AlfalfaGEDB | MS.gene061160

M. sativa cultivar XinJiangDaYe / MS.gene061160

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061160.t1	XP_003592255.1	89.4	687	51	3	1	665	1	687	0.00E+00	1151

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061160.t1	G7IES3	89.4	687	51	3	1	665	1	687	0.0e+00	1151.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene061160.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene061160	0.818107	2.33E-52	-1.69E-46
MS.gene04918	MS.gene061160	0.828375	9.31E-55	-1.69E-46
MS.gene04919	MS.gene061160	0.81381	2.12E-51	-1.69E-46
MS.gene04920	MS.gene061160	0.836056	1.17E-56	-1.69E-46
MS.gene049283	MS.gene061160	0.832804	7.67E-56	-1.69E-46
MS.gene049368	MS.gene061160	0.809649	1.70E-50	-1.69E-46
MS.gene049499	MS.gene061160	0.848229	7.00E-60	-1.69E-46
MS.gene049983	MS.gene061160	0.807208	5.65E-50	-1.69E-46
MS.gene050945	MS.gene061160	0.832303	1.02E-55	-1.69E-46
MS.gene051003	MS.gene061160	0.850586	1.54E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061160.t1	MTR_1g100810	91.266	687	38	3	1	665	1	687	0.0	1286
MS.gene061160.t1	MTR_6g053660	47.701	696	277	14	1	643	1	662	0.0	550

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061160.t1	AT4G25610	41.489	658	289	21	18	660	6	582	7.56e-139	419
MS.gene061160.t1	AT4G25610	41.489	658	289	21	18	660	6	582	7.56e-139	419
MS.gene061160.t1	AT4G25610	43.423	555	234	17	18	558	6	494	2.00e-122	376

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Find 149 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACTGTATCAATTTC+TGG	0.125076	1.4:+77904594	None:intergenic
AAAATGGCATAGAAGTTAAA+GGG	0.467666	1.4:-77905034	MS.gene061160:CDS
AAACCTGACTCCTTTCATGG+AGG	0.702374	1.4:-77904396	MS.gene061160:CDS
AAACTTACTTTGCGCAAGAA+AGG	0.455459	1.4:+77904128	None:intergenic
AAAGAATCATTTCCGTCTTC+CGG	0.410730	1.4:+77909148	None:intergenic
AAAGGGTGCATCAGAAACAC+AGG	0.634148	1.4:-77905017	MS.gene061160:CDS
AAATTTGATCATCATTTCCA+TGG	0.478816	1.4:+77904277	None:intergenic
AACCATTCCTTTCCTTTCCT+AGG	0.443817	1.4:-77909093	MS.gene061160:CDS
AACCCATGAGTTTCTGAATC+AGG	0.303082	1.4:+77903949	None:intergenic
AACTCTCAAAAGTCTAAGTC+TGG	0.401073	1.4:-77904684	MS.gene061160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCACTGTATCAATTTC+TGG	+	chr1.4:77908445-77908464	None:intergenic	30.0%
AAACAATAAGAGCTGAAAAG+GGG	+	chr1.4:77905709-77905728	None:intergenic	30.0%
AAGATTTATCTGCAATTCTC+AGG	+	chr1.4:77906381-77906400	None:intergenic	30.0%
AATTTGGCAAACCAGAATAT+TGG	-	chr1.4:77908601-77908620	MS.gene061160:intron	30.0%
ATATTGTTAACCAACAGTAC+CGG	-	chr1.4:77906412-77906431	MS.gene061160:intron	30.0%
ATGTGAATTTCCTTTCACAT+AGG	-	chr1.4:77907237-77907256	MS.gene061160:intron	30.0%
ATTAGCATAAATGAAAGTGG+GGG	-	chr1.4:77905316-77905335	MS.gene061160:intron	30.0%
ATTTATTTACAGACAAGCTG+AGG	-	chr1.4:77907916-77907935	MS.gene061160:intron	30.0%
ATTTCCTTTCACATAGGTAA+AGG	-	chr1.4:77907243-77907262	MS.gene061160:intron	30.0%
CAGCAAAAAACAAGAATGAA+TGG	+	chr1.4:77905941-77905960	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	77903840	77909218	77903840	ID=MS.gene061160
chr1.4	mRNA	77903840	77909218	77903840	ID=MS.gene061160.t1;Parent=MS.gene061160
chr1.4	exon	77909032	77909218	77909032	ID=MS.gene061160.t1.exon1;Parent=MS.gene061160.t1
chr1.4	CDS	77909032	77909218	77909032	ID=cds.MS.gene061160.t1;Parent=MS.gene061160.t1
chr1.4	exon	77908669	77908811	77908669	ID=MS.gene061160.t1.exon2;Parent=MS.gene061160.t1
chr1.4	CDS	77908669	77908811	77908669	ID=cds.MS.gene061160.t1;Parent=MS.gene061160.t1
chr1.4	exon	77908483	77908527	77908483	ID=MS.gene061160.t1.exon3;Parent=MS.gene061160.t1
chr1.4	CDS	77908483	77908527	77908483	ID=cds.MS.gene061160.t1;Parent=MS.gene061160.t1
chr1.4	exon	77908140	77908193	77908140	ID=MS.gene061160.t1.exon4;Parent=MS.gene061160.t1
chr1.4	CDS	77908140	77908193	77908140	ID=cds.MS.gene061160.t1;Parent=MS.gene061160.t1
chr1.4	exon	77907150	77907254	77907150	ID=MS.gene061160.t1.exon5;Parent=MS.gene061160.t1
chr1.4	CDS	77907150	77907254	77907150	ID=cds.MS.gene061160.t1;Parent=MS.gene061160.t1
chr1.4	exon	77906844	77907047	77906844	ID=MS.gene061160.t1.exon6;Parent=MS.gene061160.t1
chr1.4	CDS	77906844	77907047	77906844	ID=cds.MS.gene061160.t1;Parent=MS.gene061160.t1
chr1.4	exon	77905714	77905799	77905714	ID=MS.gene061160.t1.exon7;Parent=MS.gene061160.t1
chr1.4	CDS	77905714	77905799	77905714	ID=cds.MS.gene061160.t1;Parent=MS.gene061160.t1
chr1.4	exon	77904136	77905130	77904136	ID=MS.gene061160.t1.exon8;Parent=MS.gene061160.t1
chr1.4	CDS	77904136	77905130	77904136	ID=cds.MS.gene061160.t1;Parent=MS.gene061160.t1
chr1.4	exon	77903840	77904018	77903840	ID=MS.gene061160.t1.exon9;Parent=MS.gene061160.t1
chr1.4	CDS	77903840	77904018	77903840	ID=cds.MS.gene061160.t1;Parent=MS.gene061160.t1

Gene Sequence

>MS.gene061160

ATGCCAGTTGCGAAACTTACTGCTTCAGGTACTCCCAATTTTATGAAACCGGAAGACGGAAATGATTCTTTGGATACATTGATAAGACAAGCGGTTGGAAAAGAACCATTCCTTTCCTTTCCTAGGGCTGGTGGTGACAGGCCAGCACAGTGGATTCAATTATTTCATGCTTTAGAACAGCAACAAGGTATTGCAATAATAAGAAATTTTGGTAATATTATATTGTTTGAATTGAACATCTAAAATCATTAAAATAAAAACCTATCGTTGCATTTGTAACTGAAGTATAGAACACTAGTAGAATTGTATGTAACATGCATATTACTTTAAAGATCATCACCCGTTACTAGTACATTTGATTCCAAACCCAAAATTTTTTCTGATATAATATTTGATTCATTTGGCAGAAATTCCAGGGTGGCCTCTGTTCTCTCCTGCAAAGGTTCAACTACTAAAGTGTGACAAGTGTACCAAAGACAGAGAGTTTTGTTCACCCATTAATTACAGAAGGCATAAACGTGTACACCATCGGTTGAAAAAGCTTGACAAGGTTATCTTTATATCTCATAAGTTGAAGGACTTATCTCATATTGTTGTTCATAGTTTCATGCTTTTGCTGCCAGTGTATTTTCATGTTTACTTCTTTTTCATGTCTTCCTCAATTTGACCTAATGCTTCTTATATATTGTAGGACTCTAAGATAAGTAGGGATCTTTTAGGGGCATATTGGGATAAGGTAATGTTTCATTATTGTCAATTTTACATATATGAAGAAGGCTAATTCTATGGTGCACGAGTAAAATAGTGTTGTACCACGCACACATTAATTTTCCACCATTTGATCAATAAGTCCTATCATATCTCACTTTGATGCAATGGTGGAACTTATTGATCCAAGGGTGAAAACAGACTTGTGAATGGTACAACACCTACTTCACTTCTGCACAATAGAACTAGCCTATGAAGAATGCATCTTATTTTGATGTGCTGATTTTATTTTTATTTTTTTTTCATAATTTGTGCAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGTGTCATTTGAGAATGTGATGTTGGAGGTAAAATCGTTTTGCTCTGTACTTCGCTAGTTTATTTCTTTATATAGTTATTTTAATTTGATTTGCCTTGCGCACGTAATGGTCATATGTCAAATACTCCCTCCGTTTCAAAATGAGTGTCGCTTTAGCCAATTGCACACAGATTAAGGAATGCAATATTGTTATCCAAAGATATGATACTTTTACTAAAATAGCCTCGCTAGTTATTGGTGCATTTGTCATCATTATAAATTAAAGTACAAAATGATACTTTGGAAGTTGCGTGGATATTAATAATTAAGGGTACTATTGGAAAAAAGTAATTAATAGTACATTGAAAAGTGAGAGTGACATTCATTTTGAAACAAATTATTTTTGCTAAAGCGACACTCATTTTGAAACGGGGGGAGTATCTTTTATTAGCATAAATGAAAGTGGGGGGAGGTCGAGTGACACAAGATCTCATACTTTCTTCTTTCTTTCCCTTTTTCACATACTCACTTTTATTCTTTCACACTCTTTCATTTATGCTATACTTTGTATCGTGATTTGTTTGATCATCTTAGTTCTTTCTAATCGTCATATTGGATTTGAAAATGATCCTCTGTTTGTTGAAAGATTAAAGGTACCTTTTCAATGTGAATATGATTTTTAAACACGTTCTTTGTCCTTCTTGTCTGGAAATAATATATATATATAAACACCCACACACACAAAGACATAGTAGTCTTAATGTTGTTTGAAATTGAAAGTTTTTCAAAGACGGGTTACATATACAATTACAAAGTCATAGCAGTCTCTCACTGTTCCCCTTTTCAGCTCTTATTGTTTTCTAGTTTTACTTTTTTCCCTAATTAATCTAAATATATTGTATTCTTGTCTTCCCCCACCGAAAATGCTTTCCAGGAGGTTCCAGGGTCTTCAATTGTACAAGCTCTCTCAACTCTTCGAACACAACAAGGATTTTACTCTTTTCCACAGTATTATCTCAGGGCTGGTTTCTCCCTTTTGGTAAGAAATATTGCTGTCGTACTTATCAACCATTCATTCTTGTTTTTTGCTGCATATATTCTTTAGGTTTATTAATGCAATATATATCTACATTATTTGCAGGATATTGTTCAATCCAGGCCTTCTAGTTTTCCTATATCTTCCCAAAAGTTGTTCAATATTCTCGATGATTCCAGTGAAAATACATTTTTATGTGGAACAGCAGTGTCAATGCAAAGACATGTTTTTGATGGAGAGGCTGGAAAGATTGGGCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAATTGGTAATGGTTTTTCCTAGCTTCAAAAACTTTTCCCTTTTATAGTAAAAATATTTTTCTTTCCTCTCTGTCTCTCTCTCTCTCTCATGTGTTTTGTTCAATACTTGATGTTGAGGATGTGTTTCTTGTGCTTTGTTTAAGAAGATTGATTCATCACTAGGATATACCTGAGAATTGCAGATAAATCTTGCATGATAATAATATTGTTAACCAACAGTACCGGGTGTATAATTTGTTATTCTATGGTTTTTGCCACACTTCCCTCTTGTTTGGGGAAGTTTGAAGGCTGACACTGATTTTATTGTTTGGGTATCTGTAAGTTTGGTTTATGTCTTTATTTTTTTTCAAACCTCGGCATGATATTGCACGAGGGTCATGTTAATGATAGTAAGACCAAGCCATTAAAGAGACTTCACCAAATAGCAGGCCACTGGCTAGTGTGGTCAAATACACTCTTCATTTATAGCTATTGTTAGCTATGTACAAAGGGTTATTCAACCAGATTTCTATTCTATATTATTGGCATAATAGTATTAGGTTAGTTTTCATTATCACTCTTCCCTTTGGCTTCTTCACGGGAAGGTTGTACCAGGGCATGAAATGAACCATGAGGCGACTCTGTCCCTGGCATCCCTTTCCGCCCCCATATTTAATCGTATTTTGTTCTTTAAATAATTGTCATGAAAAGGATCTAAAATATTAGTTTATGTACACTAAAAAATCTATAGTTCTTTCTTGATTGAGAGTTTACATATGTCAAGAAAAGAACCGAGTAGAAAGGGAAAATGAATCTGGAATAATATTTCAATATCTAAGGCTGCTAAAAAACTTATATGATTCTGATGCATATTCTCTTTTTAGGAGTTATCAATTAACACATGAGTCCAGCAAATAGCTACATAGGATGTCATGTGATTTGATTTTGAAGAATAAAAATGTGCTAGTTGAACTGAAGTTCATAGCACATCCTCTGTTCATACTCAAACATTAAACATGATTCTATTCTTAACTACATTTGTGATAAAATGTGAATTTCCTTTCACATAGGTAAAGGCGTGGCTTGCAGACAAAGATGCCGAAGCATTGAAATGCCAGAAGCTGCTGGTGGAGGAGGAGGAAGCTGCTCAAAGAAGGTATCAGTTCTTGTTCTTCTGTCCTGTGTGATTCATGAGTTTCATTTCCACTTTTAGGTTGCGAGGAATTGCAAATATTTCAAGAGTTAATTGGGTTGAAATAGATATATACAAATTTGCAGTGTAATATTCAATCCATTTTTCCATTTGTTAACAATGTTTGTCTTGGGTGCATGTTTTTTATCACCCTCTTTTACATTACCAGTCACCTTGACTTAATGGACATTTAGGACTTCGAGTGGAGCTTAACTTTCTTGTAATTTTTAATAGGTGAAATAAGGGAATTCATATAATAACAAAACCTGTATGGTAAGAAATGACGCATTTTCTTTTTCTTTGATTTCATACGCAATTTTCTAAGTACTTTGTTAACTTATTTTTCTATTGTGTTATTTATAAATGAATGATAATGCGTTTCTTAGTTACACAATTAATCAACAAAATAGTAATTGTTCAACTTGTTGATTTAGCAAATTCAAAAAGTGCTAAAGATGTTGGCGAAAATGTACTCCCACGTGATAGTTGTGAACTAGTCATTATGGATAATATATTTATTTTATATTGTCCCTTTATTTATTTACAGACAAGCTGAGGCTTTGGAGAGAAAACGCTTGAAAAAGCTTAGGCTTAAAGAACAAAAGGCGAGGGACCAACTTGAAAATGGCATAGAAGTTAAAGGGTGCATCAGAAACACAGGAGAGGAGATATCGCGAGAGGAACCATCTTTGGCTGCATGTGACTTTGATGCACATGTAACTTATCATTTCCCAGACACCAATGAAGGTGTAGATGAGGATACACAATTAGCATATGATTGTGACACTGATCAGAACGTGGAGCCACAAACATTACAATCAGATGCACAGTCAGGTTATGATTGTGACATTAATCGGAATTTAGAGAGACAAACATCACATAGACATAATCCTCGACGCACAATGGCTGCCAGACGGCTAAGGCATCCTAAGTCGCAACGTACTATTGTCAATGGTTTGCATGCAAGCCAAAACTCTCAAAAGTCTAAGTCTGGAGTCATTCCAAAATATGGAAATGGAACCAGCCGTGATAGTGGTAAAGTTTGGAGCCGGAAACCTAAACCAGAAATTGATACAGTGGTTTTAAAACCCAAATTGCACAAAGAACCAGATGAAGTTAAGACTCACGAAGTTTTGATTGGATCTGTATCTGTTACACTAGTCAATTGCAGCCAATCAGAGAATAATCTTGTCACATCTCAAGCGAACAACTTCGTAGAGAATTTGGCAAACCAGAATATTGGTCAGGAGAAGCCAATTAAACCTGACTCCTTTCATGGAGGCAACAATCAGTCAGGAGTTAAGCTTTGGAGACCAGTGAGCCAGCATGAAACTAAAAATCCACCACTTCAAAGTGTTGAGACAGAAGTTGACGTAGTCCATGGAAATGATGATCAAATTTTGTCGGTGCAAAGTAATTTAAGGTTGTGTGATATAGATGGATGCAATATGGGTTATGGGAACAAATCTCACGTCGGGACAAAAGCAGATTCAGAAGGCTTTCGGTTGTCCAGCGATGCTGCAAAAGCCTTTCTTGCGCAAAGTAAGTTTTACCAATTTATACATATAAATTTTCTTATATTATTATGTTTTATTGAAACTATGCATGGCTTGGTTGTTAGTTGCTCTATTTAAATATCCACCAACAATTTTTATGCAGGATGGAAAGAAGCAATTTCGTCACATCATGTGGAATTAGTTATTTCACCTGATTCAGAAACTCATGGGTTCAAACCAGTCAAGGATTGTGCAACATCGGTTGCTAAATCCAAACCTAGAATGAGGCCTGAGAAAGGAATCAAGATAAAGTACATTCCAAGACTAAAAGCTGCAGCATAA

Protein sequence

>MS.gene061160.t1

MPVAKLTASGTPNFMKPEDGNDSLDTLIRQAVGKEPFLSFPRAGGDRPAQWIQLFHALEQQQEIPGWPLFSPAKVQLLKCDKCTKDREFCSPINYRRHKRVHHRLKKLDKDSKISRDLLGAYWDKLSVEEAKEVVSFENVMLEEVPGSSIVQALSTLRTQQGFYSFPQYYLRAGFSLLDIVQSRPSSFPISSQKLFNILDDSSENTFLCGTAVSMQRHVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALKCQKLLVEEEEAAQRRQAEALERKRLKKLRLKEQKARDQLENGIEVKGCIRNTGEEISREEPSLAACDFDAHVTYHFPDTNEGVDEDTQLAYDCDTDQNVEPQTLQSDAQSGYDCDINRNLERQTSHRHNPRRTMAARRLRHPKSQRTIVNGLHASQNSQKSKSGVIPKYGNGTSRDSGKVWSRKPKPEIDTVVLKPKLHKEPDEVKTHEVLIGSVSVTLVNCSQSENNLVTSQANNFVENLANQNIGQEKPIKPDSFHGGNNQSGVKLWRPVSQHETKNPPLQSVETEVDVVHGNDDQILSVQSNLRLCDIDGCNMGYGNKSHVGTKADSEGFRLSSDAAKAFLAQRWKEAISSHHVELVISPDSETHGFKPVKDCATSVAKSKPRMRPEKGIKIKYIPRLKAAA