Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22359.t1 | XP_003625746.1 | 96.3 | 461 | 16 | 1 | 1 | 461 | 101 | 560 | 9.30E-247 | 862.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22359.t1 | Q9LZD0 | 75.1 | 462 | 115 | 0 | 1 | 462 | 137 | 598 | 1.0e-201 | 704.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22359.t1 | G7L4Z7 | 96.3 | 461 | 16 | 1 | 1 | 461 | 101 | 560 | 6.7e-247 | 862.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051131 | MS.gene22359 | 0.813929 | 2.00E-51 | -1.69E-46 |
| MS.gene051440 | MS.gene22359 | 0.809913 | 1.50E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene22359 | 0.815846 | 7.50E-52 | -1.69E-46 |
| MS.gene052606 | MS.gene22359 | 0.810251 | 1.26E-50 | -1.69E-46 |
| MS.gene053887 | MS.gene22359 | 0.809446 | 1.88E-50 | -1.69E-46 |
| MS.gene056590 | MS.gene22359 | 0.816705 | 4.82E-52 | -1.69E-46 |
| MS.gene056591 | MS.gene22359 | 0.816123 | 6.50E-52 | -1.69E-46 |
| MS.gene056748 | MS.gene22359 | 0.815668 | 8.22E-52 | -1.69E-46 |
| MS.gene057768 | MS.gene22359 | 0.803628 | 3.18E-49 | -1.69E-46 |
| MS.gene060358 | MS.gene22359 | 0.802458 | 5.56E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22359.t1 | MTR_7g102810 | 96.537 | 462 | 13 | 2 | 1 | 461 | 101 | 560 | 0.0 | 871 |
| MS.gene22359.t1 | MTR_1g062130 | 81.579 | 456 | 83 | 1 | 1 | 455 | 121 | 576 | 0.0 | 733 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22359.t1 | AT5G03555 | 76.940 | 451 | 103 | 1 | 1 | 450 | 137 | 587 | 0.0 | 668 |
Find 99 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTCAAATTCAGAATTT+TGG | 0.140261 | 7.3:+10941609 | MS.gene22359:CDS |
| GACCAATAATTTGATCATTT+TGG | 0.164424 | 7.3:-10941721 | None:intergenic |
| ATTCAATTACTTGGTAAAAT+TGG | 0.174264 | 7.3:+10941842 | MS.gene22359:CDS |
| GTCGAGTTTGAGAAAGAAAT+TGG | 0.200651 | 7.3:+10942387 | MS.gene22359:CDS |
| AACCAACTAAGGCCCTTAAA+AGG | 0.233275 | 7.3:-10941286 | None:intergenic |
| ACTACAATCTTAGCAATTCT+TGG | 0.250622 | 7.3:+10941875 | MS.gene22359:CDS |
| TCATCAACAAAGATTATATT+TGG | 0.254971 | 7.3:+10941800 | MS.gene22359:CDS |
| GCTGGTAGCCTTGTTGATCT+TGG | 0.274985 | 7.3:+10940690 | MS.gene22359:CDS |
| AGCCAAAATGATCAAATTAT+TGG | 0.283409 | 7.3:+10941719 | MS.gene22359:CDS |
| AGTTGGTTATTCTGCATTGA+TGG | 0.294801 | 7.3:+10942084 | MS.gene22359:CDS |
| TAACTTCCTTACTCTTGATT+TGG | 0.296653 | 7.3:+10941537 | MS.gene22359:CDS |
| GTCCCTTCTTATTACCTTGC+TGG | 0.309994 | 7.3:+10940672 | MS.gene22359:CDS |
| TCTGCATTGATGGGTCCTAT+TGG | 0.319696 | 7.3:+10942094 | MS.gene22359:CDS |
| GGTTGGAAATGGCTAGCCTT+TGG | 0.321023 | 7.3:+10940631 | None:intergenic |
| GCTATACTAACAGCATTTCT+TGG | 0.321556 | 7.3:+10942001 | MS.gene22359:CDS |
| GTTCTTGCTAGATCATCTTT+TGG | 0.325016 | 7.3:+10941239 | MS.gene22359:CDS |
| TTCTGAATTTGAGAGTTTAG+AGG | 0.335043 | 7.3:-10941603 | None:intergenic |
| CTGGTAGCCTTGTTGATCTT+GGG | 0.344293 | 7.3:+10940691 | MS.gene22359:CDS |
| TACAACATTGGCAGCAATAT+TGG | 0.344747 | 7.3:-10941921 | None:intergenic |
| GTTGGAAATGGCTAGCCTTT+GGG | 0.357707 | 7.3:+10940632 | None:intergenic |
| TTTGTATATACTTGGCTAGT+TGG | 0.361674 | 7.3:+10942067 | MS.gene22359:CDS |
| CTGGATGACCAGTGAGGATC+AGG | 0.366293 | 7.3:-10940773 | None:intergenic |
| GGAATCTTACCTGTGATTCC+TGG | 0.367449 | 7.3:+10942253 | MS.gene22359:CDS |
| TCCAACCCAATTCAATTACT+TGG | 0.380360 | 7.3:+10941833 | MS.gene22359:CDS |
| ATGGGAGCATTCACATTTGT+TGG | 0.386369 | 7.3:+10941764 | MS.gene22359:CDS |
| TGAGGATCAGGGGAACAAAA+AGG | 0.397284 | 7.3:-10940761 | None:intergenic |
| TGGTTCAATTATCAATTGTA+TGG | 0.399554 | 7.3:+10941456 | MS.gene22359:CDS |
| TTGTATTCAAGAAATCCTTA+TGG | 0.412377 | 7.3:+10942175 | MS.gene22359:CDS |
| TTTGTTCCCCTGATCCTCAC+TGG | 0.419591 | 7.3:+10940765 | MS.gene22359:CDS |
| TTAGCATATCTTGTAAAATC+AGG | 0.436745 | 7.3:-10941695 | None:intergenic |
| AAAGATGATCTAGCAAGAAC+TGG | 0.436885 | 7.3:-10941236 | None:intergenic |
| CTGATCCTCACTGGTCATCC+AGG | 0.436907 | 7.3:+10940774 | MS.gene22359:CDS |
| TTAAGGGCCTTAGTTGGTTG+TGG | 0.442410 | 7.3:+10941290 | MS.gene22359:CDS |
| CTTGGGATGGCTTGGTGGCA+AGG | 0.444795 | 7.3:+10940708 | MS.gene22359:CDS |
| TTAGTTGGTTGTGGTTGGTA+TGG | 0.445293 | 7.3:+10941299 | MS.gene22359:CDS |
| AGATTTACAAGAGCATTTGC+TGG | 0.445420 | 7.3:-10941947 | None:intergenic |
| TTGATCTTGGGATGGCTTGG+TGG | 0.445592 | 7.3:+10940703 | MS.gene22359:CDS |
| AAGAAAACTAATTTAAGCAT+TGG | 0.446596 | 7.3:+10942148 | MS.gene22359:CDS |
| TTGGAATTGCATTTCAACCT+TGG | 0.447354 | 7.3:+10942020 | MS.gene22359:CDS |
| TTGTTGATCTTGGGATGGCT+TGG | 0.450021 | 7.3:+10940700 | MS.gene22359:CDS |
| ACCAAGTAATTGAATTGGGT+TGG | 0.450613 | 7.3:-10941834 | None:intergenic |
| ATTTGGTCTTATGTTAAAGC+TGG | 0.451995 | 7.3:+10941554 | MS.gene22359:CDS |
| GTGAGAGCTTTGTATATACT+TGG | 0.452917 | 7.3:+10942059 | MS.gene22359:CDS |
| ACTAGAATAATTCCTCCAAT+AGG | 0.453650 | 7.3:-10942109 | None:intergenic |
| CAATTACTTGGTAAAATTGG+TGG | 0.458315 | 7.3:+10941845 | MS.gene22359:CDS |
| GTTACTGCAGGTACGCGTTA+TGG | 0.459237 | 7.3:+10941203 | MS.gene22359:intron |
| GTTGGTTATTCTGCATTGAT+GGG | 0.467875 | 7.3:+10942085 | MS.gene22359:CDS |
| CTTTGGGTAGGACTTGTTGT+GGG | 0.470770 | 7.3:+10940648 | MS.gene22359:CDS |
| GAAGTTAGTAGAATGAGTAT+TGG | 0.472811 | 7.3:-10941521 | None:intergenic |
| TTATTGAATTTGGCAAAAGA+AGG | 0.472834 | 7.3:-10941355 | None:intergenic |
| ATACCAACCACAACCAACTA+AGG | 0.481785 | 7.3:-10941297 | None:intergenic |
| ATAAGACCAAATCAAGAGTA+AGG | 0.483219 | 7.3:-10941543 | None:intergenic |
| ATTGTATGGAAAGGAATTGA+AGG | 0.487515 | 7.3:+10941470 | MS.gene22359:CDS |
| TGGTGCTTACTATTACACTA+AGG | 0.487683 | 7.3:+10942195 | MS.gene22359:CDS |
| GGGCCTTAGTTGGTTGTGGT+TGG | 0.491408 | 7.3:+10941294 | MS.gene22359:CDS |
| GATCAAATTATTGGTCAAGC+TGG | 0.492344 | 7.3:+10941728 | MS.gene22359:CDS |
| ATTTGCTGGTGCTACAACAT+TGG | 0.496199 | 7.3:-10941933 | None:intergenic |
| GCATTGATGGGTCCTATTGG+AGG | 0.498548 | 7.3:+10942097 | MS.gene22359:CDS |
| ATTTAATGTGGCAGCAATTG+TGG | 0.499090 | 7.3:+10942219 | MS.gene22359:CDS |
| TGGTCTTATGTTAAAGCTGG+TGG | 0.500887 | 7.3:+10941557 | MS.gene22359:CDS |
| TAGTGGGGAAGTACCAAGCC+AGG | 0.504355 | 7.3:-10941405 | None:intergenic |
| CTTGACTTAAGAAGCTTCCA+AGG | 0.512122 | 7.3:-10942037 | None:intergenic |
| TATTGGTTGTAATTGTAGCT+AGG | 0.512701 | 7.3:-10941904 | None:intergenic |
| CTTATATTAGCAGTTAGAGA+AGG | 0.514112 | 7.3:-10941644 | None:intergenic |
| TAGCCTTGTTGATCTTGGGA+TGG | 0.514134 | 7.3:+10940695 | MS.gene22359:CDS |
| ACCAACTAAGGCCCTTAAAA+GGG | 0.516958 | 7.3:-10941285 | None:intergenic |
| GTGTAATAGTAAGCACCATA+AGG | 0.524596 | 7.3:-10942190 | None:intergenic |
| CTTCTAAAATTGAACCACAT+TGG | 0.525736 | 7.3:-10941974 | None:intergenic |
| CCTTTGGGTAGGACTTGTTG+TGG | 0.527885 | 7.3:+10940647 | MS.gene22359:CDS |
| CAATTATCAATTGTATGGAA+AGG | 0.537279 | 7.3:+10941461 | MS.gene22359:CDS |
| TCAAAATCTCTACCCTGGCT+TGG | 0.540803 | 7.3:+10941392 | MS.gene22359:CDS |
| TATTGGAGGAATTATTCTAG+TGG | 0.543604 | 7.3:+10942111 | MS.gene22359:CDS |
| GGTGCTTACTATTACACTAA+GGG | 0.551755 | 7.3:+10942196 | MS.gene22359:CDS |
| GCAATTGTGGCTCTAGTCGT+TGG | 0.552932 | 7.3:+10942232 | MS.gene22359:CDS |
| TTGTTGTCTATAATAATGCT+TGG | 0.552958 | 7.3:+10942323 | MS.gene22359:CDS |
| TTATATTAGCAGTTAGAGAA+GGG | 0.553068 | 7.3:-10941643 | None:intergenic |
| TTGTATGGAAAGGAATTGAA+GGG | 0.565766 | 7.3:+10941471 | MS.gene22359:CDS |
| CTACCAGCAAGGTAATAAGA+AGG | 0.566875 | 7.3:-10940675 | None:intergenic |
| GGAATTGAAACATGGATTGG+TGG | 0.572647 | 7.3:+10941320 | MS.gene22359:CDS |
| AACTAAGGCCCTTAAAAGGG+TGG | 0.577930 | 7.3:-10941282 | None:intergenic |
| TATGGAATTGAAACATGGAT+TGG | 0.583446 | 7.3:+10941317 | MS.gene22359:CDS |
| TGATAATTGAACCACCATGA+AGG | 0.589905 | 7.3:-10941447 | None:intergenic |
| TGGATGACCAGTGAGGATCA+GGG | 0.593195 | 7.3:-10940772 | None:intergenic |
| TTGGTGGCAAGGCATAGCTA+CGG | 0.602844 | 7.3:+10940719 | MS.gene22359:CDS |
| GATCAACAAGGCTACCAGCA+AGG | 0.609165 | 7.3:-10940686 | None:intergenic |
| TTACACTAAGGGATTTAATG+TGG | 0.614787 | 7.3:+10942207 | MS.gene22359:CDS |
| TACCAGCAAGGTAATAAGAA+GGG | 0.615006 | 7.3:-10940674 | None:intergenic |
| ACTAAGGCCCTTAAAAGGGT+GGG | 0.621679 | 7.3:-10941281 | None:intergenic |
| TTGTAAATCTTAGTCCAATG+TGG | 0.629164 | 7.3:+10941960 | MS.gene22359:CDS |
| CATTGTCAAAATCTCTACCC+TGG | 0.639318 | 7.3:+10941387 | MS.gene22359:CDS |
| GTTGGTATGGAATTGAAACA+TGG | 0.642108 | 7.3:+10941312 | MS.gene22359:CDS |
| GAAATGGCTAGCCTTTGGGT+AGG | 0.643060 | 7.3:+10940636 | None:intergenic |
| GTGGCAAGGCATAGCTACGG+TGG | 0.646889 | 7.3:+10940722 | MS.gene22359:CDS |
| GGATGACCAGTGAGGATCAG+GGG | 0.653817 | 7.3:-10940771 | None:intergenic |
| CCACAACAAGTCCTACCCAA+AGG | 0.682442 | 7.3:-10940647 | None:intergenic |
| TTGCTTCTTAGCCTTCATGG+TGG | 0.688573 | 7.3:+10941436 | MS.gene22359:CDS |
| AGTGGGGAAGTACCAAGCCA+GGG | 0.691492 | 7.3:-10941404 | None:intergenic |
| AAGCCATCCCAAGATCAACA+AGG | 0.710232 | 7.3:-10940698 | None:intergenic |
| TTATACCTGGATGACCAGTG+AGG | 0.765872 | 7.3:-10940779 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATGGTTCATTATATATT+TGG | + | chr7.3:10941120-10941139 | MS.gene22359:intron | 15.0% |
| !! | AAGAAAACTAATTTAAGCAT+TGG | + | chr7.3:10942148-10942167 | MS.gene22359:CDS | 20.0% |
| !! | ATTCAATTACTTGGTAAAAT+TGG | + | chr7.3:10941842-10941861 | MS.gene22359:CDS | 20.0% |
| !! | TACTCATATATAATTTCAAG+TGG | - | chr7.3:10941150-10941169 | None:intergenic | 20.0% |
| !! | TATAATGAACCATATATGTT+TGG | - | chr7.3:10941116-10941135 | None:intergenic | 20.0% |
| !! | TCATCAACAAAGATTATATT+TGG | + | chr7.3:10941800-10941819 | MS.gene22359:CDS | 20.0% |
| !!! | AACTGCTAATATAAGTTTTT+GGG | + | chr7.3:10941652-10941671 | MS.gene22359:CDS | 20.0% |
| !!! | ATTTTACCAAGTAATTGAAT+TGG | - | chr7.3:10941842-10941861 | None:intergenic | 20.0% |
| !!! | GTACTTTGTTTTATTGAATT+TGG | - | chr7.3:10941368-10941387 | None:intergenic | 20.0% |
| !!! | TAACTGCTAATATAAGTTTT+TGG | + | chr7.3:10941651-10941670 | MS.gene22359:CDS | 20.0% |
| !!! | TTTTACCAAGTAATTGAATT+GGG | - | chr7.3:10941841-10941860 | None:intergenic | 20.0% |
| ! | AAGAAGCAAAAAAATTCTAG+TGG | - | chr7.3:10941425-10941444 | None:intergenic | 25.0% |
| ! | AGAAGCAAAAAAATTCTAGT+GGG | - | chr7.3:10941424-10941443 | None:intergenic | 25.0% |
| ! | AGCCAAAATGATCAAATTAT+TGG | + | chr7.3:10941719-10941738 | MS.gene22359:CDS | 25.0% |
| ! | ATAGAATAGAAGGATATCAT+AGG | + | chr7.3:10940994-10941013 | MS.gene22359:intron | 25.0% |
| ! | CAATTATCAATTGTATGGAA+AGG | + | chr7.3:10941461-10941480 | MS.gene22359:CDS | 25.0% |
| ! | TGGTTCAATTATCAATTGTA+TGG | + | chr7.3:10941456-10941475 | MS.gene22359:CDS | 25.0% |
| ! | TTAGCATATCTTGTAAAATC+AGG | - | chr7.3:10941698-10941717 | None:intergenic | 25.0% |
| ! | TTATATTAGCAGTTAGAGAA+GGG | - | chr7.3:10941646-10941665 | None:intergenic | 25.0% |
| ! | TTATTGAATTTGGCAAAAGA+AGG | - | chr7.3:10941358-10941377 | None:intergenic | 25.0% |
| ! | TTGTATTCAAGAAATCCTTA+TGG | + | chr7.3:10942175-10942194 | MS.gene22359:CDS | 25.0% |
| ! | TTGTTGTCTATAATAATGCT+TGG | + | chr7.3:10942323-10942342 | MS.gene22359:CDS | 25.0% |
| !! | AACTCTCAAATTCAGAATTT+TGG | + | chr7.3:10941609-10941628 | MS.gene22359:CDS | 25.0% |
| !! | GACCAATAATTTGATCATTT+TGG | - | chr7.3:10941724-10941743 | None:intergenic | 25.0% |
| ACTACAATCTTAGCAATTCT+TGG | + | chr7.3:10941875-10941894 | MS.gene22359:CDS | 30.0% | |
| ACTAGAATAATTCCTCCAAT+AGG | - | chr7.3:10942112-10942131 | None:intergenic | 30.0% | |
| ATAAGACCAAATCAAGAGTA+AGG | - | chr7.3:10941546-10941565 | None:intergenic | 30.0% | |
| ATAGATTCCTAACTATGTCT+TGG | + | chr7.3:10940875-10940894 | MS.gene22359:intron | 30.0% | |
| ATTGTATGGAAAGGAATTGA+AGG | + | chr7.3:10941470-10941489 | MS.gene22359:CDS | 30.0% | |
| CAATTACTTGGTAAAATTGG+TGG | + | chr7.3:10941845-10941864 | MS.gene22359:CDS | 30.0% | |
| CACAAAGTTAAGTGATTAGA+TGG | + | chr7.3:10940966-10940985 | MS.gene22359:intron | 30.0% | |
| CTTATATTAGCAGTTAGAGA+AGG | - | chr7.3:10941647-10941666 | None:intergenic | 30.0% | |
| GAAGCAAAAAAATTCTAGTG+GGG | - | chr7.3:10941423-10941442 | None:intergenic | 30.0% | |
| GAAGTTAGTAGAATGAGTAT+TGG | - | chr7.3:10941524-10941543 | None:intergenic | 30.0% | |
| GATGGTAAACATAGAATAGA+AGG | + | chr7.3:10940984-10941003 | MS.gene22359:intron | 30.0% | |
| TAACTTCCTTACTCTTGATT+TGG | + | chr7.3:10941537-10941556 | MS.gene22359:CDS | 30.0% | |
| TATGGAATTGAAACATGGAT+TGG | + | chr7.3:10941317-10941336 | MS.gene22359:CDS | 30.0% | |
| TATTAGCTGCCAAACATATA+TGG | + | chr7.3:10941104-10941123 | MS.gene22359:intron | 30.0% | |
| TATTGGAGGAATTATTCTAG+TGG | + | chr7.3:10942111-10942130 | MS.gene22359:CDS | 30.0% | |
| TCAAAAACCAAGACATAGTT+AGG | - | chr7.3:10940885-10940904 | None:intergenic | 30.0% | |
| TGAGAAAGATCAAAATCAGT+GGG | - | chr7.3:10940851-10940870 | None:intergenic | 30.0% | |
| TTACACTAAGGGATTTAATG+TGG | + | chr7.3:10942207-10942226 | MS.gene22359:CDS | 30.0% | |
| TTCTGAATTTGAGAGTTTAG+AGG | - | chr7.3:10941606-10941625 | None:intergenic | 30.0% | |
| TTGAGAAAGATCAAAATCAG+TGG | - | chr7.3:10940852-10940871 | None:intergenic | 30.0% | |
| TTGTAAATCTTAGTCCAATG+TGG | + | chr7.3:10941960-10941979 | MS.gene22359:CDS | 30.0% | |
| TTGTATGGAAAGGAATTGAA+GGG | + | chr7.3:10941471-10941490 | MS.gene22359:CDS | 30.0% | |
| TTTGTATATACTTGGCTAGT+TGG | + | chr7.3:10942067-10942086 | MS.gene22359:CDS | 30.0% | |
| ! | TATGCTATTTGCAAGTTCAA+AGG | + | chr7.3:10940926-10940945 | MS.gene22359:intron | 30.0% |
| ! | TATTGGTTGTAATTGTAGCT+AGG | - | chr7.3:10941907-10941926 | None:intergenic | 30.0% |
| !! | ATGTGGTTCAATTTTAGAAG+AGG | + | chr7.3:10941977-10941996 | MS.gene22359:CDS | 30.0% |
| !! | ATTTGGTCTTATGTTAAAGC+TGG | + | chr7.3:10941554-10941573 | MS.gene22359:CDS | 30.0% |
| !! | CTTCTAAAATTGAACCACAT+TGG | - | chr7.3:10941977-10941996 | None:intergenic | 30.0% |
| !! | TTTCTGCAGCATTGTTTTAT+TGG | + | chr7.3:10942359-10942378 | MS.gene22359:CDS | 30.0% |
| AAAGATGATCTAGCAAGAAC+TGG | - | chr7.3:10941239-10941258 | None:intergenic | 35.0% | |
| ACCAAGTAATTGAATTGGGT+TGG | - | chr7.3:10941837-10941856 | None:intergenic | 35.0% | |
| AGTTGGTTATTCTGCATTGA+TGG | + | chr7.3:10942084-10942103 | MS.gene22359:CDS | 35.0% | |
| ATTTAATGTGGCAGCAATTG+TGG | + | chr7.3:10942219-10942238 | MS.gene22359:CDS | 35.0% | |
| CCAACTTTATGCAAAAAACC+AGG | - | chr7.3:10942274-10942293 | None:intergenic | 35.0% | |
| GATCAAATTATTGGTCAAGC+TGG | + | chr7.3:10941728-10941747 | MS.gene22359:CDS | 35.0% | |
| GCTATACTAACAGCATTTCT+TGG | + | chr7.3:10942001-10942020 | MS.gene22359:CDS | 35.0% | |
| GGGAACAAAAAGGATAATGT+TGG | - | chr7.3:10940754-10940773 | None:intergenic | 35.0% | |
| GGTGCTTACTATTACACTAA+GGG | + | chr7.3:10942196-10942215 | MS.gene22359:CDS | 35.0% | |
| GTCGAGTTTGAGAAAGAAAT+TGG | + | chr7.3:10942387-10942406 | MS.gene22359:CDS | 35.0% | |
| GTGAATGCTCCCATAAAAAT+AGG | - | chr7.3:10941758-10941777 | None:intergenic | 35.0% | |
| GTGTAATAGTAAGCACCATA+AGG | - | chr7.3:10942193-10942212 | None:intergenic | 35.0% | |
| GTTGGTATGGAATTGAAACA+TGG | + | chr7.3:10941312-10941331 | MS.gene22359:CDS | 35.0% | |
| TACAACATTGGCAGCAATAT+TGG | - | chr7.3:10941924-10941943 | None:intergenic | 35.0% | |
| TACCAGCAAGGTAATAAGAA+GGG | - | chr7.3:10940677-10940696 | None:intergenic | 35.0% | |
| TCCAACCCAATTCAATTACT+TGG | + | chr7.3:10941833-10941852 | MS.gene22359:CDS | 35.0% | |
| TGATAATTGAACCACCATGA+AGG | - | chr7.3:10941450-10941469 | None:intergenic | 35.0% | |
| TGGTGCTTACTATTACACTA+AGG | + | chr7.3:10942195-10942214 | MS.gene22359:CDS | 35.0% | |
| TTGGAATTGCATTTCAACCT+TGG | + | chr7.3:10942020-10942039 | MS.gene22359:CDS | 35.0% | |
| ! | AGATCATCTTTTGGCATTCA+TGG | + | chr7.3:10941248-10941267 | MS.gene22359:CDS | 35.0% |
| ! | GTGAGAGCTTTGTATATACT+TGG | + | chr7.3:10942059-10942078 | MS.gene22359:CDS | 35.0% |
| ! | GTTCTTGCTAGATCATCTTT+TGG | + | chr7.3:10941239-10941258 | MS.gene22359:CDS | 35.0% |
| ! | GTTGGTTATTCTGCATTGAT+GGG | + | chr7.3:10942085-10942104 | MS.gene22359:CDS | 35.0% |
| ! | TCATATTCCCACCCTTTTAA+GGG | + | chr7.3:10941274-10941293 | MS.gene22359:CDS | 35.0% |
| !! | AGATTTACAAGAGCATTTGC+TGG | - | chr7.3:10941950-10941969 | None:intergenic | 35.0% |
| !! | TTTTTGCTTCTTAGCCTTCA+TGG | + | chr7.3:10941433-10941452 | MS.gene22359:CDS | 35.0% |
| !!! | AGCTGGTCTTCCTATTTTTA+TGG | + | chr7.3:10941745-10941764 | MS.gene22359:CDS | 35.0% |
| !!! | CCTGGTTTTTTGCATAAAGT+TGG | + | chr7.3:10942271-10942290 | MS.gene22359:CDS | 35.0% |
| !!! | GCTGGTCTTCCTATTTTTAT+GGG | + | chr7.3:10941746-10941765 | MS.gene22359:CDS | 35.0% |
| AACCAACTAAGGCCCTTAAA+AGG | - | chr7.3:10941289-10941308 | None:intergenic | 40.0% | |
| ACCAACTAAGGCCCTTAAAA+GGG | - | chr7.3:10941288-10941307 | None:intergenic | 40.0% | |
| ACTGGTCATCCAGGTATAAA+GGG | + | chr7.3:10940783-10940802 | MS.gene22359:intron | 40.0% | |
| ATACCAACCACAACCAACTA+AGG | - | chr7.3:10941300-10941319 | None:intergenic | 40.0% | |
| CATTGTCAAAATCTCTACCC+TGG | + | chr7.3:10941387-10941406 | MS.gene22359:CDS | 40.0% | |
| CGTCGTCAACTTAAAATCTC+TGG | + | chr7.3:10941176-10941195 | MS.gene22359:intron | 40.0% | |
| CTACCAGCAAGGTAATAAGA+AGG | - | chr7.3:10940678-10940697 | None:intergenic | 40.0% | |
| CTTGACTTAAGAAGCTTCCA+AGG | - | chr7.3:10942040-10942059 | None:intergenic | 40.0% | |
| TGCAAAAAACCAGGAATCAC+AGG | - | chr7.3:10942265-10942284 | None:intergenic | 40.0% | |
| TTGATCCATCCCTTTATACC+TGG | - | chr7.3:10940795-10940814 | None:intergenic | 40.0% | |
| ! | CTCATATTCCCACCCTTTTA+AGG | + | chr7.3:10941273-10941292 | MS.gene22359:CDS | 40.0% |
| ! | TTAGTTGGTTGTGGTTGGTA+TGG | + | chr7.3:10941299-10941318 | MS.gene22359:CDS | 40.0% |
| !! | ATGGGAGCATTCACATTTGT+TGG | + | chr7.3:10941764-10941783 | MS.gene22359:CDS | 40.0% |
| !! | ATTTGCTGGTGCTACAACAT+TGG | - | chr7.3:10941936-10941955 | None:intergenic | 40.0% |
| !! | GGAATTGAAACATGGATTGG+TGG | + | chr7.3:10941320-10941339 | MS.gene22359:CDS | 40.0% |
| !! | TGGTCTTATGTTAAAGCTGG+TGG | + | chr7.3:10941557-10941576 | MS.gene22359:CDS | 40.0% |
| AACTAAGGCCCTTAAAAGGG+TGG | - | chr7.3:10941285-10941304 | None:intergenic | 45.0% | |
| AAGCCATCCCAAGATCAACA+AGG | - | chr7.3:10940701-10940720 | None:intergenic | 45.0% | |
| ACTAAGGCCCTTAAAAGGGT+GGG | - | chr7.3:10941284-10941303 | None:intergenic | 45.0% | |
| ATAACGCGTACCTGCAGTAA+CGG | - | chr7.3:10941204-10941223 | None:intergenic | 45.0% | |
| CACTGGTCATCCAGGTATAA+AGG | + | chr7.3:10940782-10940801 | MS.gene22359:intron | 45.0% | |
| GGAATCTTACCTGTGATTCC+TGG | + | chr7.3:10942253-10942272 | MS.gene22359:CDS | 45.0% | |
| GTCATCCAGGTATAAAGGGA+TGG | + | chr7.3:10940787-10940806 | MS.gene22359:intron | 45.0% | |
| GTCCCTTCTTATTACCTTGC+TGG | + | chr7.3:10940672-10940691 | MS.gene22359:CDS | 45.0% | |
| TCAAAATCTCTACCCTGGCT+TGG | + | chr7.3:10941392-10941411 | MS.gene22359:CDS | 45.0% | |
| TGAGGATCAGGGGAACAAAA+AGG | - | chr7.3:10940764-10940783 | None:intergenic | 45.0% | |
| TTAAGGGCCTTAGTTGGTTG+TGG | + | chr7.3:10941290-10941309 | MS.gene22359:CDS | 45.0% | |
| TTATACCTGGATGACCAGTG+AGG | - | chr7.3:10940782-10940801 | None:intergenic | 45.0% | |
| TTGTTGATCTTGGGATGGCT+TGG | + | chr7.3:10940700-10940719 | MS.gene22359:CDS | 45.0% | |
| ! | TCTGCATTGATGGGTCCTAT+TGG | + | chr7.3:10942094-10942113 | MS.gene22359:CDS | 45.0% |
| ! | TTGCTTCTTAGCCTTCATGG+TGG | + | chr7.3:10941436-10941455 | MS.gene22359:CDS | 45.0% |
| !! | ACCCTTTTAAGGGCCTTAGT+TGG | + | chr7.3:10941284-10941303 | MS.gene22359:CDS | 45.0% |
| !! | CTGGTAGCCTTGTTGATCTT+GGG | + | chr7.3:10940691-10940710 | MS.gene22359:CDS | 45.0% |
| !! | CTTTGGGTAGGACTTGTTGT+GGG | + | chr7.3:10940648-10940667 | MS.gene22359:CDS | 45.0% |
| !! | TAGCCTTGTTGATCTTGGGA+TGG | + | chr7.3:10940695-10940714 | MS.gene22359:CDS | 45.0% |
| ATCTCTGGATCCGTTACTGC+AGG | + | chr7.3:10941191-10941210 | MS.gene22359:intron | 50.0% | |
| CCACAACAAGTCCTACCCAA+AGG | - | chr7.3:10940650-10940669 | None:intergenic | 50.0% | |
| GATCAACAAGGCTACCAGCA+AGG | - | chr7.3:10940689-10940708 | None:intergenic | 50.0% | |
| GTTACTGCAGGTACGCGTTA+TGG | + | chr7.3:10941203-10941222 | MS.gene22359:intron | 50.0% | |
| TGGATGACCAGTGAGGATCA+GGG | - | chr7.3:10940775-10940794 | None:intergenic | 50.0% | |
| TTTGTTCCCCTGATCCTCAC+TGG | + | chr7.3:10940765-10940784 | MS.gene22359:CDS | 50.0% | |
| ! | GCATTGATGGGTCCTATTGG+AGG | + | chr7.3:10942097-10942116 | MS.gene22359:CDS | 50.0% |
| ! | TTGATCTTGGGATGGCTTGG+TGG | + | chr7.3:10940703-10940722 | MS.gene22359:CDS | 50.0% |
| ! | TTGGTGGCAAGGCATAGCTA+CGG | + | chr7.3:10940719-10940738 | MS.gene22359:CDS | 50.0% |
| !! | CCTTTGGGTAGGACTTGTTG+TGG | + | chr7.3:10940647-10940666 | MS.gene22359:CDS | 50.0% |
| !! | GCAATTGTGGCTCTAGTCGT+TGG | + | chr7.3:10942232-10942251 | MS.gene22359:CDS | 50.0% |
| !! | GCTGGTAGCCTTGTTGATCT+TGG | + | chr7.3:10940690-10940709 | MS.gene22359:CDS | 50.0% |
| CTGATCCTCACTGGTCATCC+AGG | + | chr7.3:10940774-10940793 | MS.gene22359:CDS | 55.0% | |
| CTGGATGACCAGTGAGGATC+AGG | - | chr7.3:10940776-10940795 | None:intergenic | 55.0% | |
| GGATGACCAGTGAGGATCAG+GGG | - | chr7.3:10940774-10940793 | None:intergenic | 55.0% | |
| GGGCCTTAGTTGGTTGTGGT+TGG | + | chr7.3:10941294-10941313 | MS.gene22359:CDS | 55.0% | |
| !! | AGTGGGGAAGTACCAAGCCA+GGG | - | chr7.3:10941407-10941426 | None:intergenic | 55.0% |
| !! | TAGTGGGGAAGTACCAAGCC+AGG | - | chr7.3:10941408-10941427 | None:intergenic | 55.0% |
| GTGGCAAGGCATAGCTACGG+TGG | + | chr7.3:10940722-10940741 | MS.gene22359:CDS | 60.0% | |
| !! | CTTGGGATGGCTTGGTGGCA+AGG | + | chr7.3:10940708-10940727 | MS.gene22359:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 10940639 | 10942456 | 10940639 | ID=MS.gene22359 |
| chr7.3 | mRNA | 10940639 | 10942456 | 10940639 | ID=MS.gene22359.t1;Parent=MS.gene22359 |
| chr7.3 | exon | 10940639 | 10940795 | 10940639 | ID=MS.gene22359.t1.exon1;Parent=MS.gene22359.t1 |
| chr7.3 | CDS | 10940639 | 10940795 | 10940639 | ID=cds.MS.gene22359.t1;Parent=MS.gene22359.t1 |
| chr7.3 | exon | 10941213 | 10942456 | 10941213 | ID=MS.gene22359.t1.exon2;Parent=MS.gene22359.t1 |
| chr7.3 | CDS | 10941213 | 10942456 | 10941213 | ID=cds.MS.gene22359.t1;Parent=MS.gene22359.t1 |
| Gene Sequence |
| Protein sequence |
