AlfalfaGEDB | MS.gene23802

M. sativa cultivar XinJiangDaYe / MS.gene23802

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23802.t1	RHN41853.1	95	383	18	1	2	384	27	408	2.30E-203	718

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23802.t1	Q9SII6	65.7	338	114	1	43	380	62	397	5.6e-129	462.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23802.t1	A0A396GMV8	95.0	383	18	1	2	384	27	408	1.7e-203	718.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051122	MS.gene23802	0.824811	6.59E-54	-1.69E-46
MS.gene060850	MS.gene23802	0.807399	5.15E-50	-1.69E-46
MS.gene060851	MS.gene23802	0.82634	2.86E-54	-1.69E-46
MS.gene060852	MS.gene23802	0.825643	4.19E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene23802	MS.gene96575	PPI
MS.gene65103	MS.gene23802	PPI
MS.gene66065	MS.gene23802	PPI
MS.gene77229	MS.gene23802	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23802.t1	MTR_8g073560	97.382	382	9	1	3	384	14	394	0.0	765
MS.gene23802.t1	MTR_5g023980	74.551	334	83	1	44	375	53	386	0.0	523
MS.gene23802.t1	MTR_8g073560	96.124	258	8	2	2	258	27	283	0.0	505
MS.gene23802.t1	MTR_8g073700	93.846	260	14	2	120	378	19	277	0.0	503
MS.gene23802.t1	MTR_3g115490	63.372	344	121	2	28	369	42	382	4.94e-154	440
MS.gene23802.t1	MTR_2g096950	59.259	324	132	0	39	362	45	368	7.22e-152	435
MS.gene23802.t1	MTR_5g079840	56.125	351	149	2	13	360	19	367	1.88e-150	431
MS.gene23802.t1	MTR_5g099130	64.263	319	109	1	42	360	68	381	2.57e-150	430
MS.gene23802.t1	MTR_5g038870	60.843	332	128	1	38	369	46	375	2.57e-150	431
MS.gene23802.t1	MTR_5g099130	64.263	319	109	1	42	360	79	392	9.79e-150	429

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23802.t1	AT2G17220	67.751	338	107	1	43	380	61	396	4.27e-171	484
MS.gene23802.t1	AT2G17220	67.751	338	107	1	43	380	62	397	4.93e-171	484
MS.gene23802.t1	AT4G35600	63.158	361	118	2	4	364	34	379	5.52e-170	481
MS.gene23802.t1	AT4G35600	63.158	361	118	2	4	364	35	380	7.42e-170	481
MS.gene23802.t1	AT2G28930	62.025	316	120	0	41	356	42	357	6.91e-152	435
MS.gene23802.t1	AT2G28930	62.025	316	120	0	41	356	45	360	1.03e-151	435
MS.gene23802.t1	AT2G28930	62.025	316	120	0	41	356	53	368	1.72e-151	434
MS.gene23802.t1	AT1G07570	58.261	345	143	1	14	357	13	357	6.18e-151	432
MS.gene23802.t1	AT1G07570	58.261	345	143	1	14	357	13	357	6.18e-151	432
MS.gene23802.t1	AT1G07570	58.261	345	143	1	14	357	13	357	6.18e-151	432

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Find 85 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTATAAAGGTTGGT+TGG	0.474192	8.4:-30816999	MS.gene23802:CDS
AAATTGAAAGGCATAATGGA+TGG	0.621156	8.4:-30813716	MS.gene23802:CDS
AAGAGTGATGTTTATGGCTT+TGG	0.360416	8.4:-30813848	MS.gene23802:CDS
AAGGCTCTCTCACCCAAACT+TGG	0.506037	8.4:-30815418	MS.gene23802:CDS
ACAACAAAACCTAGTTGAAT+GGG	0.498972	8.4:-30813765	MS.gene23802:CDS
ACAATCACATGTAACTACCA+GGG	0.708704	8.4:-30814489	MS.gene23802:CDS
ACACTTTGTCCTTGTAAAGC+TGG	0.444484	8.4:-30816968	MS.gene23802:CDS
ACATGTAACTACCAGGGTCA+TGG	0.511179	8.4:-30814483	MS.gene23802:CDS
ACCAGGGTCATGGGGACTTA+TGG	0.345960	8.4:-30814473	MS.gene23802:CDS
ACCATAAGTCCCCATGACCC+TGG	0.610715	8.4:+30814472	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAGAATTCATCAGCTG+AGG	+	chr8.4:30815472-30815491	None:intergenic	30.0%
AATAAACTTCACTGACACTT+TGG	+	chr8.4:30817022-30817041	None:intergenic	30.0%
AATAAGAATTCATCAGCTGA+GGG	+	chr8.4:30815471-30815490	None:intergenic	30.0%
ACAACAAAACCTAGTTGAAT+GGG	-	chr8.4:30817201-30817220	MS.gene23802:CDS	30.0%
ACCTTTCACTTTCATAATCT+TGG	-	chr8.4:30814877-30814896	MS.gene23802:intron	30.0%
ACTCAAGGATAATTAATGGA+TGG	+	chr8.4:30814759-30814778	None:intergenic	30.0%
ATAAACTTCACTGACACTTT+GGG	+	chr8.4:30817021-30817040	None:intergenic	30.0%
ATCAACTAAATTGACGCATA+TGG	+	chr8.4:30814365-30814384	None:intergenic	30.0%
CATTAATTATCCTTGAGTCA+AGG	-	chr8.4:30814761-30814780	MS.gene23802:intron	30.0%
CTTCAAATATACTCCTTGAT+GGG	-	chr8.4:30815879-30815898	MS.gene23802:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	30813493	30817495	30813493	ID=MS.gene23802
chr8.4	mRNA	30813493	30817495	30813493	ID=MS.gene23802.t1;Parent=MS.gene23802
chr8.4	exon	30817492	30817495	30817492	ID=MS.gene23802.t1.exon1;Parent=MS.gene23802.t1
chr8.4	CDS	30817492	30817495	30817492	ID=cds.MS.gene23802.t1;Parent=MS.gene23802.t1
chr8.4	exon	30816901	30817256	30816901	ID=MS.gene23802.t1.exon2;Parent=MS.gene23802.t1
chr8.4	CDS	30816901	30817256	30816901	ID=cds.MS.gene23802.t1;Parent=MS.gene23802.t1
chr8.4	exon	30815325	30815460	30815325	ID=MS.gene23802.t1.exon3;Parent=MS.gene23802.t1
chr8.4	CDS	30815325	30815460	30815325	ID=cds.MS.gene23802.t1;Parent=MS.gene23802.t1
chr8.4	exon	30815087	30815229	30815087	ID=MS.gene23802.t1.exon4;Parent=MS.gene23802.t1
chr8.4	CDS	30815087	30815229	30815087	ID=cds.MS.gene23802.t1;Parent=MS.gene23802.t1
chr8.4	exon	30814444	30814567	30814444	ID=MS.gene23802.t1.exon5;Parent=MS.gene23802.t1
chr8.4	CDS	30814444	30814567	30814444	ID=cds.MS.gene23802.t1;Parent=MS.gene23802.t1
chr8.4	exon	30813493	30813884	30813493	ID=MS.gene23802.t1.exon6;Parent=MS.gene23802.t1
chr8.4	CDS	30813493	30813884	30813493	ID=cds.MS.gene23802.t1;Parent=MS.gene23802.t1

Gene Sequence

>MS.gene23802

ATGGGTCTCTGTTTTTCCTTTCTCTGCCCCTCCTCTGCACCCCCTCAATCTTCTTCCTTCAACAGACCTCTTTCTTCAGGCAAGTCTTCAACTTTTCCATTTTCTCAATCACCCATCTTCACAAATTTTCAATTCCAGTTCAAATCACCACATGGGCCATTCCATTTTCTCAAAAATTTCCATCAAAAGTTTTTCATAATAACACTTTCCTCTGTTTACTCTGTTTTCTCTGTTTTCAGGTTCAACAAGCACTGTTGGATTCTCAGCAACTACAAGCAGTGCTGGAAGAAGCCAATTCTCTGAGGTAGCAAGTGGAAGCATTGATGATACTACTGAAGGAGGGTCTCTTCCTTTACCTTCACCAAATGGTCAAATTCTTGAAAGACCAAATTTGAAGGTTTTTGCTTTTATTGAATTGAAAGCTGCTACAAAAAGCTTCAAATCTGATACATTACTTGGTGAAGGTGGTTTTGGAAAAGTTTATAAAGGTTGGTTGGATGAGAAAACACTTTGTCCTTGTAAAGCTGGTTCTGGAATGGTTGTTGCTATCAAAAAATTGAATTCTGAAAGTACTCAAGGTTTTCAAGAATGGCAGGTGAGTTTAATTTAAACTATTGGTTGAATCACTAATTTAATGTATACAGTTTTAGGTTTTGAATCTATCATTTTTTTTTTTTGACAAACAATCTATCAATTTATAGTTTGTGAAATGATTGATATTTTATAGTAGTATTTGAAATTAGAAACATTTGATCATTTTAGTTCTTTTGAAAAATAAAAATTTAAATTTAGATTAAGTGAAGAATCACTAATTACGAGAAATTCTAAACTAAAATCTAAATTACGGTGGATGTGAGCAGAATGTCTAACCATATGCGTCAATTTAGTTGATAATAAATTTATTCTTTGAAATTAACCCCAATCTACAATTTTATGGACTAAATTTATCTTACTTATTTTGTTCATTTATTTGTGGTTGAAAATGTGGAAGTGTGTTTGGTTTAAAAAAACATGATGTTGAAGAGTATGTTTTCATTTCTAGTTGAATTTAGTATTGGTTATTAATGATTACTAGCTTGTCATTAATTAATATGGCTATATGAACATGATGTTGCCATCTAGAGTATTTTTTACTATATTCAATATGAGGAATGTACATTTAATTCAAACTCAAGAGTTTGGAAGATGGTCATGGAATTGGAATTGGAATTGGAATGCAGCAGGAAATTGAATATGGGCCCCACTAAATGATCTGTCCTTCTTCCATCCATTAATTATCCTTGAGTCAAGGACTATTAAAATATTGAAAAATAGTACATTGTTGCCTTAGTTTCCAAACTATTGAATTGTTGACTCAAAGATAGATTATTTAAAACGGGCGTTTACCTTTCACTTTCATAATCTTGGCTGTTGTGTGACTTGTGATATCTCTCCTTAACTTTATCTTTGAATAAGTGAAAACAAGTATTATTTTCTTTGTGTCTTTGTTTGAATGAGTATAATGTACATTTATTGTACATTGCATTCCCATTAGGCAAAGTGGACTATATTTGAAGTTATAATTAATGTACACGTGGGAGCCATAACAATGTTTGCTTGTGGAAAGTAGCAAATAACAATGTTTGCTTTGAGCACATGTGAGCCATAAATGATATAAACTATAATGTAAAATGCAAAATTCATATGAACTTGTATATCAATAACATCATGATGTATTGATTTTTCTTCTTCTTCATATTGCATTCATACCTATAGTGTAGCCACTTAGCCATCAACAAAATATGTGCATGTACTTTTATATGTCAATCTTACAAATGTTTTCCAAAAATGGTACTAGTAAACTAAACAAATTAATTTTGACCGTGTAAAAAGTTTTATATCGTTTATGAATCACAACCGACCATATGTGTGACTTTCGAAGTAATTATGATTGAAGTTAAACATTAGTAACGATTTGACAATTATGCAACAAATGCCCTCAGCTGATGAATTCTTATTTAGTAACATATGTTTTTGTGTTGATTGAACAATGCAGTCAGAAGTTAACTTCTTAGGAAGGCTCTCTCACCCAAACTTGGTGAAGCTATTAGGTTATTGTTGGGACGACGACGAGCTTCTTCTTGTCTACGAGTTCATGCCAAAAGGAAGTTTGGAGAATCATCTTTTCAGAAGTATGTAGTGTTGTACTAAAGACAGTTAATTAAAATGAGAATTTTTCTGGTCTTTGTTTTGAGTATAATTTGGTTTATCTGTTGTGTTCTTTCAGGAAATCCTAACATTGAACCACTTTCTTGGAACACAAGAATAAAAATAGCTATTGGTGCAGCTCGTGGTTTGGCTTTCTTGCATGATTCAGCACAGCAAGTCATATACAGAGATTTTAAGGCTTCAAATATACTCCTTGATGGGGTCAGTTATTTTTGTCCATACAACTTATTTTCATAAGTTTTGTACAGTTTACCTCCCGGCCGAACTTTGGATTACCGGAGACCCTTTCTCCTAGTAACCGTTGACACCAAATATAAGTTATGAGGAATAGTACAAAACTAGCTTATAGTTTATATGAAAATAGTTTGACTTCATTTTAGCTTGTCATAATAATAATTTGTACATAGAAACTTATGTGATAAGTGATTATGCTATAAATACCTAAATAAAATGTTTATCCAAACAAAACTATTTGATGTTTTTTTAAACAACCAATGTTCGTATGTTAATTGTTGATTTTTCAATATTTGTTAAAGGTGAGAATCGAATCCGAGACCACCCTTTATCACTCCACTCCTTAACTCTCCAACTTCAGCCATCAAACCAACCTTACCCTAGAACTATCTGATGTTATGAATGCATATCTTTTAAGTAACAAATTGATGTTTTTTAATGCGAAATTCCACAGATCATTTTGATAACACATCTTGTATCTTGCAGAGTTACAATGCAAAAATCTCAGATTTCGGATTAGCTAAATTGGGGCCTTCTGGGGGACAATCACATGTAACTACCAGGGTCATGGGGACTTATGGTTATGCTGCTCCAGAATACATTGCAACAGGTAATCATATATATCCACTAAAATTGGCAATTGAAACATCATTCAGTTTATGTTTTGGCTTATTAGTGAGTGATACTGCTTAATGTGAGCCAAGACTGAATTGATGATAAACTAAGCAAGAAGGAAATGGAAGTAGTATAATAAAGTGAAAAGTTTTCTATTTTCACTGATCATTATACAAATGTCACTTTGTTTTCTTTTCTCAATGATTTCTGGAGATTGGAAATTGTTGAGATCTCACATTAGCGATATGACTTAATTAGTTTTTATAGTGCTTGGACAATCCTCACTTATTTTTAGACCTAAATTCTAAGACGATACGAACTATGAAGTACTAACACAAACACGACACTGATAGTATGTCCCATACACAACGATAATAATTTAACAAAATGAAAGTGGCTGAAGGTAATCACGTGTTAGTGTCAGAAATCGACACATGTTGGACATCAGACACACTTTCAAGACTTCTACCCAAAGTGTCAGTGAAGTTTATTATAAATCTATTATTGAGCAACAAAAACTAACATGTTGTATGAATTGAATGACAATTCAACAGGACACTTGTATGTGAAGAGTGATGTTTATGGCTTTGGTGTGGTGCTGTTAGAAATCCTAACAGCCATGAGGGCATTGGACACAAAGAGGCCAACAGGACAACAAAACCTAGTTGAATGGGTGAAACCATTTCTGTCCAATAAGAAAAAATTGAAAGGCATAATGGATGGTAGAATAGAAGGACAATACTCACCAAAGGCAGCAGTAAAAGCAGCAGCACTTTCTCTAAAGTGCTTAGAAAATGACCCTAAACAACGTCCTTCTATGAAAGAAGTACTTGAGTCATTGGAAGCTATTGAAGCAATTCAGGTCAAAACTAAAAGATCCAACAACAATTCTCATCAACCTCCAGTTCTTCAAGCTGCTAGGCACCAGAGAGTTGTGAAAGTATAA

Protein sequence

>MS.gene23802.t1

MGSTSTVGFSATTSSAGRSQFSEVASGSIDDTTEGGSLPLPSPNGQILERPNLKVFAFIELKAATKSFKSDTLLGEGGFGKVYKGWLDEKTLCPCKAGSGMVVAIKKLNSESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDDELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHDSAQQVIYRDFKASNILLDGSYNAKISDFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTAMRALDTKRPTGQQNLVEWVKPFLSNKKKLKGIMDGRIEGQYSPKAAVKAAALSLKCLENDPKQRPSMKEVLESLEAIEAIQVKTKRSNNNSHQPPVLQAARHQRVVKV