AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049858


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049858.t1 MTR_4g461060 95.806 620 26 0 1 620 1 620 0.0 1116
MS.gene049858.t1 MTR_4g461060 95.772 615 26 0 6 620 3 617 0.0 1103
MS.gene049858.t1 MTR_7g100730 46.019 628 307 9 1 617 1 607 2.34e-141 424
MS.gene049858.t1 MTR_1g066850 44.374 631 289 10 1 617 1 583 2.76e-129 392
MS.gene049858.t1 MTR_2g093260 53.915 447 153 10 188 620 78 485 2.99e-120 366
MS.gene049858.t1 MTR_7g061150 46.825 378 173 7 248 617 3 360 1.11e-78 254
MS.gene049858.t1 MTR_2g093250 57.364 129 51 1 306 434 93 217 2.38e-32 125
MS.gene049858.t1 MTR_2g093240 45.370 108 30 2 513 620 3 81 1.26e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049858.t1 AT5G60210 44.712 624 281 13 1 620 1 564 1.41e-145 434
MS.gene049858.t1 AT5G60210 44.712 624 281 13 1 620 1 564 1.41e-145 434
MS.gene049858.t1 AT5G60210 44.712 624 281 13 1 620 1 564 1.41e-145 434
MS.gene049858.t1 AT5G60210 44.712 624 281 13 1 620 1 564 1.41e-145 434
MS.gene049858.t1 AT5G60210 44.588 619 279 13 6 620 30 588 1.11e-142 427
MS.gene049858.t1 AT5G60210 44.588 619 279 13 6 620 30 588 1.11e-142 427
MS.gene049858.t1 AT2G37080 40.402 646 294 13 1 620 1 581 1.21e-117 362
MS.gene049858.t1 AT2G37080 40.278 648 294 14 1 620 1 583 1.58e-115 357
MS.gene049858.t1 AT2G37080 40.278 648 294 14 1 620 1 583 1.58e-115 357
MS.gene049858.t1 AT3G53350 41.361 191 87 4 1 187 1 170 2.17e-29 120
MS.gene049858.t1 AT3G53350 30.725 345 112 11 277 620 176 394 7.16e-22 98.6
MS.gene049858.t1 AT3G53350 41.361 191 87 4 1 187 1 170 2.17e-29 120
MS.gene049858.t1 AT3G53350 30.725 345 112 11 277 620 176 394 7.16e-22 98.6
MS.gene049858.t1 AT3G53350 40.933 193 87 5 1 187 1 172 1.19e-27 115
MS.gene049858.t1 AT3G53350 30.725 345 112 11 277 620 178 396 7.39e-22 98.6
MS.gene049858.t1 AT3G53350 40.933 193 87 5 1 187 1 172 1.19e-27 115
MS.gene049858.t1 AT3G53350 30.725 345 112 11 277 620 178 396 7.39e-22 98.6
MS.gene049858.t1 AT3G53350 40.933 193 87 5 1 187 1 172 1.19e-27 115
MS.gene049858.t1 AT3G53350 30.725 345 112 11 277 620 178 396 7.39e-22 98.6
MS.gene049858.t1 AT3G53350 40.541 185 85 4 7 187 18 181 1.27e-25 110
MS.gene049858.t1 AT3G53350 31.786 280 85 8 341 620 232 405 1.74e-21 97.8
MS.gene049858.t1 AT3G53350 40.107 187 85 5 7 187 18 183 6.29e-24 105
MS.gene049858.t1 AT3G53350 31.786 280 85 8 341 620 234 407 1.80e-21 97.8
MS.gene049858.t1 AT3G53350 40.107 187 85 5 7 187 18 183 6.29e-24 105
MS.gene049858.t1 AT3G53350 31.786 280 85 8 341 620 234 407 1.80e-21 97.8
MS.gene049858.t1 AT3G53350 35.747 221 87 5 1 187 1 200 9.75e-24 104
MS.gene049858.t1 AT3G53350 31.786 280 85 8 341 620 251 424 1.86e-21 97.8
MS.gene049858.t1 AT1G78430 36.517 178 101 4 444 617 151 320 5.21e-18 85.9
MS.gene049858.t1 AT1G17140 33.702 181 99 4 449 617 169 340 1.11e-13 73.2
MS.gene049858.t1 AT1G17140 33.702 181 99 4 449 617 169 340 1.11e-13 73.2

Find 105 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTTGTGCCTGAGTTTC+AGG 0.158972 4.4:+44000771 None:intergenic
TACCTCAGGAACTGGGCTTC+TGG 0.169803 4.4:+44001723 None:intergenic
TTTGAAGATTACCTTGTCTT+AGG 0.184407 4.4:+44002724 None:intergenic
CGGTCACCCTTGCCACTTTA+CGG 0.281611 4.4:+43999917 None:intergenic
AAAGAACCGTCGAGATTCTA+AGG 0.289339 4.4:-44000713 MS.gene049858:CDS
TCAACATCTTCAGCATAATT+AGG 0.312004 4.4:+43999709 None:intergenic
ACCTCAGGAACTGGGCTTCT+GGG 0.316608 4.4:+44001724 None:intergenic
TACTGAGAGATCTGTGTCTT+TGG 0.319421 4.4:-43999758 MS.gene049858:CDS
TCTTAGTTCGCTTTCCATTT+CGG 0.319511 4.4:+43999864 None:intergenic
TGCTTTGTCTTCTGCATTGA+AGG 0.331152 4.4:-44000961 MS.gene049858:CDS
AGAGTTGAAGGCTAACTTAA+TGG 0.340326 4.4:-44000268 MS.gene049858:CDS
ATAATTAGGTGAATACTTAT+AGG 0.350218 4.4:+43999723 None:intergenic
TGACTTGCGATCAGCGAGTT+TGG 0.351529 4.4:+44001747 None:intergenic
GGTAACATGCTGAAGAAGTT+TGG 0.353831 4.4:-43999661 MS.gene049858:CDS
GCACGCGGAGAAACTTTCTT+AGG 0.360740 4.4:+44001862 None:intergenic
ATCTCTTCTTCAATATGATT+AGG 0.361618 4.4:+44000486 None:intergenic
CCCCAGCAAAATATCTGAAT+TGG 0.366490 4.4:-44001264 MS.gene049858:CDS
GAAAGTGAAATATTGAGAAT+TGG 0.380858 4.4:-44000516 MS.gene049858:CDS
TGAAGAAGTTTGGAGTCTTA+TGG 0.383316 4.4:-43999651 MS.gene049858:CDS
TTGAAGATTACCTTGTCTTA+GGG 0.385906 4.4:+44002725 None:intergenic
GTTCTTTGCTATTCTTGAGT+TGG 0.389004 4.4:+44000793 None:intergenic
CAACTCCGTTGCTTTGGAGT+TGG 0.389947 4.4:-44000661 MS.gene049858:CDS
TGGCTGCAACTCCGTTGCTT+TGG 0.390413 4.4:-44000667 MS.gene049858:CDS
AAACTTGTTACCTCAGGAAC+TGG 0.401038 4.4:+44001715 None:intergenic
GGCAGCTGCTGCTATGATTT+CGG 0.401359 4.4:-43999800 MS.gene049858:CDS
TCAAAAGGAACTCAAAAGAT+TGG 0.417608 4.4:-44000151 MS.gene049858:CDS
GTTAATCGAGCAGATAAAAT+CGG 0.424499 4.4:-44000352 MS.gene049858:CDS
GCTGAAAGCACAACTTGAAT+TGG 0.425528 4.4:-44000928 MS.gene049858:CDS
AACTGACATTGAAGAGTTGA+AGG 0.430605 4.4:-44000280 MS.gene049858:CDS
TATCTAGAGCTATGTGCTAC+TGG 0.432289 4.4:-44001086 MS.gene049858:CDS
CTTCAGCATCTCGTTATCTT+CGG 0.432946 4.4:+44000065 None:intergenic
CCTCCAACTCACATTGTCTC+TGG 0.446526 4.4:+44000322 None:intergenic
AAATGAACATGGACTTCAAA+AGG 0.449057 4.4:-44000166 MS.gene049858:CDS
GCAAGCTCAGCAAGACTTCG+AGG 0.450128 4.4:-44001165 MS.gene049858:CDS
CGCGAGGCGGTTACAAAACT+CGG 0.450489 4.4:-43999970 MS.gene049858:CDS
TCAAACTCAGCAAGCTGAAT+CGG 0.468567 4.4:-44000886 MS.gene049858:CDS
GAGCAGATAAAATCGGAATC+AGG 0.473575 4.4:-44000345 MS.gene049858:CDS
GCAGTTAGAAGCAGCACAAA+TGG 0.474766 4.4:-43999893 MS.gene049858:CDS
AACCGAGTTGCAAGGTATCA+TGG 0.481196 4.4:-44000238 MS.gene049858:CDS
AAGCGAACTAAGAAGGCTTA+AGG 0.481520 4.4:-43999854 MS.gene049858:CDS
TAGGGCTAAGAGTTGCTCCT+TGG 0.485611 4.4:+44001139 None:intergenic
CAGAAGTGGTTCTTCTGAAG+TGG 0.492122 4.4:-44001887 MS.gene049858:CDS
ACAAATGGCGAGCTCCGAAA+TGG 0.493863 4.4:-43999878 MS.gene049858:CDS
GAAAATCAACAAGAGTTGCT+TGG 0.499437 4.4:-44000040 MS.gene049858:CDS
CCAGAGACAATGTGAGTTGG+AGG 0.499761 4.4:-44000322 MS.gene049858:CDS
TGATTTCGGCAGGGAACAAT+GGG 0.505513 4.4:-43999786 MS.gene049858:CDS
ACTTCAAGATGATTTGAAGA+AGG 0.507940 4.4:-44001225 MS.gene049858:CDS
GTCAACCGAGAGATGCTGTT+GGG 0.508096 4.4:+44000989 None:intergenic
GCTGCTGCTATGATTTCGGC+AGG 0.511645 4.4:-43999796 MS.gene049858:CDS
ATGATTTCGGCAGGGAACAA+TGG 0.513538 4.4:-43999787 MS.gene049858:CDS
CTTTGAAGTCTGAGGTTGGA+CGG 0.514073 4.4:-44000458 MS.gene049858:CDS
TGTTCTTTGAAGTCTGAGGT+TGG 0.515335 4.4:-44000462 MS.gene049858:CDS
TTGTGCTGCTTCTAACTGCT+CGG 0.516433 4.4:+43999897 None:intergenic
TAGCAAAGAACCTGAAACTC+AGG 0.524331 4.4:-44000781 MS.gene049858:CDS
GACGTTGCGAGAGACGTAGA+TGG 0.528471 4.4:-44000687 MS.gene049858:CDS
TTGTTCTTGATGTTTAGTCT+CGG 0.530764 4.4:+44000413 None:intergenic
TCATTCTGATCAAAATATTG+TGG 0.535208 4.4:-44000559 MS.gene049858:CDS
AAATGGAAAGCGAACTAAGA+AGG 0.538764 4.4:-43999861 MS.gene049858:CDS
TTCCATGATACCTTGCAACT+CGG 0.542413 4.4:+44000236 None:intergenic
AGACAGAAGCAACCGTAAAG+TGG 0.543135 4.4:-43999929 MS.gene049858:CDS
ATCAGAATCACTTTCTCAGA+TGG 0.543609 4.4:-44000829 MS.gene049858:CDS
AGCCTCCCAACAGCATCTCT+CGG 0.547357 4.4:-44000994 MS.gene049858:CDS
TGAAGATTACCTTGTCTTAG+GGG 0.562136 4.4:+44002726 None:intergenic
GACTAGTAGTAGTCCTCAGT+TGG 0.570099 4.4:+44001833 None:intergenic
TGAAATATTGAGAATTGGAG+AGG 0.570445 4.4:-44000511 MS.gene049858:CDS
AACTTGTTACCTCAGGAACT+GGG 0.572563 4.4:+44001716 None:intergenic
AGATGATTTGAAGAAGGTGA+AGG 0.573247 4.4:-44001219 MS.gene049858:CDS
AGGCCAGAGACAATGTGAGT+TGG 0.574082 4.4:-44000325 MS.gene049858:CDS
AGTTGGAACATTCTAGAGCA+AGG 0.576110 4.4:-44000644 MS.gene049858:CDS
TACAAAACTCGGGATTGTGA+TGG 0.579923 4.4:-43999959 MS.gene049858:CDS
TCAAACTAGTAAAATATCAA+AGG 0.580215 4.4:-44001779 MS.gene049858:CDS
GCAAGACTTCGAGGAATCCA+AGG 0.582107 4.4:-44001156 MS.gene049858:CDS
TTAAGGTACAGTCTGATCAA+TGG 0.588594 4.4:-43999837 MS.gene049858:CDS
AGCCGAGGCTGCAAAACGCG+AGG 0.589775 4.4:-43999986 MS.gene049858:CDS
CTTGAATTGGTAGCTACTTG+TGG 0.590895 4.4:-44000915 MS.gene049858:CDS
TGAATTGAAAGCTGATATGA+TGG 0.591704 4.4:-44000115 MS.gene049858:CDS
AAAACTCGGGATTGTGATGG+AGG 0.597330 4.4:-43999956 MS.gene049858:CDS
ATGATTCAGACGAAATAAGC+TGG 0.598473 4.4:+44001195 None:intergenic
AACAAGAGTTGCTTGGATGA+CGG 0.600419 4.4:-44000033 MS.gene049858:CDS
CGCGTGCTGTACGCCAACTG+AGG 0.603861 4.4:-44001846 MS.gene049858:CDS
CTCAGTTGGCGTACAGCACG+CGG 0.606057 4.4:+44001847 None:intergenic
GGATGATTGTAAATTTGAGA+AGG 0.607049 4.4:-44000538 MS.gene049858:CDS
GATTTGTTCTTTGAAGTCTG+AGG 0.608142 4.4:-44000466 MS.gene049858:CDS
AAGCAACCGTAAAGTGGCAA+GGG 0.612662 4.4:-43999923 MS.gene049858:CDS
GTTGGAACATTCTAGAGCAA+GGG 0.613738 4.4:-44000643 MS.gene049858:CDS
ACCCAGAAGCCCAGTTCCTG+AGG 0.615333 4.4:-44001725 MS.gene049858:intron
ATGTCATCACAAAATGAACA+TGG 0.616779 4.4:-44000177 MS.gene049858:CDS
GACAAGGAAACCGAGTTGCA+AGG 0.617966 4.4:-44000246 MS.gene049858:CDS
GAAGCAACCGTAAAGTGGCA+AGG 0.619217 4.4:-43999924 MS.gene049858:CDS
CGAGGCTGCAAAACGCGAGG+CGG 0.620966 4.4:-43999983 MS.gene049858:CDS
ACAGTCTGATCAATGGAGGA+AGG 0.630704 4.4:-43999830 MS.gene049858:CDS
AACCGAGAGATGCTGTTGGG+AGG 0.630724 4.4:+44000992 None:intergenic
CAATGCATACCCCTAAGACA+AGG 0.632189 4.4:-44002735 MS.gene049858:intron
GGATGACGGTAAAGTGAGAG+AGG 0.633167 4.4:-44000019 MS.gene049858:CDS
GCGAGGCGGTTACAAAACTC+GGG 0.636685 4.4:-43999969 MS.gene049858:CDS
TCAATGGAGGAAGGCTGCAG+AGG 0.637395 4.4:-43999821 MS.gene049858:CDS
AGAACAACAGATTCAAAGCA+CGG 0.637414 4.4:-44000397 MS.gene049858:CDS
ATGTTCCAACTCCAAAGCAA+CGG 0.639004 4.4:+44000656 None:intergenic
AGTCAACCGAGAGATGCTGT+TGG 0.646162 4.4:+44000988 None:intergenic
AGGTACAGTCTGATCAATGG+AGG 0.656687 4.4:-43999834 MS.gene049858:CDS
GTCATCCCTTAGAATCTCGA+CGG 0.658533 4.4:+44000707 None:intergenic
CTGCTGCTATGATTTCGGCA+GGG 0.663851 4.4:-43999795 MS.gene049858:CDS
AGAGGAAATAGAGAAAGCCG+AGG 0.674506 4.4:-44000001 MS.gene049858:CDS
GAAGGCTAACTTAATGGACA+AGG 0.677385 4.4:-44000262 MS.gene049858:CDS
AAGAACCGTCGAGATTCTAA+GGG 0.684529 4.4:-44000712 MS.gene049858:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAACTATTATAATTGA+TGG - chr4.4:44000984-44001003 MS.gene049858:CDS 10.0%
!! AATACAAAAAAGTTATAATG+TGG + chr4.4:44000254-44000273 None:intergenic 15.0%
!! ATAATAACTGATAAAATAAG+CGG + chr4.4:44000847-44000866 None:intergenic 15.0%
!!! ATTTTGGATTTTTTTTTCAT+AGG + chr4.4:43999935-43999954 None:intergenic 15.0%
!!! TACTAGTACTTTTTTTTTAT+TGG - chr4.4:44000224-44000243 MS.gene049858:CDS 15.0%
!! AAAATCTTCTCAACTAAAAA+AGG + chr4.4:44001048-44001067 None:intergenic 20.0%
!! ATAATTAGGTGAATACTTAT+AGG + chr4.4:44002646-44002665 None:intergenic 20.0%
!! ATTGTTTAATAATGACAACA+AGG - chr4.4:44000369-44000388 MS.gene049858:CDS 20.0%
!! TACAAAATCTATGTTGTAAA+TGG + chr4.4:44000429-44000448 None:intergenic 20.0%
!! TACGAAAACAACATTTATAT+AGG + chr4.4:43999693-43999712 None:intergenic 20.0%
!! TCAAACTAGTAAAATATCAA+AGG - chr4.4:44000587-44000606 MS.gene049858:CDS 20.0%
!!! AATAACTTTTCTCTTTTTGA+AGG - chr4.4:44000870-44000889 MS.gene049858:CDS 20.0%
!!! ATTCTGATAAGTTTTGATTT+AGG + chr4.4:44001525-44001544 None:intergenic 20.0%
!!! CATTGTGATAAAATGAATTT+TGG + chr4.4:43999951-43999970 None:intergenic 20.0%
!!! TCATTATTGTATTTCCTTTT+TGG - chr4.4:44000096-44000115 MS.gene049858:CDS 20.0%
!!! TTTTATTGAAATTTCAGAAG+TGG - chr4.4:44000465-44000484 MS.gene049858:CDS 20.0%
! AAGGTTGTGGATTTAAAAAA+AGG + chr4.4:43999774-43999793 None:intergenic 25.0%
! ATCTAACATTTACAACAGAA+TGG - chr4.4:44000283-44000302 MS.gene049858:CDS 25.0%
! ATCTCTTCTTCAATATGATT+AGG + chr4.4:44001883-44001902 None:intergenic 25.0%
! ATGTAAGTTGTTTATACAAG+CGG + chr4.4:44000799-44000818 None:intergenic 25.0%
! ATTCTGTTGTAAATGTTAGA+TGG + chr4.4:44000284-44000303 None:intergenic 25.0%
! GAAAGTGAAATATTGAGAAT+TGG - chr4.4:44001850-44001869 MS.gene049858:CDS 25.0%
! GAAATTGCTTATCAAGTTAA+TGG + chr4.4:44000680-44000699 None:intergenic 25.0%
! TCATTCTGATCAAAATATTG+TGG - chr4.4:44001807-44001826 MS.gene049858:CDS 25.0%
! TGGATAATCAACTTAGTTTA+GGG + chr4.4:44000917-44000936 None:intergenic 25.0%
! TTGGATAATCAACTTAGTTT+AGG + chr4.4:44000918-44000937 None:intergenic 25.0%
!! TGTCATTGATTAGTTCTTTA+TGG + chr4.4:43999983-44000002 None:intergenic 25.0%
AAATGAACATGGACTTCAAA+AGG - chr4.4:44002200-44002219 MS.gene049858:intron 30.0%
ACTTCAAGATGATTTGAAGA+AGG - chr4.4:44001141-44001160 MS.gene049858:CDS 30.0%
AGTTACCATTTATGTGTGAA+AGG - chr4.4:44000334-44000353 MS.gene049858:CDS 30.0%
ATGTCATCACAAAATGAACA+TGG - chr4.4:44002189-44002208 MS.gene049858:intron 30.0%
ATTTAGGCAAGGTGATAAAA+GGG + chr4.4:44000056-44000075 None:intergenic 30.0%
GATTTCCAGAGAAAGAAAAA+TGG - chr4.4:44002684-44002703 MS.gene049858:intron 30.0%
GGATGATTGTAAATTTGAGA+AGG - chr4.4:44001828-44001847 MS.gene049858:CDS 30.0%
GTTAATCGAGCAGATAAAAT+CGG - chr4.4:44002014-44002033 MS.gene049858:intron 30.0%
TATGATTGATGTTGCATTAG+AGG - chr4.4:44001074-44001093 MS.gene049858:CDS 30.0%
TCAAAAGGAACTCAAAAGAT+TGG - chr4.4:44002215-44002234 MS.gene049858:intron 30.0%
TCAACATCTTCAGCATAATT+AGG + chr4.4:44002660-44002679 None:intergenic 30.0%
TGAAATATTGAGAATTGGAG+AGG - chr4.4:44001855-44001874 MS.gene049858:CDS 30.0%
TGAATTGAAAGCTGATATGA+TGG - chr4.4:44002251-44002270 MS.gene049858:intron 30.0%
TGAGACATGATTATGCATTT+AGG + chr4.4:44000072-44000091 None:intergenic 30.0%
TGTTGACCGAATAAAACAAA+AGG + chr4.4:44000198-44000217 None:intergenic 30.0%
TTGAAGATTACCTTGTCTTA+GGG + chr4.4:43999644-43999663 None:intergenic 30.0%
TTGTTCTTGATGTTTAGTCT+CGG + chr4.4:44001956-44001975 None:intergenic 30.0%
TTTGAAGATTACCTTGTCTT+AGG + chr4.4:43999645-43999664 None:intergenic 30.0%
! CATTTTATCACAATGCATCA+AGG - chr4.4:43999956-43999975 MS.gene049858:CDS 30.0%
! TCCAATTCAGATATTTTGCT+GGG + chr4.4:44001106-44001125 None:intergenic 30.0%
! TTCCAATTCAGATATTTTGC+TGG + chr4.4:44001107-44001126 None:intergenic 30.0%
!! ACAACAAGGTATAAGTTGAT+TGG - chr4.4:44000383-44000402 MS.gene049858:CDS 30.0%
!! CTAAGTTGATTATCCAAACA+AGG - chr4.4:44000921-44000940 MS.gene049858:CDS 30.0%
!! GTTGTTTTCATAAGCTTTCT+TGG - chr4.4:44000748-44000767 MS.gene049858:CDS 30.0%
!! TGTTACCATTTTTCTTTCTC+TGG + chr4.4:44002692-44002711 None:intergenic 30.0%
!!! AAGGCACCTTTTGTTTTATT+CGG - chr4.4:44000189-44000208 MS.gene049858:CDS 30.0%
!!! ATTTCCTTTTTGGTTGAAGT+AGG - chr4.4:44000106-44000125 MS.gene049858:CDS 30.0%
!!! GAGTTGTTACCTCTTTTTTA+AGG - chr4.4:44000170-44000189 MS.gene049858:CDS 30.0%
AAATGGAAAGCGAACTAAGA+AGG - chr4.4:44002505-44002524 MS.gene049858:intron 35.0%
AACTGACATTGAAGAGTTGA+AGG - chr4.4:44002086-44002105 MS.gene049858:intron 35.0%
AGAACAACAGATTCAAAGCA+CGG - chr4.4:44001969-44001988 MS.gene049858:intron 35.0%
AGAGTTGAAGGCTAACTTAA+TGG - chr4.4:44002098-44002117 MS.gene049858:intron 35.0%
AGATGATTTGAAGAAGGTGA+AGG - chr4.4:44001147-44001166 MS.gene049858:CDS 35.0%
ATCAGAATCACTTTCTCAGA+TGG - chr4.4:44001537-44001556 MS.gene049858:intron 35.0%
ATGATTCAGACGAAATAAGC+TGG + chr4.4:44001174-44001193 None:intergenic 35.0%
ATGTGGATATCTCTCTTAGT+CGG + chr4.4:43999869-43999888 None:intergenic 35.0%
CAGTTCCTTTCACACATAAA+TGG + chr4.4:44000342-44000361 None:intergenic 35.0%
CATGATTATGCATTTAGGCA+AGG + chr4.4:44000067-44000086 None:intergenic 35.0%
CATTTAGGCAAGGTGATAAA+AGG + chr4.4:44000057-44000076 None:intergenic 35.0%
GAAAATCAACAAGAGTTGCT+TGG - chr4.4:44002326-44002345 MS.gene049858:intron 35.0%
GATATCCACATTTAGTTGAG+AGG - chr4.4:43999878-43999897 MS.gene049858:CDS 35.0%
TCATAGGTTTCTTCAACAAG+AGG + chr4.4:43999919-43999938 None:intergenic 35.0%
TCTTAGTTCGCTTTCCATTT+CGG + chr4.4:44002505-44002524 None:intergenic 35.0%
TGAAGATTACCTTGTCTTAG+GGG + chr4.4:43999643-43999662 None:intergenic 35.0%
TGTTAATCAATAGAGCGGAA+GGG - chr4.4:43999805-43999824 MS.gene049858:CDS 35.0%
TTAAGGTACAGTCTGATCAA+TGG - chr4.4:44002529-44002548 MS.gene049858:intron 35.0%
TTGTTAATCAATAGAGCGGA+AGG - chr4.4:43999804-43999823 MS.gene049858:CDS 35.0%
TTTATGTGTGAAAGGAACTG+AGG - chr4.4:44000342-44000361 MS.gene049858:CDS 35.0%
! AAGTTATGCATTGCCTTGTT+TGG + chr4.4:44000937-44000956 None:intergenic 35.0%
! CCAATTCAGATATTTTGCTG+GGG + chr4.4:44001105-44001124 None:intergenic 35.0%
! TCCGCTCTATTGATTAACAA+GGG + chr4.4:43999804-43999823 None:intergenic 35.0%
! TGAAGAAGTTTGGAGTCTTA+TGG - chr4.4:44002715-44002734 MS.gene049858:intron 35.0%
! TTCCGCTCTATTGATTAACA+AGG + chr4.4:43999805-43999824 None:intergenic 35.0%
!! CAAAAGGTGCCTTAAAAAAG+AGG + chr4.4:44000182-44000201 None:intergenic 35.0%
!! GATTTGTTCTTTGAAGTCTG+AGG - chr4.4:44001900-44001919 MS.gene049858:intron 35.0%
!! GTTCTTTGCTATTCTTGAGT+TGG + chr4.4:44001576-44001595 None:intergenic 35.0%
!! TGGTAAAAACTTGTTACCTC+AGG + chr4.4:44000660-44000679 None:intergenic 35.0%
AAAAGAGGTAACAACTCCCT+TGG + chr4.4:44000167-44000186 None:intergenic 40.0%
AAAGAACCGTCGAGATTCTA+AGG - chr4.4:44001653-44001672 MS.gene049858:intron 40.0%
AAAGAGGTAACAACTCCCTT+GGG + chr4.4:44000166-44000185 None:intergenic 40.0%
AACAAGAGTTGCTTGGATGA+CGG - chr4.4:44002333-44002352 MS.gene049858:intron 40.0%
AAGAACCGTCGAGATTCTAA+GGG - chr4.4:44001654-44001673 MS.gene049858:intron 40.0%
AAGATTTGTGCCTGAGTTTC+AGG + chr4.4:44001598-44001617 None:intergenic 40.0%
AAGCGAACTAAGAAGGCTTA+AGG - chr4.4:44002512-44002531 MS.gene049858:intron 40.0%
ATCTCCCATTCCTCAGTTAA+AGG + chr4.4:44000138-44000157 None:intergenic 40.0%
ATGTTCCAACTCCAAAGCAA+CGG + chr4.4:44001713-44001732 None:intergenic 40.0%
CCCCAGCAAAATATCTGAAT+TGG - chr4.4:44001102-44001121 MS.gene049858:CDS 40.0%
CCCCTTGTTAATCAATAGAG+CGG - chr4.4:43999800-43999819 MS.gene049858:CDS 40.0%
CTTCAGCATCTCGTTATCTT+CGG + chr4.4:44002304-44002323 None:intergenic 40.0%
GAGCAGATAAAATCGGAATC+AGG - chr4.4:44002021-44002040 MS.gene049858:intron 40.0%
GATTAACAAGGGGAGTCATA+AGG + chr4.4:43999793-43999812 None:intergenic 40.0%
GGAACCTACTTCAACCAAAA+AGG + chr4.4:44000113-44000132 None:intergenic 40.0%
GGTAACATGCTGAAGAAGTT+TGG - chr4.4:44002705-44002724 MS.gene049858:intron 40.0%
GTTAATCAATAGAGCGGAAG+GGG - chr4.4:43999806-43999825 MS.gene049858:CDS 40.0%
TAACTGAGGAATGGGAGATT+GGG - chr4.4:44000139-44000158 MS.gene049858:CDS 40.0%
TACAAAACTCGGGATTGTGA+TGG - chr4.4:44002407-44002426 MS.gene049858:intron 40.0%
TACTGAGAGATCTGTGTCTT+TGG - chr4.4:44002608-44002627 MS.gene049858:intron 40.0%
TAGCAAAGAACCTGAAACTC+AGG - chr4.4:44001585-44001604 MS.gene049858:intron 40.0%
TCAAACTCAGCAAGCTGAAT+CGG - chr4.4:44001480-44001499 MS.gene049858:intron 40.0%
TCTCCCATTCCTCAGTTAAA+GGG + chr4.4:44000137-44000156 None:intergenic 40.0%
TGCTTTGTCTTCTGCATTGA+AGG - chr4.4:44001405-44001424 MS.gene049858:intron 40.0%
TGTGGATATCTCTCTTAGTC+GGG + chr4.4:43999868-43999887 None:intergenic 40.0%
TTAACTGAGGAATGGGAGAT+TGG - chr4.4:44000138-44000157 MS.gene049858:CDS 40.0%
TTCCATGATACCTTGCAACT+CGG + chr4.4:44002133-44002152 None:intergenic 40.0%
! AAGCTTTCTTGGAGAGCTTT+TGG - chr4.4:44000759-44000778 MS.gene049858:CDS 40.0%
! CCGCTCTATTGATTAACAAG+GGG + chr4.4:43999803-43999822 None:intergenic 40.0%
! CTTGAATTGGTAGCTACTTG+TGG - chr4.4:44001451-44001470 MS.gene049858:intron 40.0%
! GAAGGCTAACTTAATGGACA+AGG - chr4.4:44002104-44002123 MS.gene049858:intron 40.0%
! GCTGAAAGCACAACTTGAAT+TGG - chr4.4:44001438-44001457 MS.gene049858:intron 40.0%
! TATCTAGAGCTATGTGCTAC+TGG - chr4.4:44001280-44001299 MS.gene049858:intron 40.0%
!! AAACTTGTTACCTCAGGAAC+TGG + chr4.4:44000654-44000673 None:intergenic 40.0%
!! AACTTGTTACCTCAGGAACT+GGG + chr4.4:44000653-44000672 None:intergenic 40.0%
!! ACTCTTCGAGTTTTGCAGAT+AGG + chr4.4:44001249-44001268 None:intergenic 40.0%
!! AGTTGGAACATTCTAGAGCA+AGG - chr4.4:44001722-44001741 MS.gene049858:intron 40.0%
!! CTCTTCGAGTTTTGCAGATA+GGG + chr4.4:44001248-44001267 None:intergenic 40.0%
!! GTTGGAACATTCTAGAGCAA+GGG - chr4.4:44001723-44001742 MS.gene049858:intron 40.0%
!! TGTTCTTTGAAGTCTGAGGT+TGG - chr4.4:44001904-44001923 MS.gene049858:intron 40.0%
AAAACTCGGGATTGTGATGG+AGG - chr4.4:44002410-44002429 MS.gene049858:intron 45.0%
AAGCAACCGTAAAGTGGCAA+GGG - chr4.4:44002443-44002462 MS.gene049858:intron 45.0%
ACAGTCTGATCAATGGAGGA+AGG - chr4.4:44002536-44002555 MS.gene049858:intron 45.0%
AGACAGAAGCAACCGTAAAG+TGG - chr4.4:44002437-44002456 MS.gene049858:intron 45.0%
AGAGGAAATAGAGAAAGCCG+AGG - chr4.4:44002365-44002384 MS.gene049858:intron 45.0%
AGGCACCTCTCAACTAAATG+TGG + chr4.4:43999886-43999905 None:intergenic 45.0%
AGGTACAGTCTGATCAATGG+AGG - chr4.4:44002532-44002551 MS.gene049858:intron 45.0%
ATGATTTCGGCAGGGAACAA+TGG - chr4.4:44002579-44002598 MS.gene049858:intron 45.0%
CAACAAGAGGTCATCGTATC+AGG + chr4.4:43999906-43999925 None:intergenic 45.0%
CCTCCCTTTAACTGAGGAAT+GGG - chr4.4:44000131-44000150 MS.gene049858:CDS 45.0%
GACTAGTAGTAGTCCTCAGT+TGG + chr4.4:44000536-44000555 None:intergenic 45.0%
GCAGTTAGAAGCAGCACAAA+TGG - chr4.4:44002473-44002492 MS.gene049858:intron 45.0%
GTCATCCCTTAGAATCTCGA+CGG + chr4.4:44001662-44001681 None:intergenic 45.0%
TAGGTTCCTCCCTTTAACTG+AGG - chr4.4:44000125-44000144 MS.gene049858:CDS 45.0%
TCCTCCCTTTAACTGAGGAA+TGG - chr4.4:44000130-44000149 MS.gene049858:CDS 45.0%
TGATTTCGGCAGGGAACAAT+GGG - chr4.4:44002580-44002599 MS.gene049858:intron 45.0%
! AACCGAGTTGCAAGGTATCA+TGG - chr4.4:44002128-44002147 MS.gene049858:intron 45.0%
! CACGCTCTTCTGTGATTTTC+TGG + chr4.4:44001327-44001346 None:intergenic 45.0%
! CAGAAGTGGTTCTTCTGAAG+TGG - chr4.4:44000479-44000498 MS.gene049858:CDS 45.0%
!! CTTTGAAGTCTGAGGTTGGA+CGG - chr4.4:44001908-44001927 MS.gene049858:intron 45.0%
!! TTGTGCTGCTTCTAACTGCT+CGG + chr4.4:44002472-44002491 None:intergenic 45.0%
AATGGGAGATTGGGACCCAA+GGG - chr4.4:44000148-44000167 MS.gene049858:CDS 50.0%
ACAAATGGCGAGCTCCGAAA+TGG - chr4.4:44002488-44002507 MS.gene049858:intron 50.0%
AGGCCAGAGACAATGTGAGT+TGG - chr4.4:44002041-44002060 MS.gene049858:intron 50.0%
AGTCAACCGAGAGATGCTGT+TGG + chr4.4:44001381-44001400 None:intergenic 50.0%
CAAGGGGAGTCATAAGGTTG+TGG + chr4.4:43999787-43999806 None:intergenic 50.0%
CCCATTCCTCAGTTAAAGGG+AGG + chr4.4:44000134-44000153 None:intergenic 50.0%
CCTCCAACTCACATTGTCTC+TGG + chr4.4:44002047-44002066 None:intergenic 50.0%
CTGCTGCTATGATTTCGGCA+GGG - chr4.4:44002571-44002590 MS.gene049858:intron 50.0%
GAAGCAACCGTAAAGTGGCA+AGG - chr4.4:44002442-44002461 MS.gene049858:intron 50.0%
GACAAGGAAACCGAGTTGCA+AGG - chr4.4:44002120-44002139 MS.gene049858:intron 50.0%
GCAAGACTTCGAGGAATCCA+AGG - chr4.4:44001210-44001229 MS.gene049858:CDS 50.0%
GCACGCGGAGAAACTTTCTT+AGG + chr4.4:44000507-44000526 None:intergenic 50.0%
GGCAGCTGCTGCTATGATTT+CGG - chr4.4:44002566-44002585 MS.gene049858:intron 50.0%
GTCAACCGAGAGATGCTGTT+GGG + chr4.4:44001380-44001399 None:intergenic 50.0%
TAGGGCTAAGAGTTGCTCCT+TGG + chr4.4:44001230-44001249 None:intergenic 50.0%
! CCAGAGACAATGTGAGTTGG+AGG - chr4.4:44002044-44002063 MS.gene049858:intron 50.0%
! GGATGACGGTAAAGTGAGAG+AGG - chr4.4:44002347-44002366 MS.gene049858:intron 50.0%
! TGACTTGCGATCAGCGAGTT+TGG + chr4.4:44000622-44000641 None:intergenic 50.0%
!! CAACTCCGTTGCTTTGGAGT+TGG - chr4.4:44001705-44001724 MS.gene049858:intron 50.0%
AACCGAGAGATGCTGTTGGG+AGG + chr4.4:44001377-44001396 None:intergenic 55.0%
ACCTCAGGAACTGGGCTTCT+GGG + chr4.4:44000645-44000664 None:intergenic 55.0%
AGCCTCCCAACAGCATCTCT+CGG - chr4.4:44001372-44001391 MS.gene049858:intron 55.0%
CGCGAGGCGGTTACAAAACT+CGG - chr4.4:44002396-44002415 MS.gene049858:intron 55.0%
GAATGGGAGATTGGGACCCA+AGG - chr4.4:44000147-44000166 MS.gene049858:CDS 55.0%
GACGTTGCGAGAGACGTAGA+TGG - chr4.4:44001679-44001698 MS.gene049858:intron 55.0%
GCAAGCTCAGCAAGACTTCG+AGG - chr4.4:44001201-44001220 MS.gene049858:CDS 55.0%
GCGAGGCGGTTACAAAACTC+GGG - chr4.4:44002397-44002416 MS.gene049858:intron 55.0%
GCTGCTGCTATGATTTCGGC+AGG - chr4.4:44002570-44002589 MS.gene049858:intron 55.0%
TACCTCAGGAACTGGGCTTC+TGG + chr4.4:44000646-44000665 None:intergenic 55.0%
TCAATGGAGGAAGGCTGCAG+AGG - chr4.4:44002545-44002564 MS.gene049858:intron 55.0%
TGGCTGCAACTCCGTTGCTT+TGG - chr4.4:44001699-44001718 MS.gene049858:intron 55.0%
!! CGGTCACCCTTGCCACTTTA+CGG + chr4.4:44002452-44002471 None:intergenic 55.0%
ACCCAGAAGCCCAGTTCCTG+AGG - chr4.4:44000641-44000660 MS.gene049858:CDS 60.0%
CTCAGTTGGCGTACAGCACG+CGG + chr4.4:44000522-44000541 None:intergenic 60.0%
AGCCGAGGCTGCAAAACGCG+AGG - chr4.4:44002380-44002399 MS.gene049858:intron 65.0%
CGAGGCTGCAAAACGCGAGG+CGG - chr4.4:44002383-44002402 MS.gene049858:intron 65.0%
CGCGTGCTGTACGCCAACTG+AGG - chr4.4:44000520-44000539 MS.gene049858:CDS 65.0%
! CGCCTCGCGTTTTGCAGCCT+CGG + chr4.4:44002385-44002404 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 43999633 44002755 43999633 ID=MS.gene049858
chr4.4 mRNA 43999633 44002755 43999633 ID=MS.gene049858.t1;Parent=MS.gene049858
chr4.4 exon 44002736 44002755 44002736 ID=MS.gene049858.t1.exon1;Parent=MS.gene049858.t1
chr4.4 CDS 44002736 44002755 44002736 ID=cds.MS.gene049858.t1;Parent=MS.gene049858.t1
chr4.4 exon 44001726 44001906 44001726 ID=MS.gene049858.t1.exon2;Parent=MS.gene049858.t1
chr4.4 CDS 44001726 44001906 44001726 ID=cds.MS.gene049858.t1;Parent=MS.gene049858.t1
chr4.4 exon 43999633 44001294 43999633 ID=MS.gene049858.t1.exon3;Parent=MS.gene049858.t1
chr4.4 CDS 43999633 44001294 43999633 ID=cds.MS.gene049858.t1;Parent=MS.gene049858.t1
Gene Sequence

>MS.gene049858

ATGCATACCCCTAAGACAAGGTAATCTTCAAATACTACTTTGACTATTACTCTTTTTCCTATATAAATGTTGTTTTCGTACTTTACTATTGCTATATTTTAGAAAGCAAAAGCAAAATCAACTTAGCTGAATTTTGTTCCTTTTTTTAAATCCACAACCTTATGACTCCCCTTGTTAATCAATAGAGCGGAAGGGGTTAGACGCTCACAACGTGACGAACAAATTTTTGAATCCCGACTAAGAGAGATATCCACATTTAGTTGAGAGGTGCCTGATACGATGACCTCTTGTTGAAGAAACCTATGAAAAAAAAATCCAAAATTCATTTTATCACAATGCATCAAGGACCATAAAGAACTAATCAATGACATTAAGCAATTTGCAATTAGTGAATAGAATAGAGTAAGTGTTAAGTTTTTACCCTTTTATCACCTTGCCTAAATGCATAATCATGTCTCATTAGTCATTATTGTATTTCCTTTTTGGTTGAAGTAGGTTCCTCCCTTTAACTGAGGAATGGGAGATTGGGACCCAAGGGAGTTGTTACCTCTTTTTTAAGGCACCTTTTGTTTTATTCGGTCAACAAAAACATACTAGTACTTTTTTTTTATTGGATTGCCACATTATAACTTTTTTGTATTTAGAATACCATCTAACATTTACAACAGAATGGTTAGAGTATCATGTAACATAAGAATTTGAGTTACCATTTATGTGTGAAAGGAACTGAGGATTTATTGTTTAATAATGACAACAAGGTATAAGTTGATTGGAATGATAGATATATGAGTTTCCATTTACAACATAGATTTTGTATTTGTTAACATTTTTATTTTATTGAAATTTCAGAAGTGGTTCTTCTGAAGTGGTGCCTAAGAAAGTTTCTCCGCGTGCTGTACGCCAACTGAGGACTACTACTAGTCTAGACACTGACTCTGTATCTTCTTCTTCGACTCAAACTAGTAAAATATCAAAGGAAAGAAGCTCCAAACTCGCTGATCGCAAGTCACCCAGAAGCCCAGTTCCTGAGGTAACAAGTTTTTACCATTAACTTGATAAGCAATTTCTATAATGAAAGAGAAATTAAAGACAAACTGTTTTCATATAAGTTATAAGTTGTTTTCATAAGCTTTCTTGGAGAGCTTTTGGAAATAAGATGAAAACCGCTTGTATAAACAACTTACATTAAAACATTTTGACTTATATGAAAACCGCTTATTTTATCAGTTATTATAGAAATAACTTTTCTCTTTTTGAAGGATATAGAAATAACTTGATAAGCCCTAAACTAAGTTGATTATCCAAACAAGGCAATGCATAACTTTTATTCAATGCATTTTTAGTTGAGAAAATTTTAACTATTATAATTGATGGATATAGCACATTGCTAGCATTGTTTTCAGTACATTTTTCCTTTTTTAGTTGAGAAGATTTTAACTATTATGATTGATGTTGCATTAGAGGAAACGCCCCAGCAAAATATCTGAATTGGAATCGCAAATTTCTCAACTTCAAGATGATTTGAAGAAGGTGAAGGACCAGCTTATTTCGTCTGAATCATGCAAGAAGCAAGCTCAGCAAGACTTCGAGGAATCCAAGGAGCAACTCTTAGCCCTATCTGCAAAACTCGAAGAGTCTCAAAAGCAATATCTAGAGCTATGTGCTACTGGAGAAGCTCGCGATATCGAACTCCAGAAAATCACAGAAGAGCGTGATAGCGCATTGAAATCTGAGCTCGAAGCCTCCCAACAGCATCTCTCGGTTGACTCTACTGCTTTGTCTTCTGCATTGAAGGAAATTCAGCTGCTGAAAGCACAACTTGAATTGGTAGCTACTTGTGGTAGTGCTCAAACTCAGCAAGCTGAATCGGCAGATAAAGAGCTACTGAACCTAAATCAAAACTTATCAGAATCACTTTCTCAGATGGAGAACATGAAAAACCAACTCAAGAATAGCAAAGAACCTGAAACTCAGGCACAAATCTTTATTGATGAAACTTTGTTGCAACTCAAGTCTGCGAAAAGAACCGTCGAGATTCTAAGGGATGACGTTGCGAGAGACGTAGATGGCTGCAACTCCGTTGCTTTGGAGTTGGAACATTCTAGAGCAAGGGTGAACACGCTAGCAACACTTGTTAGCAAATTTAAGACACGCATCAATGATAATGAATCGATTCATTCTGATCAAAATATTGTGGATGATTGTAAATTTGAGAAGGAAAGTGAAATATTGAGAATTGGAGAGGATCCTAATCATATTGAAGAAGAGATTTGTTCTTTGAAGTCTGAGGTTGGACGGCTGAGATCTGCTGTAGAGACTGCCGAGACTAAACATCAAGAACAACAGATTCAAAGCACGGTGCAAATCAGCAATGCGTATGAGTTAATCGAGCAGATAAAATCGGAATCAGGCCAGAGACAATGTGAGTTGGAGGCTGAATTACAAAGAAAGAAAACTGACATTGAAGAGTTGAAGGCTAACTTAATGGACAAGGAAACCGAGTTGCAAGGTATCATGGAAGAGAATGAGAATTTAAATTCGAAGCTCGAAAAGAATATGTCATCACAAAATGAACATGGACTTCAAAAGGAACTCAAAAGATTGGAAGAATGTGTTGCTGAATTGAAAGCTGATATGATGGACAAAGAAACAACATTGCAAAGCATATCCGAAGATAACGAGATGCTGAAGATGAAAATCAACAAGAGTTGCTTGGATGACGGTAAAGTGAGAGAGGAAATAGAGAAAGCCGAGGCTGCAAAACGCGAGGCGGTTACAAAACTCGGGATTGTGATGGAGGAAGCAGACAGAAGCAACCGTAAAGTGGCAAGGGTGACCGAGCAGTTAGAAGCAGCACAAATGGCGAGCTCCGAAATGGAAAGCGAACTAAGAAGGCTTAAGGTACAGTCTGATCAATGGAGGAAGGCTGCAGAGGCAGCTGCTGCTATGATTTCGGCAGGGAACAATGGGAAGCTTACTGAGAGATCTGTGTCTTTGGACAATAATAATACCTATAAGTATTCACCTAATTATGCTGAAGATGTTGATGATGATTTCCAGAGAAAGAAAAATGGTAACATGCTGAAGAAGTTTGGAGTCTTATGGAAGAAGCCTCAAAAATAG

Protein sequence

>MS.gene049858.t1

MHTPKTRSGSSEVVPKKVSPRAVRQLRTTTSLDTDSVSSSSTQTSKISKERSSKLADRKSPRSPVPERKRPSKISELESQISQLQDDLKKVKDQLISSESCKKQAQQDFEESKEQLLALSAKLEESQKQYLELCATGEARDIELQKITEERDSALKSELEASQQHLSVDSTALSSALKEIQLLKAQLELVATCGSAQTQQAESADKELLNLNQNLSESLSQMENMKNQLKNSKEPETQAQIFIDETLLQLKSAKRTVEILRDDVARDVDGCNSVALELEHSRARVNTLATLVSKFKTRINDNESIHSDQNIVDDCKFEKESEILRIGEDPNHIEEEICSLKSEVGRLRSAVETAETKHQEQQIQSTVQISNAYELIEQIKSESGQRQCELEAELQRKKTDIEELKANLMDKETELQGIMEENENLNSKLEKNMSSQNEHGLQKELKRLEECVAELKADMMDKETTLQSISEDNEMLKMKINKSCLDDGKVREEIEKAEAAKREAVTKLGIVMEEADRSNRKVARVTEQLEAAQMASSEMESELRRLKVQSDQWRKAAEAAAAMISAGNNGKLTERSVSLDNNNTYKYSPNYAEDVDDDFQRKKNGNMLKKFGVLWKKPQK