Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23218.t1 | RHN51483.1 | 92.9 | 85 | 6 | 0 | 95 | 179 | 505 | 589 | 1.30E-37 | 166.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23218.t1 | A0A072TKK1 | 92.9 | 85 | 6 | 0 | 95 | 179 | 287 | 371 | 9.4e-38 | 166.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054124 | MS.gene23218 | 0.819442 | 1.16E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene23218 | -0.803269 | 3.78E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene23218 | 0.800638 | 1.31E-48 | -1.69E-46 |
| MS.gene056168 | MS.gene23218 | 0.800206 | 1.61E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene23218 | 0.815412 | 9.37E-52 | -1.69E-46 |
| MS.gene059584 | MS.gene23218 | 0.814279 | 1.67E-51 | -1.69E-46 |
| MS.gene060553 | MS.gene23218 | 0.800726 | 1.26E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23218.t1 | MTR_5g077900 | 92.941 | 85 | 6 | 0 | 95 | 179 | 113 | 197 | 3.47e-52 | 167 |
| MS.gene23218.t1 | MTR_7g046380 | 92.941 | 85 | 6 | 0 | 95 | 179 | 295 | 379 | 9.39e-52 | 171 |
| MS.gene23218.t1 | MTR_0002s1270 | 92.941 | 85 | 6 | 0 | 95 | 179 | 287 | 371 | 3.62e-51 | 169 |
| MS.gene23218.t1 | MTR_3g061490 | 50.000 | 118 | 15 | 1 | 21 | 94 | 17 | 134 | 8.69e-24 | 96.7 |
| MS.gene23218.t1 | MTR_2g092960 | 41.860 | 86 | 49 | 1 | 95 | 179 | 1105 | 1190 | 2.92e-15 | 73.6 |
| MS.gene23218.t1 | MTR_4g066300 | 83.784 | 37 | 6 | 0 | 146 | 182 | 5 | 41 | 8.31e-15 | 66.2 |
| MS.gene23218.t1 | MTR_0057s0200 | 90.000 | 30 | 3 | 0 | 150 | 179 | 1 | 30 | 1.40e-13 | 63.2 |
| MS.gene23218.t1 | MTR_4g066320 | 81.818 | 33 | 6 | 0 | 147 | 179 | 59 | 91 | 2.87e-13 | 63.9 |
| MS.gene23218.t1 | MTR_8g017000 | 39.560 | 91 | 52 | 2 | 95 | 182 | 573 | 663 | 4.06e-12 | 64.3 |
| MS.gene23218.t1 | MTR_2g037270 | 39.560 | 91 | 52 | 2 | 95 | 182 | 573 | 663 | 5.50e-12 | 63.9 |
| MS.gene23218.t1 | MTR_0462s0020 | 38.095 | 84 | 50 | 1 | 95 | 176 | 180 | 263 | 1.43e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23218.t1 | AT3G20920 | 68.519 | 54 | 17 | 0 | 40 | 93 | 83 | 136 | 4.94e-18 | 80.9 |
| MS.gene23218.t1 | AT3G20920 | 68.519 | 54 | 17 | 0 | 40 | 93 | 84 | 137 | 5.07e-18 | 80.9 |
Find 33 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATTATGGTCTCAGCTTC+AGG | 0.248046 | 7.3:-53884469 | None:intergenic |
| CATCCAAGACTTAGCAATAT+TGG | 0.309115 | 7.3:+53882038 | None:intergenic |
| TCATTGCTTCATTAAGATCT+TGG | 0.330442 | 7.3:+53882410 | None:intergenic |
| TGGTTAACACAGAGCTTTAG+AGG | 0.331097 | 7.3:-53882291 | MS.gene23218:intron |
| ACAGATACTGGTAGTCCATT+AGG | 0.332515 | 7.3:+53884421 | None:intergenic |
| GCAATAGAAAGAAGGCTAAA+TGG | 0.337305 | 7.3:-53882250 | MS.gene23218:CDS |
| TATCCACAATCATTGACATT+AGG | 0.374149 | 7.3:+53882096 | None:intergenic |
| TTGACATTAGGTTGCTTCCT+TGG | 0.395250 | 7.3:+53882108 | None:intergenic |
| AGAGGTTCATCAACTTGCTC+AGG | 0.406730 | 7.3:-53882273 | MS.gene23218:CDS |
| GACAACTAAACTATTGTCCT+TGG | 0.409668 | 7.3:+53882447 | None:intergenic |
| CAGATACTGGTAGTCCATTA+GGG | 0.437211 | 7.3:+53884422 | None:intergenic |
| CAGCTTCAGGGCAACTGTAT+TGG | 0.438524 | 7.3:-53884456 | MS.gene23218:CDS |
| TGGTATATGTCAGTCCCTAA+TGG | 0.443724 | 7.3:-53884436 | MS.gene23218:CDS |
| TGTGACGAAGGATGTGTATC+AGG | 0.455029 | 7.3:-53883652 | MS.gene23218:CDS |
| CTGCCAATATTGCTAAGTCT+TGG | 0.481535 | 7.3:-53882041 | MS.gene23218:CDS |
| CAACCTAATGTCAATGATTG+TGG | 0.494989 | 7.3:-53882099 | MS.gene23218:CDS |
| TGATTATGATGTGGCTGAGA+TGG | 0.505726 | 7.3:-53881650 | MS.gene23218:CDS |
| GTTAATAATTATTTGTCCCA+AGG | 0.509187 | 7.3:-53882464 | MS.gene23218:CDS |
| ACAACTAAACTATTGTCCTT+GGG | 0.519949 | 7.3:+53882448 | None:intergenic |
| AATGATGGTGATACAGATAC+TGG | 0.523880 | 7.3:+53884409 | None:intergenic |
| GGGAAAATTTCTAAATGAGT+AGG | 0.532240 | 7.3:+53883501 | None:intergenic |
| TGCTCAGGGCAATAGAAAGA+AGG | 0.548493 | 7.3:-53882258 | MS.gene23218:CDS |
| GATTATGATGTGGCTGAGAT+GGG | 0.552282 | 7.3:-53881649 | MS.gene23218:CDS |
| GAGGTTCATCAACTTGCTCA+GGG | 0.558482 | 7.3:-53882272 | MS.gene23218:CDS |
| AGATTATGGTCTCAGCTTCA+GGG | 0.563313 | 7.3:-53884468 | None:intergenic |
| TCAGAAACAAGCTGTGACGA+AGG | 0.577069 | 7.3:-53883664 | MS.gene23218:intron |
| TGTATCACCATCATTCACTC+TGG | 0.579035 | 7.3:-53884401 | MS.gene23218:CDS |
| CAATATTGCTAAGTCTTGGA+TGG | 0.592717 | 7.3:-53882037 | MS.gene23218:CDS |
| GATCTTGGTGCATTGAACAA+AGG | 0.604500 | 7.3:+53882425 | None:intergenic |
| TTTAGTTTGCTGTGATCGTG+TGG | 0.636688 | 7.3:-53883565 | MS.gene23218:CDS |
| TATTGCTAAGTCTTGGATGG+AGG | 0.647289 | 7.3:-53882034 | MS.gene23218:intron |
| TTTGCAGCCAGAGTGAATGA+TGG | 0.680510 | 7.3:+53884394 | None:intergenic |
| GCTGAAAATTGATTATGATG+TGG | 0.703535 | 7.3:-53881659 | MS.gene23218:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTATTATATATATATGAT+AGG | - | chr7.3:53881848-53881867 | MS.gene23218:intron | 10.0% |
| !!! | TTTTTATTTTGTTAAATACT+AGG | + | chr7.3:53883377-53883396 | None:intergenic | 10.0% |
| !! | AACTAATCACTATATAAAAA+TGG | - | chr7.3:53883954-53883973 | MS.gene23218:intron | 15.0% |
| !! | AATAAGGATATGTTTATATT+TGG | + | chr7.3:53884132-53884151 | None:intergenic | 15.0% |
| !! | TATACTTACTTAAATAGATA+TGG | + | chr7.3:53883544-53883563 | None:intergenic | 15.0% |
| !! | TGATATTAATGTTAATGAAT+TGG | - | chr7.3:53881811-53881830 | MS.gene23218:intron | 15.0% |
| !!! | CTTTGATGATTTTTTTAATT+TGG | - | chr7.3:53883788-53883807 | MS.gene23218:intron | 15.0% |
| !!! | TATTGTATTATGTAGTTTTT+AGG | - | chr7.3:53883433-53883452 | MS.gene23218:intron | 15.0% |
| !!! | TTTTCTATGTTCAAAATTTA+TGG | - | chr7.3:53882784-53882803 | MS.gene23218:intron | 15.0% |
| !! | AAATAGTTAATTAGAAGACT+TGG | - | chr7.3:53882282-53882301 | MS.gene23218:CDS | 20.0% |
| !! | AAATTATGTCAAAAGAAAGA+TGG | + | chr7.3:53883025-53883044 | None:intergenic | 20.0% |
| !! | GTTAGTAATATTATTGTGTT+TGG | + | chr7.3:53881754-53881773 | None:intergenic | 20.0% |
| !!! | AAACATCCTTTAAAAATTGA+TGG | - | chr7.3:53883404-53883423 | MS.gene23218:intron | 20.0% |
| !!! | ATTATGTAGTTTTTAGGTTT+AGG | - | chr7.3:53883439-53883458 | MS.gene23218:intron | 20.0% |
| !!! | CTGAATTTGTTTATTTTAAC+AGG | - | chr7.3:53882334-53882353 | MS.gene23218:intron | 20.0% |
| ! | ACGTAGAAGAACAATTATTA+AGG | + | chr7.3:53883610-53883629 | None:intergenic | 25.0% |
| ! | AGCAAGAAAAATTACTTACA+GGG | + | chr7.3:53882621-53882640 | None:intergenic | 25.0% |
| ! | ATGGAAAACGTGAATAATTA+TGG | + | chr7.3:53883006-53883025 | None:intergenic | 25.0% |
| ! | ATGTTAATGAATTGGATTGT+TGG | - | chr7.3:53881819-53881838 | MS.gene23218:intron | 25.0% |
| ! | CAAATGTCAAATTATGAGAT+TGG | + | chr7.3:53884306-53884325 | None:intergenic | 25.0% |
| ! | GTTAATAATTATTTGTCCCA+AGG | - | chr7.3:53883635-53883654 | MS.gene23218:CDS | 25.0% |
| ! | TAATAATTGTTCTTCTACGT+TGG | - | chr7.3:53883610-53883629 | MS.gene23218:CDS | 25.0% |
| ! | TATATTAACCTACACATTGT+AGG | - | chr7.3:53884165-53884184 | MS.gene23218:intron | 25.0% |
| ! | TGTTAATGAATTGGATTGTT+GGG | - | chr7.3:53881820-53881839 | MS.gene23218:intron | 25.0% |
| !! | ACTGATCCATCAATTTTTAA+AGG | + | chr7.3:53883413-53883432 | None:intergenic | 25.0% |
| !! | GTATTTTCATAGTTAAAGTG+CGG | + | chr7.3:53883282-53883301 | None:intergenic | 25.0% |
| !! | TATTTTCATAGTTAAAGTGC+GGG | + | chr7.3:53883281-53883300 | None:intergenic | 25.0% |
| !!! | AACTTCATAGTCATTTTTAG+TGG | - | chr7.3:53881771-53881790 | MS.gene23218:intron | 25.0% |
| !!! | GTTATACATTTTAGTGTTGT+AGG | + | chr7.3:53883769-53883788 | None:intergenic | 25.0% |
| !!! | TGTTGTTGTTATGATGTTTT+TGG | - | chr7.3:53882409-53882428 | MS.gene23218:CDS | 25.0% |
| AAAAAAAGTGGCCAATAATG+TGG | + | chr7.3:53882898-53882917 | None:intergenic | 30.0% | |
| AAATTTATGGTCACTACCAT+TGG | - | chr7.3:53882797-53882816 | MS.gene23218:intron | 30.0% | |
| AATCTACACCATACTTACTT+TGG | + | chr7.3:53883882-53883901 | None:intergenic | 30.0% | |
| ACAACTAAACTATTGTCCTT+GGG | + | chr7.3:53883654-53883673 | None:intergenic | 30.0% | |
| ACCAATATGTTGAGGTATAT+AGG | - | chr7.3:53882239-53882258 | MS.gene23218:CDS | 30.0% | |
| AGAATCTACAATGAACCAAA+AGG | + | chr7.3:53881966-53881985 | None:intergenic | 30.0% | |
| ATAATTATGGTAGCAAGACT+TGG | + | chr7.3:53882993-53883012 | None:intergenic | 30.0% | |
| ATCATATATGTGTTTGCATG+TGG | - | chr7.3:53882682-53882701 | MS.gene23218:intron | 30.0% | |
| ATCTACACCATACTTACTTT+GGG | + | chr7.3:53883881-53883900 | None:intergenic | 30.0% | |
| ATTGAATACCTACAATGTGT+AGG | + | chr7.3:53884176-53884195 | None:intergenic | 30.0% | |
| CAGCAAGAAAAATTACTTAC+AGG | + | chr7.3:53882622-53882641 | None:intergenic | 30.0% | |
| GATCTAATGAACCACATTAT+TGG | - | chr7.3:53882884-53882903 | MS.gene23218:intron | 30.0% | |
| GCTGAAAATTGATTATGATG+TGG | - | chr7.3:53884440-53884459 | MS.gene23218:CDS | 30.0% | |
| GGAATAATTACAAAGACCAA+TGG | + | chr7.3:53882816-53882835 | None:intergenic | 30.0% | |
| GGGAAAATTTCTAAATGAGT+AGG | + | chr7.3:53882601-53882620 | None:intergenic | 30.0% | |
| TATAACGCTTAGGATTTACA+TGG | - | chr7.3:53884268-53884287 | MS.gene23218:intron | 30.0% | |
| TATCCACAATCATTGACATT+AGG | + | chr7.3:53884006-53884025 | None:intergenic | 30.0% | |
| TCATCTTCAATTAATGTCGT+TGG | + | chr7.3:53884202-53884221 | None:intergenic | 30.0% | |
| TCATTGCTTCATTAAGATCT+TGG | + | chr7.3:53883692-53883711 | None:intergenic | 30.0% | |
| TGAATTGTACCAATATGTTG+AGG | - | chr7.3:53882231-53882250 | MS.gene23218:intron | 30.0% | |
| TTTGCTTAACCTTTGAATAG+AGG | + | chr7.3:53882751-53882770 | None:intergenic | 30.0% | |
| ! | AGAGAGAGTAGAATTTTGAA+CGG | - | chr7.3:53884327-53884346 | MS.gene23218:intron | 30.0% |
| ! | TGCTGCTTATGATATCAAAA+CGG | + | chr7.3:53881999-53882018 | None:intergenic | 30.0% |
| ! | TTTTAACCGTTTGATTCAGT+AGG | + | chr7.3:53881876-53881895 | None:intergenic | 30.0% |
| !! | TAAGAGATTTCTAGCTAGTA+GGG | - | chr7.3:53883095-53883114 | MS.gene23218:intron | 30.0% |
| !!! | ATTTTTTACATACGTGGGTA+TGG | + | chr7.3:53883165-53883184 | None:intergenic | 30.0% |
| !!! | TTTTTTACATACGTGGGTAT+GGG | + | chr7.3:53883164-53883183 | None:intergenic | 30.0% |
| AGTATATTTCTTGCGCTTTG+TGG | - | chr7.3:53882720-53882739 | MS.gene23218:intron | 35.0% | |
| CAACCTAATGTCAATGATTG+TGG | - | chr7.3:53884000-53884019 | MS.gene23218:intron | 35.0% | |
| CAAGGATAAGAACTAAGAAG+TGG | - | chr7.3:53881904-53881923 | MS.gene23218:intron | 35.0% | |
| CAATATTGCTAAGTCTTGGA+TGG | - | chr7.3:53884062-53884081 | MS.gene23218:intron | 35.0% | |
| CATCCAAGACTTAGCAATAT+TGG | + | chr7.3:53884064-53884083 | None:intergenic | 35.0% | |
| CTTGTATCTGTCTTAATGTG+TGG | - | chr7.3:53884351-53884370 | MS.gene23218:intron | 35.0% | |
| GACAACTAAACTATTGTCCT+TGG | + | chr7.3:53883655-53883674 | None:intergenic | 35.0% | |
| GCAATAGAAAGAAGGCTAAA+TGG | - | chr7.3:53883849-53883868 | MS.gene23218:intron | 35.0% | |
| GCCTATATACCTCAACATAT+TGG | + | chr7.3:53882243-53882262 | None:intergenic | 35.0% | |
| GTGGTTATTCCTCTATTCAA+AGG | - | chr7.3:53882739-53882758 | MS.gene23218:intron | 35.0% | |
| TAGGAACCTACTGAATCAAA+CGG | - | chr7.3:53881867-53881886 | MS.gene23218:intron | 35.0% | |
| TCATCCTTCGTGTATTATGA+TGG | - | chr7.3:53882133-53882152 | MS.gene23218:intron | 35.0% | |
| TTAGCCATCATAATACACGA+AGG | + | chr7.3:53882140-53882159 | None:intergenic | 35.0% | |
| ! | AATGATGGTGATACAGATAC+TGG | + | chr7.3:53881693-53881712 | None:intergenic | 35.0% |
| ! | GTATGATTTGCGAAACCAAT+GGG | - | chr7.3:53884225-53884244 | MS.gene23218:intron | 35.0% |
| ! | TGTATGATTTGCGAAACCAA+TGG | - | chr7.3:53884224-53884243 | MS.gene23218:intron | 35.0% |
| ! | TTTTTACATACGTGGGTATG+GGG | + | chr7.3:53883163-53883182 | None:intergenic | 35.0% |
| !! | CTAAGAGATTTCTAGCTAGT+AGG | - | chr7.3:53883094-53883113 | MS.gene23218:intron | 35.0% |
| !! | TCTTGACTTGTATAACGCTT+AGG | - | chr7.3:53884258-53884277 | MS.gene23218:intron | 35.0% |
| !!! | ACGGGTATTTTTTACATACG+TGG | + | chr7.3:53883171-53883190 | None:intergenic | 35.0% |
| !!! | CGGGTATTTTTTACATACGT+GGG | + | chr7.3:53883170-53883189 | None:intergenic | 35.0% |
| !!! | GAAAGTGAGTTTTGAAACAG+AGG | - | chr7.3:53882480-53882499 | MS.gene23218:intron | 35.0% |
| AATTATTCCTCTGCCTGACA+TGG | - | chr7.3:53882827-53882846 | MS.gene23218:intron | 40.0% | |
| ACAGATACTGGTAGTCCATT+AGG | + | chr7.3:53881681-53881700 | None:intergenic | 40.0% | |
| ACGGTTAAAAGACAGAGTCA+AGG | - | chr7.3:53881886-53881905 | MS.gene23218:intron | 40.0% | |
| ATGTGGTTCATTAGATCAGC+AGG | + | chr7.3:53882881-53882900 | None:intergenic | 40.0% | |
| ATTATTCCTCTGCCTGACAT+GGG | - | chr7.3:53882828-53882847 | MS.gene23218:intron | 40.0% | |
| CAAGAAAACAAGTTGCCCAT+TGG | + | chr7.3:53884243-53884262 | None:intergenic | 40.0% | |
| CAGATACTGGTAGTCCATTA+GGG | + | chr7.3:53881680-53881699 | None:intergenic | 40.0% | |
| CAGCTACGTAACTACTTACA+TGG | + | chr7.3:53883064-53883083 | None:intergenic | 40.0% | |
| CATAGTTAAAGTGCGGGTAA+TGG | + | chr7.3:53883275-53883294 | None:intergenic | 40.0% | |
| CTGCCAATATTGCTAAGTCT+TGG | - | chr7.3:53884058-53884077 | MS.gene23218:intron | 40.0% | |
| CTTCCTTGGCTACAAATGAA+TGG | + | chr7.3:53883980-53883999 | None:intergenic | 40.0% | |
| GATTATGATGTGGCTGAGAT+GGG | - | chr7.3:53884450-53884469 | MS.gene23218:CDS | 40.0% | |
| GGAAGAAAAAGCTGTCTACT+TGG | - | chr7.3:53882575-53882594 | MS.gene23218:intron | 40.0% | |
| GTATCTGTCTTAATGTGTGG+TGG | - | chr7.3:53884354-53884373 | MS.gene23218:intron | 40.0% | |
| GTTTCGTCCCAAAGTAAGTA+TGG | - | chr7.3:53883871-53883890 | MS.gene23218:intron | 40.0% | |
| TATTGCTAAGTCTTGGATGG+AGG | - | chr7.3:53884065-53884084 | MS.gene23218:intron | 40.0% | |
| TGATTATGATGTGGCTGAGA+TGG | - | chr7.3:53884449-53884468 | MS.gene23218:CDS | 40.0% | |
| TGGTAAAAACTCTTCGTCCT+GGG | - | chr7.3:53882554-53882573 | MS.gene23218:intron | 40.0% | |
| TGGTATATGTCAGTCCCTAA+TGG | - | chr7.3:53881663-53881682 | MS.gene23218:intron | 40.0% | |
| TGTATCACCATCATTCACTC+TGG | - | chr7.3:53881698-53881717 | MS.gene23218:intron | 40.0% | |
| ! | ACAATGAACCAAAAGGCACA+TGG | + | chr7.3:53881959-53881978 | None:intergenic | 40.0% |
| ! | ACATAATGCCATGTGCCTTT+TGG | - | chr7.3:53881948-53881967 | MS.gene23218:intron | 40.0% |
| ! | GATCTTGGTGCATTGAACAA+AGG | + | chr7.3:53883677-53883696 | None:intergenic | 40.0% |
| ! | GTCTTAATGTGTGGTGGTTT+TGG | - | chr7.3:53884360-53884379 | MS.gene23218:intron | 40.0% |
| ! | TGGTTAACACAGAGCTTTAG+AGG | - | chr7.3:53883808-53883827 | MS.gene23218:intron | 40.0% |
| ! | TTGACATTAGGTTGCTTCCT+TGG | + | chr7.3:53883994-53884013 | None:intergenic | 40.0% |
| !! | AGATTTCTAGCTAGTAGGGA+TGG | - | chr7.3:53883099-53883118 | MS.gene23218:intron | 40.0% |
| !! | GTGTGGCTGTCTTATTCTTT+TGG | - | chr7.3:53882920-53882939 | MS.gene23218:intron | 40.0% |
| !! | TTTAGTTTGCTGTGATCGTG+TGG | - | chr7.3:53882534-53882553 | MS.gene23218:intron | 40.0% |
| ACAGCCACACGCAAAAAAAG+TGG | + | chr7.3:53882910-53882929 | None:intergenic | 45.0% | |
| ACTAAAGTTGTTGCCCACGA+GGG | + | chr7.3:53883207-53883226 | None:intergenic | 45.0% | |
| ACTGTAGTACCCTACCCATA+GGG | + | chr7.3:53883134-53883153 | None:intergenic | 45.0% | |
| CAGGTCATTCTTTCTCACCA+TGG | + | chr7.3:53882862-53882881 | None:intergenic | 45.0% | |
| GTGGTAAAAACTCTTCGTCC+TGG | - | chr7.3:53882553-53882572 | MS.gene23218:intron | 45.0% | |
| TAGCTAGTAGGGATGGCAAT+GGG | - | chr7.3:53883106-53883125 | MS.gene23218:intron | 45.0% | |
| TCAGAAACAAGCTGTGACGA+AGG | - | chr7.3:53882435-53882454 | MS.gene23218:CDS | 45.0% | |
| TGCTCAGGGCAATAGAAAGA+AGG | - | chr7.3:53883841-53883860 | MS.gene23218:intron | 45.0% | |
| TGGCCATTCATTTGTAGCCA+AGG | - | chr7.3:53883974-53883993 | MS.gene23218:intron | 45.0% | |
| TGTGACGAAGGATGTGTATC+AGG | - | chr7.3:53882447-53882466 | MS.gene23218:CDS | 45.0% | |
| TTCTTTCTCACCATGGCACA+TGG | + | chr7.3:53882855-53882874 | None:intergenic | 45.0% | |
| TTTGCAGCCAGAGTGAATGA+TGG | + | chr7.3:53881708-53881727 | None:intergenic | 45.0% | |
| ! | AGAGGTTCATCAACTTGCTC+AGG | - | chr7.3:53883826-53883845 | MS.gene23218:intron | 45.0% |
| ! | GAGGTTCATCAACTTGCTCA+GGG | - | chr7.3:53883827-53883846 | MS.gene23218:intron | 45.0% |
| !! | GTAGACAGCTTTTTCTTCCC+AGG | + | chr7.3:53882574-53882593 | None:intergenic | 45.0% |
| !! | TAAAGTGCGGGTAATGGATG+CGG | + | chr7.3:53883269-53883288 | None:intergenic | 45.0% |
| !!! | TTGGCCACTTTTTTTGCGTG+TGG | - | chr7.3:53882903-53882922 | MS.gene23218:intron | 45.0% |
| !! | ATAAGTAATTAATATTAATA+AGG | + | chr7.3:53884148-53884167 | None:intergenic | 5.0% |
| ACATACGTGGGTATGGGGAA+GGG | + | chr7.3:53883158-53883177 | None:intergenic | 50.0% | |
| CAATGGGTACCCTATGGGTA+GGG | - | chr7.3:53883122-53883141 | MS.gene23218:intron | 50.0% | |
| CACTAAAGTTGTTGCCCACG+AGG | + | chr7.3:53883208-53883227 | None:intergenic | 50.0% | |
| CACTGTAGTACCCTACCCAT+AGG | + | chr7.3:53883135-53883154 | None:intergenic | 50.0% | |
| CAGCTTCAGGGCAACTGTAT+TGG | - | chr7.3:53881643-53881662 | MS.gene23218:CDS | 50.0% | |
| CTAGCTAGTAGGGATGGCAA+TGG | - | chr7.3:53883105-53883124 | MS.gene23218:intron | 50.0% | |
| GATGGCAATGGGTACCCTAT+GGG | - | chr7.3:53883117-53883136 | MS.gene23218:intron | 50.0% | |
| TACATACGTGGGTATGGGGA+AGG | + | chr7.3:53883159-53883178 | None:intergenic | 50.0% | |
| TGGCTGCAAATGCTGAAGTG+AGG | - | chr7.3:53881718-53881737 | MS.gene23218:intron | 50.0% | |
| !! | AAAGTGCGGGTAATGGATGC+GGG | + | chr7.3:53883268-53883287 | None:intergenic | 50.0% |
| AGTTGTTGCCCACGAGGGTA+TGG | + | chr7.3:53883202-53883221 | None:intergenic | 55.0% | |
| ATGGCACATGGACCCATGTC+AGG | + | chr7.3:53882843-53882862 | None:intergenic | 55.0% | |
| GCAATGGGTACCCTATGGGT+AGG | - | chr7.3:53883121-53883140 | MS.gene23218:intron | 55.0% | |
| GGATGGCAATGGGTACCCTA+TGG | - | chr7.3:53883116-53883135 | MS.gene23218:intron | 55.0% | |
| TGACATGGGTCCATGTGCCA+TGG | - | chr7.3:53882842-53882861 | MS.gene23218:intron | 55.0% | |
| TGCCCTTCCCCATACCCTAT+GGG | - | chr7.3:53883226-53883245 | MS.gene23218:intron | 55.0% | |
| ! | ACTAAGGCGCCCATAGGGTA+TGG | + | chr7.3:53883238-53883257 | None:intergenic | 55.0% |
| ! | CTAAGGCGCCCATAGGGTAT+GGG | + | chr7.3:53883237-53883256 | None:intergenic | 55.0% |
| ! | GTTGTTGCCCACGAGGGTAT+GGG | + | chr7.3:53883201-53883220 | None:intergenic | 55.0% |
| ! | TAAGGCGCCCATAGGGTATG+GGG | + | chr7.3:53883236-53883255 | None:intergenic | 55.0% |
| !! | CGGGTAATGGATGCGGGTAT+GGG | + | chr7.3:53883262-53883281 | None:intergenic | 55.0% |
| ACCCGAACCCATACCCTCGT+GGG | - | chr7.3:53883191-53883210 | MS.gene23218:intron | 60.0% | |
| CATGGACCCATGTCAGGCAG+AGG | + | chr7.3:53882837-53882856 | None:intergenic | 60.0% | |
| CGCCCATAGGGTATGGGGAA+GGG | + | chr7.3:53883231-53883250 | None:intergenic | 60.0% | |
| GGATGCGGGTATGGGCACTA+AGG | + | chr7.3:53883254-53883273 | None:intergenic | 60.0% | |
| GTGCCCTTCCCCATACCCTA+TGG | - | chr7.3:53883225-53883244 | MS.gene23218:intron | 60.0% | |
| TACCCGAACCCATACCCTCG+TGG | - | chr7.3:53883190-53883209 | MS.gene23218:intron | 60.0% | |
| ! | ATGGGCACTAAGGCGCCCAT+AGG | + | chr7.3:53883244-53883263 | None:intergenic | 60.0% |
| ! | CGAGGGTATGGGTTCGGGTA+CGG | + | chr7.3:53883190-53883209 | None:intergenic | 60.0% |
| ! | GAGGGTATGGGTTCGGGTAC+GGG | + | chr7.3:53883189-53883208 | None:intergenic | 60.0% |
| ! | TGCCCACGAGGGTATGGGTT+CGG | + | chr7.3:53883196-53883215 | None:intergenic | 60.0% |
| ! | TGGGCACTAAGGCGCCCATA+GGG | + | chr7.3:53883243-53883262 | None:intergenic | 60.0% |
| !! | GCGGGTAATGGATGCGGGTA+TGG | + | chr7.3:53883263-53883282 | None:intergenic | 60.0% |
| GCGCCCATAGGGTATGGGGA+AGG | + | chr7.3:53883232-53883251 | None:intergenic | 65.0% | |
| ! | GCCCACGAGGGTATGGGTTC+GGG | + | chr7.3:53883195-53883214 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 53881636 | 53884485 | 53881636 | ID=MS.gene23218 |
| chr7.3 | mRNA | 53881636 | 53884485 | 53881636 | ID=MS.gene23218.t1;Parent=MS.gene23218 |
| chr7.3 | exon | 53884387 | 53884485 | 53884387 | ID=MS.gene23218.t1.exon1;Parent=MS.gene23218.t1 |
| chr7.3 | CDS | 53884387 | 53884485 | 53884387 | ID=cds.MS.gene23218.t1;Parent=MS.gene23218.t1 |
| chr7.3 | exon | 53883500 | 53883682 | 53883500 | ID=MS.gene23218.t1.exon2;Parent=MS.gene23218.t1 |
| chr7.3 | CDS | 53883500 | 53883682 | 53883500 | ID=cds.MS.gene23218.t1;Parent=MS.gene23218.t1 |
| chr7.3 | exon | 53882394 | 53882485 | 53882394 | ID=MS.gene23218.t1.exon3;Parent=MS.gene23218.t1 |
| chr7.3 | CDS | 53882394 | 53882485 | 53882394 | ID=cds.MS.gene23218.t1;Parent=MS.gene23218.t1 |
| chr7.3 | exon | 53882238 | 53882301 | 53882238 | ID=MS.gene23218.t1.exon4;Parent=MS.gene23218.t1 |
| chr7.3 | CDS | 53882238 | 53882301 | 53882238 | ID=cds.MS.gene23218.t1;Parent=MS.gene23218.t1 |
| chr7.3 | exon | 53882035 | 53882130 | 53882035 | ID=MS.gene23218.t1.exon5;Parent=MS.gene23218.t1 |
| chr7.3 | CDS | 53882035 | 53882130 | 53882035 | ID=cds.MS.gene23218.t1;Parent=MS.gene23218.t1 |
| chr7.3 | exon | 53881636 | 53881680 | 53881636 | ID=MS.gene23218.t1.exon6;Parent=MS.gene23218.t1 |
| chr7.3 | CDS | 53881636 | 53881680 | 53881636 | ID=cds.MS.gene23218.t1;Parent=MS.gene23218.t1 |
| Gene Sequence |
| Protein sequence |
