Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23920.t1 | XP_003603652.2 | 92.9 | 352 | 20 | 1 | 1 | 352 | 1 | 347 | 3.40E-185 | 657.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23920.t1 | Q08448 | 26.8 | 239 | 131 | 8 | 66 | 295 | 6 | 209 | 3.8e-15 | 84.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23920.t1 | G7J403 | 92.9 | 352 | 20 | 1 | 1 | 352 | 1 | 347 | 2.5e-185 | 657.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055942 | MS.gene23920 | 0.815632 | 8.37E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23920 | MS.gene66879 | PPI |
| MS.gene23920 | MS.gene042331 | PPI |
| MS.gene23920 | MS.gene038914 | PPI |
| MS.gene012424 | MS.gene23920 | PPI |
| MS.gene23920 | MS.gene046359 | PPI |
| MS.gene23920 | MS.gene57902 | PPI |
| MS.gene23920 | MS.gene035683 | PPI |
| MS.gene23920 | MS.gene018355 | PPI |
| MS.gene66880 | MS.gene23920 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23920.t1 | MTR_3g110530 | 95.170 | 352 | 12 | 1 | 1 | 352 | 1 | 347 | 0.0 | 692 |
| MS.gene23920.t1 | MTR_4g128800 | 55.932 | 295 | 117 | 5 | 64 | 352 | 29 | 316 | 2.07e-111 | 329 |
| MS.gene23920.t1 | MTR_4g128800 | 55.932 | 295 | 117 | 5 | 64 | 352 | 29 | 316 | 7.42e-111 | 329 |
| MS.gene23920.t1 | MTR_4g128800 | 60.400 | 250 | 91 | 4 | 64 | 307 | 29 | 276 | 1.44e-105 | 311 |
| MS.gene23920.t1 | MTR_1g040460 | 54.826 | 259 | 106 | 4 | 66 | 323 | 31 | 279 | 2.84e-90 | 275 |
| MS.gene23920.t1 | MTR_8g086260 | 48.659 | 261 | 132 | 2 | 61 | 320 | 85 | 344 | 7.77e-83 | 257 |
| MS.gene23920.t1 | MTR_8g086260 | 48.659 | 261 | 132 | 2 | 61 | 320 | 85 | 344 | 6.51e-82 | 256 |
| MS.gene23920.t1 | MTR_8g086260 | 48.659 | 261 | 132 | 2 | 61 | 320 | 85 | 344 | 8.66e-82 | 256 |
| MS.gene23920.t1 | MTR_8g086260 | 50.000 | 244 | 120 | 2 | 61 | 303 | 85 | 327 | 6.99e-80 | 248 |
| MS.gene23920.t1 | MTR_2g015960 | 43.667 | 300 | 158 | 5 | 61 | 353 | 79 | 374 | 8.97e-76 | 240 |
| MS.gene23920.t1 | MTR_2g015960 | 48.193 | 249 | 124 | 3 | 61 | 307 | 18 | 263 | 1.02e-74 | 232 |
| MS.gene23920.t1 | MTR_2g015960 | 48.193 | 249 | 124 | 3 | 61 | 307 | 79 | 324 | 1.24e-73 | 231 |
| MS.gene23920.t1 | MTR_8g086260 | 48.035 | 229 | 117 | 2 | 61 | 288 | 85 | 312 | 1.36e-71 | 226 |
| MS.gene23920.t1 | MTR_8g086260 | 48.035 | 229 | 117 | 2 | 61 | 288 | 85 | 312 | 3.06e-71 | 225 |
| MS.gene23920.t1 | MTR_6g005650 | 94.118 | 85 | 5 | 0 | 133 | 217 | 210 | 294 | 8.66e-50 | 169 |
| MS.gene23920.t1 | MTR_7g405800 | 91.765 | 85 | 7 | 0 | 133 | 217 | 143 | 227 | 5.92e-49 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23920.t1 | AT1G10040 | 61.149 | 296 | 108 | 4 | 36 | 331 | 53 | 341 | 2.76e-125 | 366 |
| MS.gene23920.t1 | AT1G10040 | 61.149 | 296 | 108 | 4 | 36 | 331 | 53 | 341 | 4.04e-125 | 365 |
| MS.gene23920.t1 | AT4G25770 | 55.109 | 274 | 109 | 4 | 48 | 320 | 78 | 338 | 7.70e-101 | 304 |
| MS.gene23920.t1 | AT4G25770 | 55.109 | 274 | 109 | 4 | 48 | 320 | 78 | 338 | 8.24e-101 | 304 |
| MS.gene23920.t1 | AT5G51180 | 52.708 | 277 | 118 | 5 | 62 | 337 | 31 | 295 | 1.66e-91 | 278 |
| MS.gene23920.t1 | AT5G51180 | 52.708 | 277 | 118 | 5 | 62 | 337 | 31 | 295 | 1.66e-91 | 278 |
| MS.gene23920.t1 | AT1G29120 | 47.407 | 270 | 132 | 4 | 58 | 326 | 94 | 354 | 6.17e-80 | 249 |
| MS.gene23920.t1 | AT1G29120 | 47.407 | 270 | 132 | 4 | 58 | 326 | 94 | 354 | 7.09e-80 | 249 |
| MS.gene23920.t1 | AT1G29120 | 47.407 | 270 | 132 | 4 | 58 | 326 | 94 | 354 | 4.22e-79 | 249 |
| MS.gene23920.t1 | AT1G29120 | 47.407 | 270 | 132 | 4 | 58 | 326 | 94 | 354 | 4.22e-79 | 249 |
| MS.gene23920.t1 | AT1G29120 | 47.407 | 270 | 132 | 4 | 58 | 326 | 95 | 355 | 4.53e-79 | 249 |
| MS.gene23920.t1 | AT1G29120 | 47.407 | 270 | 132 | 4 | 58 | 326 | 94 | 354 | 5.00e-79 | 248 |
| MS.gene23920.t1 | AT1G29120 | 47.232 | 271 | 132 | 5 | 58 | 326 | 94 | 355 | 2.09e-77 | 245 |
| MS.gene23920.t1 | AT1G29120 | 46.983 | 232 | 114 | 3 | 58 | 288 | 94 | 317 | 6.70e-69 | 219 |
Find 75 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTGATCATTATGGTTAA+TGG | 0.242137 | 3.1:+88479703 | MS.gene23920:CDS |
| CCCTACTCACTTGATCATTA+TGG | 0.263643 | 3.1:+88479696 | MS.gene23920:CDS |
| TGTATTGCAGTGCTCATAAT+TGG | 0.264626 | 3.1:+88479840 | MS.gene23920:intron |
| TTCTCTTCAGGTCTGCTTTA+CGG | 0.279950 | 3.1:+88481825 | MS.gene23920:intron |
| TCATTTATAGCTCATTCTTT+AGG | 0.292897 | 3.1:+88481092 | MS.gene23920:CDS |
| ACAATGTACAATAACATCAT+AGG | 0.313578 | 3.1:-88479897 | None:intergenic |
| ATTGAAGTTGTTGATGCTTC+TGG | 0.317200 | 3.1:+88479661 | MS.gene23920:CDS |
| GTTATGTGGATTTCACTCTT+TGG | 0.332758 | 3.1:+88481584 | MS.gene23920:CDS |
| GCAGACGTAATAAAATTAAT+AGG | 0.342709 | 3.1:-88481263 | None:intergenic |
| TCTCGTCTTTCACGGTTTCT+TGG | 0.354731 | 3.1:+88481618 | MS.gene23920:CDS |
| TATTTCTAAGGAACTATCTC+AGG | 0.376332 | 3.1:+88481160 | MS.gene23920:CDS |
| TCACGGTTTCTTGGTAAAAC+AGG | 0.379925 | 3.1:+88481627 | MS.gene23920:CDS |
| AAGTTGAAATTCCCTAAGTT+TGG | 0.380139 | 3.1:+88479595 | MS.gene23920:CDS |
| TTACATGAATTTAATATCTT+CGG | 0.384225 | 3.1:-88481718 | None:intergenic |
| TTATGAGAGAGATATTTCTA+AGG | 0.386599 | 3.1:+88481148 | MS.gene23920:CDS |
| TCTTCAACATTGACATTTGA+CGG | 0.387095 | 3.1:+88480803 | MS.gene23920:CDS |
| GATTCACTTGGAACTTCCTC+TGG | 0.397952 | 3.1:-88482193 | None:intergenic |
| ATTCTGAAACAACCAAACTT+AGG | 0.414031 | 3.1:-88479607 | None:intergenic |
| TCTAACATGACATTCTTGAT+TGG | 0.415522 | 3.1:-88481210 | None:intergenic |
| GAATCCAACATGATGCTAAA+GGG | 0.419749 | 3.1:+88479626 | MS.gene23920:CDS |
| CTTTAGGTACCTTTGTTATG+TGG | 0.429412 | 3.1:+88481570 | MS.gene23920:intron |
| CTGCAAAGCAATTTCTCAAA+AGG | 0.432708 | 3.1:+88479870 | MS.gene23920:CDS |
| ATTATGGTTAATGGTCTCAT+TGG | 0.432977 | 3.1:+88479712 | MS.gene23920:CDS |
| AAACAGCATCTCGTCTTTCA+CGG | 0.439813 | 3.1:+88481610 | MS.gene23920:CDS |
| AGAATCCAACATGATGCTAA+AGG | 0.445116 | 3.1:+88479625 | MS.gene23920:CDS |
| TGGTTAATGGTCTCATTGGC+AGG | 0.445481 | 3.1:+88479716 | MS.gene23920:CDS |
| GATGGAGCACATCATCTATA+AGG | 0.445579 | 3.1:+88481997 | MS.gene23920:CDS |
| CTTCGGAGTCACGAACCATC+TGG | 0.449587 | 3.1:-88481701 | None:intergenic |
| ATAGGCAACGCGACGTTTGA+AGG | 0.458227 | 3.1:-88481849 | None:intergenic |
| TTTGACGGTGTTGATGTAAC+GGG | 0.476103 | 3.1:+88480818 | MS.gene23920:CDS |
| CAATGTACAATAACATCATA+GGG | 0.477170 | 3.1:-88479896 | None:intergenic |
| TTCTGAAACAACCAAACTTA+GGG | 0.479544 | 3.1:-88479606 | None:intergenic |
| TCCAATGTTAGTAGTGGATC+CGG | 0.480213 | 3.1:+88482214 | MS.gene23920:CDS |
| TTCCTCTGGAAGAACGGAAG+TGG | 0.484010 | 3.1:-88482179 | None:intergenic |
| CTACTAACATTGGATTCACT+TGG | 0.486876 | 3.1:-88482205 | None:intergenic |
| TAAAACGCCACCCAAGTGTT+CGG | 0.489692 | 3.1:+88481063 | MS.gene23920:CDS |
| TTTATAGCTCATTCTTTAGG+TGG | 0.491854 | 3.1:+88481095 | MS.gene23920:CDS |
| CTTTAGGTGGCTTGATAGCA+AGG | 0.492030 | 3.1:+88481108 | MS.gene23920:CDS |
| ACCGGATCCACTACTAACAT+TGG | 0.495965 | 3.1:-88482215 | None:intergenic |
| ACAACGCTATGTTGAACCTT+GGG | 0.503566 | 3.1:-88479526 | None:intergenic |
| AACAACGCTATGTTGAACCT+TGG | 0.505025 | 3.1:-88479527 | None:intergenic |
| AATATCTCTCTCATAAAGCT+TGG | 0.517633 | 3.1:-88481141 | None:intergenic |
| CCATAATGATCAAGTGAGTA+GGG | 0.520538 | 3.1:-88479696 | None:intergenic |
| ACCTCCTCTTCTTCTCCAGA+TGG | 0.522445 | 3.1:+88481686 | MS.gene23920:CDS |
| CATCCCCTTTAGCATCATGT+TGG | 0.522722 | 3.1:-88479630 | None:intergenic |
| ACGCCGCACCTTGGTTGTAG+AGG | 0.533774 | 3.1:+88481287 | MS.gene23920:CDS |
| GACTCCTAAATAGAGCTAGT+TGG | 0.537639 | 3.1:+88481975 | MS.gene23920:intron |
| CGCCGCACCTTGGTTGTAGA+GGG | 0.541933 | 3.1:+88481288 | MS.gene23920:CDS |
| ACGTCTGCAACGCCGCACCT+TGG | 0.547946 | 3.1:+88481278 | MS.gene23920:CDS |
| TGTCATGTTAGAAAATATGA+AGG | 0.548935 | 3.1:+88481221 | MS.gene23920:CDS |
| TCCTCTGGAAGAACGGAAGT+GGG | 0.550815 | 3.1:-88482178 | None:intergenic |
| GTCTCTACATTTACAATGTG+TGG | 0.550977 | 3.1:-88482148 | None:intergenic |
| TGGAACTTCCTCTGGAAGAA+CGG | 0.558559 | 3.1:-88482185 | None:intergenic |
| GCTTATGCCCTCTACAACCA+AGG | 0.563131 | 3.1:-88481295 | None:intergenic |
| ACCATAATGATCAAGTGAGT+AGG | 0.563645 | 3.1:-88479697 | None:intergenic |
| CGAACCATCTGGAGAAGAAG+AGG | 0.566975 | 3.1:-88481690 | None:intergenic |
| CCTAAATAGAGCTAGTTGGA+TGG | 0.569660 | 3.1:+88481979 | MS.gene23920:intron |
| ACCCACTTCCGTTCTTCCAG+AGG | 0.581065 | 3.1:+88482177 | MS.gene23920:CDS |
| CAACATGATGCTAAAGGGGA+TGG | 0.581086 | 3.1:+88479631 | MS.gene23920:CDS |
| AGTGAATCCAATGTTAGTAG+TGG | 0.581455 | 3.1:+88482208 | MS.gene23920:CDS |
| TCCGGTAAAATTGACTTCGA+AGG | 0.589799 | 3.1:+88482232 | MS.gene23920:CDS |
| ATTTCTAAGGAACTATCTCA+GGG | 0.594450 | 3.1:+88481161 | MS.gene23920:CDS |
| ATTTGACGGTGTTGATGTAA+CGG | 0.596656 | 3.1:+88480817 | MS.gene23920:CDS |
| TGGTTGTAGAGGGCATAAGC+AGG | 0.598834 | 3.1:+88481298 | MS.gene23920:CDS |
| AATCCAACATGATGCTAAAG+GGG | 0.615989 | 3.1:+88479627 | MS.gene23920:CDS |
| GGGAAATAGATTAGCAGAGG+AGG | 0.625847 | 3.1:+88480838 | MS.gene23920:CDS |
| GTCATAACGAATATTTGCAT+AGG | 0.638991 | 3.1:-88481867 | None:intergenic |
| ACCATCTGGAGAAGAAGAGG+AGG | 0.646740 | 3.1:-88481687 | None:intergenic |
| GCGTAGAAACGAGCTTCCAA+AGG | 0.649589 | 3.1:+88482019 | MS.gene23920:CDS |
| AACGGGAAATAGATTAGCAG+AGG | 0.651204 | 3.1:+88480835 | MS.gene23920:CDS |
| GGAATCACAACAGATACCCA+AGG | 0.675906 | 3.1:+88479510 | MS.gene23920:CDS |
| GAGTGAAATCCACATAACAA+AGG | 0.677854 | 3.1:-88481579 | None:intergenic |
| TGCCCTCTACAACCAAGGTG+CGG | 0.704644 | 3.1:-88481290 | None:intergenic |
| AATGTACAATAACATCATAG+GGG | 0.707394 | 3.1:-88479895 | None:intergenic |
| TTTCTAAGGAACTATCTCAG+GGG | 0.757402 | 3.1:+88481162 | MS.gene23920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATCTTTTTGAAAAAA+TGG | + | chr3.1:88482256-88482275 | MS.gene23920:intron | 10.0% |
| !! | AAATTAAGTATATCATATCA+CGG | - | chr3.1:88482065-88482084 | None:intergenic | 15.0% |
| !! | AATTCTATTCTTATTACAAA+GGG | + | chr3.1:88480247-88480266 | MS.gene23920:intron | 15.0% |
| !! | TTACATGAATTTAATATCTT+CGG | - | chr3.1:88481721-88481740 | None:intergenic | 15.0% |
| !!! | AAATCAATTTTTATCAACAT+AGG | + | chr3.1:88480555-88480574 | MS.gene23920:intron | 15.0% |
| !!! | TAAAGTATTAAAACTCATAT+TGG | - | chr3.1:88479756-88479775 | None:intergenic | 15.0% |
| !!! | TATTATTGTAGATATTTTGT+TGG | + | chr3.1:88482486-88482505 | MS.gene23920:intron | 15.0% |
| !! | AATGATAATAATCGTTAGAA+AGG | - | chr3.1:88479968-88479987 | None:intergenic | 20.0% |
| !! | AATGTAAAGTGATTTATGTT+TGG | - | chr3.1:88480489-88480508 | None:intergenic | 20.0% |
| !! | ATATTTGAGTAATCTTCAAA+TGG | - | chr3.1:88482434-88482453 | None:intergenic | 20.0% |
| !! | ATGTAAAGTGATTTATGTTT+GGG | - | chr3.1:88480488-88480507 | None:intergenic | 20.0% |
| !! | GAAGATATTAAATTCATGTA+AGG | + | chr3.1:88481720-88481739 | MS.gene23920:intron | 20.0% |
| !! | GAATTCTATTCTTATTACAA+AGG | + | chr3.1:88480246-88480265 | MS.gene23920:intron | 20.0% |
| !! | GTTAATAGCTAAGTTATTAA+CGG | - | chr3.1:88479802-88479821 | None:intergenic | 20.0% |
| !! | TACAATATCTAAAAAGTTCT+AGG | + | chr3.1:88482295-88482314 | MS.gene23920:intron | 20.0% |
| !! | TAGAATTATTACATGTGTTA+AGG | + | chr3.1:88480151-88480170 | MS.gene23920:intron | 20.0% |
| !! | TGAAAAATTAACTTAAACAG+AGG | - | chr3.1:88482466-88482485 | None:intergenic | 20.0% |
| !!! | ATACATTTTTTTTTACGCTA+TGG | - | chr3.1:88481494-88481513 | None:intergenic | 20.0% |
| !!! | TTGAAAAAATGGATTTCATT+TGG | + | chr3.1:88482267-88482286 | MS.gene23920:intron | 20.0% |
| ! | AAATATGAAGGAAAAATTGC+AGG | + | chr3.1:88481233-88481252 | MS.gene23920:CDS | 25.0% |
| ! | AATGTACAATAACATCATAG+GGG | - | chr3.1:88479898-88479917 | None:intergenic | 25.0% |
| ! | ACAATGTACAATAACATCAT+AGG | - | chr3.1:88479900-88479919 | None:intergenic | 25.0% |
| ! | ACTTTAATTGGAATATGCAA+TGG | - | chr3.1:88481925-88481944 | None:intergenic | 25.0% |
| ! | ATGATATAAATGCAATGACT+AGG | - | chr3.1:88480593-88480612 | None:intergenic | 25.0% |
| ! | CAATGCATTACATTAAATGA+TGG | - | chr3.1:88480754-88480773 | None:intergenic | 25.0% |
| ! | CAATGTACAATAACATCATA+GGG | - | chr3.1:88479899-88479918 | None:intergenic | 25.0% |
| ! | GCAGACGTAATAAAATTAAT+AGG | - | chr3.1:88481266-88481285 | None:intergenic | 25.0% |
| ! | TATAATATGAAGCCAGAATT+TGG | + | chr3.1:88480395-88480414 | MS.gene23920:intron | 25.0% |
| ! | TATTATATCTCTTTCTCTTC+AGG | + | chr3.1:88481813-88481832 | MS.gene23920:intron | 25.0% |
| ! | TCATTTATAGCTCATTCTTT+AGG | + | chr3.1:88481092-88481111 | MS.gene23920:CDS | 25.0% |
| ! | TCTTACCATCAGTTAAAAAT+AGG | - | chr3.1:88481659-88481678 | None:intergenic | 25.0% |
| ! | TGAACTAAAACAAAAGGATA+CGG | - | chr3.1:88481892-88481911 | None:intergenic | 25.0% |
| ! | TGCATTGAACAATAAATTCA+AGG | - | chr3.1:88480449-88480468 | None:intergenic | 25.0% |
| ! | TGTCATGTTAGAAAATATGA+AGG | + | chr3.1:88481221-88481240 | MS.gene23920:CDS | 25.0% |
| ! | TTCATGTAAGGTTTATTGTT+TGG | + | chr3.1:88481732-88481751 | MS.gene23920:intron | 25.0% |
| !! | AATTTTGTCTTCTCGAAAAA+TGG | - | chr3.1:88480317-88480336 | None:intergenic | 25.0% |
| !! | TATGTTGTTTGTTCATGATT+CGG | - | chr3.1:88481795-88481814 | None:intergenic | 25.0% |
| !! | TGTTTCTGAACTAAAACAAA+AGG | - | chr3.1:88481898-88481917 | None:intergenic | 25.0% |
| !! | TTATGAGAGAGATATTTCTA+AGG | + | chr3.1:88481148-88481167 | MS.gene23920:CDS | 25.0% |
| !! | TTTTACAATCAAAGCAAAAC+TGG | + | chr3.1:88480725-88480744 | MS.gene23920:intron | 25.0% |
| !! | TTTTGAATGAATTGAGTTTG+TGG | - | chr3.1:88480538-88480557 | None:intergenic | 25.0% |
| !!! | TAATCGTTAGAAAGGTATTA+AGG | - | chr3.1:88479960-88479979 | None:intergenic | 25.0% |
| !!! | TTTTTCCATTTTTGCTTTCA+TGG | - | chr3.1:88482407-88482426 | None:intergenic | 25.0% |
| AAGTTGAAATTCCCTAAGTT+TGG | + | chr3.1:88479595-88479614 | MS.gene23920:CDS | 30.0% | |
| AATATCTCTCTCATAAAGCT+TGG | - | chr3.1:88481144-88481163 | None:intergenic | 30.0% | |
| AATCTATGTCTCCTTTACTA+TGG | + | chr3.1:88481410-88481429 | MS.gene23920:intron | 30.0% | |
| ACTAATGCAATGCATAATGT+TGG | + | chr3.1:88480071-88480090 | MS.gene23920:intron | 30.0% | |
| ATTATGGTTAATGGTCTCAT+TGG | + | chr3.1:88479712-88479731 | MS.gene23920:CDS | 30.0% | |
| CACTTGATCATTATGGTTAA+TGG | + | chr3.1:88479703-88479722 | MS.gene23920:CDS | 30.0% | |
| GGTATTAAGGAAGAAAAAGA+AGG | - | chr3.1:88479947-88479966 | None:intergenic | 30.0% | |
| GTCATAACGAATATTTGCAT+AGG | - | chr3.1:88481870-88481889 | None:intergenic | 30.0% | |
| GTTATTGGGGGTAATTAAAT+AGG | + | chr3.1:88481457-88481476 | MS.gene23920:intron | 30.0% | |
| TAACTGATATAACCTGAGAA+AGG | - | chr3.1:88481043-88481062 | None:intergenic | 30.0% | |
| TATGTCATACTAATCTGTGT+TGG | + | chr3.1:88481511-88481530 | MS.gene23920:intron | 30.0% | |
| TCAAGGCTAAATATTAATCG+TGG | - | chr3.1:88480432-88480451 | None:intergenic | 30.0% | |
| TCTAACATGACATTCTTGAT+TGG | - | chr3.1:88481213-88481232 | None:intergenic | 30.0% | |
| TCTTCAACATTGACATTTGA+CGG | + | chr3.1:88480803-88480822 | MS.gene23920:CDS | 30.0% | |
| TTAAGGAAGAAAAAGAAGGA+AGG | - | chr3.1:88479943-88479962 | None:intergenic | 30.0% | |
| TTCTCACATGTTAACAAAGT+GGG | - | chr3.1:88482325-88482344 | None:intergenic | 30.0% | |
| TTTATAGCTCATTCTTTAGG+TGG | + | chr3.1:88481095-88481114 | MS.gene23920:CDS | 30.0% | |
| TTTCTCACATGTTAACAAAG+TGG | - | chr3.1:88482326-88482345 | None:intergenic | 30.0% | |
| ! | AAAGCTTCATAACATGGTTT+TGG | + | chr3.1:88481536-88481555 | MS.gene23920:intron | 30.0% |
| ! | AATGAAATTTTCCGAACACT+TGG | - | chr3.1:88481077-88481096 | None:intergenic | 30.0% |
| ! | ATACTTTTGCGAGATCAAAT+GGG | + | chr3.1:88482381-88482400 | MS.gene23920:intron | 30.0% |
| ! | ATGAAATTTTCCGAACACTT+GGG | - | chr3.1:88481076-88481095 | None:intergenic | 30.0% |
| ! | ATTTCTAAGGAACTATCTCA+GGG | + | chr3.1:88481161-88481180 | MS.gene23920:CDS | 30.0% |
| ! | TATATGCCCCAAAATTTGTT+GGG | - | chr3.1:88480215-88480234 | None:intergenic | 30.0% |
| ! | TATTTCTAAGGAACTATCTC+AGG | + | chr3.1:88481160-88481179 | MS.gene23920:CDS | 30.0% |
| ! | TTTGGAACTTCACATACTTT+AGG | + | chr3.1:88481554-88481573 | MS.gene23920:intron | 30.0% |
| !! | ATTCTGAAACAACCAAACTT+AGG | - | chr3.1:88479610-88479629 | None:intergenic | 30.0% |
| !! | TGATTTTCACAACTTGCTTA+TGG | + | chr3.1:88481761-88481780 | MS.gene23920:intron | 30.0% |
| !! | TTCTGAAACAACCAAACTTA+GGG | - | chr3.1:88479609-88479628 | None:intergenic | 30.0% |
| !!! | AAGCACCTATTTTTAACTGA+TGG | + | chr3.1:88481651-88481670 | MS.gene23920:CDS | 30.0% |
| !!! | CTTGTCTCTGAGATTTATTT+TGG | + | chr3.1:88480681-88480700 | MS.gene23920:intron | 30.0% |
| !!! | GATTTTTTTTACAGTTAGCG+AGG | + | chr3.1:88480653-88480672 | MS.gene23920:intron | 30.0% |
| !!! | TCTCGTGTCTTTTAAAATGT+CGG | - | chr3.1:88482123-88482142 | None:intergenic | 30.0% |
| AATCCAACATGATGCTAAAG+GGG | + | chr3.1:88479627-88479646 | MS.gene23920:CDS | 35.0% | |
| ACCATAATGATCAAGTGAGT+AGG | - | chr3.1:88479700-88479719 | None:intergenic | 35.0% | |
| AGAATCCAACATGATGCTAA+AGG | + | chr3.1:88479625-88479644 | MS.gene23920:CDS | 35.0% | |
| AGTGAATCCAATGTTAGTAG+TGG | + | chr3.1:88482208-88482227 | MS.gene23920:CDS | 35.0% | |
| AGTGTAATCAGCCATAGTAA+AGG | - | chr3.1:88481424-88481443 | None:intergenic | 35.0% | |
| ATATAACCTGAGAAAGGAGA+TGG | - | chr3.1:88481037-88481056 | None:intergenic | 35.0% | |
| ATTGAAGTTGTTGATGCTTC+TGG | + | chr3.1:88479661-88479680 | MS.gene23920:CDS | 35.0% | |
| CCATAATGATCAAGTGAGTA+GGG | - | chr3.1:88479699-88479718 | None:intergenic | 35.0% | |
| CTACTAACATTGGATTCACT+TGG | - | chr3.1:88482208-88482227 | None:intergenic | 35.0% | |
| CTATATGCCCCAAAATTTGT+TGG | - | chr3.1:88480216-88480235 | None:intergenic | 35.0% | |
| CTGCAAAGCAATTTCTCAAA+AGG | + | chr3.1:88479870-88479889 | MS.gene23920:CDS | 35.0% | |
| GAATCCAACATGATGCTAAA+GGG | + | chr3.1:88479626-88479645 | MS.gene23920:CDS | 35.0% | |
| GAGTGAAATCCACATAACAA+AGG | - | chr3.1:88481582-88481601 | None:intergenic | 35.0% | |
| GATGCAAAAACTCCAAATTC+TGG | - | chr3.1:88480410-88480429 | None:intergenic | 35.0% | |
| GTCTCTACATTTACAATGTG+TGG | - | chr3.1:88482151-88482170 | None:intergenic | 35.0% | |
| GTTATGTGGATTTCACTCTT+TGG | + | chr3.1:88481584-88481603 | MS.gene23920:CDS | 35.0% | |
| TATTACAAAGGGTGAAACCT+TGG | + | chr3.1:88480258-88480277 | MS.gene23920:intron | 35.0% | |
| TCATGTAAACTTACAGACAG+TGG | - | chr3.1:88481948-88481967 | None:intergenic | 35.0% | |
| TGCTACAAGTGATGGTTATT+GGG | + | chr3.1:88481443-88481462 | MS.gene23920:intron | 35.0% | |
| TGTATTGCAGTGCTCATAAT+TGG | + | chr3.1:88479840-88479859 | MS.gene23920:intron | 35.0% | |
| TTGGTGAAAGCTTCATAACA+TGG | + | chr3.1:88481530-88481549 | MS.gene23920:intron | 35.0% | |
| TTTGAATCTGTGTCTGTCTT+AGG | + | chr3.1:88480953-88480972 | MS.gene23920:intron | 35.0% | |
| ! | ACCTTCGAAGTCAATTTTAC+CGG | - | chr3.1:88482236-88482255 | None:intergenic | 35.0% |
| ! | AGTGCTTATCTTTTGAGCTT+TGG | - | chr3.1:88482356-88482375 | None:intergenic | 35.0% |
| ! | CATACTTTTGCGAGATCAAA+TGG | + | chr3.1:88482380-88482399 | MS.gene23920:intron | 35.0% |
| ! | CTTTAGGTACCTTTGTTATG+TGG | + | chr3.1:88481570-88481589 | MS.gene23920:intron | 35.0% |
| ! | GCATAAGCAGGTAATTCTTT+TGG | + | chr3.1:88481310-88481329 | MS.gene23920:intron | 35.0% |
| ! | TACAGACAGTGGACTTTAAT+TGG | - | chr3.1:88481937-88481956 | None:intergenic | 35.0% |
| ! | TTGTGGTCCCAACAAATTTT+GGG | + | chr3.1:88480205-88480224 | MS.gene23920:intron | 35.0% |
| ! | TTTCTAAGGAACTATCTCAG+GGG | + | chr3.1:88481162-88481181 | MS.gene23920:CDS | 35.0% |
| !! | AAGGAAGGTGTTAGGATTTA+AGG | - | chr3.1:88479928-88479947 | None:intergenic | 35.0% |
| !! | AGAAAAAGAAGGAAGGTGTT+AGG | - | chr3.1:88479936-88479955 | None:intergenic | 35.0% |
| !! | AGGAAGGTGTTAGGATTTAA+GGG | - | chr3.1:88479927-88479946 | None:intergenic | 35.0% |
| !! | ATTTGACGGTGTTGATGTAA+CGG | + | chr3.1:88480817-88480836 | MS.gene23920:CDS | 35.0% |
| !!! | TTTTTTCCATCTCCTTTCTC+AGG | + | chr3.1:88481028-88481047 | MS.gene23920:intron | 35.0% |
| AAACAGCATCTCGTCTTTCA+CGG | + | chr3.1:88481610-88481629 | MS.gene23920:CDS | 40.0% | |
| AACAACGCTATGTTGAACCT+TGG | - | chr3.1:88479530-88479549 | None:intergenic | 40.0% | |
| AACGGGAAATAGATTAGCAG+AGG | + | chr3.1:88480835-88480854 | MS.gene23920:CDS | 40.0% | |
| ACAACGCTATGTTGAACCTT+GGG | - | chr3.1:88479529-88479548 | None:intergenic | 40.0% | |
| ACATAGAGACAGGTGAAACT+AGG | - | chr3.1:88480184-88480203 | None:intergenic | 40.0% | |
| ATGGGCCATGAAAGCAAAAA+TGG | + | chr3.1:88482399-88482418 | MS.gene23920:intron | 40.0% | |
| ATTGCACTCGCAGTTCATAT+TGG | + | chr3.1:88480905-88480924 | MS.gene23920:intron | 40.0% | |
| CCCTACTCACTTGATCATTA+TGG | + | chr3.1:88479696-88479715 | MS.gene23920:CDS | 40.0% | |
| CCTAAATAGAGCTAGTTGGA+TGG | + | chr3.1:88481979-88481998 | MS.gene23920:intron | 40.0% | |
| CTACAAGTGATGGTTATTGG+GGG | + | chr3.1:88481445-88481464 | MS.gene23920:intron | 40.0% | |
| CTGCTACAAGTGATGGTTAT+TGG | + | chr3.1:88481442-88481461 | MS.gene23920:intron | 40.0% | |
| GACTCCTAAATAGAGCTAGT+TGG | + | chr3.1:88481975-88481994 | MS.gene23920:intron | 40.0% | |
| GATGGAGCACATCATCTATA+AGG | + | chr3.1:88481997-88482016 | MS.gene23920:CDS | 40.0% | |
| GATTACACTGCTACAAGTGA+TGG | + | chr3.1:88481435-88481454 | MS.gene23920:intron | 40.0% | |
| GCAATGACTAGGTGTTTGTT+TGG | - | chr3.1:88480582-88480601 | None:intergenic | 40.0% | |
| GCTACAAGTGATGGTTATTG+GGG | + | chr3.1:88481444-88481463 | MS.gene23920:intron | 40.0% | |
| TCACGGTTTCTTGGTAAAAC+AGG | + | chr3.1:88481627-88481646 | MS.gene23920:CDS | 40.0% | |
| TGAAGGAAAAATTGCAGGAC+TGG | + | chr3.1:88481238-88481257 | MS.gene23920:CDS | 40.0% | |
| TTCTCTTCAGGTCTGCTTTA+CGG | + | chr3.1:88481825-88481844 | MS.gene23920:intron | 40.0% | |
| ! | AAATTTTCCGAACACTTGGG+TGG | - | chr3.1:88481073-88481092 | None:intergenic | 40.0% |
| ! | ATCACGGTGCATGAGTTTTA+CGG | - | chr3.1:88482049-88482068 | None:intergenic | 40.0% |
| ! | CTTGTGGTCCCAACAAATTT+TGG | + | chr3.1:88480204-88480223 | MS.gene23920:intron | 40.0% |
| ! | TCCGGTAAAATTGACTTCGA+AGG | + | chr3.1:88482232-88482251 | MS.gene23920:CDS | 40.0% |
| ! | TGAGTTTTACGGTCTACCTT+TGG | - | chr3.1:88482038-88482057 | None:intergenic | 40.0% |
| ! | TGTGGTCCCAACAAATTTTG+GGG | + | chr3.1:88480206-88480225 | MS.gene23920:intron | 40.0% |
| !! | CCATCCAACTAGCTCTATTT+AGG | - | chr3.1:88481982-88482001 | None:intergenic | 40.0% |
| !! | TCCAATGTTAGTAGTGGATC+CGG | + | chr3.1:88482214-88482233 | MS.gene23920:CDS | 40.0% |
| !! | TTTGACGGTGTTGATGTAAC+GGG | + | chr3.1:88480818-88480837 | MS.gene23920:CDS | 40.0% |
| !!! | TGCATTGCTATTTTGCATGC+AGG | + | chr3.1:88480767-88480786 | MS.gene23920:intron | 40.0% |
| ACCGGATCCACTACTAACAT+TGG | - | chr3.1:88482218-88482237 | None:intergenic | 45.0% | |
| CAACATGATGCTAAAGGGGA+TGG | + | chr3.1:88479631-88479650 | MS.gene23920:CDS | 45.0% | |
| CATCCCCTTTAGCATCATGT+TGG | - | chr3.1:88479633-88479652 | None:intergenic | 45.0% | |
| GATTCACTTGGAACTTCCTC+TGG | - | chr3.1:88482196-88482215 | None:intergenic | 45.0% | |
| GGAATCACAACAGATACCCA+AGG | + | chr3.1:88479510-88479529 | MS.gene23920:CDS | 45.0% | |
| GGGAAATAGATTAGCAGAGG+AGG | + | chr3.1:88480838-88480857 | MS.gene23920:CDS | 45.0% | |
| TAAAACGCCACCCAAGTGTT+CGG | + | chr3.1:88481063-88481082 | MS.gene23920:CDS | 45.0% | |
| TCACCTGTCTCTATGTCTTG+TGG | + | chr3.1:88480188-88480207 | MS.gene23920:intron | 45.0% | |
| TCTCGTCTTTCACGGTTTCT+TGG | + | chr3.1:88481618-88481637 | MS.gene23920:CDS | 45.0% | |
| TGGGGCATATAGTTCTTGCT+TGG | + | chr3.1:88480224-88480243 | MS.gene23920:intron | 45.0% | |
| TGGTTAATGGTCTCATTGGC+AGG | + | chr3.1:88479716-88479735 | MS.gene23920:CDS | 45.0% | |
| TTGGTTGGCAAGTGTATGCT+TGG | + | chr3.1:88480289-88480308 | MS.gene23920:intron | 45.0% | |
| ! | CTTTAGGTGGCTTGATAGCA+AGG | + | chr3.1:88481108-88481127 | MS.gene23920:CDS | 45.0% |
| ! | GAGGAGGTGTGTGATTTCTT+TGG | + | chr3.1:88480854-88480873 | MS.gene23920:intron | 45.0% |
| ! | TGGAACTTCCTCTGGAAGAA+CGG | - | chr3.1:88482188-88482207 | None:intergenic | 45.0% |
| !!! | CAATATTTTTTTTTTTTTTT+TGG | - | chr3.1:88480131-88480150 | None:intergenic | 5.0% |
| ACCATCTGGAGAAGAAGAGG+AGG | - | chr3.1:88481690-88481709 | None:intergenic | 50.0% | |
| ACCTCCTCTTCTTCTCCAGA+TGG | + | chr3.1:88481686-88481705 | MS.gene23920:CDS | 50.0% | |
| ATAGGCAACGCGACGTTTGA+AGG | - | chr3.1:88481852-88481871 | None:intergenic | 50.0% | |
| CGAACCATCTGGAGAAGAAG+AGG | - | chr3.1:88481693-88481712 | None:intergenic | 50.0% | |
| GCGTAGAAACGAGCTTCCAA+AGG | + | chr3.1:88482019-88482038 | MS.gene23920:CDS | 50.0% | |
| GCTTATGCCCTCTACAACCA+AGG | - | chr3.1:88481298-88481317 | None:intergenic | 50.0% | |
| GGACCACAAGACATAGAGAC+AGG | - | chr3.1:88480194-88480213 | None:intergenic | 50.0% | |
| ! | TCCTCTGGAAGAACGGAAGT+GGG | - | chr3.1:88482181-88482200 | None:intergenic | 50.0% |
| ! | TGGTTGTAGAGGGCATAAGC+AGG | + | chr3.1:88481298-88481317 | MS.gene23920:CDS | 50.0% |
| ! | TTCCTCTGGAAGAACGGAAG+TGG | - | chr3.1:88482182-88482201 | None:intergenic | 50.0% |
| !! | TGAAACCTTGGTGCTGTGGT+TGG | + | chr3.1:88480270-88480289 | MS.gene23920:intron | 50.0% |
| ACCCACTTCCGTTCTTCCAG+AGG | + | chr3.1:88482177-88482196 | MS.gene23920:CDS | 55.0% | |
| CTTCGGAGTCACGAACCATC+TGG | - | chr3.1:88481704-88481723 | None:intergenic | 55.0% | |
| TGCCCTCTACAACCAAGGTG+CGG | - | chr3.1:88481293-88481312 | None:intergenic | 55.0% | |
| !! | ACCTTGGTGCTGTGGTTGGT+TGG | + | chr3.1:88480274-88480293 | MS.gene23920:intron | 55.0% |
| !! | AGGGTGAAACCTTGGTGCTG+TGG | + | chr3.1:88480266-88480285 | MS.gene23920:intron | 55.0% |
| ACGCCGCACCTTGGTTGTAG+AGG | + | chr3.1:88481287-88481306 | MS.gene23920:CDS | 60.0% | |
| CGCCGCACCTTGGTTGTAGA+GGG | + | chr3.1:88481288-88481307 | MS.gene23920:CDS | 60.0% | |
| GCCAACCAACCACAGCACCA+AGG | - | chr3.1:88480278-88480297 | None:intergenic | 60.0% | |
| ACGTCTGCAACGCCGCACCT+TGG | + | chr3.1:88481278-88481297 | MS.gene23920:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 88479508 | 88482513 | 88479508 | ID=MS.gene23920 |
| chr3.1 | mRNA | 88479508 | 88482513 | 88479508 | ID=MS.gene23920.t1;Parent=MS.gene23920 |
| chr3.1 | exon | 88479508 | 88479737 | 88479508 | ID=MS.gene23920.t1.exon1;Parent=MS.gene23920.t1 |
| chr3.1 | CDS | 88479508 | 88479737 | 88479508 | ID=cds.MS.gene23920.t1;Parent=MS.gene23920.t1 |
| chr3.1 | exon | 88479850 | 88479917 | 88479850 | ID=MS.gene23920.t1.exon2;Parent=MS.gene23920.t1 |
| chr3.1 | CDS | 88479850 | 88479917 | 88479850 | ID=cds.MS.gene23920.t1;Parent=MS.gene23920.t1 |
| chr3.1 | exon | 88480789 | 88480859 | 88480789 | ID=MS.gene23920.t1.exon3;Parent=MS.gene23920.t1 |
| chr3.1 | CDS | 88480789 | 88480859 | 88480789 | ID=cds.MS.gene23920.t1;Parent=MS.gene23920.t1 |
| chr3.1 | exon | 88481050 | 88481319 | 88481050 | ID=MS.gene23920.t1.exon4;Parent=MS.gene23920.t1 |
| chr3.1 | CDS | 88481050 | 88481319 | 88481050 | ID=cds.MS.gene23920.t1;Parent=MS.gene23920.t1 |
| chr3.1 | exon | 88481576 | 88481736 | 88481576 | ID=MS.gene23920.t1.exon5;Parent=MS.gene23920.t1 |
| chr3.1 | CDS | 88481576 | 88481736 | 88481576 | ID=cds.MS.gene23920.t1;Parent=MS.gene23920.t1 |
| chr3.1 | exon | 88481835 | 88481890 | 88481835 | ID=MS.gene23920.t1.exon6;Parent=MS.gene23920.t1 |
| chr3.1 | CDS | 88481835 | 88481890 | 88481835 | ID=cds.MS.gene23920.t1;Parent=MS.gene23920.t1 |
| chr3.1 | exon | 88481988 | 88482040 | 88481988 | ID=MS.gene23920.t1.exon7;Parent=MS.gene23920.t1 |
| chr3.1 | CDS | 88481988 | 88482040 | 88481988 | ID=cds.MS.gene23920.t1;Parent=MS.gene23920.t1 |
| chr3.1 | exon | 88482118 | 88482253 | 88482118 | ID=MS.gene23920.t1.exon8;Parent=MS.gene23920.t1 |
| chr3.1 | CDS | 88482118 | 88482253 | 88482118 | ID=cds.MS.gene23920.t1;Parent=MS.gene23920.t1 |
| chr3.1 | exon | 88482497 | 88482513 | 88482497 | ID=MS.gene23920.t1.exon9;Parent=MS.gene23920.t1 |
| chr3.1 | CDS | 88482497 | 88482513 | 88482497 | ID=cds.MS.gene23920.t1;Parent=MS.gene23920.t1 |
| Gene Sequence |
| Protein sequence |
