AlfalfaGEDB | MS.gene22958

M. sativa cultivar XinJiangDaYe / MS.gene22958

KEGG: K19985
GO: GO:0000145 GO:0005575 GO:0006904 GO:0008150 GO:0009987 GO:0022406 GO:0032991 GO:0048278 GO:0051179 GO:0051640 GO:0051641 GO:0099023 GO:0140029 GO:0140056
PFAM: PF04091.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22958.t1	XP_013450364.1	99.4	803	5	0	1	803	1	803	0.00E+00	1526.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22958.t1	F4JHH5	71.5	803	208	3	4	803	3	787	0.0e+00	1095.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22958.t1	A0A072U3Y3	99.4	803	5	0	1	803	1	803	0.0e+00	1526.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050258	MS.gene22958	0.806381	8.46E-50	-1.69E-46
MS.gene055386	MS.gene22958	0.813202	2.88E-51	-1.69E-46
MS.gene056519	MS.gene22958	0.801886	7.29E-49	-1.69E-46
MS.gene060522	MS.gene22958	0.838992	2.07E-57	-1.69E-46
MS.gene060933	MS.gene22958	0.80212	6.52E-49	-1.69E-46
MS.gene061100	MS.gene22958	0.809079	2.26E-50	-1.69E-46
MS.gene061160	MS.gene22958	0.813108	3.02E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene22958.t1	MTR_7g108785	99.377	803	5	0	1	803	1	803	1645
MS.gene22958.t1	MTR_1g050505	46.906	808	391	8	7	803	5	785	730
MS.gene22958.t1	MTR_1g087380	45.466	805	388	9	10	801	25	791	712

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene22958.t1	AT4G02350	73.350	803	193	3	4	803	3	787	1206
MS.gene22958.t1	AT4G02350	73.350	803	193	3	4	803	3	787	1206
MS.gene22958.t1	AT3G56640	49.068	805	378	6	7	801	6	788	802

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Find 169 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATCACCACTTTCTTG+TGG	0.590764	7.3:-6076922	None:intergenic
AAACGTTAGGGTTAGAGGAT+GGG	0.510724	7.3:+6075556	MS.gene22958:CDS
AAATGAGGTCATACTTTATT+TGG	0.109713	7.3:+6076559	MS.gene22958:CDS
AAATGGAAGTTGAGAATTTG+TGG	0.455579	7.3:+6075745	MS.gene22958:CDS
AACACCTCAAGCACTTCGCT+CGG	0.562004	7.3:+6074821	MS.gene22958:CDS
AACAGAGTAGACTCAGTGTT+AGG	0.373918	7.3:+6075397	MS.gene22958:CDS
AACGGTAATATTAACGGTGG+TGG	0.524177	7.3:+6075483	MS.gene22958:CDS
AAGAGATCGGAGATCATCGA+CGG	0.653067	7.3:-6074902	None:intergenic
AAGAGATTATTTGGATAAAA+CGG	0.422369	7.3:+6075170	MS.gene22958:CDS
AAGCAGATAGCTGAGGCTAT+AGG	0.486276	7.3:+6075972	MS.gene22958:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGGAAGTTGAGAATTTG+TGG	+	chr7.3:6075745-6075764	MS.gene22958:CDS	30.0%
AAGGATTATGTGAGTCTATT+AGG	+	chr7.3:6075849-6075868	MS.gene22958:CDS	30.0%
AATGGAAGTTGAGAATTTGT+GGG	+	chr7.3:6075746-6075765	MS.gene22958:CDS	30.0%
AATTTAGGTCAATTAGCGAT+AGG	+	chr7.3:6075312-6075331	MS.gene22958:CDS	30.0%
AGAAAAGTGAACAAAGAGTT+CGG	+	chr7.3:6075255-6075274	MS.gene22958:CDS	30.0%
ATATATCGGAGATGATTGTT+GGG	+	chr7.3:6076660-6076679	MS.gene22958:CDS	30.0%
ATTAACGGTAATATTAACGG+TGG	+	chr7.3:6075480-6075499	MS.gene22958:CDS	30.0%
CAATGATCGAGAATGTAAAT+TGG	+	chr7.3:6076498-6076517	MS.gene22958:CDS	30.0%
GAATCCAAAAAAGAAATCAC+TGG	+	chr7.3:6077009-6077028	MS.gene22958:CDS	30.0%
GATTGTTTCAGAAAAGTTGA+AGG	+	chr7.3:6076937-6076956	MS.gene22958:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	6074655	6077066	6074655	ID=MS.gene22958
chr7.3	mRNA	6074655	6077066	6074655	ID=MS.gene22958.t1;Parent=MS.gene22958
chr7.3	exon	6074655	6077066	6074655	ID=MS.gene22958.t1.exon1;Parent=MS.gene22958.t1
chr7.3	CDS	6074655	6077066	6074655	ID=cds.MS.gene22958.t1;Parent=MS.gene22958.t1

Gene Sequence

>MS.gene22958

ATGAACCCGTCGAAACCTCCGCGCCGGAAAATCCCTCAGGCAAACGGCGATGACTCTGGCGACAAACTCGACCAGCTTCTTCTCTCCACCGCCATATCCAACAACGAAGACTTAGGTCCCTTCATCCGCAAAGCTTTCGCTTCCGGCAAACCGGAAACTCTCCAACAACACCTCAAGCACTTCGCTCGGTCTAAAGAATCAGAGATCGAAGAAGTCTGCAAAGCACACTACCAAGACTTCATCCTCGCCGTCGATGATCTCCGATCTCTTCTCTCCGACGTTGAATCTCTCAAGTCATCACTCTCCGATTCGAATTCCAAGCTCCAGTCCGTTGCTCGTCCTCTTCTAACATCACTCGATTCATTCGTTGAAACGCGAAACGTTTCCAAGAATGTTAACCTCGCCATCGATTCAGTTGAATCGTGTGTTCAGTTAACGGAAGTTTGTTCACGCGCCAACGCGCATCTCGCAGGTGATAACTTCTACATGGCGTTGAAGTGTGTGGATGCTATTGAAAGAGATTATTTGGATAAAACGGCTTCGTCGACTTTGAAGAAGATGCTTGAGAAGAAGATTCCAGAGATTCGTTCTTACATAGAGAGAAAAGTGAACAAAGAGTTCGGTGATTGGTTGGTTGAGATCCGTGTTGTGAGTCGCAATTTAGGTCAATTAGCGATAGGTCAAGCTTCATCAGCAAGACAAAGAGAAGAGGATCTTAGAATCAAACAGCGTCAAGCGGAGGAACAGAGTAGACTCAGTGTTAGGGATTGCATTTATGCTTTGGAGGAAGAAGATGAAGATGGAATGGCTTCCGATGACGGTTACATTAACGGTAATATTAACGGTGGTGGAGTTTTGGGATTTGATTTGACTCCTTTGTATAGAGCATATCATATTCATCAAACGTTAGGGTTAGAGGATGGGTTTAAGCAGTATTATTTTGAGAATCGGAAGCTTCAGTTGACTTCGGATTTTCAGGTATCATCGATGACGCCTTTTCTTGAATCGCATCAAACCTTTTTTGCACAGATTGCAGGTTTCTTTGTGGTGGAGGATCGTGTGTTGAGGACTGGGGGTGGTTTGATATCGAAAATGGAAGTTGAGAATTTGTGGGAGATTGCTGTTAGCAAAATGTGTTCTGTGTTGGAGGATCAGTTCTCTAAAATGCAAACTGCTAATCATCTTTTGTTAATTAAGGATTATGTGAGTCTATTAGGAGTAACACTGCGTAGATTTGGTTACCCGATTGATGCATTGCTTGATGTTTTAAGCAAGCATAGGGATAAGTATCATGAATTGCTGTTGTCAGATTGTAGGAAGCAGATAGCTGAGGCTATAGGCGGTGATAAATTTGAGCAGATGTTGATGAAGAAAGAGTATGAGTATTCAATGAATGTGCTTTCTTTTCAGATTCAAACATCGGATATCATACCTGCTTTTCCTTATCTGGCACCATTTTCATCCACCGTGCCTGATTGTTGTCGCATTGTGCGGTCCTTCATTGAGGATTCAGTTAGCTTCATGTCATATGGCGGGCAGCTTGAGTTCTATGATGTTGTTAAGAAATATTTAGATAAGCTTTTGAGTGAGGTTTTAGATGAAGCTTTGTTAAAGCTTATTAATACCTCGGTTAGTGGTGTCACCCAAGCAATGCAAATGGCAGCAAATATGGCTGTTCTAGAGCGTGCGTGTGATTTTTTCTTTCGCCATGCAGCACAGCTGTCGGGGGTTCCTTTGAGAATGGTAGAAAGAAGCCGGAGGCAATTTCCTCTGAGGAAAGCTCGTGATGCCGCGGAAGAGACACTGTCGGGGCTGCTCAAAGCCAAAGTTGATAGATTTATGACAATGATCGAGAATGTAAATTGGATGTCTGATGATCCGCCCCATGGTGGAAATGAATATGTAAATGAGGTCATACTTTATTTGGAAACTGTGGTTTCAACTACTGCATCACAGATACTGCCAACTCAAGTCCATAAAAGAGTTCTACATGATGTTATTTCTCATATATCGGAGATGATTGTTGGGACTTTAGTTAGTGATTCTGTTAAAAGGTTTAATGTTAGTGCTATTAATGGAATTGATACAGACATCAAGCTCTTAGAATCATTTGTTGAAACTCAGGCAACCCTTTTCTTTGATGGGGATGCTGATCAGTTCAAATCAGCACTTGCTGAGGCGAGGCAAATGGTTAATTTGCTAGTAAGCAACCATCCGGAGAATTTTCTGAATCCAGTGATCAGGGAGAGGAGTTACAGTGCTTTGGACCACAAGAAAGTGGTGATTGTTTCAGAAAAGTTGAAGGATCCTTCGGATAGACTCTTTGGAACCTTTGGTAGTCGAGGGTCCAGGCAGAATCCAAAAAAGAAATCACTGGATACATTGATAAAAAGACTAAGGGATGTTAGTTGA

Protein sequence

>MS.gene22958.t1

MNPSKPPRRKIPQANGDDSGDKLDQLLLSTAISNNEDLGPFIRKAFASGKPETLQQHLKHFARSKESEIEEVCKAHYQDFILAVDDLRSLLSDVESLKSSLSDSNSKLQSVARPLLTSLDSFVETRNVSKNVNLAIDSVESCVQLTEVCSRANAHLAGDNFYMALKCVDAIERDYLDKTASSTLKKMLEKKIPEIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSARQREEDLRIKQRQAEEQSRLSVRDCIYALEEEDEDGMASDDGYINGNINGGGVLGFDLTPLYRAYHIHQTLGLEDGFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFVVEDRVLRTGGGLISKMEVENLWEIAVSKMCSVLEDQFSKMQTANHLLLIKDYVSLLGVTLRRFGYPIDALLDVLSKHRDKYHELLLSDCRKQIAEAIGGDKFEQMLMKKEYEYSMNVLSFQIQTSDIIPAFPYLAPFSSTVPDCCRIVRSFIEDSVSFMSYGGQLEFYDVVKKYLDKLLSEVLDEALLKLINTSVSGVTQAMQMAANMAVLERACDFFFRHAAQLSGVPLRMVERSRRQFPLRKARDAAEETLSGLLKAKVDRFMTMIENVNWMSDDPPHGGNEYVNEVILYLETVVSTTASQILPTQVHKRVLHDVISHISEMIVGTLVSDSVKRFNVSAINGIDTDIKLLESFVETQATLFFDGDADQFKSALAEARQMVNLLVSNHPENFLNPVIRERSYSALDHKKVVIVSEKLKDPSDRLFGTFGSRGSRQNPKKKSLDTLIKRLRDVS