Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23519.t1 | XP_013449841.1 | 95.5 | 133 | 6 | 0 | 1 | 133 | 1 | 133 | 3.20E-49 | 205.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23519.t1 | P08283 | 77.8 | 72 | 16 | 0 | 59 | 130 | 59 | 130 | 8.9e-24 | 112.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23519.t1 | Q7XJ35 | 95.5 | 133 | 6 | 0 | 1 | 133 | 1 | 133 | 2.3e-49 | 205.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene23519 | 0.817262 | 3.61E-52 | -1.69E-46 |
| MS.gene051122 | MS.gene23519 | -0.800492 | 1.41E-48 | -1.69E-46 |
| MS.gene052464 | MS.gene23519 | -0.818484 | 1.91E-52 | -1.69E-46 |
| MS.gene054950 | MS.gene23519 | 0.80574 | 1.15E-49 | -1.69E-46 |
| MS.gene060851 | MS.gene23519 | -0.81386 | 2.07E-51 | -1.69E-46 |
| MS.gene060852 | MS.gene23519 | -0.813777 | 2.16E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23519.t1 | MTR_7g096280 | 97.656 | 128 | 3 | 0 | 1 | 128 | 1 | 128 | 3.35e-70 | 220 |
| MS.gene23519.t1 | MTR_1g070390 | 59.848 | 132 | 34 | 6 | 12 | 128 | 2 | 129 | 6.71e-33 | 122 |
| MS.gene23519.t1 | MTR_1g070435 | 58.333 | 132 | 36 | 5 | 12 | 128 | 2 | 129 | 4.19e-32 | 120 |
| MS.gene23519.t1 | MTR_1g070440 | 51.196 | 209 | 64 | 4 | 61 | 269 | 9 | 179 | 1.38e-27 | 107 |
| MS.gene23519.t1 | MTR_1g080700 | 64.706 | 68 | 24 | 0 | 61 | 128 | 22 | 89 | 5.79e-27 | 104 |
| MS.gene23519.t1 | MTR_5g021730 | 57.143 | 91 | 32 | 3 | 45 | 128 | 12 | 102 | 1.08e-21 | 90.1 |
| MS.gene23519.t1 | MTR_8g077160 | 53.191 | 94 | 24 | 7 | 12 | 90 | 2 | 90 | 3.43e-15 | 70.5 |
| MS.gene23519.t1 | MTR_8g018410 | 44.086 | 93 | 48 | 3 | 63 | 152 | 120 | 211 | 1.43e-12 | 67.4 |
| MS.gene23519.t1 | MTR_2g099610 | 37.662 | 77 | 45 | 2 | 60 | 134 | 137 | 212 | 4.96e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23519.t1 | AT2G30620 | 65.882 | 85 | 29 | 0 | 57 | 141 | 57 | 141 | 6.32e-34 | 123 |
| MS.gene23519.t1 | AT2G30620 | 48.249 | 257 | 89 | 7 | 57 | 312 | 57 | 270 | 4.97e-33 | 123 |
| MS.gene23519.t1 | AT2G18050 | 57.471 | 87 | 33 | 2 | 43 | 128 | 8 | 91 | 1.21e-21 | 90.1 |
| MS.gene23519.t1 | AT2G18050 | 61.290 | 62 | 23 | 1 | 68 | 128 | 1 | 62 | 1.14e-16 | 75.9 |
Find 120 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTTGGAAGCGGGCTTTC+GGG | 0.152994 | 7.3:+14880222 | None:intergenic |
| ATCAAGAAGCTTGTTGCTTC+TGG | 0.167666 | 7.3:-14879937 | MS.gene23519:CDS |
| AGCCTTGGCAGGAGCAGCTT+TGG | 0.230291 | 7.3:+14879735 | None:intergenic |
| CAAGGAAGGCTCCAACAAAA+AGG | 0.248493 | 7.3:-14879351 | MS.gene23519:CDS |
| GAAGCGGGCTTTCGGGGTTT+TGG | 0.250284 | 7.3:+14880229 | None:intergenic |
| TTCGCCTTGGGCTTCGCAGC+AGG | 0.258404 | 7.3:+14879637 | None:intergenic |
| GGTTCTTGGAAGCGGGCTTT+CGG | 0.259296 | 7.3:+14880221 | None:intergenic |
| GCAGGCTTTGCCTTGGCGGC+AGG | 0.260442 | 7.3:+14879691 | None:intergenic |
| TTTCGCCTTGGGCTTGGGCT+TGG | 0.261568 | 7.3:+14879834 | None:intergenic |
| GCGGCAGCGGGCTTCTTAGC+TGG | 0.280360 | 7.3:+14879862 | None:intergenic |
| TTCGCCTTGGGCTTGGGCTT+GGG | 0.281616 | 7.3:+14879835 | None:intergenic |
| TTTGTTGGAGCCTTCCTTGC+TGG | 0.288920 | 7.3:+14879355 | None:intergenic |
| GCAGGCTTCGCCTTTGCAGC+TGG | 0.291738 | 7.3:+14879655 | None:intergenic |
| GCTGGCTTAGCCTTGGCAGC+AGG | 0.294649 | 7.3:+14879673 | None:intergenic |
| AGGTGCTTTCGCCTTGGGCT+TGG | 0.306172 | 7.3:+14879828 | None:intergenic |
| GGTGCTTTCGCCTTGGGCTT+GGG | 0.326221 | 7.3:+14879829 | None:intergenic |
| GAACTTCAAGAAGATTCTTC+TGG | 0.329050 | 7.3:-14879965 | MS.gene23519:CDS |
| CTTGGCAGCAGGCTTTGCCT+TGG | 0.330224 | 7.3:+14879684 | None:intergenic |
| CTTTGCAGCTGGCTTAGCCT+TGG | 0.335758 | 7.3:+14879666 | None:intergenic |
| GCGGGTTTCGCCTTGGCAGC+TGG | 0.337646 | 7.3:+14879547 | None:intergenic |
| GCCTTAGCAGGCCTCGCAGC+TGG | 0.341185 | 7.3:+14879511 | None:intergenic |
| GGCTACAGGTGCTTTCGCCT+TGG | 0.344001 | 7.3:+14879822 | None:intergenic |
| GCTACAGGTGCTTTCGCCTT+GGG | 0.358145 | 7.3:+14879823 | None:intergenic |
| TTGGCCTGAGCCTTGGCTAC+AGG | 0.370054 | 7.3:+14879808 | None:intergenic |
| AGGGTGAGTGCGAGGGTTCT+TGG | 0.371985 | 7.3:+14880207 | None:intergenic |
| GCAACAGGAGCCTTCGCCTT+GGG | 0.381616 | 7.3:+14879625 | None:intergenic |
| GGCAGCAGGCTTTGCCTTGG+CGG | 0.382016 | 7.3:+14879687 | None:intergenic |
| TGGAGCCTTGGCCTGAGCCT+TGG | 0.388550 | 7.3:+14879801 | None:intergenic |
| TCAAGAAGCTTGTTGCTTCT+GGG | 0.388613 | 7.3:-14879936 | MS.gene23519:CDS |
| GCTTTGGCCTTAGCCTTAGC+AGG | 0.399563 | 7.3:+14879751 | None:intergenic |
| GCTGGCTTCGCCTTCACAGC+GGG | 0.401014 | 7.3:+14879529 | None:intergenic |
| GGCTCCAGCTGCTAAGTCTA+AGG | 0.402522 | 7.3:-14879785 | MS.gene23519:CDS |
| GCTGGTGCAGCCTTCTTCAC+TGG | 0.405093 | 7.3:+14879373 | None:intergenic |
| GCAGGCTTAGCCTTAGCAGC+TGG | 0.405094 | 7.3:+14879709 | None:intergenic |
| GTTGGATTATACCTCTTCAT+AGG | 0.406087 | 7.3:+14880183 | None:intergenic |
| GCTGGCTTAGCCTTAGCCGC+GGG | 0.407544 | 7.3:+14879565 | None:intergenic |
| TGCTTCTGGGAAGCTTGTTA+AGG | 0.408456 | 7.3:-14879923 | MS.gene23519:CDS |
| CAAGGCAAAGCCTGCTGCCA+AGG | 0.412841 | 7.3:-14879683 | MS.gene23519:CDS |
| TGAACTTTGCCAAAGCATAC+TGG | 0.416902 | 7.3:+14880016 | None:intergenic |
| GCCGGTGCAGCCTTCTTCAC+TGG | 0.420909 | 7.3:+14879412 | None:intergenic |
| ACAGCATTGGCCTTAGCAAC+AGG | 0.429638 | 7.3:+14879610 | None:intergenic |
| GGAAGAGGGTCGACGGCGGC+CGG | 0.429971 | 7.3:+14880313 | None:intergenic |
| CTTAGCAGCTGGCTTAGCCT+TGG | 0.434577 | 7.3:+14879720 | None:intergenic |
| GAAGGCTGCACCGGCGAAGA+AGG | 0.439472 | 7.3:-14879404 | MS.gene23519:CDS |
| GCAGCTGGCTTAGCCTTGGC+AGG | 0.439834 | 7.3:+14879724 | None:intergenic |
| AGAATCTTCTTGAAGTTCGC+TGG | 0.441711 | 7.3:+14879970 | None:intergenic |
| GCCGCAGCAGCTCTCTTCCC+AGG | 0.443735 | 7.3:+14879463 | None:intergenic |
| GCCAGCTGCGAGGCCTGCTA+AGG | 0.453992 | 7.3:-14879512 | MS.gene23519:CDS |
| GTAGCAGCTTTCTTCACAGC+TGG | 0.458621 | 7.3:+14879436 | None:intergenic |
| GGCTTTGCCTTAGCAGCTAC+AGG | 0.458880 | 7.3:+14879586 | None:intergenic |
| TTCGCCTTAGACTTAGCAGC+TGG | 0.461234 | 7.3:+14879781 | None:intergenic |
| TTGCTCGACGGCGGAGACGG+TGG | 0.463485 | 7.3:+14880351 | None:intergenic |
| AGACTTAGCAGCTGGAGCCT+TGG | 0.464716 | 7.3:+14879789 | None:intergenic |
| CGGTTCAAGCCAGTATGCTT+TGG | 0.465800 | 7.3:-14880025 | MS.gene23519:CDS |
| GAAGTTCTTGAAGCCTTAGC+AGG | 0.468954 | 7.3:+14879499 | None:intergenic |
| GCTGGAGCAGCAGACTTAGC+TGG | 0.472122 | 7.3:+14879880 | None:intergenic |
| TAAGGCTAAGCCAGCTGCCA+AGG | 0.472493 | 7.3:-14879557 | MS.gene23519:CDS |
| GGGTTGCTCGACGGCGGAGA+CGG | 0.472845 | 7.3:+14880348 | None:intergenic |
| AGCAACAGGAGCCTTCGCCT+TGG | 0.474423 | 7.3:+14879624 | None:intergenic |
| CAAGGCTAAGCCAGCTGCAA+AGG | 0.476286 | 7.3:-14879665 | MS.gene23519:CDS |
| AGTGCGAGGGTTCTTGGAAG+CGG | 0.476294 | 7.3:+14880213 | None:intergenic |
| TGCTGCGAAGCCCAAGGCGA+AGG | 0.477731 | 7.3:-14879635 | MS.gene23519:CDS |
| GGCGTAGCAGCCTTCTTCGC+CGG | 0.478854 | 7.3:+14879394 | None:intergenic |
| CTTCACAGCGGGTTTCGCCT+TGG | 0.479275 | 7.3:+14879540 | None:intergenic |
| TGCTCGACGGCGGAGACGGT+GGG | 0.483411 | 7.3:+14880352 | None:intergenic |
| GGCTGCTACGCCAGTGAAGA+AGG | 0.484447 | 7.3:-14879383 | MS.gene23519:CDS |
| AGCTGCTACGCCAGTGAAGA+AGG | 0.484447 | 7.3:-14879422 | MS.gene23519:CDS |
| CAAGGCTAAGCCAGCTGCTA+AGG | 0.487877 | 7.3:-14879719 | MS.gene23519:CDS |
| TGCTGTACCTGTAGCTGCTA+AGG | 0.495059 | 7.3:-14879593 | MS.gene23519:CDS |
| AGCACCTGTAGCCAAGGCTC+AGG | 0.495242 | 7.3:-14879812 | MS.gene23519:CDS |
| GTGCGAGGGTTCTTGGAAGC+GGG | 0.496962 | 7.3:+14880214 | None:intergenic |
| GCGGCCGGCTCCTCCACAAT+GGG | 0.497053 | 7.3:+14880328 | None:intergenic |
| TAAGGCAAAGCCCGCGGCTA+AGG | 0.500278 | 7.3:-14879575 | MS.gene23519:CDS |
| GATTATACCTCTTCATAGGT+AGG | 0.501241 | 7.3:+14880187 | None:intergenic |
| GGCGAAGGCTCCTGTTGCTA+AGG | 0.503889 | 7.3:-14879620 | MS.gene23519:CDS |
| GCAACCCATTGTGGAGGAGC+CGG | 0.506752 | 7.3:-14880332 | MS.gene23519:CDS |
| GGCGGCCGGCTCCTCCACAA+TGG | 0.507570 | 7.3:+14880327 | None:intergenic |
| AGCTGGCTTAGCCTTAGCCG+CGG | 0.509277 | 7.3:+14879564 | None:intergenic |
| AAAACCCAAGCCCAAGCCCA+AGG | 0.512143 | 7.3:-14879839 | MS.gene23519:CDS |
| AGCTGCTCCTGCTAAGGCTA+AGG | 0.513069 | 7.3:-14879758 | MS.gene23519:CDS |
| CAAGGCGAAACCCGCTGTGA+AGG | 0.517689 | 7.3:-14879539 | MS.gene23519:CDS |
| CTTGGCGGCAGTGGGCTCGT+CGG | 0.518772 | 7.3:+14880273 | None:intergenic |
| TTCTTGGAAGCGGGCTTTCG+GGG | 0.519746 | 7.3:+14880223 | None:intergenic |
| GGACGCGATTGTGACTTTGA+AGG | 0.521125 | 7.3:-14880055 | MS.gene23519:CDS |
| TCATTGACGACAGGTGGAAG+AGG | 0.523503 | 7.3:+14880298 | None:intergenic |
| GAAGGCTGCACCAGCAAGGA+AGG | 0.525244 | 7.3:-14879365 | MS.gene23519:CDS |
| GCCAGTGAAGAAGGCTGCAC+CGG | 0.525579 | 7.3:-14879413 | MS.gene23519:CDS |
| TAAGGCTAAGCCTGCCGCCA+AGG | 0.529628 | 7.3:-14879701 | MS.gene23519:CDS |
| TGGGAAGCTTGTTAAGGTCA+AGG | 0.534548 | 7.3:-14879917 | MS.gene23519:CDS |
| TGTAGCCAAGGCTCAGGCCA+AGG | 0.535590 | 7.3:-14879806 | MS.gene23519:CDS |
| GAAGCCTGCTGCGAAGCCCA+AGG | 0.535967 | 7.3:-14879641 | MS.gene23519:CDS |
| CGCCGTCGAGCAACCCATTG+TGG | 0.536582 | 7.3:-14880341 | MS.gene23519:CDS |
| TCTTCAACAGAGGAAGCCAT+AGG | 0.538140 | 7.3:+14880376 | None:intergenic |
| GACGGTGGGTTCTTCAACAG+AGG | 0.542415 | 7.3:+14880366 | None:intergenic |
| GGCGAAAGCTGCTCCTGCTA+AGG | 0.548061 | 7.3:-14879764 | MS.gene23519:CDS |
| GGGAAGCTTGTTAAGGTCAA+GGG | 0.548796 | 7.3:-14879916 | MS.gene23519:CDS |
| GGCCAAAGCTGCTCCTGCCA+AGG | 0.561780 | 7.3:-14879737 | MS.gene23519:CDS |
| TCATAGGTAGGGTGAGTGCG+AGG | 0.561820 | 7.3:+14880199 | None:intergenic |
| ATTATACCTCTTCATAGGTA+GGG | 0.564781 | 7.3:+14880188 | None:intergenic |
| GGCGAAAGCACCTGTAGCCA+AGG | 0.572063 | 7.3:-14879818 | MS.gene23519:CDS |
| CACTCACCCTACCTATGAAG+AGG | 0.581938 | 7.3:-14880194 | MS.gene23519:intron |
| GACAGGTGGAAGAGGGTCGA+CGG | 0.585350 | 7.3:+14880306 | None:intergenic |
| CTCCACAATGGGTTGCTCGA+CGG | 0.587768 | 7.3:+14880339 | None:intergenic |
| TCGTCGGATTCATTGACGAC+AGG | 0.595029 | 7.3:+14880289 | None:intergenic |
| GTGACTTTGAAGGAGAAGAA+CGG | 0.599741 | 7.3:-14880045 | MS.gene23519:CDS |
| TCGGATTCATTGACGACAGG+TGG | 0.600220 | 7.3:+14880292 | None:intergenic |
| CACAATGGGTTGCTCGACGG+CGG | 0.600492 | 7.3:+14880342 | None:intergenic |
| ACTTCGACAAGGACATCACC+TGG | 0.600910 | 7.3:-14879481 | MS.gene23519:CDS |
| CATAGGTAGGGTGAGTGCGA+GGG | 0.601423 | 7.3:+14880200 | None:intergenic |
| ACCTGGGAAGAGAGCTGCTG+CGG | 0.603536 | 7.3:-14879464 | MS.gene23519:CDS |
| AGCAGCTACAGGTACAGCAT+TGG | 0.604180 | 7.3:+14879597 | None:intergenic |
| TGAAGAAGGCTGCACCAGCA+AGG | 0.617052 | 7.3:-14879369 | MS.gene23519:CDS |
| AGCTGCTAAGGCAAAGCCCG+CGG | 0.620978 | 7.3:-14879581 | MS.gene23519:CDS |
| CATTGACGACAGGTGGAAGA+GGG | 0.625716 | 7.3:+14880299 | None:intergenic |
| TGAAGGCGAAGCCAGCTGCG+AGG | 0.633012 | 7.3:-14879522 | MS.gene23519:CDS |
| CGTCGAGCAACCCATTGTGG+AGG | 0.646163 | 7.3:-14880338 | MS.gene23519:CDS |
| AGCTGGCTTCGCCTTCACAG+CGG | 0.651707 | 7.3:+14879528 | None:intergenic |
| AGGTGGAAGAGGGTCGACGG+CGG | 0.677080 | 7.3:+14880309 | None:intergenic |
| CTTCGACAAGGACATCACCT+GGG | 0.693700 | 7.3:-14879480 | MS.gene23519:CDS |
| AGGCTTCAAGAACTTCGACA+AGG | 0.719954 | 7.3:-14879492 | MS.gene23519:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTTGTTGCAGA+TGG | - | chr7.3:14879627-14879646 | MS.gene23519:CDS | 20.0% |
| ATTATACCTCTTCATAGGTA+GGG | + | chr7.3:14879524-14879543 | None:intergenic | 30.0% | |
| GAACTTCAAGAAGATTCTTC+TGG | - | chr7.3:14879744-14879763 | MS.gene23519:CDS | 35.0% | |
| GATTATACCTCTTCATAGGT+AGG | + | chr7.3:14879525-14879544 | None:intergenic | 35.0% | |
| GTTGGATTATACCTCTTCAT+AGG | + | chr7.3:14879529-14879548 | None:intergenic | 35.0% | |
| !! | GTAATTGTGTTGAGTTGAGT+TGG | + | chr7.3:14879547-14879566 | None:intergenic | 35.0% |
| !!! | TTTTTTGTTGCAGATGGTGA+CGG | - | chr7.3:14879633-14879652 | MS.gene23519:CDS | 35.0% |
| AAGGAAGGCTCCAACAAAAA+GGG | - | chr7.3:14880359-14880378 | MS.gene23519:CDS | 40.0% | |
| AGAATCTTCTTGAAGTTCGC+TGG | + | chr7.3:14879742-14879761 | None:intergenic | 40.0% | |
| TGAACTTTGCCAAAGCATAC+TGG | + | chr7.3:14879696-14879715 | None:intergenic | 40.0% | |
| ! | GTGACTTTGAAGGAGAAGAA+CGG | - | chr7.3:14879664-14879683 | MS.gene23519:CDS | 40.0% |
| !! | ATCAAGAAGCTTGTTGCTTC+TGG | - | chr7.3:14879772-14879791 | MS.gene23519:CDS | 40.0% |
| !! | TCAAGAAGCTTGTTGCTTCT+GGG | - | chr7.3:14879773-14879792 | MS.gene23519:CDS | 40.0% |
| AGGAAGGCTCCAACAAAAAG+GGG | - | chr7.3:14880360-14880379 | MS.gene23519:CDS | 45.0% | |
| AGGCTTCAAGAACTTCGACA+AGG | - | chr7.3:14880217-14880236 | MS.gene23519:CDS | 45.0% | |
| CAAGGAAGGCTCCAACAAAA+AGG | - | chr7.3:14880358-14880377 | MS.gene23519:CDS | 45.0% | |
| GAAGTTCTTGAAGCCTTAGC+AGG | + | chr7.3:14880213-14880232 | None:intergenic | 45.0% | |
| !! | GGGAAGCTTGTTAAGGTCAA+GGG | - | chr7.3:14879793-14879812 | MS.gene23519:CDS | 45.0% |
| !! | TGCTTCTGGGAAGCTTGTTA+AGG | - | chr7.3:14879786-14879805 | MS.gene23519:CDS | 45.0% |
| !! | TGGGAAGCTTGTTAAGGTCA+AGG | - | chr7.3:14879792-14879811 | MS.gene23519:CDS | 45.0% |
| !!! | TTTCGGGGTTTTGGCTCTTT+GGG | + | chr7.3:14879474-14879493 | None:intergenic | 45.0% |
| AAGGCTCCAACAAAAAGGGG+GGG | - | chr7.3:14880363-14880382 | MS.gene23519:CDS | 50.0% | |
| ACTTCGACAAGGACATCACC+TGG | - | chr7.3:14880228-14880247 | MS.gene23519:CDS | 50.0% | |
| AGCAGCTACAGGTACAGCAT+TGG | + | chr7.3:14880115-14880134 | None:intergenic | 50.0% | |
| CACTCACCCTACCTATGAAG+AGG | - | chr7.3:14879515-14879534 | MS.gene23519:CDS | 50.0% | |
| CATTGACGACAGGTGGAAGA+GGG | + | chr7.3:14879413-14879432 | None:intergenic | 50.0% | |
| CGGTTCAAGCCAGTATGCTT+TGG | - | chr7.3:14879684-14879703 | MS.gene23519:CDS | 50.0% | |
| CTTCGACAAGGACATCACCT+GGG | - | chr7.3:14880229-14880248 | MS.gene23519:CDS | 50.0% | |
| GAAGGCTCCAACAAAAAGGG+GGG | - | chr7.3:14880362-14880381 | MS.gene23519:CDS | 50.0% | |
| GGAAGGCTCCAACAAAAAGG+GGG | - | chr7.3:14880361-14880380 | MS.gene23519:CDS | 50.0% | |
| GGACGCGATTGTGACTTTGA+AGG | - | chr7.3:14879654-14879673 | MS.gene23519:CDS | 50.0% | |
| GTAGCAGCTTTCTTCACAGC+TGG | + | chr7.3:14880276-14880295 | None:intergenic | 50.0% | |
| TCATTGACGACAGGTGGAAG+AGG | + | chr7.3:14879414-14879433 | None:intergenic | 50.0% | |
| TCGGATTCATTGACGACAGG+TGG | + | chr7.3:14879420-14879439 | None:intergenic | 50.0% | |
| TCGTCGGATTCATTGACGAC+AGG | + | chr7.3:14879423-14879442 | None:intergenic | 50.0% | |
| TGCTGTACCTGTAGCTGCTA+AGG | - | chr7.3:14880116-14880135 | MS.gene23519:intron | 50.0% | |
| TTCGCCTTAGACTTAGCAGC+TGG | + | chr7.3:14879931-14879950 | None:intergenic | 50.0% | |
| TTTGTTGGAGCCTTCCTTGC+TGG | + | chr7.3:14880357-14880376 | None:intergenic | 50.0% | |
| ! | TTCCTACCCCCCCTTTTTGT+TGG | + | chr7.3:14880372-14880391 | None:intergenic | 50.0% |
| !! | ACAGCATTGGCCTTAGCAAC+AGG | + | chr7.3:14880102-14880121 | None:intergenic | 50.0% |
| !!! | CTTTCGGGGTTTTGGCTCTT+TGG | + | chr7.3:14879475-14879494 | None:intergenic | 50.0% |
| !!! | GGCTCTTTGGGGGCTTTTTT+GGG | + | chr7.3:14879462-14879481 | None:intergenic | 50.0% |
| !!! | TGGCTCTTTGGGGGCTTTTT+TGG | + | chr7.3:14879463-14879482 | None:intergenic | 50.0% |
| !!! | TTCGGGGTTTTGGCTCTTTG+GGG | + | chr7.3:14879473-14879492 | None:intergenic | 50.0% |
| !!! | TTTGGGGGCTTTTTTGGGCT+TGG | + | chr7.3:14879457-14879476 | None:intergenic | 50.0% |
| AAAACCCAAGCCCAAGCCCA+AGG | - | chr7.3:14879870-14879889 | MS.gene23519:CDS | 55.0% | |
| AGACTTAGCAGCTGGAGCCT+TGG | + | chr7.3:14879923-14879942 | None:intergenic | 55.0% | |
| AGCTGCTACGCCAGTGAAGA+AGG | - | chr7.3:14880287-14880306 | MS.gene23519:CDS | 55.0% | |
| AGCTGCTCCTGCTAAGGCTA+AGG | - | chr7.3:14879951-14879970 | MS.gene23519:CDS | 55.0% | |
| AGTGCGAGGGTTCTTGGAAG+CGG | + | chr7.3:14879499-14879518 | None:intergenic | 55.0% | |
| CAAGGCTAAGCCAGCTGCAA+AGG | - | chr7.3:14880044-14880063 | MS.gene23519:CDS | 55.0% | |
| CAAGGCTAAGCCAGCTGCTA+AGG | - | chr7.3:14879990-14880009 | MS.gene23519:CDS | 55.0% | |
| CATAGGTAGGGTGAGTGCGA+GGG | + | chr7.3:14879512-14879531 | None:intergenic | 55.0% | |
| CTCCAACAAAAAGGGGGGGT+AGG | - | chr7.3:14880367-14880386 | MS.gene23519:CDS | 55.0% | |
| GCTACAGGTGCTTTCGCCTT+GGG | + | chr7.3:14879889-14879908 | None:intergenic | 55.0% | |
| GGCTCCAGCTGCTAAGTCTA+AGG | - | chr7.3:14879924-14879943 | MS.gene23519:CDS | 55.0% | |
| GGCTTTGCCTTAGCAGCTAC+AGG | + | chr7.3:14880126-14880145 | None:intergenic | 55.0% | |
| TAAGGCTAAGCCAGCTGCCA+AGG | - | chr7.3:14880152-14880171 | MS.gene23519:intron | 55.0% | |
| TCATAGGTAGGGTGAGTGCG+AGG | + | chr7.3:14879513-14879532 | None:intergenic | 55.0% | |
| TGAAGAAGGCTGCACCAGCA+AGG | - | chr7.3:14880340-14880359 | MS.gene23519:CDS | 55.0% | |
| ! | CTTAGCAGCTGGCTTAGCCT+TGG | + | chr7.3:14879992-14880011 | None:intergenic | 55.0% |
| ! | CTTTGCAGCTGGCTTAGCCT+TGG | + | chr7.3:14880046-14880065 | None:intergenic | 55.0% |
| ! | GACGGTGGGTTCTTCAACAG+AGG | + | chr7.3:14879346-14879365 | None:intergenic | 55.0% |
| ! | GGTTCTTGGAAGCGGGCTTT+CGG | + | chr7.3:14879491-14879510 | None:intergenic | 55.0% |
| ! | GTTCTTGGAAGCGGGCTTTC+GGG | + | chr7.3:14879490-14879509 | None:intergenic | 55.0% |
| ! | TTCTTGGAAGCGGGCTTTCG+GGG | + | chr7.3:14879489-14879508 | None:intergenic | 55.0% |
| !! | CTCCACAATGGGTTGCTCGA+CGG | + | chr7.3:14879373-14879392 | None:intergenic | 55.0% |
| !! | GCTTTGGCCTTAGCCTTAGC+AGG | + | chr7.3:14879961-14879980 | None:intergenic | 55.0% |
| !! | TTTTTGGGCTTGGCGGCAGT+GGG | + | chr7.3:14879447-14879466 | None:intergenic | 55.0% |
| !!! | TCGGGGTTTTGGCTCTTTGG+GGG | + | chr7.3:14879472-14879491 | None:intergenic | 55.0% |
| !!! | TTTTTTGGGCTTGGCGGCAG+TGG | + | chr7.3:14879448-14879467 | None:intergenic | 55.0% |
| ACCTGGGAAGAGAGCTGCTG+CGG | - | chr7.3:14880245-14880264 | MS.gene23519:CDS | 60.0% | |
| AGCAACAGGAGCCTTCGCCT+TGG | + | chr7.3:14880088-14880107 | None:intergenic | 60.0% | |
| AGCACCTGTAGCCAAGGCTC+AGG | - | chr7.3:14879897-14879916 | MS.gene23519:CDS | 60.0% | |
| AGCCTTGGCAGGAGCAGCTT+TGG | + | chr7.3:14879977-14879996 | None:intergenic | 60.0% | |
| AGCTGCTAAGGCAAAGCCCG+CGG | - | chr7.3:14880128-14880147 | MS.gene23519:intron | 60.0% | |
| AGGGTGAGTGCGAGGGTTCT+TGG | + | chr7.3:14879505-14879524 | None:intergenic | 60.0% | |
| AGGTGCTTTCGCCTTGGGCT+TGG | + | chr7.3:14879884-14879903 | None:intergenic | 60.0% | |
| CAAGGCAAAGCCTGCTGCCA+AGG | - | chr7.3:14880026-14880045 | MS.gene23519:CDS | 60.0% | |
| CAAGGCGAAACCCGCTGTGA+AGG | - | chr7.3:14880170-14880189 | MS.gene23519:intron | 60.0% | |
| CGTCGAGCAACCCATTGTGG+AGG | - | chr7.3:14879371-14879390 | MS.gene23519:CDS | 60.0% | |
| CTTGGCAGCAGGCTTTGCCT+TGG | + | chr7.3:14880028-14880047 | None:intergenic | 60.0% | |
| GAAGGCTGCACCAGCAAGGA+AGG | - | chr7.3:14880344-14880363 | MS.gene23519:CDS | 60.0% | |
| GACAGGTGGAAGAGGGTCGA+CGG | + | chr7.3:14879406-14879425 | None:intergenic | 60.0% | |
| GCAACAGGAGCCTTCGCCTT+GGG | + | chr7.3:14880087-14880106 | None:intergenic | 60.0% | |
| GCAACCCATTGTGGAGGAGC+CGG | - | chr7.3:14879377-14879396 | MS.gene23519:CDS | 60.0% | |
| GCCAGTGAAGAAGGCTGCAC+CGG | - | chr7.3:14880296-14880315 | MS.gene23519:CDS | 60.0% | |
| GCTGGAGCAGCAGACTTAGC+TGG | + | chr7.3:14879832-14879851 | None:intergenic | 60.0% | |
| GCTGGTGCAGCCTTCTTCAC+TGG | + | chr7.3:14880339-14880358 | None:intergenic | 60.0% | |
| GGCGAAAGCTGCTCCTGCTA+AGG | - | chr7.3:14879945-14879964 | MS.gene23519:CDS | 60.0% | |
| GGCGAAGGCTCCTGTTGCTA+AGG | - | chr7.3:14880089-14880108 | MS.gene23519:intron | 60.0% | |
| GGCTACAGGTGCTTTCGCCT+TGG | + | chr7.3:14879890-14879909 | None:intergenic | 60.0% | |
| GGCTGCTACGCCAGTGAAGA+AGG | - | chr7.3:14880326-14880345 | MS.gene23519:CDS | 60.0% | |
| GGTGCTTTCGCCTTGGGCTT+GGG | + | chr7.3:14879883-14879902 | None:intergenic | 60.0% | |
| GTGCGAGGGTTCTTGGAAGC+GGG | + | chr7.3:14879498-14879517 | None:intergenic | 60.0% | |
| TAAGGCAAAGCCCGCGGCTA+AGG | - | chr7.3:14880134-14880153 | MS.gene23519:intron | 60.0% | |
| TAAGGCTAAGCCTGCCGCCA+AGG | - | chr7.3:14880008-14880027 | MS.gene23519:CDS | 60.0% | |
| TGTAGCCAAGGCTCAGGCCA+AGG | - | chr7.3:14879903-14879922 | MS.gene23519:CDS | 60.0% | |
| TTCGCCTTGGGCTTGGGCTT+GGG | + | chr7.3:14879877-14879896 | None:intergenic | 60.0% | |
| TTGGCCTGAGCCTTGGCTAC+AGG | + | chr7.3:14879904-14879923 | None:intergenic | 60.0% | |
| TTTCGCCTTGGGCTTGGGCT+TGG | + | chr7.3:14879878-14879897 | None:intergenic | 60.0% | |
| ! | AGCTGGCTTCGCCTTCACAG+CGG | + | chr7.3:14880184-14880203 | None:intergenic | 60.0% |
| ! | CTTCACAGCGGGTTTCGCCT+TGG | + | chr7.3:14880172-14880191 | None:intergenic | 60.0% |
| ! | GGGCTTGGGCTTGGGTTTTG+CGG | + | chr7.3:14879869-14879888 | None:intergenic | 60.0% |
| !! | AGCTGGCTTAGCCTTAGCCG+CGG | + | chr7.3:14880148-14880167 | None:intergenic | 60.0% |
| !! | CACAATGGGTTGCTCGACGG+CGG | + | chr7.3:14879370-14879389 | None:intergenic | 60.0% |
| !! | GAAGCGGGCTTTCGGGGTTT+TGG | + | chr7.3:14879483-14879502 | None:intergenic | 60.0% |
| !! | GCAGGCTTAGCCTTAGCAGC+TGG | + | chr7.3:14880003-14880022 | None:intergenic | 60.0% |
| !! | GGCGAAAGCACCTGTAGCCA+AGG | - | chr7.3:14879891-14879910 | MS.gene23519:CDS | 60.0% |
| !!! | GGGGGCTTTTTTGGGCTTGG+CGG | + | chr7.3:14879454-14879473 | None:intergenic | 60.0% |
| AGGTGGAAGAGGGTCGACGG+CGG | + | chr7.3:14879403-14879422 | None:intergenic | 65.0% | |
| CGCCGTCGAGCAACCCATTG+TGG | - | chr7.3:14879368-14879387 | MS.gene23519:CDS | 65.0% | |
| GAAGCCTGCTGCGAAGCCCA+AGG | - | chr7.3:14880068-14880087 | MS.gene23519:intron | 65.0% | |
| GCAGGCTTCGCCTTTGCAGC+TGG | + | chr7.3:14880057-14880076 | None:intergenic | 65.0% | |
| GCCGGTGCAGCCTTCTTCAC+TGG | + | chr7.3:14880300-14880319 | None:intergenic | 65.0% | |
| GGCAGCAGGCTTTGCCTTGG+CGG | + | chr7.3:14880025-14880044 | None:intergenic | 65.0% | |
| GGCCAAAGCTGCTCCTGCCA+AGG | - | chr7.3:14879972-14879991 | MS.gene23519:CDS | 65.0% | |
| GGCGTAGCAGCCTTCTTCGC+CGG | + | chr7.3:14880318-14880337 | None:intergenic | 65.0% | |
| TGAAGGCGAAGCCAGCTGCG+AGG | - | chr7.3:14880187-14880206 | MS.gene23519:intron | 65.0% | |
| TGCTGCGAAGCCCAAGGCGA+AGG | - | chr7.3:14880074-14880093 | MS.gene23519:intron | 65.0% | |
| TGGAGCCTTGGCCTGAGCCT+TGG | + | chr7.3:14879911-14879930 | None:intergenic | 65.0% | |
| TTCGCCTTGGGCTTCGCAGC+AGG | + | chr7.3:14880075-14880094 | None:intergenic | 65.0% | |
| ! | GAAGGCTGCACCGGCGAAGA+AGG | - | chr7.3:14880305-14880324 | MS.gene23519:CDS | 65.0% |
| ! | GCTGGCTTCGCCTTCACAGC+GGG | + | chr7.3:14880183-14880202 | None:intergenic | 65.0% |
| ! | GGCTTGGGTTTTGCGGCAGC+GGG | + | chr7.3:14879862-14879881 | None:intergenic | 65.0% |
| ! | GGGCTTGGGTTTTGCGGCAG+CGG | + | chr7.3:14879863-14879882 | None:intergenic | 65.0% |
| !! | GCAGCTGGCTTAGCCTTGGC+AGG | + | chr7.3:14879988-14880007 | None:intergenic | 65.0% |
| !! | GCTGGCTTAGCCTTAGCCGC+GGG | + | chr7.3:14880147-14880166 | None:intergenic | 65.0% |
| !! | GCTGGCTTAGCCTTGGCAGC+AGG | + | chr7.3:14880039-14880058 | None:intergenic | 65.0% |
| GCAGGCTTTGCCTTGGCGGC+AGG | + | chr7.3:14880021-14880040 | None:intergenic | 70.0% | |
| GCCAGCTGCGAGGCCTGCTA+AGG | - | chr7.3:14880197-14880216 | MS.gene23519:CDS | 70.0% | |
| GCCGCAGCAGCTCTCTTCCC+AGG | + | chr7.3:14880249-14880268 | None:intergenic | 70.0% | |
| GCCTTAGCAGGCCTCGCAGC+TGG | + | chr7.3:14880201-14880220 | None:intergenic | 70.0% | |
| GCGGGTTTCGCCTTGGCAGC+TGG | + | chr7.3:14880165-14880184 | None:intergenic | 70.0% | |
| GGGTTGCTCGACGGCGGAGA+CGG | + | chr7.3:14879364-14879383 | None:intergenic | 70.0% | |
| TGCTCGACGGCGGAGACGGT+GGG | + | chr7.3:14879360-14879379 | None:intergenic | 70.0% | |
| TTGCTCGACGGCGGAGACGG+TGG | + | chr7.3:14879361-14879380 | None:intergenic | 70.0% | |
| ! | CTTGGCGGCAGTGGGCTCGT+CGG | + | chr7.3:14879439-14879458 | None:intergenic | 70.0% |
| ! | GCGGCAGCGGGCTTCTTAGC+TGG | + | chr7.3:14879850-14879869 | None:intergenic | 70.0% |
| ! | GCGGCCGGCTCCTCCACAAT+GGG | + | chr7.3:14879384-14879403 | None:intergenic | 70.0% |
| GGAAGAGGGTCGACGGCGGC+CGG | + | chr7.3:14879399-14879418 | None:intergenic | 75.0% | |
| ! | GGCGGCCGGCTCCTCCACAA+TGG | + | chr7.3:14879385-14879404 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 14879336 | 14880395 | 14879336 | ID=MS.gene23519 |
| chr7.3 | mRNA | 14879336 | 14880395 | 14879336 | ID=MS.gene23519.t1;Parent=MS.gene23519 |
| chr7.3 | exon | 14880195 | 14880395 | 14880195 | ID=MS.gene23519.t1.exon1;Parent=MS.gene23519.t1 |
| chr7.3 | CDS | 14880195 | 14880395 | 14880195 | ID=cds.MS.gene23519.t1;Parent=MS.gene23519.t1 |
| chr7.3 | exon | 14879336 | 14880085 | 14879336 | ID=MS.gene23519.t1.exon2;Parent=MS.gene23519.t1 |
| chr7.3 | CDS | 14879336 | 14880085 | 14879336 | ID=cds.MS.gene23519.t1;Parent=MS.gene23519.t1 |
| Gene Sequence |
| Protein sequence |
