Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23577.t1 | XP_003627719.1 | 89.8 | 490 | 46 | 2 | 1 | 490 | 1 | 486 | 1.20E-196 | 696 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23577.t1 | Q9ZRT1 | 28.0 | 600 | 267 | 15 | 35 | 490 | 10 | 588 | 1.3e-42 | 175.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23577.t1 | G7LEG0 | 89.8 | 490 | 46 | 2 | 1 | 490 | 1 | 486 | 8.7e-197 | 696.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene23577 | MS.gene004152 | PPI |
MS.gene08581 | MS.gene23577 | PPI |
MS.gene23577 | MS.gene049858 | PPI |
MS.gene23577 | MS.gene65276 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23577.t1 | MTR_8g036940 | 95.102 | 490 | 20 | 2 | 1 | 490 | 1 | 486 | 0.0 | 914 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23577.t1 | AT3G52115 | 37.629 | 388 | 183 | 14 | 119 | 490 | 244 | 588 | 3.26e-62 | 213 |
MS.gene23577.t1 | AT3G52115 | 78.049 | 41 | 9 | 0 | 37 | 77 | 12 | 52 | 1.94e-14 | 76.3 |
Find 99 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTGACTCCGGAAGGATTT+TGG | 0.103191 | 8.4:+61090766 | MS.gene23577:CDS |
TTGGAAGTGGATTGGAAATT+AGG | 0.176348 | 8.4:-61088133 | None:intergenic |
GGATGACAAAGGAGCCAATT+TGG | 0.207688 | 8.4:+61090215 | MS.gene23577:CDS |
GGATTTGAATCTGAATTATA+AGG | 0.213612 | 8.4:+61090795 | MS.gene23577:CDS |
ACATGTTTATTTGAGGAAAA+AGG | 0.219897 | 8.4:+61088537 | MS.gene23577:CDS |
TTGGGTCCTCCTTCTTCTTC+AGG | 0.224899 | 8.4:+61090234 | MS.gene23577:CDS |
GATGGAGGTGGTGGTGATTT+TGG | 0.261307 | 8.4:-61087974 | None:intergenic |
TTGATTTGGAAGAGAGATTA+AGG | 0.270048 | 8.4:+61088353 | MS.gene23577:CDS |
TTTAAACAAGGATTTGAATA+AGG | 0.277022 | 8.4:+61090422 | MS.gene23577:CDS |
TGAGGGTTTGTGTAGGAAAT+TGG | 0.293683 | 8.4:+61088423 | MS.gene23577:CDS |
GGTGAAGGATGTTGAGGTTT+TGG | 0.296912 | 8.4:+61088381 | MS.gene23577:CDS |
AGCAGAAAACGTATTCGATT+TGG | 0.310022 | 8.4:-61088099 | None:intergenic |
ATGCTAATGTCTTTCTGAAT+AGG | 0.319331 | 8.4:-61090459 | None:intergenic |
CTTATACCTTGTTCAACAAT+TGG | 0.335669 | 8.4:-61088622 | None:intergenic |
TTACCTTCAAAATCTTCATC+TGG | 0.337260 | 8.4:-61088803 | None:intergenic |
GTAATGGAAGATTGCTTCTT+CGG | 0.343950 | 8.4:-61090531 | None:intergenic |
CGCTCAGCCTTCTTTCTCAC+TGG | 0.344917 | 8.4:-61090588 | None:intergenic |
GAGGTGAAGGAGAAGGCATT+GGG | 0.345902 | 8.4:+61090192 | MS.gene23577:CDS |
TGGAAGTGGATTGGAAATTA+GGG | 0.347586 | 8.4:-61088132 | None:intergenic |
TAATGGAAGATTGCTTCTTC+GGG | 0.354507 | 8.4:-61090530 | None:intergenic |
GCTGAGCGCGAAAATTTAAA+AGG | 0.366825 | 8.4:+61090603 | MS.gene23577:CDS |
CAAAGCGGCCTGCACCTTCC+TGG | 0.372555 | 8.4:+61090313 | MS.gene23577:CDS |
GCAGAAAACGTATTCGATTT+GGG | 0.372937 | 8.4:-61088098 | None:intergenic |
CCTTCTTCTTCAGGTTTCCA+TGG | 0.375031 | 8.4:+61090243 | MS.gene23577:CDS |
GTTGGGGAAAATCGTTGATT+TGG | 0.376435 | 8.4:+61088339 | MS.gene23577:CDS |
GATGACAAAGGAGCCAATTT+GGG | 0.376729 | 8.4:+61090216 | MS.gene23577:CDS |
AATCTCAACATGTTTATTTG+AGG | 0.379062 | 8.4:+61088530 | MS.gene23577:CDS |
TGAAGACCGTAATATCAATA+TGG | 0.384344 | 8.4:+61088745 | MS.gene23577:CDS |
GTCGAGTTCGTGTTCGAGTT+CGG | 0.392987 | 8.4:-61088185 | None:intergenic |
AGCGAAAACGCGCAGTTGTT+GGG | 0.399215 | 8.4:+61088322 | MS.gene23577:CDS |
AGAAGAAGGAGGACCCAAAT+TGG | 0.411157 | 8.4:-61090229 | None:intergenic |
AAACATCCATATTGATATTA+CGG | 0.416757 | 8.4:-61088751 | None:intergenic |
CCAATATTCCAAAATCCTTC+CGG | 0.421540 | 8.4:-61090774 | None:intergenic |
CTGCTCGACTTTGATGAGAC+CGG | 0.424741 | 8.4:-61090344 | None:intergenic |
GGAAGAGAGATTAAGGTTGA+AGG | 0.432871 | 8.4:+61088360 | MS.gene23577:CDS |
CACCTTCCTGGAGGCAAACC+CGG | 0.434320 | 8.4:+61090325 | MS.gene23577:CDS |
ACAAAATTAGCTTCTGTGTC+TGG | 0.438797 | 8.4:+61090288 | MS.gene23577:CDS |
GGGTCCTTACCATCAGCATT+AGG | 0.447025 | 8.4:-61090669 | None:intergenic |
ATTGGAAATTAGGGTAGAGT+TGG | 0.448063 | 8.4:-61088123 | None:intergenic |
TGAGGTGAAGGAGAAGGCAT+TGG | 0.452485 | 8.4:+61090191 | MS.gene23577:CDS |
GAGCGAAAACGCGCAGTTGT+TGG | 0.453947 | 8.4:+61088321 | MS.gene23577:CDS |
CGTGAGAGTGAGAGTGATCT+GGG | 0.463657 | 8.4:+61088586 | MS.gene23577:CDS |
TACTCGCTCTGTTATTGCGT+TGG | 0.463811 | 8.4:-61087936 | None:intergenic |
GTTTGAATGAAGCGTATAAG+AGG | 0.466500 | 8.4:+61088503 | MS.gene23577:CDS |
ATGAGACCGGGTTTGCCTCC+AGG | 0.469138 | 8.4:-61090331 | None:intergenic |
AGCATCATGATGGTGTTTCT+AGG | 0.470761 | 8.4:+61090721 | MS.gene23577:CDS |
TCGTGAGAGTGAGAGTGATC+TGG | 0.474027 | 8.4:+61088585 | MS.gene23577:CDS |
TTGGAAATTAGGGTAGAGTT+GGG | 0.474883 | 8.4:-61088122 | None:intergenic |
ATTGTTGAAGTGTGAGGTTA+AGG | 0.478878 | 8.4:+61088459 | MS.gene23577:CDS |
GAGATTAAGGTTGAAGGTGA+AGG | 0.483816 | 8.4:+61088366 | MS.gene23577:CDS |
CTTTCGTACGAATTAAATCA+AGG | 0.488806 | 8.4:-61088234 | None:intergenic |
GTTTGCCTCCAGGAAGGTGC+AGG | 0.494686 | 8.4:-61090321 | None:intergenic |
TACCTTCAAAATCTTCATCT+GGG | 0.498220 | 8.4:-61088802 | None:intergenic |
CGTGTTCGAGTTCGGTGATA+CGG | 0.502580 | 8.4:-61088177 | None:intergenic |
GTATGTTCCTCCTTTGACTC+CGG | 0.503782 | 8.4:+61090755 | MS.gene23577:CDS |
GTTGAAGGTGAAGGATGTTG+AGG | 0.506609 | 8.4:+61088375 | MS.gene23577:CDS |
GACGAGGAGCGTGCTGAGAC+CGG | 0.507755 | 8.4:-61088044 | None:intergenic |
TCTTCCTAATGCTGATGGTA+AGG | 0.524300 | 8.4:+61090665 | MS.gene23577:CDS |
TGCTCGACTTTGATGAGACC+GGG | 0.526517 | 8.4:-61090343 | None:intergenic |
CAAAATCCTTCCGGAGTCAA+AGG | 0.533864 | 8.4:-61090765 | None:intergenic |
CGGTCTCATCAAAGTCGAGC+AGG | 0.540239 | 8.4:+61090345 | MS.gene23577:CDS |
TTCGCCGTCGATGATGGAGG+TGG | 0.549892 | 8.4:-61087986 | None:intergenic |
GTTCCTCCTTTGACTCCGGA+AGG | 0.552670 | 8.4:+61090759 | MS.gene23577:CDS |
GAGTCGACTGCAAACAATGT+AGG | 0.563921 | 8.4:+61090625 | MS.gene23577:CDS |
CCATGGAAACCTGAAGAAGA+AGG | 0.564058 | 8.4:-61090243 | None:intergenic |
AGGTGAAGGAGAAGGCATTG+GGG | 0.564092 | 8.4:+61090193 | MS.gene23577:CDS |
GCGAAAACGCGCAGTTGTTG+GGG | 0.569533 | 8.4:+61088323 | MS.gene23577:CDS |
CAGAGTCCAATTGTTGAACA+AGG | 0.570808 | 8.4:+61088616 | MS.gene23577:CDS |
CATTGAGCCAGTGAGAAAGA+AGG | 0.573663 | 8.4:+61090581 | MS.gene23577:CDS |
ATTGAAATGTGATGAGAATG+AGG | 0.576054 | 8.4:+61088405 | MS.gene23577:CDS |
GCTGTTCTTCCTAATGCTGA+TGG | 0.592805 | 8.4:+61090660 | MS.gene23577:CDS |
CATTAATGAGGTGAAGGAGA+AGG | 0.606421 | 8.4:+61090185 | MS.gene23577:CDS |
TGCTGTGTGTGACATTAATG+AGG | 0.607562 | 8.4:+61090173 | MS.gene23577:CDS |
TTAAGGATGAGAAATTGAAG+AGG | 0.612699 | 8.4:+61088476 | MS.gene23577:CDS |
GGTGAAGGAGAAGGCATTGG+GGG | 0.613610 | 8.4:+61090194 | MS.gene23577:CDS |
GCCGTCGATGATGGAGGTGG+TGG | 0.614698 | 8.4:-61087983 | None:intergenic |
AGTTGAATTGTTGAAGTGTG+AGG | 0.620193 | 8.4:+61088453 | MS.gene23577:CDS |
ATGGAAGATTGCTTCTTCGG+GGG | 0.624817 | 8.4:-61090528 | None:intergenic |
TTGAAATGTGATGAGAATGA+GGG | 0.632638 | 8.4:+61088406 | MS.gene23577:CDS |
GACCGGGTTTGCCTCCAGGA+AGG | 0.635673 | 8.4:-61090327 | None:intergenic |
ACCACCACCTCCATCATCGA+CGG | 0.636464 | 8.4:+61087982 | MS.gene23577:CDS |
TATCAGAGATAATTTAAACA+AGG | 0.637563 | 8.4:+61090410 | MS.gene23577:CDS |
GTGTGACATTAATGAGGTGA+AGG | 0.639356 | 8.4:+61090179 | MS.gene23577:CDS |
CTTCTTGAATCGATGCGACG+AGG | 0.640577 | 8.4:-61088060 | None:intergenic |
AGCGGCCTGCACCTTCCTGG+AGG | 0.646719 | 8.4:+61090316 | MS.gene23577:CDS |
AATGGAAGATTGCTTCTTCG+GGG | 0.646850 | 8.4:-61090529 | None:intergenic |
CAGCTCAGATGACGAAACAC+AGG | 0.647115 | 8.4:+61090485 | MS.gene23577:CDS |
TATTCAGAAAGACATTAGCA+TGG | 0.653823 | 8.4:+61090461 | MS.gene23577:CDS |
TGTCAAGAAAGTCATCATGA+AGG | 0.654492 | 8.4:-61090374 | None:intergenic |
AATCCTTCCGGAGTCAAAGG+AGG | 0.654602 | 8.4:-61090762 | None:intergenic |
ATGAGAATGAGGGTTTGTGT+AGG | 0.656963 | 8.4:+61088416 | MS.gene23577:CDS |
AGTCGTTGTGAGCATCATGA+TGG | 0.665427 | 8.4:+61090711 | MS.gene23577:CDS |
ACTCTCCAATTTCGCAACCG+CGG | 0.666364 | 8.4:-61088293 | None:intergenic |
CTCGAACACGAACTCGACGA+AGG | 0.677320 | 8.4:+61088190 | MS.gene23577:CDS |
GTTCGAGTTCGGTGATACGG+CGG | 0.682740 | 8.4:-61088174 | None:intergenic |
GAAGCAATCTTCCATTACAG+TGG | 0.685373 | 8.4:+61090536 | MS.gene23577:CDS |
TGGAAACCTGAAGAAGAAGG+AGG | 0.700616 | 8.4:-61090240 | None:intergenic |
CTTCTGTGTCTGGTACAAAG+CGG | 0.718638 | 8.4:+61090298 | MS.gene23577:CDS |
GTGAGAGTGAGAGTGATCTG+GGG | 0.720165 | 8.4:+61088587 | MS.gene23577:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATTTAAAAGGATTTAA+AGG | - | chr8.4:61089907-61089926 | None:intergenic | 10.0% |
!! | TAATATTCCAATTATTTAAA+AGG | - | chr8.4:61089916-61089935 | None:intergenic | 10.0% |
!!! | TTTAAATCCTTTTAAATAAT+TGG | + | chr8.4:61089906-61089925 | MS.gene23577:intron | 10.0% |
!! | TATCAATACTCAAAATATAT+AGG | + | chr8.4:61089310-61089329 | MS.gene23577:intron | 15.0% |
!!! | ATCTAATTTAAGATACATAA+TGG | - | chr8.4:61088980-61088999 | None:intergenic | 15.0% |
!! | AAACATCCATATTGATATTA+CGG | - | chr8.4:61088754-61088773 | None:intergenic | 20.0% |
!! | AATCATTGTTCATGATAAAT+TGG | + | chr8.4:61089177-61089196 | MS.gene23577:intron | 20.0% |
!! | ATCTTAAATTAGATTCTGTT+AGG | + | chr8.4:61088986-61089005 | MS.gene23577:intron | 20.0% |
!! | TACTGAATAACAGTAATAAT+AGG | - | chr8.4:61089942-61089961 | None:intergenic | 20.0% |
!! | TATCAGAGATAATTTAAACA+AGG | + | chr8.4:61090410-61090429 | MS.gene23577:CDS | 20.0% |
!! | TATTGATAAATGAATAAGGT+AGG | - | chr8.4:61089298-61089317 | None:intergenic | 20.0% |
!! | TTTAAACAAGGATTTGAATA+AGG | + | chr8.4:61090422-61090441 | MS.gene23577:CDS | 20.0% |
!!! | TGAGTATTGATAAATGAATA+AGG | - | chr8.4:61089302-61089321 | None:intergenic | 20.0% |
!!! | TTTATGATGTAATGGAAAAA+TGG | + | chr8.4:61088952-61088971 | MS.gene23577:intron | 20.0% |
!!! | TTTTGATATGCAACAATAAT+TGG | + | chr8.4:61088882-61088901 | MS.gene23577:intron | 20.0% |
! | AAAACATAGAAAGAAGATGA+TGG | - | chr8.4:61090119-61090138 | None:intergenic | 25.0% |
! | AAACATAGAAAGAAGATGAT+GGG | - | chr8.4:61090118-61090137 | None:intergenic | 25.0% |
! | AAACTAGTTATTCTGTTGTT+TGG | + | chr8.4:61088924-61088943 | MS.gene23577:intron | 25.0% |
! | AATCTCAACATGTTTATTTG+AGG | + | chr8.4:61088530-61088549 | MS.gene23577:CDS | 25.0% |
! | ACATGTTTATTTGAGGAAAA+AGG | + | chr8.4:61088537-61088556 | MS.gene23577:CDS | 25.0% |
! | ATGCATATGGATCAAAATAA+AGG | - | chr8.4:61090013-61090032 | None:intergenic | 25.0% |
! | ATTCTCTACTTCATTCATTT+AGG | + | chr8.4:61089107-61089126 | MS.gene23577:intron | 25.0% |
! | ATTCTGTTAGGTTTATGATA+GGG | + | chr8.4:61088998-61089017 | MS.gene23577:intron | 25.0% |
! | CAACAATAATTGGAATGAAT+TGG | + | chr8.4:61088892-61088911 | MS.gene23577:intron | 25.0% |
! | CAATTGAAATCTTCTATTCA+AGG | + | chr8.4:61089491-61089510 | MS.gene23577:intron | 25.0% |
! | CCAAATAATTTACACTGAAA+TGG | + | chr8.4:61089803-61089822 | MS.gene23577:intron | 25.0% |
! | CCATTTCAGTGTAAATTATT+TGG | - | chr8.4:61089806-61089825 | None:intergenic | 25.0% |
! | TACTAGAAATGTGAGTAAAA+TGG | + | chr8.4:61089465-61089484 | MS.gene23577:intron | 25.0% |
! | TTACAACAAACTAACAGTAA+GGG | + | chr8.4:61089382-61089401 | MS.gene23577:intron | 25.0% |
! | TTTCAGTGTAAATTATTTGG+TGG | - | chr8.4:61089803-61089822 | None:intergenic | 25.0% |
!! | AAAAATGAGATTTTGAGCTA+AGG | + | chr8.4:61089260-61089279 | MS.gene23577:intron | 25.0% |
!! | ATGGATTAATGTTGTAAATG+TGG | + | chr8.4:61088645-61088664 | MS.gene23577:intron | 25.0% |
!! | GTACTTGAAACTCTTTTTAT+TGG | - | chr8.4:61090562-61090581 | None:intergenic | 25.0% |
!! | TATTTTGCTTATTGCTATCA+GGG | - | chr8.4:61090692-61090711 | None:intergenic | 25.0% |
!! | TGGATACTTTTATGATGTAA+TGG | + | chr8.4:61088944-61088963 | MS.gene23577:intron | 25.0% |
!! | TTAACATGCATAGATTTTGT+TGG | + | chr8.4:61090042-61090061 | MS.gene23577:intron | 25.0% |
!!! | TTATCTCTGATATTTTCAAG+AGG | - | chr8.4:61090402-61090421 | None:intergenic | 25.0% |
AAGGGTCTATAATTCAACAA+TGG | + | chr8.4:61089406-61089425 | MS.gene23577:intron | 30.0% | |
AAGTAAACTGATACGTGTAT+TGG | - | chr8.4:61089576-61089595 | None:intergenic | 30.0% | |
ACTTCACAATCTATCTTAGA+AGG | - | chr8.4:61089988-61090007 | None:intergenic | 30.0% | |
AGTAAACTGATACGTGTATT+GGG | - | chr8.4:61089575-61089594 | None:intergenic | 30.0% | |
ATGCTAATGTCTTTCTGAAT+AGG | - | chr8.4:61090462-61090481 | None:intergenic | 30.0% | |
ATTGAAATGTGATGAGAATG+AGG | + | chr8.4:61088405-61088424 | MS.gene23577:CDS | 30.0% | |
CTATCTTAGAAGGATGAAAT+GGG | - | chr8.4:61089978-61089997 | None:intergenic | 30.0% | |
CTCAAAATATATAGGTGAGT+TGG | + | chr8.4:61089318-61089337 | MS.gene23577:intron | 30.0% | |
CTTATACCTTGTTCAACAAT+TGG | - | chr8.4:61088625-61088644 | None:intergenic | 30.0% | |
CTTTCGTACGAATTAAATCA+AGG | - | chr8.4:61088237-61088256 | None:intergenic | 30.0% | |
GATTCTGTTAGGTTTATGAT+AGG | + | chr8.4:61088997-61089016 | MS.gene23577:intron | 30.0% | |
GGGTAAAAGGATAATGAAAA+TGG | + | chr8.4:61089076-61089095 | MS.gene23577:intron | 30.0% | |
GTTACAACAAACTAACAGTA+AGG | + | chr8.4:61089381-61089400 | MS.gene23577:intron | 30.0% | |
GTTTATTTGAGGAAAAAGGT+TGG | + | chr8.4:61088541-61088560 | MS.gene23577:CDS | 30.0% | |
TACCTTCAAAATCTTCATCT+GGG | - | chr8.4:61088805-61088824 | None:intergenic | 30.0% | |
TATCTTAGAAGGATGAAATG+GGG | - | chr8.4:61089977-61089996 | None:intergenic | 30.0% | |
TATTCAGAAAGACATTAGCA+TGG | + | chr8.4:61090461-61090480 | MS.gene23577:CDS | 30.0% | |
TCTATCTTAGAAGGATGAAA+TGG | - | chr8.4:61089979-61089998 | None:intergenic | 30.0% | |
TGAAGACCGTAATATCAATA+TGG | + | chr8.4:61088745-61088764 | MS.gene23577:CDS | 30.0% | |
TTAAGGATGAGAAATTGAAG+AGG | + | chr8.4:61088476-61088495 | MS.gene23577:CDS | 30.0% | |
TTAATGCAACTTGATGCATA+TGG | - | chr8.4:61090026-61090045 | None:intergenic | 30.0% | |
TTACCTTCAAAATCTTCATC+TGG | - | chr8.4:61088806-61088825 | None:intergenic | 30.0% | |
TTGAAATGTGATGAGAATGA+GGG | + | chr8.4:61088406-61088425 | MS.gene23577:CDS | 30.0% | |
TTGTTGAACAAGGTATAAGA+TGG | + | chr8.4:61088626-61088645 | MS.gene23577:intron | 30.0% | |
! | AATTATTTGGTGGTATGACA+TGG | - | chr8.4:61089793-61089812 | None:intergenic | 30.0% |
! | ACAGAAGCTAATTTTGTACT+GGG | - | chr8.4:61090285-61090304 | None:intergenic | 30.0% |
! | CATCTTCTTTCTATGTTTTC+AGG | + | chr8.4:61090120-61090139 | MS.gene23577:intron | 30.0% |
! | CTATTTTGCTTATTGCTATC+AGG | - | chr8.4:61090693-61090712 | None:intergenic | 30.0% |
!! | TTCTAAGATAGATTGTGAAG+TGG | + | chr8.4:61089987-61090006 | MS.gene23577:intron | 30.0% |
!! | TTGATTTGGAAGAGAGATTA+AGG | + | chr8.4:61088353-61088372 | MS.gene23577:CDS | 30.0% |
AATTGATCACCCAAGGAATT+AGG | + | chr8.4:61089223-61089242 | MS.gene23577:intron | 35.0% | |
ACAAACTAACAGTAAGGGAA+AGG | + | chr8.4:61089387-61089406 | MS.gene23577:intron | 35.0% | |
ACAATGATTCAATCTCTCTC+AGG | - | chr8.4:61089166-61089185 | None:intergenic | 35.0% | |
ACACTGAAATGGAGTAAAGT+GGG | + | chr8.4:61089814-61089833 | MS.gene23577:intron | 35.0% | |
AGCAGAAAACGTATTCGATT+TGG | - | chr8.4:61088102-61088121 | None:intergenic | 35.0% | |
AGTTGAATTGTTGAAGTGTG+AGG | + | chr8.4:61088453-61088472 | MS.gene23577:CDS | 35.0% | |
ATTGATCACCCAAGGAATTA+GGG | + | chr8.4:61089224-61089243 | MS.gene23577:intron | 35.0% | |
ATTGGAAATTAGGGTAGAGT+TGG | - | chr8.4:61088126-61088145 | None:intergenic | 35.0% | |
ATTGTTGAAGTGTGAGGTTA+AGG | + | chr8.4:61088459-61088478 | MS.gene23577:CDS | 35.0% | |
CAAACTAACAGTAAGGGAAA+GGG | + | chr8.4:61089388-61089407 | MS.gene23577:intron | 35.0% | |
CAAAGATAGATGGCCAATTA+TGG | - | chr8.4:61089710-61089729 | None:intergenic | 35.0% | |
CAGTGTAAACCAAAGATAGA+TGG | - | chr8.4:61089720-61089739 | None:intergenic | 35.0% | |
CATAATTGGCCATCTATCTT+TGG | + | chr8.4:61089708-61089727 | MS.gene23577:intron | 35.0% | |
CCAATATTCCAAAATCCTTC+CGG | - | chr8.4:61090777-61090796 | None:intergenic | 35.0% | |
GAAGTTTCTAACAGACTCTA+GGG | + | chr8.4:61089428-61089447 | MS.gene23577:intron | 35.0% | |
GCAGAAAACGTATTCGATTT+GGG | - | chr8.4:61088101-61088120 | None:intergenic | 35.0% | |
GTTTGAATGAAGCGTATAAG+AGG | + | chr8.4:61088503-61088522 | MS.gene23577:CDS | 35.0% | |
TAATGGAAGATTGCTTCTTC+GGG | - | chr8.4:61090533-61090552 | None:intergenic | 35.0% | |
TACACTGAAATGGAGTAAAG+TGG | + | chr8.4:61089813-61089832 | MS.gene23577:intron | 35.0% | |
TGTCAAGAAAGTCATCATGA+AGG | - | chr8.4:61090377-61090396 | None:intergenic | 35.0% | |
TTGGAAATTAGGGTAGAGTT+GGG | - | chr8.4:61088125-61088144 | None:intergenic | 35.0% | |
! | AACCCAGATGAAGATTTTGA+AGG | + | chr8.4:61088800-61088819 | MS.gene23577:CDS | 35.0% |
! | ACAAAATTAGCTTCTGTGTC+TGG | + | chr8.4:61090288-61090307 | MS.gene23577:CDS | 35.0% |
! | CACAGAAGCTAATTTTGTAC+TGG | - | chr8.4:61090286-61090305 | None:intergenic | 35.0% |
! | CTTTTTATTGGCCACTGTAA+TGG | - | chr8.4:61090550-61090569 | None:intergenic | 35.0% |
! | GAGATTTTGAGCTAAGGAAT+CGG | + | chr8.4:61089266-61089285 | MS.gene23577:intron | 35.0% |
! | GATTTGGGAGATTTTGTCTT+TGG | - | chr8.4:61088086-61088105 | None:intergenic | 35.0% |
! | GTAATGGAAGATTGCTTCTT+CGG | - | chr8.4:61090534-61090553 | None:intergenic | 35.0% |
!! | GAAAAAGGTTGGTCTTAATG+AGG | + | chr8.4:61088552-61088571 | MS.gene23577:CDS | 35.0% |
!! | TGGAAGTGGATTGGAAATTA+GGG | - | chr8.4:61088135-61088154 | None:intergenic | 35.0% |
!! | TTGGAAGTGGATTGGAAATT+AGG | - | chr8.4:61088136-61088155 | None:intergenic | 35.0% |
AAAAGCCCGCCATATAAACA+TGG | - | chr8.4:61089678-61089697 | None:intergenic | 40.0% | |
AACAGTGAAGTGTACAGCTT+AGG | + | chr8.4:61090081-61090100 | MS.gene23577:intron | 40.0% | |
AAGGATGAAATGGGGTTAAG+TGG | - | chr8.4:61089969-61089988 | None:intergenic | 40.0% | |
AATGGAAGATTGCTTCTTCG+GGG | - | chr8.4:61090532-61090551 | None:intergenic | 40.0% | |
ACAAATGACCCCTAATTCCT+TGG | - | chr8.4:61089236-61089255 | None:intergenic | 40.0% | |
ACCACAACACAAACACTCAA+AGG | - | chr8.4:61089521-61089540 | None:intergenic | 40.0% | |
AGATAGATGGCCAATTATGG+TGG | - | chr8.4:61089707-61089726 | None:intergenic | 40.0% | |
ATGAGAATGAGGGTTTGTGT+AGG | + | chr8.4:61088416-61088435 | MS.gene23577:CDS | 40.0% | |
CAAATGACCCCTAATTCCTT+GGG | - | chr8.4:61089235-61089254 | None:intergenic | 40.0% | |
CACACAGCAACAAAAACTTC+AGG | - | chr8.4:61090162-61090181 | None:intergenic | 40.0% | |
CAGAGTCCAATTGTTGAACA+AGG | + | chr8.4:61088616-61088635 | MS.gene23577:CDS | 40.0% | |
CATTAATGAGGTGAAGGAGA+AGG | + | chr8.4:61090185-61090204 | MS.gene23577:CDS | 40.0% | |
GAAAAATGGTGGTCTCACAT+CGG | - | chr8.4:61089771-61089790 | None:intergenic | 40.0% | |
GAAGCAATCTTCCATTACAG+TGG | + | chr8.4:61090536-61090555 | MS.gene23577:CDS | 40.0% | |
GACTGATAATTGATCACCCA+AGG | + | chr8.4:61089216-61089235 | MS.gene23577:intron | 40.0% | |
GAGATTAAGGTTGAAGGTGA+AGG | + | chr8.4:61088366-61088385 | MS.gene23577:CDS | 40.0% | |
GATGACAAAGGAGCCAATTT+GGG | + | chr8.4:61090216-61090235 | MS.gene23577:CDS | 40.0% | |
GCTGAGCGCGAAAATTTAAA+AGG | + | chr8.4:61090603-61090622 | MS.gene23577:CDS | 40.0% | |
GGAAGAGAGATTAAGGTTGA+AGG | + | chr8.4:61088360-61088379 | MS.gene23577:CDS | 40.0% | |
GGAAGTTTCTAACAGACTCT+AGG | + | chr8.4:61089427-61089446 | MS.gene23577:intron | 40.0% | |
GGAATTAGGGGTCATTTGTT+AGG | + | chr8.4:61089237-61089256 | MS.gene23577:intron | 40.0% | |
GGTATGACATGGAAAAATGG+TGG | - | chr8.4:61089782-61089801 | None:intergenic | 40.0% | |
GGTGGTATGACATGGAAAAA+TGG | - | chr8.4:61089785-61089804 | None:intergenic | 40.0% | |
GTGTGACATTAATGAGGTGA+AGG | + | chr8.4:61090179-61090198 | MS.gene23577:CDS | 40.0% | |
GTGTTGTGGTGTACTTAGTT+GGG | + | chr8.4:61089531-61089550 | MS.gene23577:intron | 40.0% | |
TCTTCCTAATGCTGATGGTA+AGG | + | chr8.4:61090665-61090684 | MS.gene23577:CDS | 40.0% | |
TGAGGGTTTGTGTAGGAAAT+TGG | + | chr8.4:61088423-61088442 | MS.gene23577:CDS | 40.0% | |
TGCTGTGTGTGACATTAATG+AGG | + | chr8.4:61090173-61090192 | MS.gene23577:CDS | 40.0% | |
TGTGTTGTGGTGTACTTAGT+TGG | + | chr8.4:61089530-61089549 | MS.gene23577:intron | 40.0% | |
TTGATCACCCAAGGAATTAG+GGG | + | chr8.4:61089225-61089244 | MS.gene23577:intron | 40.0% | |
! | AGCATCATGATGGTGTTTCT+AGG | + | chr8.4:61090721-61090740 | MS.gene23577:CDS | 40.0% |
! | CAGACTCTAGGGAATCTTTA+AGG | + | chr8.4:61089439-61089458 | MS.gene23577:intron | 40.0% |
! | GAAGCTAATTTTGTACTGGG+TGG | - | chr8.4:61090282-61090301 | None:intergenic | 40.0% |
! | GTTGGGGAAAATCGTTGATT+TGG | + | chr8.4:61088339-61088358 | MS.gene23577:CDS | 40.0% |
! | TAACCCTTTTGAGCAGGAAA+CGG | + | chr8.4:61089036-61089055 | MS.gene23577:intron | 40.0% |
! | TTGTACTGGGTGGACATTTT+TGG | - | chr8.4:61090272-61090291 | None:intergenic | 40.0% |
!!! | ATGTTTATATGGCGGGCTTT+TGG | + | chr8.4:61089677-61089696 | MS.gene23577:intron | 40.0% |
!!! | CCGGAAGGATTTTGGAATAT+TGG | + | chr8.4:61090774-61090793 | MS.gene23577:CDS | 40.0% |
!!! | TTTTGGCTTGCCACCATAAT+TGG | + | chr8.4:61089694-61089713 | MS.gene23577:intron | 40.0% |
AAAAACCGCGGTTGCGAAAT+TGG | + | chr8.4:61088288-61088307 | MS.gene23577:CDS | 45.0% | |
AGAAGAAGGAGGACCCAAAT+TGG | - | chr8.4:61090232-61090251 | None:intergenic | 45.0% | |
AGTCCGTTTCCTGCTCAAAA+GGG | - | chr8.4:61089042-61089061 | None:intergenic | 45.0% | |
AGTCGTTGTGAGCATCATGA+TGG | + | chr8.4:61090711-61090730 | MS.gene23577:CDS | 45.0% | |
ATGGAAGATTGCTTCTTCGG+GGG | - | chr8.4:61090531-61090550 | None:intergenic | 45.0% | |
ATGGAGTAAAGTGGGTGATG+TGG | + | chr8.4:61089822-61089841 | MS.gene23577:intron | 45.0% | |
CAAAATCCTTCCGGAGTCAA+AGG | - | chr8.4:61090768-61090787 | None:intergenic | 45.0% | |
CAACGCCATGTTTATATGGC+GGG | + | chr8.4:61089670-61089689 | MS.gene23577:intron | 45.0% | |
CATTGAGCCAGTGAGAAAGA+AGG | + | chr8.4:61090581-61090600 | MS.gene23577:CDS | 45.0% | |
CCATGGAAACCTGAAGAAGA+AGG | - | chr8.4:61090246-61090265 | None:intergenic | 45.0% | |
CGAAGAGAAGCAAAAAACCG+CGG | + | chr8.4:61088276-61088295 | MS.gene23577:CDS | 45.0% | |
CTTCTGTGTCTGGTACAAAG+CGG | + | chr8.4:61090298-61090317 | MS.gene23577:CDS | 45.0% | |
GAGTCGACTGCAAACAATGT+AGG | + | chr8.4:61090625-61090644 | MS.gene23577:CDS | 45.0% | |
GCAACGCCATGTTTATATGG+CGG | + | chr8.4:61089669-61089688 | MS.gene23577:intron | 45.0% | |
GCCTTTGAGTGTTTGTGTTG+TGG | + | chr8.4:61089517-61089536 | MS.gene23577:intron | 45.0% | |
GCTGCAACGCCATGTTTATA+TGG | + | chr8.4:61089666-61089685 | MS.gene23577:intron | 45.0% | |
GCTGTTCTTCCTAATGCTGA+TGG | + | chr8.4:61090660-61090679 | MS.gene23577:CDS | 45.0% | |
GGATGACAAAGGAGCCAATT+TGG | + | chr8.4:61090215-61090234 | MS.gene23577:CDS | 45.0% | |
GGTTCCTGATTACTTGCATC+AGG | + | chr8.4:61089339-61089358 | MS.gene23577:intron | 45.0% | |
GTATGTTCCTCCTTTGACTC+CGG | + | chr8.4:61090755-61090774 | MS.gene23577:CDS | 45.0% | |
GTTGAAGGTGAAGGATGTTG+AGG | + | chr8.4:61088375-61088394 | MS.gene23577:CDS | 45.0% | |
TACTCGCTCTGTTATTGCGT+TGG | - | chr8.4:61087939-61087958 | None:intergenic | 45.0% | |
TGGAAACCTGAAGAAGAAGG+AGG | - | chr8.4:61090243-61090262 | None:intergenic | 45.0% | |
TGTACTTAGTTGGGCTTCCT+TGG | + | chr8.4:61089540-61089559 | MS.gene23577:intron | 45.0% | |
! | CCTTCTTCTTCAGGTTTCCA+TGG | + | chr8.4:61090243-61090262 | MS.gene23577:CDS | 45.0% |
! | CTTCAGGAGTTCTTTTCTCG+AGG | - | chr8.4:61090146-61090165 | None:intergenic | 45.0% |
! | CTTTGACTCCGGAAGGATTT+TGG | + | chr8.4:61090766-61090785 | MS.gene23577:CDS | 45.0% |
! | CTTTTACCCCTCTCCTCTTT+CGG | - | chr8.4:61089065-61089084 | None:intergenic | 45.0% |
! | GATTCTCTGGAAGCAGTCAT+AGG | + | chr8.4:61089644-61089663 | MS.gene23577:intron | 45.0% |
! | GCTCAAAAGGGTTAGCAGTA+AGG | - | chr8.4:61089030-61089049 | None:intergenic | 45.0% |
! | GGTGAAGGATGTTGAGGTTT+TGG | + | chr8.4:61088381-61088400 | MS.gene23577:CDS | 45.0% |
! | TACTGCTAACCCTTTTGAGC+AGG | + | chr8.4:61089030-61089049 | MS.gene23577:intron | 45.0% |
! | TTTCGCATTGGCAGATTCTC+TGG | + | chr8.4:61089631-61089650 | MS.gene23577:intron | 45.0% |
!! | CGGAGTTTTTGGAAGTGGAT+TGG | - | chr8.4:61088144-61088163 | None:intergenic | 45.0% |
!! | GTGGACATTTTTGGACACCA+TGG | - | chr8.4:61090263-61090282 | None:intergenic | 45.0% |
AATCCTTCCGGAGTCAAAGG+AGG | - | chr8.4:61090765-61090784 | None:intergenic | 50.0% | |
ACCGACGAAAAAGTCGTCTC+CGG | + | chr8.4:61088025-61088044 | MS.gene23577:CDS | 50.0% | |
ACTCTCCAATTTCGCAACCG+CGG | - | chr8.4:61088296-61088315 | None:intergenic | 50.0% | |
AGCGAAAACGCGCAGTTGTT+GGG | + | chr8.4:61088322-61088341 | MS.gene23577:CDS | 50.0% | |
CAGCTCAGATGACGAAACAC+AGG | + | chr8.4:61090485-61090504 | MS.gene23577:CDS | 50.0% | |
CGAAAGAGGAGAGGGGTAAA+AGG | + | chr8.4:61089063-61089082 | MS.gene23577:intron | 50.0% | |
CGTGAGAGTGAGAGTGATCT+GGG | + | chr8.4:61088586-61088605 | MS.gene23577:CDS | 50.0% | |
CTGCTCGACTTTGATGAGAC+CGG | - | chr8.4:61090347-61090366 | None:intergenic | 50.0% | |
CTTCTTGAATCGATGCGACG+AGG | - | chr8.4:61088063-61088082 | None:intergenic | 50.0% | |
GAGTCCGTTTCCTGCTCAAA+AGG | - | chr8.4:61089043-61089062 | None:intergenic | 50.0% | |
GATTACTTGCATCAGGTGCC+AGG | + | chr8.4:61089346-61089365 | MS.gene23577:intron | 50.0% | |
GGCACCTGATGCAAGTAATC+AGG | - | chr8.4:61089346-61089365 | None:intergenic | 50.0% | |
GGGTCCTTACCATCAGCATT+AGG | - | chr8.4:61090672-61090691 | None:intergenic | 50.0% | |
GTATTGGGACCAACAGTCCA+AGG | - | chr8.4:61089560-61089579 | None:intergenic | 50.0% | |
GTGAGAGTGAGAGTGATCTG+GGG | + | chr8.4:61088587-61088606 | MS.gene23577:CDS | 50.0% | |
TCGTGAGAGTGAGAGTGATC+TGG | + | chr8.4:61088585-61088604 | MS.gene23577:CDS | 50.0% | |
TGCTCGACTTTGATGAGACC+GGG | - | chr8.4:61090346-61090365 | None:intergenic | 50.0% | |
TTGGGTCCTCCTTCTTCTTC+AGG | + | chr8.4:61090234-61090253 | MS.gene23577:CDS | 50.0% | |
! | CGTGTTCGAGTTCGGTGATA+CGG | - | chr8.4:61088180-61088199 | None:intergenic | 50.0% |
! | GAGTTTTTCGCCGTCGATGA+TGG | - | chr8.4:61087995-61088014 | None:intergenic | 50.0% |
! | GCGTTTTGCGTCGGAGTTTT+TGG | - | chr8.4:61088155-61088174 | None:intergenic | 50.0% |
! | GTCGAGTTCGTGTTCGAGTT+CGG | - | chr8.4:61088188-61088207 | None:intergenic | 50.0% |
! | TGAGGTGAAGGAGAAGGCAT+TGG | + | chr8.4:61090191-61090210 | MS.gene23577:CDS | 50.0% |
!! | AAGGCATTGGGGGATGACAA+AGG | + | chr8.4:61090204-61090223 | MS.gene23577:CDS | 50.0% |
!! | AGGTGAAGGAGAAGGCATTG+GGG | + | chr8.4:61090193-61090212 | MS.gene23577:CDS | 50.0% |
!! | GAGGTGAAGGAGAAGGCATT+GGG | + | chr8.4:61090192-61090211 | MS.gene23577:CDS | 50.0% |
!! | GATGGAGGTGGTGGTGATTT+TGG | - | chr8.4:61087977-61087996 | None:intergenic | 50.0% |
!! | TGCGTCGGAGTTTTTGGAAG+TGG | - | chr8.4:61088149-61088168 | None:intergenic | 50.0% |
!! | TTTTTCGCCGTCGATGATGG+AGG | - | chr8.4:61087992-61088011 | None:intergenic | 50.0% |
!!! | ACCGGAGACGACTTTTTCGT+CGG | - | chr8.4:61088029-61088048 | None:intergenic | 50.0% |
!!! | ACGACTTTTTCGTCGGTGAC+TGG | - | chr8.4:61088022-61088041 | None:intergenic | 50.0% |
ACCACCACCTCCATCATCGA+CGG | + | chr8.4:61087982-61088001 | MS.gene23577:CDS | 55.0% | |
ACGGACTCCGAAAGAGGAGA+GGG | + | chr8.4:61089055-61089074 | MS.gene23577:intron | 55.0% | |
CGCTCAGCCTTCTTTCTCAC+TGG | - | chr8.4:61090591-61090610 | None:intergenic | 55.0% | |
CGGTCTCATCAAAGTCGAGC+AGG | + | chr8.4:61090345-61090364 | MS.gene23577:CDS | 55.0% | |
CTCGAACACGAACTCGACGA+AGG | + | chr8.4:61088190-61088209 | MS.gene23577:CDS | 55.0% | |
GAGCGAAAACGCGCAGTTGT+TGG | + | chr8.4:61088321-61088340 | MS.gene23577:CDS | 55.0% | |
GCGAAAACGCGCAGTTGTTG+GGG | + | chr8.4:61088323-61088342 | MS.gene23577:CDS | 55.0% | |
GCGCTATGACGCTTTCGCAT+TGG | + | chr8.4:61089619-61089638 | MS.gene23577:intron | 55.0% | |
GTTCCTCCTTTGACTCCGGA+AGG | + | chr8.4:61090759-61090778 | MS.gene23577:CDS | 55.0% | |
GTTGGGCTTCCTTGGACTGT+TGG | + | chr8.4:61089548-61089567 | MS.gene23577:intron | 55.0% | |
TGTAACATCCTCCGCACACC+TGG | - | chr8.4:61089367-61089386 | None:intergenic | 55.0% | |
! | AACGGACTCCGAAAGAGGAG+AGG | + | chr8.4:61089054-61089073 | MS.gene23577:intron | 55.0% |
! | CAGGAAACGGACTCCGAAAG+AGG | + | chr8.4:61089049-61089068 | MS.gene23577:intron | 55.0% |
! | GTTCGAGTTCGGTGATACGG+CGG | - | chr8.4:61088177-61088196 | None:intergenic | 55.0% |
!! | GATTTTGGTGAGCGCGTGTG+AGG | - | chr8.4:61087962-61087981 | None:intergenic | 55.0% |
!! | GGTGAAGGAGAAGGCATTGG+GGG | + | chr8.4:61090194-61090213 | MS.gene23577:CDS | 55.0% |
ATGAGACCGGGTTTGCCTCC+AGG | - | chr8.4:61090334-61090353 | None:intergenic | 60.0% | |
CACCTTCCTGGAGGCAAACC+CGG | + | chr8.4:61090325-61090344 | MS.gene23577:CDS | 60.0% | |
CGGACTCCGAAAGAGGAGAG+GGG | + | chr8.4:61089056-61089075 | MS.gene23577:intron | 60.0% | |
CTTCTTCGGGGGACTGCTTC+TGG | - | chr8.4:61090520-61090539 | None:intergenic | 60.0% | |
TGCATCAGGTGCCAGGTGTG+CGG | + | chr8.4:61089353-61089372 | MS.gene23577:intron | 60.0% | |
! | GATACGGCGGCGTTTTGCGT+CGG | - | chr8.4:61088164-61088183 | None:intergenic | 60.0% |
! | GTTTGCCTCCAGGAAGGTGC+AGG | - | chr8.4:61090324-61090343 | None:intergenic | 60.0% |
!! | TTCGCCGTCGATGATGGAGG+TGG | - | chr8.4:61087989-61088008 | None:intergenic | 60.0% |
ATCAGGTGCCAGGTGTGCGG+AGG | + | chr8.4:61089356-61089375 | MS.gene23577:intron | 65.0% | |
CAAAGCGGCCTGCACCTTCC+TGG | + | chr8.4:61090313-61090332 | MS.gene23577:CDS | 65.0% | |
GACCGGGTTTGCCTCCAGGA+AGG | - | chr8.4:61090330-61090349 | None:intergenic | 65.0% | |
! | GACGAGGAGCGTGCTGAGAC+CGG | - | chr8.4:61088047-61088066 | None:intergenic | 65.0% |
!! | GCCGTCGATGATGGAGGTGG+TGG | - | chr8.4:61087986-61088005 | None:intergenic | 65.0% |
AGCGGCCTGCACCTTCCTGG+AGG | + | chr8.4:61090316-61090335 | MS.gene23577:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 61087926 | 61090815 | 61087926 | ID=MS.gene23577 |
chr8.4 | mRNA | 61087926 | 61090815 | 61087926 | ID=MS.gene23577.t1;Parent=MS.gene23577 |
chr8.4 | exon | 61087926 | 61088637 | 61087926 | ID=MS.gene23577.t1.exon1;Parent=MS.gene23577.t1 |
chr8.4 | CDS | 61087926 | 61088637 | 61087926 | ID=cds.MS.gene23577.t1;Parent=MS.gene23577.t1 |
chr8.4 | exon | 61088735 | 61088821 | 61088735 | ID=MS.gene23577.t1.exon2;Parent=MS.gene23577.t1 |
chr8.4 | CDS | 61088735 | 61088821 | 61088735 | ID=cds.MS.gene23577.t1;Parent=MS.gene23577.t1 |
chr8.4 | exon | 61090142 | 61090815 | 61090142 | ID=MS.gene23577.t1.exon3;Parent=MS.gene23577.t1 |
chr8.4 | CDS | 61090142 | 61090815 | 61090142 | ID=cds.MS.gene23577.t1;Parent=MS.gene23577.t1 |
Gene Sequence |
Protein sequence |