCCAGACTACTTTTATAACTTGTTCATTTTCGAGATTCTTATACATCATTTTGCAAGGACATTGTTTACATATTTGATTAGTCCATGCATACGAAGTTGCTGAAGGTGGATCAACAAGTTATTATGAACTTAATACGTATGTCATAGGAATTCAGACATTGCGATGATACATAAAAGTCGATTAGTTTGTGAATTAATATTTTTATTCTCTCTGCAGTTTGAAGATTGCACATTTGATTGGCTTTACTGGCCTCAAGCACGTCAGCCATACTCTCCCGATACAGTTGATTACATATACTCTCTGGATGCTGAAAAGGACATAGAGCTTCTGAAATATTATGGTTGGGATGTTCCAGTTGAGAGTGCTAGAACACTCCGCATTTCCACAATGTTGTTGAAGAAAGGGGTTGAGAGAGGTCTCACTCCCTATGCCGTTGGAAGCATCATGTGTAGGGAAAATCTGAACAAAGAATCAGTGATCGAGGAGATTCTCTCTGAAGCCCAGAAATCATTGCTACCAGGCACGGAGGAATCTGATTTTCTCGAATTTGTATCGCAGATCATGGATTCCCGCCTTGGTGAGCTGTCGAAATAG

Protein sequence

>MS.gene22297.t1

MRVLESDSIASVKMRIQTRKNVSWKKQNLVSNGRELSRNNAVMKEYGVTTGNVVHLVLRLSDMIFIVVRTMCGKEFEFQIDRHRNVAHLRNCIKRKGKGFVDLVEEEQEFFCSGEKLDDKRIFDDICKNDDDVIHLIVKKSAKVNATFVHNKDLELSVVADNLNSNSNQNLNNQNQDEVVKVIEQPSGFDFLLEPIFVNPRINFFPFLWDMIDATFNGLKKGNKPVRSSEGTGGTYFMQDFKGVEYVSVFKPIDEEPMAVNNPRGLPVSVNGEGLKRGTKVGEGAVREVAAYILDHPKAGPRLVSGEAIGFAGVPPTVMVRCLHEAFNYPDGGDCGSLRMDHKVGSLQKFMSNDGNCEDIGPGAFPVQEVHKISVLDIRMANADRHAGNILFRKESNGETLLIPIDHGYCLPEKFEDCTFDWLYWPQARQPYSPDTVDYIYSLDAEKDIELLKYYGWDVPVESARTLRISTMLLKKGVERGLTPYAVGSIMCRENLNKESVIEEILSEAQKSLLPGTEESDFLEFVSQIMDSRLGELSK