AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004152


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004152.t1 MTR_4g461060 97.258 620 17 0 1 620 1 620 0.0 1211
MS.gene004152.t1 MTR_4g461060 97.236 615 17 0 6 620 3 617 0.0 1198
MS.gene004152.t1 MTR_7g100730 45.048 626 316 6 1 617 1 607 3.55e-142 426
MS.gene004152.t1 MTR_1g066850 44.374 631 289 10 1 617 1 583 1.34e-129 393
MS.gene004152.t1 MTR_2g093260 52.573 447 159 9 188 620 78 485 8.30e-119 362
MS.gene004152.t1 MTR_7g061150 46.543 376 177 5 248 617 3 360 7.56e-80 257
MS.gene004152.t1 MTR_2g093250 55.814 129 53 1 306 434 93 217 3.60e-32 124
MS.gene004152.t1 MTR_2g093240 46.296 108 29 2 513 620 3 81 6.43e-20 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004152.t1 AT5G60210 44.872 624 280 13 1 620 1 564 4.63e-147 437
MS.gene004152.t1 AT5G60210 44.872 624 280 13 1 620 1 564 4.63e-147 437
MS.gene004152.t1 AT5G60210 44.872 624 280 13 1 620 1 564 4.63e-147 437
MS.gene004152.t1 AT5G60210 44.872 624 280 13 1 620 1 564 4.63e-147 437
MS.gene004152.t1 AT5G60210 44.750 619 278 13 6 620 30 588 9.70e-144 430
MS.gene004152.t1 AT5G60210 44.750 619 278 13 6 620 30 588 9.70e-144 430
MS.gene004152.t1 AT2G37080 40.769 650 286 13 1 620 1 581 2.10e-120 369
MS.gene004152.t1 AT2G37080 40.644 652 286 14 1 620 1 583 2.10e-118 364
MS.gene004152.t1 AT2G37080 40.644 652 286 14 1 620 1 583 2.10e-118 364
MS.gene004152.t1 AT3G53350 40.838 191 88 4 1 187 1 170 4.61e-30 122
MS.gene004152.t1 AT3G53350 30.725 345 112 11 277 620 176 394 2.96e-23 102
MS.gene004152.t1 AT3G53350 40.838 191 88 4 1 187 1 170 4.61e-30 122
MS.gene004152.t1 AT3G53350 30.725 345 112 11 277 620 176 394 2.96e-23 102
MS.gene004152.t1 AT3G53350 40.415 193 88 5 1 187 1 172 2.72e-28 117
MS.gene004152.t1 AT3G53350 30.725 345 112 11 277 620 178 396 3.30e-23 102
MS.gene004152.t1 AT3G53350 40.415 193 88 5 1 187 1 172 2.72e-28 117
MS.gene004152.t1 AT3G53350 30.725 345 112 11 277 620 178 396 3.30e-23 102
MS.gene004152.t1 AT3G53350 40.415 193 88 5 1 187 1 172 2.72e-28 117
MS.gene004152.t1 AT3G53350 30.725 345 112 11 277 620 178 396 3.30e-23 102
MS.gene004152.t1 AT3G53350 40.000 185 86 4 7 187 18 181 2.55e-26 112
MS.gene004152.t1 AT3G53350 30.725 345 112 11 277 620 187 405 1.03e-22 101
MS.gene004152.t1 AT3G53350 40.642 187 84 5 7 187 18 183 1.12e-24 107
MS.gene004152.t1 AT3G53350 30.725 345 112 11 277 620 189 407 7.75e-23 101
MS.gene004152.t1 AT3G53350 40.642 187 84 5 7 187 18 183 1.12e-24 107
MS.gene004152.t1 AT3G53350 30.725 345 112 11 277 620 189 407 7.75e-23 101
MS.gene004152.t1 AT3G53350 36.199 221 86 5 1 187 1 200 2.49e-24 106
MS.gene004152.t1 AT3G53350 30.725 345 112 11 277 620 206 424 9.27e-23 101
MS.gene004152.t1 AT1G78430 37.640 178 99 5 444 617 151 320 1.71e-18 87.4
MS.gene004152.t1 AT1G17140 34.254 181 98 4 449 617 169 340 3.87e-14 74.7
MS.gene004152.t1 AT1G17140 34.254 181 98 4 449 617 169 340 3.87e-14 74.7

Find 107 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTTGTGCCTGAGTTTC+AGG 0.158972 4.2:+43155887 None:intergenic
TACCTCAGGAACTGGGCTTC+TGG 0.169803 4.2:+43156839 None:intergenic
TTTGAAGATTACCTTGTCTT+AGG 0.184407 4.2:+43157839 None:intergenic
AAAGAACCGTCGAGATTCTA+AGG 0.289339 4.2:-43155829 MS.gene004152:CDS
TACTGAGAGATCCGTGTCTT+TGG 0.303034 4.2:-43154874 MS.gene004152:CDS
GAGCAACTCTTAGCCCTATC+TGG 0.309073 4.2:-43156250 MS.gene004152:CDS
TCAACATCTTCAGCATAATT+AGG 0.312004 4.2:+43154825 None:intergenic
ACCTCAGGAACTGGGCTTCT+GGG 0.316608 4.2:+43156840 None:intergenic
TCTTAGTTCGCTTTCCATTT+CGG 0.319511 4.2:+43154980 None:intergenic
TGCTTTGTCTTCTGCATTGA+AGG 0.331152 4.2:-43156077 MS.gene004152:CDS
ATAATTAGGTGAATACTTAT+AGG 0.350218 4.2:+43154839 None:intergenic
CGGTCACCCTCGCCACTTTA+CGG 0.350515 4.2:+43155033 None:intergenic
TGACTTGCGATCAGCGAGTT+TGG 0.351529 4.2:+43156863 None:intergenic
GGTAACATGCTGAAGAAGTT+TGG 0.353831 4.2:-43154777 MS.gene004152:CDS
GCACGCGGAGAAACTTTCTT+AGG 0.360740 4.2:+43156978 None:intergenic
ATCTCTTCTTCAATATGATT+AGG 0.361618 4.2:+43155602 None:intergenic
AAAGTGAAATATTGAGAAAT+GGG 0.363571 4.2:-43155631 MS.gene004152:CDS
CCCGAGCAAAATATCTGAAT+TGG 0.366490 4.2:-43156380 MS.gene004152:CDS
CAGCAATGCGTACGAGTTGA+TGG 0.372307 4.2:-43155483 MS.gene004152:CDS
GAAAGTGAAATATTGAGAAA+TGG 0.381211 4.2:-43155632 MS.gene004152:CDS
TGAAGAAGTTTGGAGTCTTA+TGG 0.383316 4.2:-43154767 MS.gene004152:CDS
TTGAAGATTACCTTGTCTTA+GGG 0.385906 4.2:+43157840 None:intergenic
GTTCTTTGCTATTCTTGAGT+TGG 0.389004 4.2:+43155909 None:intergenic
CAACTCCATTGCTTTGGAGT+TGG 0.399162 4.2:-43155777 MS.gene004152:CDS
AAACTTGTTACCTCAGGAAC+TGG 0.401038 4.2:+43156831 None:intergenic
GGCAGCTGCTGCTATGATTT+CGG 0.401359 4.2:-43154916 MS.gene004152:CDS
CTTTAGCATCTCGTTCTCTT+CGG 0.417380 4.2:+43155181 None:intergenic
TCAAAAGGAACTCAAAAGAT+TGG 0.417608 4.2:-43155267 MS.gene004152:CDS
TGGCTGCAACTCCATTGCTT+TGG 0.418359 4.2:-43155783 MS.gene004152:CDS
CGCGAGGCGGTTACGAAACT+CGG 0.423677 4.2:-43155086 MS.gene004152:CDS
GCTGAAAGCACAACTTGAAT+TGG 0.425528 4.2:-43156044 MS.gene004152:CDS
AACTGATATTGAAGAGTTGA+AGG 0.430741 4.2:-43155396 MS.gene004152:CDS
TGTTCTTTGAAGTCTGAGAT+TGG 0.431751 4.2:-43155578 MS.gene004152:CDS
TATCTAGAGCTATGTGCTAC+TGG 0.432289 4.2:-43156202 MS.gene004152:CDS
AGAGTTGAAGGCTAATCTAA+TGG 0.435601 4.2:-43155384 MS.gene004152:CDS
CCTCCAACTCACATTGTCTC+TGG 0.446526 4.2:+43155438 None:intergenic
AAATGAACATGGACTTCAAA+AGG 0.449057 4.2:-43155282 MS.gene004152:CDS
GCAAGCTCAGCAAGACTTCG+AGG 0.450128 4.2:-43156281 MS.gene004152:CDS
GTTGATGGAGCAGATAAAAT+CGG 0.470705 4.2:-43155468 MS.gene004152:CDS
GAGCAGATAAAATCGGAATC+AGG 0.477930 4.2:-43155461 MS.gene004152:CDS
AACCGAGTTGCAAGGTATCA+TGG 0.481196 4.2:-43155354 MS.gene004152:CDS
AAGCGAACTAAGAAGGCTTA+AGG 0.481520 4.2:-43154970 MS.gene004152:CDS
TAGGGCTAAGAGTTGCTCCT+TGG 0.485611 4.2:+43156255 None:intergenic
TCAAACTCAACAAGCTGAAT+CGG 0.486664 4.2:-43156002 MS.gene004152:CDS
CAGAAGTGGTTCTTCTGAAG+TGG 0.492122 4.2:-43157003 MS.gene004152:CDS
ACAAGTGGCAAGCTCCGAAA+TGG 0.492854 4.2:-43154994 MS.gene004152:CDS
TCATTCTGTTCAAAATCTTG+TGG 0.494055 4.2:-43155675 MS.gene004152:CDS
GTCAACTGAGAGATGCTGTT+GGG 0.495983 4.2:+43156105 None:intergenic
GAAAATCAACAAGAGTTGCT+TGG 0.499437 4.2:-43155156 MS.gene004152:CDS
CCAGAGACAATGTGAGTTGG+AGG 0.499761 4.2:-43155438 MS.gene004152:CDS
TGATTTCGGCAGGGAACAAT+GGG 0.505513 4.2:-43154902 MS.gene004152:CDS
ACTTCAAGATGATTTGAAGA+AGG 0.507940 4.2:-43156341 MS.gene004152:CDS
GCTGCTGCTATGATTTCGGC+AGG 0.511645 4.2:-43154912 MS.gene004152:CDS
ATGATTTCGGCAGGGAACAA+TGG 0.513538 4.2:-43154903 MS.gene004152:CDS
TAGCAAAGAACCTGAAACTC+AGG 0.524331 4.2:-43155897 MS.gene004152:CDS
CTTTGAAGTCTGAGATTGGA+CGG 0.524621 4.2:-43155574 MS.gene004152:CDS
GACGTTGCGAGAGACGTAGA+TGG 0.528471 4.2:-43155803 MS.gene004152:CDS
ACGTGATAGCGCATGGAAGT+CGG 0.536408 4.2:-43156140 MS.gene004152:CDS
AAATGGAAAGCGAACTAAGA+AGG 0.538764 4.2:-43154977 MS.gene004152:CDS
TTCCATGATACCTTGCAACT+CGG 0.542413 4.2:+43155352 None:intergenic
AGACAGAAGCAACCGTAAAG+TGG 0.543135 4.2:-43155045 MS.gene004152:CDS
ATCAGAATCACTTTCTCAGA+TGG 0.543609 4.2:-43155945 MS.gene004152:CDS
GCAGTTAGAAGCAGCACAAG+TGG 0.544851 4.2:-43155009 MS.gene004152:CDS
TTGTGCTGCTTCTAACTGCT+CGG 0.545994 4.2:+43155013 None:intergenic
TTGTTCTTGATATTTAGTCT+CGG 0.554617 4.2:+43155529 None:intergenic
TGAAGATTACCTTGTCTTAG+GGG 0.562136 4.2:+43157841 None:intergenic
AACTTGTTACCTCAGGAACT+GGG 0.572563 4.2:+43156832 None:intergenic
AGATGATTTGAAGAAGGTGA+AGG 0.573247 4.2:-43156335 MS.gene004152:CDS
AGGCCAGAGACAATGTGAGT+TGG 0.574082 4.2:-43155441 MS.gene004152:CDS
AGTTGGAACATTCTAGAGCA+AGG 0.576110 4.2:-43155760 MS.gene004152:CDS
CAGAAGAACGTGATAGCGCA+TGG 0.577018 4.2:-43156147 MS.gene004152:CDS
ATGATTCAGACAAAATAAGC+TGG 0.579255 4.2:+43156311 None:intergenic
TCAAACTAGTAAAATATCAA+AGG 0.580215 4.2:-43156895 MS.gene004152:CDS
GCAAGACTTCGAGGAATCCA+AGG 0.582107 4.2:-43156272 MS.gene004152:CDS
TACGAAACTCGGGATTGTGA+TGG 0.584576 4.2:-43155075 MS.gene004152:CDS
GAAACTCGGGATTGTGATGG+AGG 0.585195 4.2:-43155072 MS.gene004152:CDS
ATGTTCCAACTCCAAAGCAA+TGG 0.588382 4.2:+43155772 None:intergenic
TTAAGGTACAGTCTGATCAA+TGG 0.588594 4.2:-43154953 MS.gene004152:CDS
AGCCGAGGCTGCAAAACGCG+AGG 0.589775 4.2:-43155102 MS.gene004152:CDS
CTTGAATTGGTAGCTACTTG+TGG 0.590895 4.2:-43156031 MS.gene004152:CDS
TGAATTGAAAGCTGATATGA+TGG 0.591704 4.2:-43155231 MS.gene004152:CDS
CGAAGAAGAAGATACAGAGT+CGG 0.594385 4.2:+43156920 None:intergenic
GGATGACAGTAAAGTGAGAG+AGG 0.601699 4.2:-43155135 MS.gene004152:CDS
TGAAATATTGAGAAATGGGG+AGG 0.601938 4.2:-43155627 MS.gene004152:CDS
GAGTAGTCGTAGTTCTCAGT+TGG 0.604285 4.2:+43156949 None:intergenic
GGATGATTGTAAATTCGAGA+AGG 0.605294 4.2:-43155654 MS.gene004152:CDS
GTTGGAACATTCTAGAGCAA+GGG 0.613738 4.2:-43155759 MS.gene004152:CDS
ACCCAGAAGCCCAGTTCCTG+AGG 0.615333 4.2:-43156841 MS.gene004152:intron
ATGTCATCACAAAATGAACA+TGG 0.616779 4.2:-43155293 MS.gene004152:CDS
CTCAGTTGGCGTACAGCACG+CGG 0.616898 4.2:+43156963 None:intergenic
GACAAGGAAACCGAGTTGCA+AGG 0.617966 4.2:-43155362 MS.gene004152:CDS
CGAGGCTGCAAAACGCGAGG+CGG 0.620966 4.2:-43155099 MS.gene004152:CDS
AAGCAACCGTAAAGTGGCGA+GGG 0.625212 4.2:-43155039 MS.gene004152:CDS
ACAGTCTGATCAATGGAGGA+AGG 0.630704 4.2:-43154946 MS.gene004152:CDS
GCGAGGCGGTTACGAAACTC+GGG 0.631591 4.2:-43155085 MS.gene004152:CDS
AGTCAACTGAGAGATGCTGT+TGG 0.631624 4.2:+43156104 None:intergenic
ATTATTATTGTCCAAAGACA+CGG 0.631830 4.2:+43154863 None:intergenic
CAATGCATACCCCTAAGACA+AGG 0.632189 4.2:-43157850 MS.gene004152:intron
AAGTGAAATATTGAGAAATG+GGG 0.635977 4.2:-43155630 MS.gene004152:CDS
TCAATGGAGGAAGGCTGCAG+AGG 0.637395 4.2:-43154937 MS.gene004152:CDS
GAAGCAACCGTAAAGTGGCG+AGG 0.639605 4.2:-43155040 MS.gene004152:CDS
GAAGGCTAATCTAATGGACA+AGG 0.644778 4.2:-43155378 MS.gene004152:CDS
AGGTACAGTCTGATCAATGG+AGG 0.656687 4.2:-43154950 MS.gene004152:CDS
GTCATCCCTTAGAATCTCGA+CGG 0.658533 4.2:+43155823 None:intergenic
CTGCTGCTATGATTTCGGCA+GGG 0.663851 4.2:-43154911 MS.gene004152:CDS
AGAGGAAATAGAGAAAGCCG+AGG 0.674506 4.2:-43155117 MS.gene004152:CDS
AAGAACCGTCGAGATTCTAA+GGG 0.684529 4.2:-43155828 MS.gene004152:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATGAAAGATAAATTAA+AGG - chr4.2:43155878-43155897 MS.gene004152:CDS 10.0%
!!! ATACTAGTATTTTTTTTTAT+TGG - chr4.2:43155340-43155359 MS.gene004152:CDS 10.0%
!! AATACAAAAAAGTTATAATG+TGG + chr4.2:43155370-43155389 None:intergenic 15.0%
!! TTTATCTTTCATTATAGAAA+TGG + chr4.2:43155874-43155893 None:intergenic 15.0%
!!! TTTTGGATTTTTTTTTTCAT+AGG + chr4.2:43155051-43155070 None:intergenic 15.0%
!! AAAATCTTCTCAACTAAAAA+AGG + chr4.2:43156163-43156182 None:intergenic 20.0%
!! AAAGTGAAATATTGAGAAAT+GGG - chr4.2:43156966-43156985 MS.gene004152:CDS 20.0%
!! ATAATTAGGTGAATACTTAT+AGG + chr4.2:43157761-43157780 None:intergenic 20.0%
!! ATTGTTTAATAATGACAACT+AGG - chr4.2:43155485-43155504 MS.gene004152:CDS 20.0%
!! TACGAAAACAACATTTATAT+AGG + chr4.2:43154809-43154828 None:intergenic 20.0%
!! TCAAACTAGTAAAATATCAA+AGG - chr4.2:43155702-43155721 MS.gene004152:CDS 20.0%
!!! ATTCTGATAAGTTTTGATTT+AGG + chr4.2:43156640-43156659 None:intergenic 20.0%
!!! CAGAAGTAGTATTTTATTAT+TGG + chr4.2:43155795-43155814 None:intergenic 20.0%
!!! CATTGTGATAAAATGAATTT+TGG + chr4.2:43155068-43155087 None:intergenic 20.0%
!!! TTTTATTGAAATTTCAGAAG+TGG - chr4.2:43155580-43155599 MS.gene004152:CDS 20.0%
! AACAAATACAAAAACCAATG+TGG + chr4.2:43155552-43155571 None:intergenic 25.0%
! AAGGTTGTGGATTTAAAAAA+AGG + chr4.2:43154890-43154909 None:intergenic 25.0%
! AAGTGAAATATTGAGAAATG+GGG - chr4.2:43156967-43156986 MS.gene004152:CDS 25.0%
! ATCTAACATTTACAACAGAA+TGG - chr4.2:43155399-43155418 MS.gene004152:CDS 25.0%
! ATCTCTTCTTCAATATGATT+AGG + chr4.2:43156998-43157017 None:intergenic 25.0%
! ATTATTATTGTCCAAAGACA+CGG + chr4.2:43157737-43157756 None:intergenic 25.0%
! CCAAACAAAGTCTATATTTA+AGG + chr4.2:43155819-43155838 None:intergenic 25.0%
! CCTTAAATATAGACTTTGTT+TGG - chr4.2:43155816-43155835 MS.gene004152:CDS 25.0%
! GAAAGTGAAATATTGAGAAA+TGG - chr4.2:43156965-43156984 MS.gene004152:CDS 25.0%
! TATAATTGATGTTGCATTAG+AGG - chr4.2:43156189-43156208 MS.gene004152:CDS 25.0%
! TTGTTCTTGATATTTAGTCT+CGG + chr4.2:43157071-43157090 None:intergenic 25.0%
!! TCATTATTGTGTTTCCTTTT+TGG - chr4.2:43155213-43155232 MS.gene004152:CDS 25.0%
!! TGTCATTGATTAGTTCTTTA+TGG + chr4.2:43155100-43155119 None:intergenic 25.0%
!! TGTTGACTGAATAAAACAAA+AGG + chr4.2:43155315-43155334 None:intergenic 25.0%
AAATGAACATGGACTTCAAA+AGG - chr4.2:43157315-43157334 MS.gene004152:intron 30.0%
AACTGATATTGAAGAGTTGA+AGG - chr4.2:43157201-43157220 MS.gene004152:intron 30.0%
ACAAAAACCAATGTGGTAAA+TGG + chr4.2:43155545-43155564 None:intergenic 30.0%
ACTTCAAGATGATTTGAAGA+AGG - chr4.2:43156256-43156275 MS.gene004152:CDS 30.0%
AGTTACCATTTATGTGTGAA+AGG - chr4.2:43155450-43155469 MS.gene004152:CDS 30.0%
ATGATTCAGACAAAATAAGC+TGG + chr4.2:43156289-43156308 None:intergenic 30.0%
ATGTCATCACAAAATGAACA+TGG - chr4.2:43157304-43157323 MS.gene004152:intron 30.0%
ATTCAGTTGATTATCCAAAC+TGG - chr4.2:43156069-43156088 MS.gene004152:CDS 30.0%
ATTTAGGCAAGGTCATAAAA+GGG + chr4.2:43155173-43155192 None:intergenic 30.0%
GATTTCCAGAGAAAGAAAAA+TGG - chr4.2:43157799-43157818 MS.gene004152:intron 30.0%
TCAAAAGGAACTCAAAAGAT+TGG - chr4.2:43157330-43157349 MS.gene004152:intron 30.0%
TCAACATCTTCAGCATAATT+AGG + chr4.2:43157775-43157794 None:intergenic 30.0%
TCATTCTGTTCAAAATCTTG+TGG - chr4.2:43156922-43156941 MS.gene004152:CDS 30.0%
TGAATTGAAAGCTGATATGA+TGG - chr4.2:43157366-43157385 MS.gene004152:intron 30.0%
TGAGACATGATTATGCATTT+AGG + chr4.2:43155189-43155208 None:intergenic 30.0%
TTCAGTTGATTATCCAAACT+GGG - chr4.2:43156070-43156089 MS.gene004152:CDS 30.0%
TTGAAGATTACCTTGTCTTA+GGG + chr4.2:43154760-43154779 None:intergenic 30.0%
TTTGAAGATTACCTTGTCTT+AGG + chr4.2:43154761-43154780 None:intergenic 30.0%
! CATTTTATCACAATGCATCA+AGG - chr4.2:43155073-43155092 MS.gene004152:CDS 30.0%
! TCCAATTCAGATATTTTGCT+CGG + chr4.2:43156221-43156240 None:intergenic 30.0%
!! TGTTACCATTTTTCTTTCTC+TGG + chr4.2:43157807-43157826 None:intergenic 30.0%
!!! GAGTTGTTACCTCTTTTTTA+AGG - chr4.2:43155287-43155306 MS.gene004152:CDS 30.0%
AAATGGAAAGCGAACTAAGA+AGG - chr4.2:43157620-43157639 MS.gene004152:intron 35.0%
AAGTTATACAATGCCCAGTT+TGG + chr4.2:43156086-43156105 None:intergenic 35.0%
AGAGTTGAAGGCTAATCTAA+TGG - chr4.2:43157213-43157232 MS.gene004152:intron 35.0%
AGATGATTTGAAGAAGGTGA+AGG - chr4.2:43156262-43156281 MS.gene004152:CDS 35.0%
ATCAGAATCACTTTCTCAGA+TGG - chr4.2:43156652-43156671 MS.gene004152:intron 35.0%
ATGTGGATATCTCTCTTAGT+CGG + chr4.2:43154985-43155004 None:intergenic 35.0%
CAGTTCCTTTCACACATAAA+TGG + chr4.2:43155458-43155477 None:intergenic 35.0%
CATGATTATGCATTTAGGCA+AGG + chr4.2:43155184-43155203 None:intergenic 35.0%
CATTTAGGCAAGGTCATAAA+AGG + chr4.2:43155174-43155193 None:intergenic 35.0%
GAAAATCAACAAGAGTTGCT+TGG - chr4.2:43157441-43157460 MS.gene004152:intron 35.0%
GATATCCACATTTAGTTGAG+AGG - chr4.2:43154994-43155013 MS.gene004152:CDS 35.0%
GGATGATTGTAAATTCGAGA+AGG - chr4.2:43156943-43156962 MS.gene004152:CDS 35.0%
TCAAACTCAACAAGCTGAAT+CGG - chr4.2:43156595-43156614 MS.gene004152:intron 35.0%
TCATAGGTTTCTTCAACAAG+AGG + chr4.2:43155035-43155054 None:intergenic 35.0%
TCTTAGTTCGCTTTCCATTT+CGG + chr4.2:43157620-43157639 None:intergenic 35.0%
TGAAATATTGAGAAATGGGG+AGG - chr4.2:43156970-43156989 MS.gene004152:CDS 35.0%
TGAAGATTACCTTGTCTTAG+GGG + chr4.2:43154759-43154778 None:intergenic 35.0%
TGAGTTTCCATTTACCACAT+TGG - chr4.2:43155535-43155554 MS.gene004152:CDS 35.0%
TGTTAATCAATAGAGCGGAA+GGG - chr4.2:43154921-43154940 MS.gene004152:CDS 35.0%
TTAAGGTACAGTCTGATCAA+TGG - chr4.2:43157644-43157663 MS.gene004152:intron 35.0%
TTGTTAATCAATAGAGCGGA+AGG - chr4.2:43154920-43154939 MS.gene004152:CDS 35.0%
TTTATGTGTGAAAGGAACTG+AGG - chr4.2:43155458-43155477 MS.gene004152:CDS 35.0%
! CCAATTCAGATATTTTGCTC+GGG + chr4.2:43156220-43156239 None:intergenic 35.0%
! GTTGATGGAGCAGATAAAAT+CGG - chr4.2:43157129-43157148 MS.gene004152:intron 35.0%
! TCCGCTCTATTGATTAACAA+GGG + chr4.2:43154920-43154939 None:intergenic 35.0%
! TGAAGAAGTTTGGAGTCTTA+TGG - chr4.2:43157830-43157849 MS.gene004152:intron 35.0%
! TTCCGCTCTATTGATTAACA+AGG + chr4.2:43154921-43154940 None:intergenic 35.0%
!! CAAAAGGTGCCTTAAAAAAG+AGG + chr4.2:43155299-43155318 None:intergenic 35.0%
!! GTTCTTTGCTATTCTTGAGT+TGG + chr4.2:43156691-43156710 None:intergenic 35.0%
!! TGGTAAAAACTTGTTACCTC+AGG + chr4.2:43155775-43155794 None:intergenic 35.0%
!! TGTTCTTTGAAGTCTGAGAT+TGG - chr4.2:43157019-43157038 MS.gene004152:intron 35.0%
!!! GTTTCCTTTTTGGTTGAAGT+AGG - chr4.2:43155223-43155242 MS.gene004152:CDS 35.0%
AAAAGAGGTAACAACTCCCT+TGG + chr4.2:43155284-43155303 None:intergenic 40.0%
AAAGAACCGTCGAGATTCTA+AGG - chr4.2:43156768-43156787 MS.gene004152:intron 40.0%
AAAGAGGTAACAACTCCCTT+GGG + chr4.2:43155283-43155302 None:intergenic 40.0%
AAGAACCGTCGAGATTCTAA+GGG - chr4.2:43156769-43156788 MS.gene004152:intron 40.0%
AAGATTTGTGCCTGAGTTTC+AGG + chr4.2:43156713-43156732 None:intergenic 40.0%
AAGCACTTGTGAGACTGTTT+GGG + chr4.2:43155959-43155978 None:intergenic 40.0%
AAGCGAACTAAGAAGGCTTA+AGG - chr4.2:43157627-43157646 MS.gene004152:intron 40.0%
AGTCTCACAAGTGCTTATGT+CGG - chr4.2:43155963-43155982 MS.gene004152:CDS 40.0%
ATCTCCCATTCGTCAGTTAA+AGG + chr4.2:43155255-43155274 None:intergenic 40.0%
ATGTTCCAACTCCAAAGCAA+TGG + chr4.2:43156828-43156847 None:intergenic 40.0%
CACATTGCTAGCATTGCTTT+CGG - chr4.2:43156128-43156147 MS.gene004152:CDS 40.0%
CCCCTTGTTAATCAATAGAG+CGG - chr4.2:43154916-43154935 MS.gene004152:CDS 40.0%
CCCGAGCAAAATATCTGAAT+TGG - chr4.2:43156217-43156236 MS.gene004152:CDS 40.0%
CGAAGAAGAAGATACAGAGT+CGG + chr4.2:43155680-43155699 None:intergenic 40.0%
CTTTAGCATCTCGTTCTCTT+CGG + chr4.2:43157419-43157438 None:intergenic 40.0%
GAGCAGATAAAATCGGAATC+AGG - chr4.2:43157136-43157155 MS.gene004152:intron 40.0%
GATTAACAAGGGGAGTCATA+AGG + chr4.2:43154909-43154928 None:intergenic 40.0%
GGAACCTACTTCAACCAAAA+AGG + chr4.2:43155230-43155249 None:intergenic 40.0%
GGTAACATGCTGAAGAAGTT+TGG - chr4.2:43157820-43157839 MS.gene004152:intron 40.0%
GTTAATCAATAGAGCGGAAG+GGG - chr4.2:43154922-43154941 MS.gene004152:CDS 40.0%
TAACTGACGAATGGGAGATT+GGG - chr4.2:43155256-43155275 MS.gene004152:CDS 40.0%
TAAGCACTTGTGAGACTGTT+TGG + chr4.2:43155960-43155979 None:intergenic 40.0%
TAGCAAAGAACCTGAAACTC+AGG - chr4.2:43156700-43156719 MS.gene004152:intron 40.0%
TCTCCCATTCGTCAGTTAAA+GGG + chr4.2:43155254-43155273 None:intergenic 40.0%
TGCTTTGTCTTCTGCATTGA+AGG - chr4.2:43156520-43156539 MS.gene004152:intron 40.0%
TGTGGATATCTCTCTTAGTC+GGG + chr4.2:43154984-43155003 None:intergenic 40.0%
TTAACTGACGAATGGGAGAT+TGG - chr4.2:43155255-43155274 MS.gene004152:CDS 40.0%
TTCCATGATACCTTGCAACT+CGG + chr4.2:43157248-43157267 None:intergenic 40.0%
! CACGTTCTTCTGTGATTTTC+TGG + chr4.2:43156442-43156461 None:intergenic 40.0%
! CCGCTCTATTGATTAACAAG+GGG + chr4.2:43154919-43154938 None:intergenic 40.0%
! CTTGAATTGGTAGCTACTTG+TGG - chr4.2:43156566-43156585 MS.gene004152:intron 40.0%
! GAAGGCTAATCTAATGGACA+AGG - chr4.2:43157219-43157238 MS.gene004152:intron 40.0%
! GCTGAAAGCACAACTTGAAT+TGG - chr4.2:43156553-43156572 MS.gene004152:intron 40.0%
! TATCTAGAGCTATGTGCTAC+TGG - chr4.2:43156395-43156414 MS.gene004152:intron 40.0%
!! AAACTTGTTACCTCAGGAAC+TGG + chr4.2:43155769-43155788 None:intergenic 40.0%
!! AACTTGTTACCTCAGGAACT+GGG + chr4.2:43155768-43155787 None:intergenic 40.0%
!! ACTCTTCGAGTTTTCCAGAT+AGG + chr4.2:43156364-43156383 None:intergenic 40.0%
!! AGTTGGAACATTCTAGAGCA+AGG - chr4.2:43156837-43156856 MS.gene004152:intron 40.0%
!! CTCTTCGAGTTTTCCAGATA+GGG + chr4.2:43156363-43156382 None:intergenic 40.0%
!! CTTTGAAGTCTGAGATTGGA+CGG - chr4.2:43157023-43157042 MS.gene004152:intron 40.0%
!! GTTGGAACATTCTAGAGCAA+GGG - chr4.2:43156838-43156857 MS.gene004152:intron 40.0%
ACAGTCTGATCAATGGAGGA+AGG - chr4.2:43157651-43157670 MS.gene004152:intron 45.0%
AGACAGAAGCAACCGTAAAG+TGG - chr4.2:43157552-43157571 MS.gene004152:intron 45.0%
AGAGGAAATAGAGAAAGCCG+AGG - chr4.2:43157480-43157499 MS.gene004152:intron 45.0%
AGGCACCTCTCAACTAAATG+TGG + chr4.2:43155002-43155021 None:intergenic 45.0%
AGGTACAGTCTGATCAATGG+AGG - chr4.2:43157647-43157666 MS.gene004152:intron 45.0%
AGTCAACTGAGAGATGCTGT+TGG + chr4.2:43156496-43156515 None:intergenic 45.0%
ATGATTTCGGCAGGGAACAA+TGG - chr4.2:43157694-43157713 MS.gene004152:intron 45.0%
CAACAAGAGGTCATCGTATC+AGG + chr4.2:43155022-43155041 None:intergenic 45.0%
CCTCCCTTTAACTGACGAAT+GGG - chr4.2:43155248-43155267 MS.gene004152:CDS 45.0%
GAGTAGTCGTAGTTCTCAGT+TGG + chr4.2:43155651-43155670 None:intergenic 45.0%
GGATGACAGTAAAGTGAGAG+AGG - chr4.2:43157462-43157481 MS.gene004152:intron 45.0%
GTCAACTGAGAGATGCTGTT+GGG + chr4.2:43156495-43156514 None:intergenic 45.0%
GTCATCCCTTAGAATCTCGA+CGG + chr4.2:43156777-43156796 None:intergenic 45.0%
TACGAAACTCGGGATTGTGA+TGG - chr4.2:43157522-43157541 MS.gene004152:intron 45.0%
TACTGAGAGATCCGTGTCTT+TGG - chr4.2:43157723-43157742 MS.gene004152:intron 45.0%
TCCTCCCTTTAACTGACGAA+TGG - chr4.2:43155247-43155266 MS.gene004152:CDS 45.0%
TGATTTCGGCAGGGAACAAT+GGG - chr4.2:43157695-43157714 MS.gene004152:intron 45.0%
! AACCGAGTTGCAAGGTATCA+TGG - chr4.2:43157243-43157262 MS.gene004152:intron 45.0%
! CAGAAGTGGTTCTTCTGAAG+TGG - chr4.2:43155594-43155613 MS.gene004152:CDS 45.0%
!! CAACTCCATTGCTTTGGAGT+TGG - chr4.2:43156820-43156839 MS.gene004152:intron 45.0%
!! TTGTGCTGCTTCTAACTGCT+CGG + chr4.2:43157587-43157606 None:intergenic 45.0%
AAGCAACCGTAAAGTGGCGA+GGG - chr4.2:43157558-43157577 MS.gene004152:intron 50.0%
AATGGGAGATTGGGACCCAA+GGG - chr4.2:43155265-43155284 MS.gene004152:CDS 50.0%
ACAAGTGGCAAGCTCCGAAA+TGG - chr4.2:43157603-43157622 MS.gene004152:intron 50.0%
AGGCCAGAGACAATGTGAGT+TGG - chr4.2:43157156-43157175 MS.gene004152:intron 50.0%
CAAGGGGAGTCATAAGGTTG+TGG + chr4.2:43154903-43154922 None:intergenic 50.0%
CCCATTCGTCAGTTAAAGGG+AGG + chr4.2:43155251-43155270 None:intergenic 50.0%
CCTCCAACTCACATTGTCTC+TGG + chr4.2:43157162-43157181 None:intergenic 50.0%
CTGCTGCTATGATTTCGGCA+GGG - chr4.2:43157686-43157705 MS.gene004152:intron 50.0%
GAAACTCGGGATTGTGATGG+AGG - chr4.2:43157525-43157544 MS.gene004152:intron 50.0%
GACAAGGAAACCGAGTTGCA+AGG - chr4.2:43157235-43157254 MS.gene004152:intron 50.0%
GAGCAACTCTTAGCCCTATC+TGG - chr4.2:43156347-43156366 MS.gene004152:CDS 50.0%
GCAAGACTTCGAGGAATCCA+AGG - chr4.2:43156325-43156344 MS.gene004152:CDS 50.0%
GCACGCGGAGAAACTTTCTT+AGG + chr4.2:43155622-43155641 None:intergenic 50.0%
GCAGTTAGAAGCAGCACAAG+TGG - chr4.2:43157588-43157607 MS.gene004152:intron 50.0%
GGCAGCTGCTGCTATGATTT+CGG - chr4.2:43157681-43157700 MS.gene004152:intron 50.0%
TAGGGCTAAGAGTTGCTCCT+TGG + chr4.2:43156345-43156364 None:intergenic 50.0%
TGGCTGCAACTCCATTGCTT+TGG - chr4.2:43156814-43156833 MS.gene004152:intron 50.0%
! ACGTGATAGCGCATGGAAGT+CGG - chr4.2:43156457-43156476 MS.gene004152:intron 50.0%
! CAGAAGAACGTGATAGCGCA+TGG - chr4.2:43156450-43156469 MS.gene004152:intron 50.0%
! CAGCAATGCGTACGAGTTGA+TGG - chr4.2:43157114-43157133 MS.gene004152:intron 50.0%
! CCAGAGACAATGTGAGTTGG+AGG - chr4.2:43157159-43157178 MS.gene004152:intron 50.0%
! TGACTTGCGATCAGCGAGTT+TGG + chr4.2:43155737-43155756 None:intergenic 50.0%
ACCTCAGGAACTGGGCTTCT+GGG + chr4.2:43155760-43155779 None:intergenic 55.0%
GAAGCAACCGTAAAGTGGCG+AGG - chr4.2:43157557-43157576 MS.gene004152:intron 55.0%
GAATGGGAGATTGGGACCCA+AGG - chr4.2:43155264-43155283 MS.gene004152:CDS 55.0%
GACGTTGCGAGAGACGTAGA+TGG - chr4.2:43156794-43156813 MS.gene004152:intron 55.0%
GCAAGCTCAGCAAGACTTCG+AGG - chr4.2:43156316-43156335 MS.gene004152:CDS 55.0%
GCTGCTGCTATGATTTCGGC+AGG - chr4.2:43157685-43157704 MS.gene004152:intron 55.0%
TACCTCAGGAACTGGGCTTC+TGG + chr4.2:43155761-43155780 None:intergenic 55.0%
TCAATGGAGGAAGGCTGCAG+AGG - chr4.2:43157660-43157679 MS.gene004152:intron 55.0%
ACCCAGAAGCCCAGTTCCTG+AGG - chr4.2:43155756-43155775 MS.gene004152:CDS 60.0%
CGCGAGGCGGTTACGAAACT+CGG - chr4.2:43157511-43157530 MS.gene004152:intron 60.0%
CTCAGTTGGCGTACAGCACG+CGG + chr4.2:43155637-43155656 None:intergenic 60.0%
GCGAGGCGGTTACGAAACTC+GGG - chr4.2:43157512-43157531 MS.gene004152:intron 60.0%
! CGGTCACCCTCGCCACTTTA+CGG + chr4.2:43157567-43157586 None:intergenic 60.0%
AGCCGAGGCTGCAAAACGCG+AGG - chr4.2:43157495-43157514 MS.gene004152:intron 65.0%
CGAGGCTGCAAAACGCGAGG+CGG - chr4.2:43157498-43157517 MS.gene004152:intron 65.0%
! CGCCTCGCGTTTTGCAGCCT+CGG + chr4.2:43157500-43157519 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 43154749 43157870 43154749 ID=MS.gene004152
chr4.2 mRNA 43154749 43157870 43154749 ID=MS.gene004152.t1;Parent=MS.gene004152
chr4.2 exon 43157851 43157870 43157851 ID=MS.gene004152.t1.exon1;Parent=MS.gene004152.t1
chr4.2 CDS 43157851 43157870 43157851 ID=cds.MS.gene004152.t1;Parent=MS.gene004152.t1
chr4.2 exon 43156842 43157022 43156842 ID=MS.gene004152.t1.exon2;Parent=MS.gene004152.t1
chr4.2 CDS 43156842 43157022 43156842 ID=cds.MS.gene004152.t1;Parent=MS.gene004152.t1
chr4.2 exon 43154749 43156410 43154749 ID=MS.gene004152.t1.exon3;Parent=MS.gene004152.t1
chr4.2 CDS 43154749 43156410 43154749 ID=cds.MS.gene004152.t1;Parent=MS.gene004152.t1
Gene Sequence

>MS.gene004152

ATGCATACCCCTAAGACAAGGTAATCTTCAAATACTACTTTGACTATTACTCTTTTTCCTATATAAATGTTGTTTTCGTACTTTACTATTGCTATATTTTAGAAAGCAAAAGCATAATCAACTTAGCTGAATTTTGTTCCTTTTTTTAAATCCACAACCTTATGACTCCCCTTGTTAATCAATAGAGCGGAAGGGGTTAGACGCTCACAACGTGACGAACAAATTTTTGAATCCCGACTAAGAGAGATATCCACATTTAGTTGAGAGGTGCCTGATACGATGACCTCTTGTTGAAGAAACCTATGAAAAAAAAAATCCAAAATTCATTTTATCACAATGCATCAAGGACCATAAAGAACTAATCAATGACATTAAGCAATTTGCAATTAGTGAATAGAATAGAGTAAGTGTTAAGTTTTTACCCTTTTATGACCTTGCCTAAATGCATAATCATGTCTCATTAGTCATTATTGTGTTTCCTTTTTGGTTGAAGTAGGTTCCTCCCTTTAACTGACGAATGGGAGATTGGGACCCAAGGGAGTTGTTACCTCTTTTTTAAGGCACCTTTTGTTTTATTCAGTCAACAAAAACATACTAGTATTTTTTTTTATTGGATTGCCACATTATAACTTTTTTGTATTTAGAATATCATCTAACATTTACAACAGAATGGTTAGAGTATCATGTAACATAAGAATTTGAGTTACCATTTATGTGTGAAAGGAACTGAGGATTTATTGTTTAATAATGACAACTAGGTATAAATTGATTAAAATGATAGATATATGAGTTTCCATTTACCACATTGGTTTTTGTATTTGTTAAACATTTTTTTATTGAAATTTCAGAAGTGGTTCTTCTGAAGTGGTGCCTAAGAAAGTTTCTCCGCGTGCTGTACGCCAACTGAGAACTACGACTACTCTAGATACCGACTCTGTATCTTCTTCTTCGACTCAAACTAGTAAAATATCAAAGGAAAGAAGCTCCAAACTCGCTGATCGCAAGTCACCCAGAAGCCCAGTTCCTGAGGTAACAAGTTTTTACCAATAATAAAATACTACTTCTGTCCTTAAATATAGACTTTGTTTGGATAAATAGCTTAATTAAACGCTTACGTATAAGCCATTTCTATAATGAAAGATAAATTAAAGGCAAACTGTTTTCATATATGTTATAAGTTCTTTTCATAACTGTTATCATAAGTTCTCCCAAACAGTCTCACAAGTGCTTATGTCGGTAGAGAGCTTGTATAACAACTTATATGAAAACATTTTGACTTTATTTTATCAGCTATTATAGAAATAACTTGATAAGCACTAAATTCAGTTGATTATCCAAACTGGGCATTGTATAACTTTTATTCAATAATAAGTGTATAGCACATTGCTAGCATTGCTTTCGGTACATTTTTCCTTTTTTAGTTGAGAAGATTTTAACTATTATAATTGATGTTGCATTAGAGGAAACGCCCGAGCAAAATATCTGAATTGGAATCTCAAATTTCTCAACTTCAAGATGATTTGAAGAAGGTGAAGGACCAGCTTATTTTGTCTGAATCATGCAAGAAGCAAGCTCAGCAAGACTTCGAGGAATCCAAGGAGCAACTCTTAGCCCTATCTGGAAAACTCGAAGAGTCTCAAAAGCAATATCTAGAGCTATGTGCTACTGGAGAAGCTCGCGATATCGAACTCCAGAAAATCACAGAAGAACGTGATAGCGCATGGAAGTCGGAGCTCGATGTCTCCCAACAGCATCTCTCAGTTGACTCTACTGCTTTGTCTTCTGCATTGAAGGAAATTCAGCTGCTGAAAGCACAACTTGAATTGGTAGCTACTTGTGGTAGTGTTCAAACTCAACAAGCTGAATCGGCAGATGAAGAGCTACTGAACCTAAATCAAAACTTATCAGAATCACTTTCTCAGATGGAGAACATAAAAAACCAACTCAAGAATAGCAAAGAACCTGAAACTCAGGCACAAATCTTTATTGATGAAACTTTGTTGCAACTCAAGTCTGCGAAAAGAACCGTCGAGATTCTAAGGGATGACGTTGCGAGAGACGTAGATGGCTGCAACTCCATTGCTTTGGAGTTGGAACATTCTAGAGCAAGGGTGAACACGCTAGCAACACTTGTTAGCAAATTTAAGACACGCATCAACGATAATGAATCGATTCATTCTGTTCAAAATCTTGTGGATGATTGTAAATTCGAGAAGGAAAGTGAAATATTGAGAAATGGGGAGGATCCTAATCATATTGAAGAAGAGATTTGTTCTTTGAAGTCTGAGATTGGACGGCTGAGATCTGCTGTAGAGACTGCCGAGACTAAATATCAAGAACAACAGATTCAAAGCACAGTGCAAATCAGCAATGCGTACGAGTTGATGGAGCAGATAAAATCGGAATCAGGCCAGAGACAATGTGAGTTGGAGGCTGAATTACAAAGAAAGAAAACTGATATTGAAGAGTTGAAGGCTAATCTAATGGACAAGGAAACCGAGTTGCAAGGTATCATGGAAGAGAATGAGAATTTGAATTCGAAACTCGAAAAGAATATGTCATCACAAAATGAACATGGACTTCAAAAGGAACTCAAAAGATTGGAAGAATGTGTTGCTGAATTGAAAGCTGATATGATGGACAAAGAAACAACATTGCAAAGCATATCCGAAGAGAACGAGATGCTAAAGATGAAAATCAACAAGAGTTGCTTGGATGACAGTAAAGTGAGAGAGGAAATAGAGAAAGCCGAGGCTGCAAAACGCGAGGCGGTTACGAAACTCGGGATTGTGATGGAGGAAGCAGACAGAAGCAACCGTAAAGTGGCGAGGGTGACCGAGCAGTTAGAAGCAGCACAAGTGGCAAGCTCCGAAATGGAAAGCGAACTAAGAAGGCTTAAGGTACAGTCTGATCAATGGAGGAAGGCTGCAGAGGCAGCTGCTGCTATGATTTCGGCAGGGAACAATGGGAAGCTTACTGAGAGATCCGTGTCTTTGGACAATAATAATACCTATAAGTATTCACCTAATTATGCTGAAGATGTTGATGATGATTTCCAGAGAAAGAAAAATGGTAACATGCTGAAGAAGTTTGGAGTCTTATGGAAGAAGCCTCAAAAATAG

Protein sequence

>MS.gene004152.t1

MHTPKTRSGSSEVVPKKVSPRAVRQLRTTTTLDTDSVSSSSTQTSKISKERSSKLADRKSPRSPVPERKRPSKISELESQISQLQDDLKKVKDQLILSESCKKQAQQDFEESKEQLLALSGKLEESQKQYLELCATGEARDIELQKITEERDSAWKSELDVSQQHLSVDSTALSSALKEIQLLKAQLELVATCGSVQTQQAESADEELLNLNQNLSESLSQMENIKNQLKNSKEPETQAQIFIDETLLQLKSAKRTVEILRDDVARDVDGCNSIALELEHSRARVNTLATLVSKFKTRINDNESIHSVQNLVDDCKFEKESEILRNGEDPNHIEEEICSLKSEIGRLRSAVETAETKYQEQQIQSTVQISNAYELMEQIKSESGQRQCELEAELQRKKTDIEELKANLMDKETELQGIMEENENLNSKLEKNMSSQNEHGLQKELKRLEECVAELKADMMDKETTLQSISEENEMLKMKINKSCLDDSKVREEIEKAEAAKREAVTKLGIVMEEADRSNRKVARVTEQLEAAQVASSEMESELRRLKVQSDQWRKAAEAAAAMISAGNNGKLTERSVSLDNNNTYKYSPNYAEDVDDDFQRKKNGNMLKKFGVLWKKPQK