Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22697.t1 | XP_013450601.1 | 97.5 | 408 | 10 | 0 | 1 | 408 | 1 | 408 | 9.70E-232 | 812.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22697.t1 | Q9M363 | 51.1 | 364 | 169 | 6 | 37 | 394 | 32 | 392 | 7.8e-105 | 382.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22697.t1 | A0A072U4F8 | 97.5 | 408 | 10 | 0 | 1 | 408 | 1 | 408 | 7.0e-232 | 812.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050649 | MS.gene22697 | 0.98429 | 3.92E-160 | -1.69E-46 |
| MS.gene054805 | MS.gene22697 | 0.806423 | 8.29E-50 | -1.69E-46 |
| MS.gene058206 | MS.gene22697 | 0.834193 | 3.45E-56 | -1.69E-46 |
| MS.gene060317 | MS.gene22697 | 0.850316 | 1.84E-60 | -1.69E-46 |
| MS.gene060652 | MS.gene22697 | 0.805567 | 1.25E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22697.t1 | MTR_7g117375 | 97.549 | 408 | 10 | 0 | 1 | 408 | 1 | 408 | 0.0 | 823 |
| MS.gene22697.t1 | MTR_8g028075 | 35.312 | 337 | 206 | 6 | 44 | 374 | 220 | 550 | 6.83e-70 | 230 |
| MS.gene22697.t1 | MTR_8g028075 | 32.164 | 171 | 109 | 5 | 39 | 203 | 23 | 192 | 2.42e-17 | 84.3 |
| MS.gene22697.t1 | MTR_4g133620 | 28.571 | 308 | 187 | 10 | 101 | 385 | 87 | 384 | 1.68e-31 | 124 |
| MS.gene22697.t1 | MTR_5g093520 | 28.354 | 328 | 203 | 9 | 77 | 379 | 67 | 387 | 3.38e-31 | 123 |
| MS.gene22697.t1 | MTR_7g051910 | 30.435 | 345 | 203 | 15 | 65 | 385 | 43 | 374 | 1.12e-30 | 121 |
| MS.gene22697.t1 | MTR_8g009880 | 29.938 | 324 | 189 | 14 | 92 | 386 | 69 | 383 | 5.63e-29 | 117 |
| MS.gene22697.t1 | MTR_2g026080 | 29.470 | 302 | 183 | 10 | 104 | 384 | 94 | 386 | 7.16e-29 | 117 |
| MS.gene22697.t1 | MTR_5g097620 | 35.593 | 177 | 106 | 4 | 218 | 386 | 247 | 423 | 8.76e-27 | 111 |
| MS.gene22697.t1 | MTR_3g058510 | 26.316 | 285 | 197 | 6 | 104 | 378 | 87 | 368 | 6.41e-25 | 105 |
| MS.gene22697.t1 | MTR_8g028070 | 35.260 | 173 | 105 | 5 | 37 | 203 | 23 | 194 | 1.36e-23 | 99.4 |
| MS.gene22697.t1 | MTR_2g018960 | 24.629 | 337 | 216 | 9 | 74 | 384 | 518 | 842 | 4.93e-21 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22697.t1 | AT3G61750 | 52.770 | 343 | 155 | 5 | 37 | 375 | 32 | 371 | 1.48e-129 | 379 |
| MS.gene22697.t1 | AT3G61750 | 54.392 | 296 | 130 | 3 | 82 | 375 | 2 | 294 | 8.20e-115 | 338 |
| MS.gene22697.t1 | AT3G07570 | 35.519 | 366 | 218 | 9 | 26 | 380 | 11 | 369 | 1.26e-68 | 221 |
| MS.gene22697.t1 | AT5G47530 | 28.521 | 284 | 181 | 8 | 104 | 373 | 88 | 363 | 3.72e-31 | 123 |
| MS.gene22697.t1 | AT4G12980 | 35.556 | 180 | 109 | 3 | 216 | 388 | 212 | 391 | 8.07e-31 | 122 |
| MS.gene22697.t1 | AT3G25290 | 34.359 | 195 | 119 | 4 | 201 | 388 | 198 | 390 | 1.39e-30 | 121 |
| MS.gene22697.t1 | AT3G25290 | 34.359 | 195 | 119 | 4 | 201 | 388 | 198 | 390 | 1.39e-30 | 121 |
| MS.gene22697.t1 | AT5G35735 | 25.581 | 344 | 223 | 11 | 74 | 398 | 57 | 386 | 2.18e-27 | 112 |
| MS.gene22697.t1 | AT3G59070 | 30.667 | 225 | 140 | 5 | 187 | 397 | 183 | 405 | 2.44e-25 | 107 |
| MS.gene22697.t1 | AT4G17280 | 27.113 | 284 | 187 | 6 | 104 | 375 | 95 | 370 | 3.13e-25 | 106 |
| MS.gene22697.t1 | AT2G04850 | 26.398 | 322 | 197 | 12 | 92 | 383 | 71 | 382 | 1.52e-20 | 93.2 |
| MS.gene22697.t1 | AT5G54830 | 23.653 | 334 | 205 | 12 | 78 | 379 | 534 | 849 | 2.27e-13 | 72.4 |
Find 105 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGGGGCTGAAATTTATT+TGG | 0.168870 | 7.4:+1102345 | MS.gene22697:CDS |
| AGAGGATCCATTTGGAAATT+TGG | 0.184762 | 7.4:-1103917 | None:intergenic |
| GTACTAAAAGCCAATAAAAT+TGG | 0.228379 | 7.4:-1102406 | None:intergenic |
| CGAAACTTGGAATCCCTATT+TGG | 0.245262 | 7.4:-1103689 | None:intergenic |
| AGAAAGAATCATGGAATAAT+TGG | 0.246187 | 7.4:+1103217 | MS.gene22697:CDS |
| AGTTATCGTTCTCGAAATAT+TGG | 0.252993 | 7.4:+1103859 | MS.gene22697:CDS |
| TGCAGCCTTGAACATAGTTT+TGG | 0.253562 | 7.4:+1103763 | MS.gene22697:CDS |
| CATTCTTCTTGAGACCAAAT+AGG | 0.267115 | 7.4:+1103675 | MS.gene22697:CDS |
| GGACTTGCTACTGTCCTTCT+TGG | 0.268455 | 7.4:+1103358 | MS.gene22697:CDS |
| CATGGAATAATTGGTATTAT+AGG | 0.273911 | 7.4:+1103226 | MS.gene22697:CDS |
| CATTCAATCATTCAATTTGT+TGG | 0.280269 | 7.4:+1103325 | MS.gene22697:CDS |
| TGCCAAACGGGTTTGCATAT+TGG | 0.291944 | 7.4:-1101367 | None:intergenic |
| AATGGCAAAGCTAAGATCTT+TGG | 0.310082 | 7.4:+1101186 | None:intergenic |
| CCTGCTGCTGTGGCAACAAA+TGG | 0.314910 | 7.4:+1102328 | MS.gene22697:CDS |
| CCTTGTGCTAAGTATTCTTC+AGG | 0.315018 | 7.4:+1103444 | MS.gene22697:CDS |
| CAATTTGTTGGATTTGCATT+TGG | 0.319893 | 7.4:+1103337 | MS.gene22697:CDS |
| CCCTACACAGTTGGGTGGGT+GGG | 0.331717 | 7.4:+1102148 | MS.gene22697:CDS |
| CTTCAAACAACAATTCCATT+TGG | 0.339138 | 7.4:+1102376 | MS.gene22697:CDS |
| CTGCTGCTGTGGCAACAAAT+GGG | 0.354136 | 7.4:+1102329 | MS.gene22697:CDS |
| CCACAGTTGGTTTGGAAGAA+TGG | 0.354486 | 7.4:+1103730 | MS.gene22697:CDS |
| ATGGAATAATTGGTATTATA+GGG | 0.356476 | 7.4:+1103227 | MS.gene22697:CDS |
| ACAGTTGGGTGGGTGGGGAT+TGG | 0.365724 | 7.4:+1102154 | MS.gene22697:CDS |
| AACTTCAATACCATTGCATT+AGG | 0.373456 | 7.4:+1101259 | MS.gene22697:CDS |
| CTGGTATGTGGACATGCATT+TGG | 0.374194 | 7.4:-1103396 | None:intergenic |
| ATTCTTCTTGAGACCAAATA+GGG | 0.382671 | 7.4:+1103676 | MS.gene22697:CDS |
| CTTCTCCAAGAGGATCCATT+TGG | 0.387230 | 7.4:-1103925 | None:intergenic |
| GCAGCAGGCACGTTATTTAG+AGG | 0.399879 | 7.4:-1102313 | None:intergenic |
| CATTCCCAAAACTATGTTCA+AGG | 0.410754 | 7.4:-1103768 | None:intergenic |
| ATACCAGCTCACAGAGGAAT+TGG | 0.414517 | 7.4:+1103412 | MS.gene22697:CDS |
| AAAATTGGTTGCTTTCCAAA+TGG | 0.417606 | 7.4:-1102391 | None:intergenic |
| CCTACACAGTTGGGTGGGTG+GGG | 0.424223 | 7.4:+1102149 | MS.gene22697:CDS |
| AATTCATATGTATGCCAAAC+GGG | 0.434998 | 7.4:-1101379 | None:intergenic |
| ACAAGCTATGGATTCCTTGT+TGG | 0.442212 | 7.4:+1103821 | MS.gene22697:CDS |
| CTCCAATATGCAAACCCGTT+TGG | 0.444241 | 7.4:+1101365 | MS.gene22697:CDS |
| CCATTTGTTGCCACAGCAGC+AGG | 0.445115 | 7.4:-1102328 | None:intergenic |
| AATTTGTACCACAGTTGGTT+TGG | 0.448506 | 7.4:+1103722 | MS.gene22697:CDS |
| CCAAGAAATATTCAAACAAA+AGG | 0.450332 | 7.4:+1103956 | MS.gene22697:CDS |
| ATCAAGCAGTATTATCTAAG+AGG | 0.452095 | 7.4:+1102250 | MS.gene22697:CDS |
| CCTTCCACCAAATTTCCAAA+TGG | 0.454867 | 7.4:+1103910 | MS.gene22697:CDS |
| TGCGAGGTACTTCAAACATA+AGG | 0.459343 | 7.4:+1103282 | MS.gene22697:CDS |
| AAATATTGGCATATTTAAAA+CGG | 0.460423 | 7.4:+1103873 | MS.gene22697:CDS |
| TGGTATGTGGACATGCATTT+GGG | 0.466439 | 7.4:-1103395 | None:intergenic |
| CAGCAGGAGCAACGAATGCT+TGG | 0.473840 | 7.4:+1103795 | MS.gene22697:CDS |
| TCTCATTTGAATCAAACCAT+TGG | 0.474801 | 7.4:-1103197 | None:intergenic |
| CCATTTGGAAATTTGGTGGA+AGG | 0.482086 | 7.4:-1103910 | None:intergenic |
| TGAATCAAACCATTGGATGC+TGG | 0.484210 | 7.4:-1103190 | None:intergenic |
| ATTCAAATGAGAAAGAATCA+TGG | 0.487178 | 7.4:+1103208 | MS.gene22697:CDS |
| AATTTCCAAATGGATCCTCT+TGG | 0.487835 | 7.4:+1103920 | MS.gene22697:CDS |
| GGAGATGATATATTCTGATA+AGG | 0.491112 | 7.4:-1101346 | None:intergenic |
| TCAAACATAAGGAACCCCTT+TGG | 0.493885 | 7.4:+1103293 | MS.gene22697:CDS |
| TGTCATCATGCTTTGACAGA+TGG | 0.495892 | 7.4:-1102447 | None:intergenic |
| ACCCTACACAGTTGGGTGGG+TGG | 0.496193 | 7.4:+1102147 | MS.gene22697:CDS |
| TTGGCATACATATGAATTGA+GGG | 0.509114 | 7.4:+1101384 | MS.gene22697:CDS |
| CATTTGGAAATTTGGTGGAA+GGG | 0.509644 | 7.4:-1103909 | None:intergenic |
| GGATCCATTTGGAAATTTGG+TGG | 0.510637 | 7.4:-1103914 | None:intergenic |
| CCCACCCACCCAACTGTGTA+GGG | 0.511172 | 7.4:-1102148 | None:intergenic |
| ATGCATATCCTAACAAAAGA+TGG | 0.513584 | 7.4:-1101220 | None:intergenic |
| TGTGGAATTTGTACCACAGT+TGG | 0.515734 | 7.4:+1103717 | MS.gene22697:CDS |
| TGCTGCTGTGGCAACAAATG+GGG | 0.517059 | 7.4:+1102330 | MS.gene22697:CDS |
| CTCGCAACAATTGCACCTAC+TGG | 0.521608 | 7.4:-1103265 | None:intergenic |
| GATATATTCTGATAAGGTGG+AGG | 0.531218 | 7.4:-1101340 | None:intergenic |
| CAATTCATATGTATGCCAAA+CGG | 0.533146 | 7.4:-1101380 | None:intergenic |
| TATCTGCACCCTACACAGTT+GGG | 0.533408 | 7.4:+1102140 | MS.gene22697:CDS |
| ATTCCAAGTTTCGCAAAATG+TGG | 0.534133 | 7.4:+1103699 | MS.gene22697:CDS |
| ATAATTGGTATTATAGGGTG+GGG | 0.536263 | 7.4:+1103232 | MS.gene22697:CDS |
| GATGATATATTCTGATAAGG+TGG | 0.538968 | 7.4:-1101343 | None:intergenic |
| TAAGATCTTTGGTTCAGCTA+TGG | 0.539939 | 7.4:+1101197 | MS.gene22697:CDS |
| TTCCTCTGTGAGCTGGTATG+TGG | 0.543323 | 7.4:-1103408 | None:intergenic |
| CTGCACCCTACACAGTTGGG+TGG | 0.544650 | 7.4:+1102143 | MS.gene22697:CDS |
| ATGCCAATTCCTCTGTGAGC+TGG | 0.546668 | 7.4:-1103415 | None:intergenic |
| AATAATTGGTATTATAGGGT+GGG | 0.550790 | 7.4:+1103231 | MS.gene22697:CDS |
| AATGCTTGGAAGACAAGCTA+TGG | 0.552134 | 7.4:+1103809 | MS.gene22697:CDS |
| TTATCTGCACCCTACACAGT+TGG | 0.554095 | 7.4:+1102139 | MS.gene22697:CDS |
| GAATAATTGGTATTATAGGG+TGG | 0.554975 | 7.4:+1103230 | MS.gene22697:CDS |
| TTTGGCATACATATGAATTG+AGG | 0.559705 | 7.4:+1101383 | MS.gene22697:CDS |
| ATGGTGTTCATGTGGATGCT+TGG | 0.562567 | 7.4:-1102428 | None:intergenic |
| TTGAATGTAGATAGAACCAA+AGG | 0.567909 | 7.4:-1103309 | None:intergenic |
| GTTCAAGTGCAATGGTGGGA+TGG | 0.570789 | 7.4:+1102203 | MS.gene22697:CDS |
| AAATAACGTGCCTGCTGCTG+TGG | 0.575038 | 7.4:+1102318 | MS.gene22697:CDS |
| GGTTGGTTCAAGTGCAATGG+TGG | 0.590706 | 7.4:+1102198 | MS.gene22697:CDS |
| TGCACCCTACACAGTTGGGT+GGG | 0.592706 | 7.4:+1102144 | MS.gene22697:CDS |
| TGAATGTAGATAGAACCAAA+GGG | 0.600269 | 7.4:-1103308 | None:intergenic |
| AGTAGAGTTGTAATCCAAGA+AGG | 0.601579 | 7.4:-1103372 | None:intergenic |
| GGAAAGATTTCTTCTCCAAG+AGG | 0.601984 | 7.4:-1103935 | None:intergenic |
| TCTATGGATCCAGCATCCAA+TGG | 0.602260 | 7.4:+1103181 | MS.gene22697:CDS |
| CCCCACCCACCCAACTGTGT+AGG | 0.602301 | 7.4:-1102149 | None:intergenic |
| ATATATTCTGATAAGGTGGA+GGG | 0.605129 | 7.4:-1101339 | None:intergenic |
| CCTGAAGAATACTTAGCACA+AGG | 0.616760 | 7.4:-1103444 | None:intergenic |
| TCAGAAGTCATTGCAAACAA+AGG | 0.618190 | 7.4:+1102283 | MS.gene22697:CDS |
| CAACAATTGCACCTACTGGT+AGG | 0.621409 | 7.4:-1103261 | None:intergenic |
| TATTCTGATAAGGTGGAGGG+AGG | 0.635106 | 7.4:-1101336 | None:intergenic |
| AGGAGATGACACAACATCGT+CGG | 0.644400 | 7.4:+1101279 | MS.gene22697:CDS |
| TGCAGATAATATGATTGTTG+TGG | 0.646735 | 7.4:-1102125 | None:intergenic |
| CATCGTCGGAAAGTACATGC+AGG | 0.648599 | 7.4:+1101293 | MS.gene22697:CDS |
| CCATTCTTCCAAACCAACTG+TGG | 0.660006 | 7.4:-1103730 | None:intergenic |
| AATGGTTGGTTCAAGTGCAA+TGG | 0.660637 | 7.4:+1102195 | MS.gene22697:CDS |
| TGGGGATTAATCCTACCAGT+AGG | 0.662402 | 7.4:+1103250 | MS.gene22697:CDS |
| TGTGTCATCTCCTAATGCAA+TGG | 0.677178 | 7.4:-1101269 | None:intergenic |
| CAGTAGGTGCAATTGTTGCG+AGG | 0.680721 | 7.4:+1103266 | MS.gene22697:CDS |
| TTTGACAGATGGTGTTCATG+TGG | 0.686431 | 7.4:-1102436 | None:intergenic |
| GTTGGTTCAAGTGCAATGGT+GGG | 0.692220 | 7.4:+1102199 | MS.gene22697:CDS |
| GAATGTAGATAGAACCAAAG+GGG | 0.711232 | 7.4:-1103307 | None:intergenic |
| GTGGGATGGATTAATAAACG+TGG | 0.733010 | 7.4:+1102217 | MS.gene22697:CDS |
| TAACAATTATAATACCAACA+AGG | 0.736320 | 7.4:-1103835 | None:intergenic |
| GTCCACATACCAGCTCACAG+AGG | 0.789985 | 7.4:+1103406 | MS.gene22697:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAAATCTTTAATTTC+TGG | - | chr7.4:1102058-1102077 | None:intergenic | 10.0% |
| !!! | TCAATTTTAAATCAAAATAA+TGG | - | chr7.4:1103106-1103125 | None:intergenic | 10.0% |
| !! | AAAGAATAATATCATTTCAA+TGG | + | chr7.4:1102727-1102746 | MS.gene22697:intron | 15.0% |
| !! | AAATATTGGCATATTTAAAA+CGG | + | chr7.4:1103873-1103892 | MS.gene22697:CDS | 15.0% |
| !! | AATTAAAGTTAGCAATAATT+TGG | - | chr7.4:1102567-1102586 | None:intergenic | 15.0% |
| !! | ATTCTTTGTTAATGTTAAAA+GGG | - | chr7.4:1102714-1102733 | None:intergenic | 15.0% |
| !! | TATTCTTTGTTAATGTTAAA+AGG | - | chr7.4:1102715-1102734 | None:intergenic | 15.0% |
| !!! | ATTATATTTGATTTTTCTTC+AGG | + | chr7.4:1102478-1102497 | MS.gene22697:CDS | 15.0% |
| !!! | TCTTTTATAACTTTGTTATT+AGG | + | chr7.4:1101711-1101730 | MS.gene22697:intron | 15.0% |
| !! | ACAAAACAACTTAAAAAACA+AGG | - | chr7.4:1103992-1104011 | None:intergenic | 20.0% |
| !! | ATCAAACATAATAAGTGAAA+TGG | - | chr7.4:1101476-1101495 | None:intergenic | 20.0% |
| !! | ATCAATGATAGATATTACTT+TGG | - | chr7.4:1101586-1101605 | None:intergenic | 20.0% |
| !! | ATCACAAAAATTAAGAAAGT+TGG | + | chr7.4:1102801-1102820 | MS.gene22697:intron | 20.0% |
| !! | ATGGAATAATTGGTATTATA+GGG | + | chr7.4:1103227-1103246 | MS.gene22697:CDS | 20.0% |
| !! | TAACAATTATAATACCAACA+AGG | - | chr7.4:1103838-1103857 | None:intergenic | 20.0% |
| !! | TCGCAAAAGTTATTTAAATT+TGG | + | chr7.4:1103582-1103601 | MS.gene22697:intron | 20.0% |
| !! | TGCAAACATAAACTAATTAT+CGG | - | chr7.4:1102873-1102892 | None:intergenic | 20.0% |
| !! | TTCTTTGTTAATGTTAAAAG+GGG | - | chr7.4:1102713-1102732 | None:intergenic | 20.0% |
| ! | AATAATTGGTATTATAGGGT+GGG | + | chr7.4:1103231-1103250 | MS.gene22697:CDS | 25.0% |
| ! | AGAAAGAATCATGGAATAAT+TGG | + | chr7.4:1103217-1103236 | MS.gene22697:CDS | 25.0% |
| ! | ATAGATATTACTTTGGACTT+TGG | - | chr7.4:1101579-1101598 | None:intergenic | 25.0% |
| ! | ATTCAAATGAGAAAGAATCA+TGG | + | chr7.4:1103208-1103227 | MS.gene22697:CDS | 25.0% |
| ! | CAAACATAAACTAATTATCG+GGG | - | chr7.4:1102871-1102890 | None:intergenic | 25.0% |
| ! | CAATCAGATCAAAATAATGT+TGG | + | chr7.4:1101926-1101945 | MS.gene22697:intron | 25.0% |
| ! | CATGGAATAATTGGTATTAT+AGG | + | chr7.4:1103226-1103245 | MS.gene22697:CDS | 25.0% |
| ! | CATTCAATCATTCAATTTGT+TGG | + | chr7.4:1103325-1103344 | MS.gene22697:CDS | 25.0% |
| ! | CCAAGAAATATTCAAACAAA+AGG | + | chr7.4:1103956-1103975 | MS.gene22697:CDS | 25.0% |
| ! | GATTAATTTCAACTGAATCT+TGG | + | chr7.4:1103014-1103033 | MS.gene22697:intron | 25.0% |
| ! | GCAAACATAAACTAATTATC+GGG | - | chr7.4:1102872-1102891 | None:intergenic | 25.0% |
| ! | GTACTAAAAGCCAATAAAAT+TGG | - | chr7.4:1102409-1102428 | None:intergenic | 25.0% |
| ! | TGATGTGATGAATAAATGAA+TGG | + | chr7.4:1101602-1101621 | MS.gene22697:intron | 25.0% |
| ! | TTAAGCAAAATACTAATCTC+CGG | + | chr7.4:1101790-1101809 | MS.gene22697:intron | 25.0% |
| ! | TTATTGCAGTACACAAAAAA+TGG | + | chr7.4:1102097-1102116 | MS.gene22697:intron | 25.0% |
| ! | TTTCAACGAACTTATGAATT+AGG | - | chr7.4:1101646-1101665 | None:intergenic | 25.0% |
| !! | GCTTTAAGTTATAAAACTCA+TGG | - | chr7.4:1101746-1101765 | None:intergenic | 25.0% |
| !! | TTCGTTGAAATAACAACTTT+TGG | + | chr7.4:1101656-1101675 | MS.gene22697:intron | 25.0% |
| !! | TTGAAAGGAGTCTTATATAA+AGG | + | chr7.4:1102970-1102989 | MS.gene22697:intron | 25.0% |
| !!! | AATACAATCTTGATAATGCA+GGG | + | chr7.4:1104029-1104048 | MS.gene22697:intron | 25.0% |
| !!! | ATTTTCTAGAGATGGAAAAA+TGG | + | chr7.4:1102177-1102196 | MS.gene22697:CDS | 25.0% |
| !!! | CAACATTATTTTGATCTGAT+TGG | - | chr7.4:1101928-1101947 | None:intergenic | 25.0% |
| !!! | CCTTTTGTTTGAATATTTCT+TGG | - | chr7.4:1103959-1103978 | None:intergenic | 25.0% |
| !!! | TAATACAATCTTGATAATGC+AGG | + | chr7.4:1104028-1104047 | MS.gene22697:intron | 25.0% |
| !!! | TATTTTGATCTGATTGGAAT+TGG | - | chr7.4:1101922-1101941 | None:intergenic | 25.0% |
| !!! | TGTTTGATTGTTGTTTAGAA+TGG | + | chr7.4:1101488-1101507 | MS.gene22697:intron | 25.0% |
| AAATGGGGCTGAAATTTATT+TGG | + | chr7.4:1102345-1102364 | MS.gene22697:CDS | 30.0% | |
| AACCATGTATGTTCAGATAT+TGG | + | chr7.4:1103652-1103671 | MS.gene22697:intron | 30.0% | |
| AACTTCAATACCATTGCATT+AGG | + | chr7.4:1101259-1101278 | MS.gene22697:CDS | 30.0% | |
| AATTCATATGTATGCCAAAC+GGG | - | chr7.4:1101382-1101401 | None:intergenic | 30.0% | |
| ACGATCATACTAGTAAATTG+TGG | - | chr7.4:1102754-1102773 | None:intergenic | 30.0% | |
| AGTTATCGTTCTCGAAATAT+TGG | + | chr7.4:1103859-1103878 | MS.gene22697:CDS | 30.0% | |
| ATAATTGGTATTATAGGGTG+GGG | + | chr7.4:1103232-1103251 | MS.gene22697:CDS | 30.0% | |
| ATATATTCTGATAAGGTGGA+GGG | - | chr7.4:1101342-1101361 | None:intergenic | 30.0% | |
| ATCAAGCAGTATTATCTAAG+AGG | + | chr7.4:1102250-1102269 | MS.gene22697:CDS | 30.0% | |
| ATGCATATCCTAACAAAAGA+TGG | - | chr7.4:1101223-1101242 | None:intergenic | 30.0% | |
| ATTCTTCTTGAGACCAAATA+GGG | + | chr7.4:1103676-1103695 | MS.gene22697:CDS | 30.0% | |
| CAATTCATATGTATGCCAAA+CGG | - | chr7.4:1101383-1101402 | None:intergenic | 30.0% | |
| CTTCAAACAACAATTCCATT+TGG | + | chr7.4:1102376-1102395 | MS.gene22697:CDS | 30.0% | |
| GAATAATTGGTATTATAGGG+TGG | + | chr7.4:1103230-1103249 | MS.gene22697:CDS | 30.0% | |
| GAATTCTAATTCCTCATTGT+TGG | + | chr7.4:1101425-1101444 | MS.gene22697:intron | 30.0% | |
| GATGATATATTCTGATAAGG+TGG | - | chr7.4:1101346-1101365 | None:intergenic | 30.0% | |
| GGAGATGATATATTCTGATA+AGG | - | chr7.4:1101349-1101368 | None:intergenic | 30.0% | |
| GTTATTATAACATGAGTCAG+TGG | - | chr7.4:1103474-1103493 | None:intergenic | 30.0% | |
| TAATGCAGCTGAAATTTGAA+AGG | + | chr7.4:1102955-1102974 | MS.gene22697:intron | 30.0% | |
| TCTCATTTGAATCAAACCAT+TGG | - | chr7.4:1103200-1103219 | None:intergenic | 30.0% | |
| TGAATGGAAAAAATGTGGTT+GGG | - | chr7.4:1101861-1101880 | None:intergenic | 30.0% | |
| TGAATGTAGATAGAACCAAA+GGG | - | chr7.4:1103311-1103330 | None:intergenic | 30.0% | |
| TGCAGATAATATGATTGTTG+TGG | - | chr7.4:1102128-1102147 | None:intergenic | 30.0% | |
| TTGAATGTAGATAGAACCAA+AGG | - | chr7.4:1103312-1103331 | None:intergenic | 30.0% | |
| TTGGCATACATATGAATTGA+GGG | + | chr7.4:1101384-1101403 | MS.gene22697:CDS | 30.0% | |
| TTTGGCATACATATGAATTG+AGG | + | chr7.4:1101383-1101402 | MS.gene22697:CDS | 30.0% | |
| ! | AAAATTGGTTGCTTTCCAAA+TGG | - | chr7.4:1102394-1102413 | None:intergenic | 30.0% |
| ! | TCAACGAGATCTTATGTTTT+GGG | - | chr7.4:1102777-1102796 | None:intergenic | 30.0% |
| ! | TGGAAAGCAACCAATTTTAT+TGG | + | chr7.4:1102396-1102415 | MS.gene22697:CDS | 30.0% |
| ! | TTGAAAATTATCCCTTTTGC+AGG | + | chr7.4:1103157-1103176 | MS.gene22697:intron | 30.0% |
| !! | CAATTTGTTGGATTTGCATT+TGG | + | chr7.4:1103337-1103356 | MS.gene22697:CDS | 30.0% |
| !!! | TTCTGGCTAGATTTTAGAAT+TGG | - | chr7.4:1102041-1102060 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTCCTTCGCCT+CGG | + | chr7.4:1102649-1102668 | MS.gene22697:intron | 30.0% |
| AATTTCCAAATGGATCCTCT+TGG | + | chr7.4:1103920-1103939 | MS.gene22697:CDS | 35.0% | |
| AATTTGTACCACAGTTGGTT+TGG | + | chr7.4:1103722-1103741 | MS.gene22697:CDS | 35.0% | |
| AGAGGATCCATTTGGAAATT+TGG | - | chr7.4:1103920-1103939 | None:intergenic | 35.0% | |
| AGTAGAGTTGTAATCCAAGA+AGG | - | chr7.4:1103375-1103394 | None:intergenic | 35.0% | |
| ATTCCAAGTTTCGCAAAATG+TGG | + | chr7.4:1103699-1103718 | MS.gene22697:CDS | 35.0% | |
| CATTCCCAAAACTATGTTCA+AGG | - | chr7.4:1103771-1103790 | None:intergenic | 35.0% | |
| CATTCTTCTTGAGACCAAAT+AGG | + | chr7.4:1103675-1103694 | MS.gene22697:CDS | 35.0% | |
| CCTTGTGAATGGAAAAAATG+TGG | - | chr7.4:1101866-1101885 | None:intergenic | 35.0% | |
| GAATGTAGATAGAACCAAAG+GGG | - | chr7.4:1103310-1103329 | None:intergenic | 35.0% | |
| GATATATTCTGATAAGGTGG+AGG | - | chr7.4:1101343-1101362 | None:intergenic | 35.0% | |
| GTGAATGGAAAAAATGTGGT+TGG | - | chr7.4:1101862-1101881 | None:intergenic | 35.0% | |
| TAGAAGTAGAACCAACAATG+AGG | - | chr7.4:1101439-1101458 | None:intergenic | 35.0% | |
| TCAGAAGTCATTGCAAACAA+AGG | + | chr7.4:1102283-1102302 | MS.gene22697:CDS | 35.0% | |
| TCTAGAGATGGAAAAATGGT+TGG | + | chr7.4:1102181-1102200 | MS.gene22697:CDS | 35.0% | |
| TGCCAATATCTGAACATACA+TGG | - | chr7.4:1103657-1103676 | None:intergenic | 35.0% | |
| ! | ATTCCACATTTTGCGAAACT+TGG | - | chr7.4:1103705-1103724 | None:intergenic | 35.0% |
| ! | CATTTGGAAATTTGGTGGAA+GGG | - | chr7.4:1103912-1103931 | None:intergenic | 35.0% |
| ! | GTCAACGAGATCTTATGTTT+TGG | - | chr7.4:1102778-1102797 | None:intergenic | 35.0% |
| ! | GTTAATGTTAAAAGGGGTGT+TGG | - | chr7.4:1102707-1102726 | None:intergenic | 35.0% |
| ! | TAAGATCTTTGGTTCAGCTA+TGG | + | chr7.4:1101197-1101216 | MS.gene22697:CDS | 35.0% |
| ! | TTTTCTTCAGGTGCAAAATC+AGG | + | chr7.4:1102490-1102509 | MS.gene22697:CDS | 35.0% |
| !! | AGCAGAGAGCTTTTTATTTG+AGG | + | chr7.4:1103062-1103081 | MS.gene22697:intron | 35.0% |
| !! | GCAGAGAGCTTTTTATTTGA+GGG | + | chr7.4:1103063-1103082 | MS.gene22697:intron | 35.0% |
| !!! | CCACATTTTTTCCATTCACA+AGG | + | chr7.4:1101863-1101882 | MS.gene22697:intron | 35.0% |
| AATGCTTGGAAGACAAGCTA+TGG | + | chr7.4:1103809-1103828 | MS.gene22697:CDS | 40.0% | |
| ACAAGCTATGGATTCCTTGT+TGG | + | chr7.4:1103821-1103840 | MS.gene22697:CDS | 40.0% | |
| CCTGAAGAATACTTAGCACA+AGG | - | chr7.4:1103447-1103466 | None:intergenic | 40.0% | |
| CCTTCCACCAAATTTCCAAA+TGG | + | chr7.4:1103910-1103929 | MS.gene22697:CDS | 40.0% | |
| CCTTGTGCTAAGTATTCTTC+AGG | + | chr7.4:1103444-1103463 | MS.gene22697:CDS | 40.0% | |
| CGAAACTTGGAATCCCTATT+TGG | - | chr7.4:1103692-1103711 | None:intergenic | 40.0% | |
| GATCCATAGAACCTGCAAAA+GGG | - | chr7.4:1103171-1103190 | None:intergenic | 40.0% | |
| GATCTGATTGGAATTGGACT+CGG | - | chr7.4:1101916-1101935 | None:intergenic | 40.0% | |
| GGAAAGATTTCTTCTCCAAG+AGG | - | chr7.4:1103938-1103957 | None:intergenic | 40.0% | |
| GGATCCATTTGGAAATTTGG+TGG | - | chr7.4:1103917-1103936 | None:intergenic | 40.0% | |
| TCAAACATAAGGAACCCCTT+TGG | + | chr7.4:1103293-1103312 | MS.gene22697:CDS | 40.0% | |
| TGAATCAAACCATTGGATGC+TGG | - | chr7.4:1103193-1103212 | None:intergenic | 40.0% | |
| TGGAAAAAATGTGGTTGGGA+TGG | - | chr7.4:1101857-1101876 | None:intergenic | 40.0% | |
| TGGTATGTGGACATGCATTT+GGG | - | chr7.4:1103398-1103417 | None:intergenic | 40.0% | |
| TGTCATCATGCTTTGACAGA+TGG | - | chr7.4:1102450-1102469 | None:intergenic | 40.0% | |
| TGTGGAATTTGTACCACAGT+TGG | + | chr7.4:1103717-1103736 | MS.gene22697:CDS | 40.0% | |
| TGTGTCATCTCCTAATGCAA+TGG | - | chr7.4:1101272-1101291 | None:intergenic | 40.0% | |
| TTGGATAGCTCAAGAGTTAG+AGG | - | chr7.4:1102688-1102707 | None:intergenic | 40.0% | |
| TTTGACAGATGGTGTTCATG+TGG | - | chr7.4:1102439-1102458 | None:intergenic | 40.0% | |
| ! | AATGGTTGGTTCAAGTGCAA+TGG | + | chr7.4:1102195-1102214 | MS.gene22697:CDS | 40.0% |
| ! | AGCTATGGCCATCTTTTGTT+AGG | + | chr7.4:1101212-1101231 | MS.gene22697:CDS | 40.0% |
| ! | CCATTTGGAAATTTGGTGGA+AGG | - | chr7.4:1103913-1103932 | None:intergenic | 40.0% |
| ! | GCAGCCTTGAACATAGTTTT+GGG | + | chr7.4:1103764-1103783 | MS.gene22697:CDS | 40.0% |
| ! | TATCCCTTTTGCAGGTTCTA+TGG | + | chr7.4:1103165-1103184 | MS.gene22697:intron | 40.0% |
| ! | TGCAGCCTTGAACATAGTTT+TGG | + | chr7.4:1103763-1103782 | MS.gene22697:CDS | 40.0% |
| ! | TGCGAGGTACTTCAAACATA+AGG | + | chr7.4:1103282-1103301 | MS.gene22697:CDS | 40.0% |
| !! | GGGATTGGATTTTCTAGAGA+TGG | + | chr7.4:1102169-1102188 | MS.gene22697:CDS | 40.0% |
| !! | GTGGGATGGATTAATAAACG+TGG | + | chr7.4:1102217-1102236 | MS.gene22697:CDS | 40.0% |
| ACCAGATTCTCAAGGAAGTC+CGG | - | chr7.4:1101812-1101831 | None:intergenic | 45.0% | |
| AGGAGATGACACAACATCGT+CGG | + | chr7.4:1101279-1101298 | MS.gene22697:CDS | 45.0% | |
| ATACCAGCTCACAGAGGAAT+TGG | + | chr7.4:1103412-1103431 | MS.gene22697:CDS | 45.0% | |
| ATGGATGATCTCGCTAAAGG+TGG | - | chr7.4:1101838-1101857 | None:intergenic | 45.0% | |
| ATGGTGTTCATGTGGATGCT+TGG | - | chr7.4:1102431-1102450 | None:intergenic | 45.0% | |
| CAACAATTGCACCTACTGGT+AGG | - | chr7.4:1103264-1103283 | None:intergenic | 45.0% | |
| CCATTCTTCCAAACCAACTG+TGG | - | chr7.4:1103733-1103752 | None:intergenic | 45.0% | |
| CGGATCCTTAAGAAAGGCTT+CGG | - | chr7.4:1101896-1101915 | None:intergenic | 45.0% | |
| CTCCAATATGCAAACCCGTT+TGG | + | chr7.4:1101365-1101384 | MS.gene22697:CDS | 45.0% | |
| CTGGTATGTGGACATGCATT+TGG | - | chr7.4:1103399-1103418 | None:intergenic | 45.0% | |
| CTTCTCCAAGAGGATCCATT+TGG | - | chr7.4:1103928-1103947 | None:intergenic | 45.0% | |
| GACTTCCTTGAGAATCTGGT+TGG | + | chr7.4:1101812-1101831 | MS.gene22697:intron | 45.0% | |
| GGATCCATAGAACCTGCAAA+AGG | - | chr7.4:1103172-1103191 | None:intergenic | 45.0% | |
| GGATCCTTAAGAAAGGCTTC+GGG | - | chr7.4:1101895-1101914 | None:intergenic | 45.0% | |
| TATCTGCACCCTACACAGTT+GGG | + | chr7.4:1102140-1102159 | MS.gene22697:CDS | 45.0% | |
| TATTCTGATAAGGTGGAGGG+AGG | - | chr7.4:1101339-1101358 | None:intergenic | 45.0% | |
| TCGGGTTCAAACCTTGTGAA+TGG | - | chr7.4:1101877-1101896 | None:intergenic | 45.0% | |
| TCTATGGATCCAGCATCCAA+TGG | + | chr7.4:1103181-1103200 | MS.gene22697:CDS | 45.0% | |
| TGAACCCGAAGCCTTTCTTA+AGG | + | chr7.4:1101888-1101907 | MS.gene22697:intron | 45.0% | |
| TGGACTCGGATCCTTAAGAA+AGG | - | chr7.4:1101902-1101921 | None:intergenic | 45.0% | |
| TGGGGATTAATCCTACCAGT+AGG | + | chr7.4:1103250-1103269 | MS.gene22697:CDS | 45.0% | |
| TTATCTGCACCCTACACAGT+TGG | + | chr7.4:1102139-1102158 | MS.gene22697:CDS | 45.0% | |
| ! | GTTGGTTCAAGTGCAATGGT+GGG | + | chr7.4:1102199-1102218 | MS.gene22697:CDS | 45.0% |
| ! | TGCCAAACGGGTTTGCATAT+TGG | - | chr7.4:1101370-1101389 | None:intergenic | 45.0% |
| !! | CCACAGTTGGTTTGGAAGAA+TGG | + | chr7.4:1103730-1103749 | MS.gene22697:CDS | 45.0% |
| AAATAACGTGCCTGCTGCTG+TGG | + | chr7.4:1102318-1102337 | MS.gene22697:CDS | 50.0% | |
| ATGAGTTCAAACCGAGGCGA+AGG | - | chr7.4:1102663-1102682 | None:intergenic | 50.0% | |
| ATGCCAATTCCTCTGTGAGC+TGG | - | chr7.4:1103418-1103437 | None:intergenic | 50.0% | |
| CAGTAGGTGCAATTGTTGCG+AGG | + | chr7.4:1103266-1103285 | MS.gene22697:CDS | 50.0% | |
| CTCGCAACAATTGCACCTAC+TGG | - | chr7.4:1103268-1103287 | None:intergenic | 50.0% | |
| CTGCTGCTGTGGCAACAAAT+GGG | + | chr7.4:1102329-1102348 | MS.gene22697:CDS | 50.0% | |
| GAGGTCATGAGTTCAAACCG+AGG | - | chr7.4:1102669-1102688 | None:intergenic | 50.0% | |
| GCAGCAGGCACGTTATTTAG+AGG | - | chr7.4:1102316-1102335 | None:intergenic | 50.0% | |
| GGGATGGATGATCTCGCTAA+AGG | - | chr7.4:1101841-1101860 | None:intergenic | 50.0% | |
| TCCGGACTTCCTTGAGAATC+TGG | + | chr7.4:1101808-1101827 | MS.gene22697:intron | 50.0% | |
| TGCTGCTGTGGCAACAAATG+GGG | + | chr7.4:1102330-1102349 | MS.gene22697:CDS | 50.0% | |
| TTCCTCTGTGAGCTGGTATG+TGG | - | chr7.4:1103411-1103430 | None:intergenic | 50.0% | |
| ! | CATCGTCGGAAAGTACATGC+AGG | + | chr7.4:1101293-1101312 | MS.gene22697:CDS | 50.0% |
| ! | GGTTGGTTCAAGTGCAATGG+TGG | + | chr7.4:1102198-1102217 | MS.gene22697:CDS | 50.0% |
| ! | GTTCAAGTGCAATGGTGGGA+TGG | + | chr7.4:1102203-1102222 | MS.gene22697:CDS | 50.0% |
| !! | GGACTTGCTACTGTCCTTCT+TGG | + | chr7.4:1103358-1103377 | MS.gene22697:CDS | 50.0% |
| !!! | GTTTTGGGAATGCAAGCAGC+AGG | + | chr7.4:1103779-1103798 | MS.gene22697:CDS | 50.0% |
| CAGCAGGAGCAACGAATGCT+TGG | + | chr7.4:1103795-1103814 | MS.gene22697:CDS | 55.0% | |
| CCTGCTGCTGTGGCAACAAA+TGG | + | chr7.4:1102328-1102347 | MS.gene22697:CDS | 55.0% | |
| GGTGGCCAACCAGATTCTCA+AGG | - | chr7.4:1101820-1101839 | None:intergenic | 55.0% | |
| GTCCACATACCAGCTCACAG+AGG | + | chr7.4:1103406-1103425 | MS.gene22697:CDS | 55.0% | |
| TGCACCCTACACAGTTGGGT+GGG | + | chr7.4:1102144-1102163 | MS.gene22697:CDS | 55.0% | |
| ! | CCATTTGTTGCCACAGCAGC+AGG | - | chr7.4:1102331-1102350 | None:intergenic | 55.0% |
| ACAGTTGGGTGGGTGGGGAT+TGG | + | chr7.4:1102154-1102173 | MS.gene22697:CDS | 60.0% | |
| ACCCTACACAGTTGGGTGGG+TGG | + | chr7.4:1102147-1102166 | MS.gene22697:CDS | 60.0% | |
| CCCACCCACCCAACTGTGTA+GGG | - | chr7.4:1102151-1102170 | None:intergenic | 60.0% | |
| CCCTACACAGTTGGGTGGGT+GGG | + | chr7.4:1102148-1102167 | MS.gene22697:CDS | 60.0% | |
| CCTACACAGTTGGGTGGGTG+GGG | + | chr7.4:1102149-1102168 | MS.gene22697:CDS | 60.0% | |
| CTGCACCCTACACAGTTGGG+TGG | + | chr7.4:1102143-1102162 | MS.gene22697:CDS | 60.0% | |
| CCCCACCCACCCAACTGTGT+AGG | - | chr7.4:1102152-1102171 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 1101187 | 1104054 | 1101187 | ID=MS.gene22697 |
| chr7.4 | mRNA | 1101187 | 1104054 | 1101187 | ID=MS.gene22697.t1;Parent=MS.gene22697 |
| chr7.4 | exon | 1101187 | 1101405 | 1101187 | ID=MS.gene22697.t1.exon1;Parent=MS.gene22697.t1 |
| chr7.4 | CDS | 1101187 | 1101405 | 1101187 | ID=cds.MS.gene22697.t1;Parent=MS.gene22697.t1 |
| chr7.4 | exon | 1102106 | 1102511 | 1102106 | ID=MS.gene22697.t1.exon2;Parent=MS.gene22697.t1 |
| chr7.4 | CDS | 1102106 | 1102511 | 1102106 | ID=cds.MS.gene22697.t1;Parent=MS.gene22697.t1 |
| chr7.4 | exon | 1103179 | 1103465 | 1103179 | ID=MS.gene22697.t1.exon3;Parent=MS.gene22697.t1 |
| chr7.4 | CDS | 1103179 | 1103465 | 1103179 | ID=cds.MS.gene22697.t1;Parent=MS.gene22697.t1 |
| chr7.4 | exon | 1103668 | 1103977 | 1103668 | ID=MS.gene22697.t1.exon4;Parent=MS.gene22697.t1 |
| chr7.4 | CDS | 1103668 | 1103977 | 1103668 | ID=cds.MS.gene22697.t1;Parent=MS.gene22697.t1 |
| chr7.4 | exon | 1104050 | 1104054 | 1104050 | ID=MS.gene22697.t1.exon5;Parent=MS.gene22697.t1 |
| chr7.4 | CDS | 1104050 | 1104054 | 1104050 | ID=cds.MS.gene22697.t1;Parent=MS.gene22697.t1 |
| Gene Sequence |
| Protein sequence |
