Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23978.t1 | XP_013468448.1 | 94 | 713 | 43 | 0 | 1 | 713 | 1 | 713 | 0.00E+00 | 1330.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23978.t1 | Q66GN3 | 58.8 | 719 | 286 | 3 | 1 | 713 | 25 | 739 | 2.9e-232 | 806.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23978.t1 | A0A072VWM1 | 94.0 | 713 | 43 | 0 | 1 | 713 | 1 | 713 | 0.0e+00 | 1330.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66459 | MS.gene23978 | PPI |
| MS.gene23978 | MS.gene051693 | PPI |
| MS.gene24475 | MS.gene23978 | PPI |
| MS.gene23978 | MS.gene00502 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23978.t1 | MTR_1g069630 | 96.634 | 713 | 24 | 0 | 1 | 713 | 1 | 713 | 0.0 | 1425 |
| MS.gene23978.t1 | MTR_7g097230 | 68.575 | 716 | 219 | 3 | 1 | 713 | 16 | 728 | 0.0 | 982 |
| MS.gene23978.t1 | MTR_1g075480 | 57.997 | 719 | 288 | 7 | 1 | 713 | 35 | 745 | 0.0 | 788 |
| MS.gene23978.t1 | MTR_1g075480 | 57.997 | 719 | 288 | 7 | 1 | 713 | 22 | 732 | 0.0 | 788 |
| MS.gene23978.t1 | MTR_1g075480 | 57.756 | 722 | 288 | 8 | 1 | 713 | 35 | 748 | 0.0 | 783 |
| MS.gene23978.t1 | MTR_7g097230 | 67.263 | 559 | 180 | 2 | 1 | 556 | 16 | 574 | 0.0 | 746 |
| MS.gene23978.t1 | MTR_1g075480 | 58.667 | 600 | 237 | 4 | 15 | 609 | 35 | 628 | 0.0 | 674 |
| MS.gene23978.t1 | MTR_5g026810 | 47.923 | 674 | 343 | 5 | 40 | 712 | 26 | 692 | 0.0 | 590 |
| MS.gene23978.t1 | MTR_8g071330 | 45.322 | 684 | 367 | 4 | 29 | 712 | 9 | 685 | 0.0 | 577 |
| MS.gene23978.t1 | MTR_1g018040 | 44.167 | 720 | 380 | 12 | 6 | 712 | 6 | 716 | 0.0 | 537 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23978.t1 | AT4G28600 | 58.832 | 719 | 286 | 3 | 1 | 713 | 25 | 739 | 0.0 | 798 |
| MS.gene23978.t1 | AT4G28600 | 58.832 | 719 | 286 | 3 | 1 | 713 | 25 | 739 | 0.0 | 798 |
| MS.gene23978.t1 | AT4G28600 | 58.425 | 724 | 286 | 4 | 1 | 713 | 25 | 744 | 0.0 | 792 |
| MS.gene23978.t1 | AT2G43040 | 47.781 | 676 | 343 | 5 | 40 | 712 | 32 | 700 | 0.0 | 570 |
| MS.gene23978.t1 | AT2G43040 | 47.781 | 676 | 343 | 5 | 40 | 712 | 32 | 700 | 0.0 | 570 |
| MS.gene23978.t1 | AT1G27460 | 41.538 | 715 | 379 | 10 | 6 | 712 | 6 | 689 | 2.50e-165 | 492 |
| MS.gene23978.t1 | AT1G27460 | 41.958 | 715 | 380 | 10 | 6 | 712 | 6 | 693 | 3.79e-165 | 492 |
| MS.gene23978.t1 | AT1G27460 | 42.727 | 550 | 291 | 8 | 6 | 547 | 6 | 539 | 4.80e-127 | 389 |
Find 158 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCGGCGTTCTTTGTTTC+TGG | 0.051091 | 1.3:+49089551 | None:intergenic |
| TTTCCGGTTCACCATGATTT+TGG | 0.113656 | 1.3:+49089520 | None:intergenic |
| TTCATTTGCTCTGTCTGTTT+CGG | 0.188123 | 1.3:-49088642 | MS.gene23978:CDS |
| TCATTTGCTCTGTCTGTTTC+GGG | 0.193859 | 1.3:-49088641 | MS.gene23978:CDS |
| ATCGAGTTTAGCCAATTATT+TGG | 0.205375 | 1.3:-49088612 | MS.gene23978:CDS |
| TACCCTCAGCCTTGTGAAAA+AGG | 0.205859 | 1.3:+49087121 | None:intergenic |
| CAGGCTCTTGAAAGGTTTAA+AGG | 0.236026 | 1.3:-49089438 | MS.gene23978:intron |
| ATCATCTGCACACTCAAAAT+TGG | 0.251662 | 1.3:-49088303 | MS.gene23978:CDS |
| CCAATCTTGCAAAGTTATTA+TGG | 0.251753 | 1.3:-49089053 | MS.gene23978:CDS |
| CATTCAGCACCAAAGTTATC+AGG | 0.259185 | 1.3:+49088998 | None:intergenic |
| ACACGTTCCCGGTTTGTTAA+TGG | 0.260326 | 1.3:-49088456 | MS.gene23978:CDS |
| GGCGAGCACTTCTTCATAAA+TGG | 0.260430 | 1.3:-49088883 | MS.gene23978:CDS |
| GAGTAATTCTTCCAAATAAT+TGG | 0.272977 | 1.3:+49088601 | None:intergenic |
| CCATAATAACTTTGCAAGAT+TGG | 0.280709 | 1.3:+49089053 | None:intergenic |
| CCATTTGAGAACGTAGATTA+GGG | 0.289798 | 1.3:+49088780 | None:intergenic |
| TTCTGCTTCTTCTATATTAC+CGG | 0.290062 | 1.3:+49090146 | None:intergenic |
| TCAGCAAGCTTCCACAATTC+TGG | 0.299846 | 1.3:+49088935 | None:intergenic |
| GCCTCTTCTATGTTGTTTGC+CGG | 0.304221 | 1.3:+49088743 | None:intergenic |
| CAAATTCAGAGCAAAAGTTT+TGG | 0.314010 | 1.3:-49087888 | MS.gene23978:CDS |
| TGCAAAGTGCGTCATAAAAC+TGG | 0.329264 | 1.3:-49088126 | MS.gene23978:CDS |
| AACAAACCGGGAACGTGTTC+CGG | 0.330656 | 1.3:+49088461 | None:intergenic |
| TTCTTGGAAGAAGCTATATA+AGG | 0.353884 | 1.3:-49087865 | MS.gene23978:intron |
| GATCTAGCTCTTTGTAATTA+CGG | 0.355641 | 1.3:-49088545 | MS.gene23978:CDS |
| GAAAGGCCGGAACACGTTCC+CGG | 0.359395 | 1.3:-49088467 | MS.gene23978:CDS |
| TCTAAAAGCAAAATCGTTGC+AGG | 0.362819 | 1.3:-49089457 | MS.gene23978:CDS |
| GGAAGATACGAGTATCAAAA+AGG | 0.369028 | 1.3:-49089651 | MS.gene23978:CDS |
| TACTGAAGGGTCTCTCATTC+CGG | 0.371242 | 1.3:+49088208 | None:intergenic |
| AATGGACGGCTCGTTTGTTC+CGG | 0.372709 | 1.3:-49088762 | MS.gene23978:CDS |
| CATAATAACTTTGCAAGATT+GGG | 0.372836 | 1.3:+49089054 | None:intergenic |
| GGAACTTGGAAGTGGAAATA+TGG | 0.379485 | 1.3:-49087648 | MS.gene23978:CDS |
| TGAATCTTTGCTACAGTCCC+TGG | 0.383146 | 1.3:+49088851 | None:intergenic |
| GAAGGTGGTTCCAATGTTAA+AGG | 0.388143 | 1.3:-49088104 | MS.gene23978:CDS |
| GTGAAGCTACTTTGTCTTAC+CGG | 0.388356 | 1.3:-49088904 | MS.gene23978:CDS |
| AATGTTGCAAAATTCTATCT+TGG | 0.388770 | 1.3:-49088332 | MS.gene23978:CDS |
| CTTTGGATCAGACTGGGAAA+TGG | 0.392510 | 1.3:-49088010 | MS.gene23978:CDS |
| TCAGAGAGCACTTGAGAGCT+TGG | 0.397172 | 1.3:-49088378 | MS.gene23978:CDS |
| GCGTTCTTTGTTTCTGGAAA+GGG | 0.399083 | 1.3:+49089557 | None:intergenic |
| ATCTATTATCAACGCTGCTT+TGG | 0.399909 | 1.3:-49088027 | MS.gene23978:CDS |
| TCAGACTGGGAAATGGGATC+AGG | 0.402096 | 1.3:-49088003 | MS.gene23978:CDS |
| GCTTCTGCTTGGTATAATCT+TGG | 0.405820 | 1.3:-49087144 | MS.gene23978:CDS |
| CCTACGCTCAGGGGAGCAAT+TGG | 0.409024 | 1.3:-49090277 | MS.gene23978:CDS |
| AAGTTATCAGGCAAGCCTTC+AGG | 0.409413 | 1.3:+49089010 | None:intergenic |
| ACAGAATGTATAGACATTTC+CGG | 0.415399 | 1.3:+49089504 | None:intergenic |
| TCCATTTGAGAACGTAGATT+AGG | 0.418331 | 1.3:+49088779 | None:intergenic |
| CCGAGATCGTGCTAGGAACT+TGG | 0.420476 | 1.3:-49087662 | MS.gene23978:CDS |
| TTTAGAAGCCATTAACAAAC+CGG | 0.423076 | 1.3:+49088448 | None:intergenic |
| TGGTGCTGAATGTAAATTGC+AGG | 0.428911 | 1.3:-49088987 | MS.gene23978:CDS |
| ATCTGAGGCACTTCAAGCCT+TGG | 0.438993 | 1.3:-49088249 | MS.gene23978:CDS |
| TCTCTCTCAATAGAATTGAA+TGG | 0.439125 | 1.3:-49088688 | MS.gene23978:CDS |
| GAATTTCTCGAAATCAGAAA+TGG | 0.439970 | 1.3:+49088280 | None:intergenic |
| GTACTTCAGCAGTGGAGATT+AGG | 0.444856 | 1.3:+49087244 | None:intergenic |
| CATGGAATCTTTCACTTCGA+TGG | 0.444879 | 1.3:+49088567 | None:intergenic |
| ACCCCTTCTTCTGCAAGACT+AGG | 0.448007 | 1.3:+49088410 | None:intergenic |
| TTCCCAAAATCATGGTGAAC+CGG | 0.449962 | 1.3:-49089523 | MS.gene23978:CDS |
| TTTGGATCAGACTGGGAAAT+GGG | 0.455022 | 1.3:-49088009 | MS.gene23978:CDS |
| CTCTCTCAATAGAATTGAAT+GGG | 0.455430 | 1.3:-49088687 | MS.gene23978:CDS |
| GGCGTTCTTTGTTTCTGGAA+AGG | 0.457269 | 1.3:+49089556 | None:intergenic |
| GGCGTGTCTTTCAAAATCTA+AGG | 0.457296 | 1.3:-49087575 | MS.gene23978:CDS |
| CCCCTTCTTCTGCAAGACTA+GGG | 0.461370 | 1.3:+49088411 | None:intergenic |
| CGGAGCAGGTAAGGACTTGA+TGG | 0.465727 | 1.3:-49088525 | MS.gene23978:CDS |
| CCCTAATCTACGTTCTCAAA+TGG | 0.465907 | 1.3:-49088780 | MS.gene23978:CDS |
| ATTAGGCTGCGGACATGGCC+AGG | 0.467685 | 1.3:+49087261 | None:intergenic |
| CAAAGTTATTATGGACATAG+TGG | 0.467812 | 1.3:-49089044 | MS.gene23978:CDS |
| ACGCCTCTGCATCATGCCAC+TGG | 0.468078 | 1.3:+49087593 | None:intergenic |
| GAAGGCTTGCCTGATAACTT+TGG | 0.468639 | 1.3:-49089007 | MS.gene23978:CDS |
| CATAAATGGAATCTCGATCC+AGG | 0.473610 | 1.3:-49088869 | MS.gene23978:CDS |
| CTACGCTCAGGGGAGCAATT+GGG | 0.477613 | 1.3:-49090276 | MS.gene23978:CDS |
| GTCCCTGGTGACAAGAGATT+CGG | 0.477939 | 1.3:+49090227 | None:intergenic |
| ACAATGAAGTTCCTACGCTC+AGG | 0.478204 | 1.3:-49090288 | MS.gene23978:CDS |
| CAGTAACCATCCTTTAACAT+TGG | 0.480051 | 1.3:+49088094 | None:intergenic |
| AACCCTAGTCTTGCAGAAGA+AGG | 0.483388 | 1.3:-49088413 | MS.gene23978:CDS |
| GTCTTTGAGGGAATAGATAT+AGG | 0.483903 | 1.3:-49089606 | MS.gene23978:CDS |
| CAGGAAGCTAGAGCATTACT+AGG | 0.486649 | 1.3:-49089672 | MS.gene23978:CDS |
| CGTTCTGCCAGCAGTTTCCA+AGG | 0.488431 | 1.3:+49088232 | None:intergenic |
| TGAGGGTAAAATATCATCAT+TGG | 0.491744 | 1.3:-49087106 | MS.gene23978:CDS |
| AGCTGCATTACATGTCTTTG+AGG | 0.493813 | 1.3:-49089619 | MS.gene23978:CDS |
| TATTTGGAAGAATTACTCCC+TGG | 0.494270 | 1.3:-49088596 | MS.gene23978:CDS |
| GAAACTGCTGGCAGAACGAC+CGG | 0.498236 | 1.3:-49088227 | MS.gene23978:CDS |
| GCTCTTTGTAATTACGGAGC+AGG | 0.499405 | 1.3:-49088539 | MS.gene23978:CDS |
| GATGCTTTAGACATTGATCC+TGG | 0.500078 | 1.3:-49087279 | MS.gene23978:CDS |
| TTGTAATTACGGAGCAGGTA+AGG | 0.501729 | 1.3:-49088534 | MS.gene23978:CDS |
| TCACTTCGATGGATAGTCCC+AGG | 0.503053 | 1.3:+49088578 | None:intergenic |
| AATCGTTGCAGGCTCTTGAA+AGG | 0.510742 | 1.3:-49089446 | MS.gene23978:CDS |
| CATCCGAATCTCTTGTCACC+AGG | 0.512909 | 1.3:-49090230 | MS.gene23978:CDS |
| CGCCTCTGCATCATGCCACT+GGG | 0.513605 | 1.3:+49087594 | None:intergenic |
| AACGCTGCTTTGGATCAGAC+TGG | 0.514212 | 1.3:-49088017 | MS.gene23978:CDS |
| AATTACAAAGAGCTAGATCA+TGG | 0.514312 | 1.3:+49088549 | None:intergenic |
| GCTGCATTACATGTCTTTGA+GGG | 0.515819 | 1.3:-49089618 | MS.gene23978:CDS |
| TTGAGCTACTTCCAGAATTG+TGG | 0.516002 | 1.3:-49088946 | MS.gene23978:CDS |
| AAGAAACATTCCCAAAATCA+TGG | 0.519105 | 1.3:-49089531 | MS.gene23978:CDS |
| GTGACAAGAGATTCGGATGT+AGG | 0.519232 | 1.3:+49090234 | None:intergenic |
| CTGAGATGGTATAGTACTGA+AGG | 0.523029 | 1.3:+49088194 | None:intergenic |
| GCTAAAATTCAAATTGCACT+TGG | 0.524807 | 1.3:-49087960 | MS.gene23978:CDS |
| ATTTGGAAGAATTACTCCCT+GGG | 0.525471 | 1.3:-49088595 | MS.gene23978:CDS |
| GAATTATCTCTGCGAGAAAG+TGG | 0.528266 | 1.3:-49090126 | MS.gene23978:CDS |
| TGGAGATTAGGCTGCGGACA+TGG | 0.529432 | 1.3:+49087256 | None:intergenic |
| AAGCTGAGTGTACGTCTCAA+TGG | 0.530685 | 1.3:+49087923 | None:intergenic |
| CTTCAAGCCTTGGAAACTGC+TGG | 0.530954 | 1.3:-49088239 | MS.gene23978:CDS |
| ACCCTAGTCTTGCAGAAGAA+GGG | 0.531321 | 1.3:-49088412 | MS.gene23978:CDS |
| CCAAGTTCCTAGCACGATCT+CGG | 0.533706 | 1.3:+49087662 | None:intergenic |
| GAAAGGTGGTCTAAAATTGA+AGG | 0.534995 | 1.3:+49088662 | None:intergenic |
| GGAAATGTCTATACATTCTG+TGG | 0.537831 | 1.3:-49089502 | MS.gene23978:CDS |
| AATTGTTGAGTGATAGAGAA+AGG | 0.538244 | 1.3:-49088484 | MS.gene23978:CDS |
| AGGCGTAATGTATGAAGCAA+AGG | 0.544212 | 1.3:-49087334 | MS.gene23978:CDS |
| AGAGCACTTGAGAGCTTGGA+CGG | 0.546004 | 1.3:-49088374 | MS.gene23978:CDS |
| TCGTGCTAGGAACTTGGAAG+TGG | 0.547148 | 1.3:-49087656 | MS.gene23978:CDS |
| TATATAATATGTCATCTGAA+AGG | 0.549345 | 1.3:+49087024 | None:intergenic |
| AGTGATCATTCTTTCCTACC+TGG | 0.549462 | 1.3:-49090192 | MS.gene23978:CDS |
| GGCGTAATGTATGAAGCAAA+GGG | 0.550921 | 1.3:-49087333 | MS.gene23978:CDS |
| AATAATTGGCTAAACTCGAT+AGG | 0.551034 | 1.3:+49088615 | None:intergenic |
| CAATGAAGTTCCTACGCTCA+GGG | 0.553279 | 1.3:-49090287 | MS.gene23978:CDS |
| TGACATCTAGAAGCAGAATA+CGG | 0.557828 | 1.3:+49087544 | None:intergenic |
| ACAGATTGAATGCTTCTGCT+TGG | 0.559962 | 1.3:-49087155 | MS.gene23978:CDS |
| CAGACTGGGAAATGGGATCA+GGG | 0.561941 | 1.3:-49088002 | MS.gene23978:CDS |
| GTTGAGTGATAGAGAAAGGC+CGG | 0.563279 | 1.3:-49088480 | MS.gene23978:CDS |
| CCCTAGTCTTGCAGAAGAAG+GGG | 0.568534 | 1.3:-49088411 | MS.gene23978:CDS |
| GTGGTTCCAATGTTAAAGGA+TGG | 0.575049 | 1.3:-49088100 | MS.gene23978:CDS |
| TTCCCAGTGGCATGATGCAG+AGG | 0.575200 | 1.3:-49087596 | MS.gene23978:CDS |
| CACTTCGATGGATAGTCCCA+GGG | 0.576038 | 1.3:+49088579 | None:intergenic |
| TGGAAAACTTGATCACAAGT+TGG | 0.577745 | 1.3:-49090172 | MS.gene23978:CDS |
| AGGGTAACCGAGATCGTGCT+AGG | 0.578066 | 1.3:-49087669 | MS.gene23978:CDS |
| ACTTCCTGAAAAGAAGTCCC+TGG | 0.578708 | 1.3:+49090212 | None:intergenic |
| CAGCGTATTCTAAACTGAGA+TGG | 0.582160 | 1.3:+49088180 | None:intergenic |
| AAGGATGGTTACTGTTGGCA+CGG | 0.592491 | 1.3:-49088085 | MS.gene23978:CDS |
| GTGGAATCTTCATTGCCTGA+AGG | 0.600900 | 1.3:-49089025 | MS.gene23978:CDS |
| TTAGAAGCCATTAACAAACC+GGG | 0.606436 | 1.3:+49088449 | None:intergenic |
| ATAAATGGAATCTCGATCCA+GGG | 0.607813 | 1.3:-49088868 | MS.gene23978:CDS |
| ATTGCAGGAGACCGTGAGCA+AGG | 0.607861 | 1.3:-49088972 | MS.gene23978:CDS |
| ATTTATGAAGAAGTGCTCGC+CGG | 0.609816 | 1.3:+49088885 | None:intergenic |
| TGTCATCTGAAAGGTTCAAG+TGG | 0.610618 | 1.3:+49087033 | None:intergenic |
| ACGCTGCTTTGGATCAGACT+GGG | 0.611127 | 1.3:-49088016 | MS.gene23978:CDS |
| TGAGATGGTATAGTACTGAA+GGG | 0.615082 | 1.3:+49088195 | None:intergenic |
| CCAATTGCTCCCCTGAGCGT+AGG | 0.615359 | 1.3:+49090277 | None:intergenic |
| TAGCTCAACTGCCTTGCTCA+CGG | 0.616214 | 1.3:+49088961 | None:intergenic |
| CGCTCAGGGGAGCAATTGGG+AGG | 0.616293 | 1.3:-49090273 | MS.gene23978:CDS |
| AGGTAAGGACTTGATGGCAA+TGG | 0.618555 | 1.3:-49088519 | MS.gene23978:CDS |
| GCGTCTAAGTACTTCAGCAG+TGG | 0.622569 | 1.3:+49087236 | None:intergenic |
| AGCAAAGGGCCTTTACAAAG+AGG | 0.624063 | 1.3:-49087319 | MS.gene23978:CDS |
| AAGTGCGTCATAAAACTGGA+AGG | 0.625420 | 1.3:-49088122 | MS.gene23978:CDS |
| AAACAGACAGAGCAAATGAA+AGG | 0.626924 | 1.3:+49088645 | None:intergenic |
| GTTTAGAATACGCTGAACAA+AGG | 0.629222 | 1.3:-49088172 | MS.gene23978:CDS |
| GAAATGTCTATACATTCTGT+GGG | 0.629408 | 1.3:-49089501 | MS.gene23978:CDS |
| TGTTAAAGGATGGTTACTGT+TGG | 0.631562 | 1.3:-49088090 | MS.gene23978:CDS |
| ATTTGAGAACGTAGATTAGG+GGG | 0.633365 | 1.3:+49088782 | None:intergenic |
| AATCTACGTTCTCAAATGGA+CGG | 0.634441 | 1.3:-49088776 | MS.gene23978:CDS |
| GCTTCTAGATGTCATGCACT+CGG | 0.643649 | 1.3:-49087535 | MS.gene23978:intron |
| CTTGATCACAAGTTGGACAC+CGG | 0.647590 | 1.3:-49090165 | MS.gene23978:CDS |
| TCCGGCAAACAACATAGAAG+AGG | 0.651451 | 1.3:-49088744 | MS.gene23978:CDS |
| ATCCGAATCTCTTGTCACCA+GGG | 0.653571 | 1.3:-49090229 | MS.gene23978:CDS |
| CATTTGAGAACGTAGATTAG+GGG | 0.654581 | 1.3:+49088781 | None:intergenic |
| CAGCAGTGGAGATTAGGCTG+CGG | 0.655573 | 1.3:+49087250 | None:intergenic |
| GAAATTCAAGAGACAATCTG+AGG | 0.658610 | 1.3:-49088264 | MS.gene23978:CDS |
| CAGACAGAGCAAATGAAAGG+TGG | 0.667903 | 1.3:+49088648 | None:intergenic |
| TGCGTCATAAAACTGGAAGG+TGG | 0.682113 | 1.3:-49088119 | MS.gene23978:CDS |
| AATGAAGTTCCTACGCTCAG+GGG | 0.692085 | 1.3:-49090286 | MS.gene23978:CDS |
| TGTACATCAGTCTTTCCCAG+TGG | 0.736555 | 1.3:-49087609 | MS.gene23978:CDS |
| TAAGACAAAGTAGCTTCACG+AGG | 0.755950 | 1.3:+49088908 | None:intergenic |
| AAGTGGCGTGTTAAACTACG+AGG | 0.762852 | 1.3:-49090109 | MS.gene23978:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATAGTTTTTTTTTTTT+TGG | + | chr1.3:49087567-49087586 | None:intergenic | 10.0% |
| !!! | ACAATAGTTTTTTTTTTTTT+GGG | + | chr1.3:49087566-49087585 | None:intergenic | 10.0% |
| !!! | TTTTTCTTTTCAAATTTAAC+AGG | - | chr1.3:49089966-49089985 | MS.gene23978:intron | 15.0% |
| !! | GTGACTATAACTATTAAAAT+TGG | - | chr1.3:49089539-49089558 | MS.gene23978:CDS | 20.0% |
| !!! | TAAAAAAGTGAAGTATTTTG+AGG | + | chr1.3:49087244-49087263 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCATAAACTATCT+TGG | + | chr1.3:49088105-49088124 | None:intergenic | 20.0% |
| ! | AAACTATCTTGGATATCTAA+TGG | + | chr1.3:49088094-49088113 | None:intergenic | 25.0% |
| ! | AAATATTCAATCAGTACAAG+TGG | + | chr1.3:49089494-49089513 | None:intergenic | 25.0% |
| ! | AAATTGGATAAATGTTTCAC+TGG | - | chr1.3:49089555-49089574 | MS.gene23978:CDS | 25.0% |
| ! | AATGTTGCAAAATTCTATCT+TGG | - | chr1.3:49088988-49089007 | MS.gene23978:CDS | 25.0% |
| ! | CATAATAACTTTGCAAGATT+GGG | + | chr1.3:49088269-49088288 | None:intergenic | 25.0% |
| ! | CATCTCAAGAAAAAGTTAAA+TGG | + | chr1.3:49089881-49089900 | None:intergenic | 25.0% |
| ! | GAGTAATTCTTCCAAATAAT+TGG | + | chr1.3:49088722-49088741 | None:intergenic | 25.0% |
| ! | TATCTATACCATTTGTGATA+GGG | - | chr1.3:49089632-49089651 | MS.gene23978:CDS | 25.0% |
| ! | TCACAAATGGTATAGATAAA+AGG | + | chr1.3:49089630-49089649 | None:intergenic | 25.0% |
| ! | TTATCTATACCATTTGTGAT+AGG | - | chr1.3:49089631-49089650 | MS.gene23978:CDS | 25.0% |
| ! | TTCAAGTGATAATAATCTGT+TGG | + | chr1.3:49089913-49089932 | None:intergenic | 25.0% |
| ! | TTGTAGCTACTATTCTAATT+TGG | - | chr1.3:49087602-49087621 | MS.gene23978:CDS | 25.0% |
| !! | TAAGTTATCATGTGGATTTT+TGG | - | chr1.3:49087262-49087281 | MS.gene23978:CDS | 25.0% |
| !!! | CACTTTTTTAAGTTATCATG+TGG | - | chr1.3:49087254-49087273 | MS.gene23978:CDS | 25.0% |
| !!! | CATTTAACTTTTTCTTGAGA+TGG | - | chr1.3:49089879-49089898 | MS.gene23978:intron | 25.0% |
| !!! | GTTGTTTTTCTTCTATATAG+TGG | - | chr1.3:49088502-49088521 | MS.gene23978:CDS | 25.0% |
| !!! | TTTTTCTTCTATATAGTGGA+GGG | - | chr1.3:49088506-49088525 | MS.gene23978:CDS | 25.0% |
| !!! | TTTTTTTTTGGGTACATAGA+CGG | + | chr1.3:49087555-49087574 | None:intergenic | 25.0% |
| AAAATATGCATGCAATCTAC+AGG | - | chr1.3:49087629-49087648 | MS.gene23978:CDS | 30.0% | |
| AAGAAACATTCCCAAAATCA+TGG | - | chr1.3:49087789-49087808 | MS.gene23978:intron | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | + | chr1.3:49087335-49087354 | None:intergenic | 30.0% | |
| AATAATTGGCTAAACTCGAT+AGG | + | chr1.3:49088708-49088727 | None:intergenic | 30.0% | |
| AATTACAAAGAGCTAGATCA+TGG | + | chr1.3:49088774-49088793 | None:intergenic | 30.0% | |
| AATTGTTGAGTGATAGAGAA+AGG | - | chr1.3:49088836-49088855 | MS.gene23978:CDS | 30.0% | |
| ACAGAATGTATAGACATTTC+CGG | + | chr1.3:49087819-49087838 | None:intergenic | 30.0% | |
| ATCGAGTTTAGCCAATTATT+TGG | - | chr1.3:49088708-49088727 | MS.gene23978:CDS | 30.0% | |
| ATTCAGCGTTTGTAGAATTA+AGG | - | chr1.3:49087309-49087328 | MS.gene23978:CDS | 30.0% | |
| CAAAGTTATTATGGACATAG+TGG | - | chr1.3:49088276-49088295 | MS.gene23978:CDS | 30.0% | |
| CCAATCTTGCAAAGTTATTA+TGG | - | chr1.3:49088267-49088286 | MS.gene23978:CDS | 30.0% | |
| CCATAATAACTTTGCAAGAT+TGG | + | chr1.3:49088270-49088289 | None:intergenic | 30.0% | |
| CTCTCTCAATAGAATTGAAT+GGG | - | chr1.3:49088633-49088652 | MS.gene23978:CDS | 30.0% | |
| GAAATGTCTATACATTCTGT+GGG | - | chr1.3:49087819-49087838 | MS.gene23978:intron | 30.0% | |
| GAATTTCTCGAAATCAGAAA+TGG | + | chr1.3:49089043-49089062 | None:intergenic | 30.0% | |
| GCTAAAATTCAAATTGCACT+TGG | - | chr1.3:49089360-49089379 | MS.gene23978:intron | 30.0% | |
| TAAGAATCAAAAAACCAGCA+AGG | + | chr1.3:49087911-49087930 | None:intergenic | 30.0% | |
| TAGCATATACGAAAACAGAT+TGG | - | chr1.3:49088177-49088196 | MS.gene23978:CDS | 30.0% | |
| TCTCTCTCAATAGAATTGAA+TGG | - | chr1.3:49088632-49088651 | MS.gene23978:CDS | 30.0% | |
| TGAGGGTAAAATATCATCAT+TGG | - | chr1.3:49090214-49090233 | MS.gene23978:CDS | 30.0% | |
| TTCTGCTTCTTCTATATTAC+CGG | + | chr1.3:49087177-49087196 | None:intergenic | 30.0% | |
| TTCTTGGAAGAAGCTATATA+AGG | - | chr1.3:49089455-49089474 | MS.gene23978:CDS | 30.0% | |
| TTTAGAAGCCATTAACAAAC+CGG | + | chr1.3:49088875-49088894 | None:intergenic | 30.0% | |
| TTTGTATGTCAAGGAATTTG+TGG | - | chr1.3:49087946-49087965 | MS.gene23978:CDS | 30.0% | |
| ! | ATCTGCTCAAAAACAGTTTT+TGG | - | chr1.3:49089263-49089282 | MS.gene23978:intron | 30.0% |
| ! | CAAATTCAGAGCAAAAGTTT+TGG | - | chr1.3:49089432-49089451 | MS.gene23978:intron | 30.0% |
| ! | GATTGAATATTTCTGCAGAA+TGG | - | chr1.3:49089502-49089521 | MS.gene23978:CDS | 30.0% |
| ! | GTTTTTCTTCTATATAGTGG+AGG | - | chr1.3:49088505-49088524 | MS.gene23978:CDS | 30.0% |
| !! | AGATTGGTTTCAATAACCAT+AGG | - | chr1.3:49088193-49088212 | MS.gene23978:CDS | 30.0% |
| !! | GATCTAGCTCTTTGTAATTA+CGG | - | chr1.3:49088775-49088794 | MS.gene23978:CDS | 30.0% |
| !! | TGGATTTTTGGATATGCATT+TGG | - | chr1.3:49087274-49087293 | MS.gene23978:CDS | 30.0% |
| !! | TTTTCTTCTATATAGTGGAG+GGG | - | chr1.3:49088507-49088526 | MS.gene23978:CDS | 30.0% |
| !!! | CTCTCTTTTTTTGTATGTCA+AGG | - | chr1.3:49087937-49087956 | MS.gene23978:CDS | 30.0% |
| AAACAGACAGAGCAAATGAA+AGG | + | chr1.3:49088678-49088697 | None:intergenic | 35.0% | |
| AATCTACGTTCTCAAATGGA+CGG | - | chr1.3:49088544-49088563 | MS.gene23978:CDS | 35.0% | |
| ACACTTTGACTAATGTCCTA+TGG | + | chr1.3:49088212-49088231 | None:intergenic | 35.0% | |
| ATAAATGGAATCTCGATCCA+GGG | - | chr1.3:49088452-49088471 | MS.gene23978:CDS | 35.0% | |
| ATCATCTGCACACTCAAAAT+TGG | - | chr1.3:49089017-49089036 | MS.gene23978:CDS | 35.0% | |
| ATCTATTATCAACGCTGCTT+TGG | - | chr1.3:49089293-49089312 | MS.gene23978:intron | 35.0% | |
| ATTTGAGAACGTAGATTAGG+GGG | + | chr1.3:49088541-49088560 | None:intergenic | 35.0% | |
| ATTTGGAAGAATTACTCCCT+GGG | - | chr1.3:49088725-49088744 | MS.gene23978:CDS | 35.0% | |
| CAGTAACCATCCTTTAACAT+TGG | + | chr1.3:49089229-49089248 | None:intergenic | 35.0% | |
| CATTTGAGAACGTAGATTAG+GGG | + | chr1.3:49088542-49088561 | None:intergenic | 35.0% | |
| CCATTTGAGAACGTAGATTA+GGG | + | chr1.3:49088543-49088562 | None:intergenic | 35.0% | |
| GAAATTCAAGAGACAATCTG+AGG | - | chr1.3:49089056-49089075 | MS.gene23978:CDS | 35.0% | |
| GGAAATGTCTATACATTCTG+TGG | - | chr1.3:49087818-49087837 | MS.gene23978:intron | 35.0% | |
| GGAAGATACGAGTATCAAAA+AGG | - | chr1.3:49087669-49087688 | MS.gene23978:CDS | 35.0% | |
| GTGCAAAACAAGGTAGATTA+CGG | + | chr1.3:49088001-49088020 | None:intergenic | 35.0% | |
| TATTTGGAAGAATTACTCCC+TGG | - | chr1.3:49088724-49088743 | MS.gene23978:CDS | 35.0% | |
| TCCATTTGAGAACGTAGATT+AGG | + | chr1.3:49088544-49088563 | None:intergenic | 35.0% | |
| TCTAAAAGCAAAATCGTTGC+AGG | - | chr1.3:49087863-49087882 | MS.gene23978:intron | 35.0% | |
| TGACATCTAGAAGCAGAATA+CGG | + | chr1.3:49089779-49089798 | None:intergenic | 35.0% | |
| TGCAAAACAAGGTAGATTAC+GGG | + | chr1.3:49088000-49088019 | None:intergenic | 35.0% | |
| TGGAAAACTTGATCACAAGT+TGG | - | chr1.3:49087148-49087167 | MS.gene23978:CDS | 35.0% | |
| TGTTAAAGGATGGTTACTGT+TGG | - | chr1.3:49089230-49089249 | MS.gene23978:intron | 35.0% | |
| TTAGAAGCCATTAACAAACC+GGG | + | chr1.3:49088874-49088893 | None:intergenic | 35.0% | |
| TTCATTTGCTCTGTCTGTTT+CGG | - | chr1.3:49088678-49088697 | MS.gene23978:CDS | 35.0% | |
| TTGTAGAATTAAGGCCTGTT+TGG | - | chr1.3:49087318-49087337 | MS.gene23978:CDS | 35.0% | |
| ! | AACTTGTGATCAAGTTTTCC+AGG | + | chr1.3:49087149-49087168 | None:intergenic | 35.0% |
| ! | GAAAGGTGGTCTAAAATTGA+AGG | + | chr1.3:49088661-49088680 | None:intergenic | 35.0% |
| ! | GTCTTTGAGGGAATAGATAT+AGG | - | chr1.3:49087714-49087733 | MS.gene23978:intron | 35.0% |
| ! | GTTTAGAATACGCTGAACAA+AGG | - | chr1.3:49089148-49089167 | MS.gene23978:intron | 35.0% |
| ! | TGAGATGGTATAGTACTGAA+GGG | + | chr1.3:49089128-49089147 | None:intergenic | 35.0% |
| !! | GAAAGGGCAATTTTGATCTT+AGG | + | chr1.3:49087750-49087769 | None:intergenic | 35.0% |
| !! | GATTTTGGGAATGTTTCTTG+CGG | + | chr1.3:49087788-49087807 | None:intergenic | 35.0% |
| !! | TAATCTTGGCCTTTTTCACA+AGG | - | chr1.3:49090190-49090209 | MS.gene23978:CDS | 35.0% |
| !! | TGCTCAAAAACAGTTTTTGG+AGG | - | chr1.3:49089266-49089285 | MS.gene23978:intron | 35.0% |
| !! | TTTGTGTGTGAGTTTTCAAG+TGG | - | chr1.3:49087518-49087537 | MS.gene23978:intron | 35.0% |
| !!! | AGAGCAAAAGTTTTGGTTCT+TGG | - | chr1.3:49089439-49089458 | MS.gene23978:CDS | 35.0% |
| !!! | CTTTTAGAGCCTCTTTGTAA+AGG | + | chr1.3:49090013-49090032 | None:intergenic | 35.0% |
| !!! | TAATCTACCTTGTTTTGCAC+TGG | - | chr1.3:49088001-49088020 | MS.gene23978:CDS | 35.0% |
| !!! | TGCAGTCAGAACTTTTTTGA+CGG | - | chr1.3:49090127-49090146 | MS.gene23978:CDS | 35.0% |
| AAGTGCGTCATAAAACTGGA+AGG | - | chr1.3:49089198-49089217 | MS.gene23978:intron | 40.0% | |
| ACAGATTGAATGCTTCTGCT+TGG | - | chr1.3:49090165-49090184 | MS.gene23978:CDS | 40.0% | |
| AGCTGCATTACATGTCTTTG+AGG | - | chr1.3:49087701-49087720 | MS.gene23978:intron | 40.0% | |
| AGGCGTAATGTATGAAGCAA+AGG | - | chr1.3:49089986-49090005 | MS.gene23978:intron | 40.0% | |
| AGGTAAACAGCTAGAACAGA+AGG | + | chr1.3:49089610-49089629 | None:intergenic | 40.0% | |
| AGGTTTAAAGGTAACCTTGC+TGG | - | chr1.3:49087894-49087913 | MS.gene23978:CDS | 40.0% | |
| AGTGATCATTCTTTCCTACC+TGG | - | chr1.3:49087128-49087147 | MS.gene23978:CDS | 40.0% | |
| CAGCGTATTCTAAACTGAGA+TGG | + | chr1.3:49089143-49089162 | None:intergenic | 40.0% | |
| CAGGCTCTTGAAAGGTTTAA+AGG | - | chr1.3:49087882-49087901 | MS.gene23978:CDS | 40.0% | |
| CATAAATGGAATCTCGATCC+AGG | - | chr1.3:49088451-49088470 | MS.gene23978:CDS | 40.0% | |
| CATGGAATCTTTCACTTCGA+TGG | + | chr1.3:49088756-49088775 | None:intergenic | 40.0% | |
| CATTCAGCACCAAAGTTATC+AGG | + | chr1.3:49088325-49088344 | None:intergenic | 40.0% | |
| CCCTAATCTACGTTCTCAAA+TGG | - | chr1.3:49088540-49088559 | MS.gene23978:CDS | 40.0% | |
| GAAGGTGGTTCCAATGTTAA+AGG | - | chr1.3:49089216-49089235 | MS.gene23978:intron | 40.0% | |
| GAATTATCTCTGCGAGAAAG+TGG | - | chr1.3:49087194-49087213 | MS.gene23978:CDS | 40.0% | |
| GCTGCATTACATGTCTTTGA+GGG | - | chr1.3:49087702-49087721 | MS.gene23978:intron | 40.0% | |
| GCTTCTGCTTGGTATAATCT+TGG | - | chr1.3:49090176-49090195 | MS.gene23978:CDS | 40.0% | |
| GGAACTTGGAAGTGGAAATA+TGG | - | chr1.3:49089672-49089691 | MS.gene23978:CDS | 40.0% | |
| GGCGTAATGTATGAAGCAAA+GGG | - | chr1.3:49089987-49090006 | MS.gene23978:intron | 40.0% | |
| GGCGTGTCTTTCAAAATCTA+AGG | - | chr1.3:49089745-49089764 | MS.gene23978:intron | 40.0% | |
| GTGGTTCCAATGTTAAAGGA+TGG | - | chr1.3:49089220-49089239 | MS.gene23978:intron | 40.0% | |
| TAAGACAAAGTAGCTTCACG+AGG | + | chr1.3:49088415-49088434 | None:intergenic | 40.0% | |
| TCATTTGCTCTGTCTGTTTC+GGG | - | chr1.3:49088679-49088698 | MS.gene23978:CDS | 40.0% | |
| TGCAAAGTGCGTCATAAAAC+TGG | - | chr1.3:49089194-49089213 | MS.gene23978:intron | 40.0% | |
| TTCCCAAAATCATGGTGAAC+CGG | - | chr1.3:49087797-49087816 | MS.gene23978:intron | 40.0% | |
| TTGAGCTACTTCCAGAATTG+TGG | - | chr1.3:49088374-49088393 | MS.gene23978:CDS | 40.0% | |
| TTGTAATTACGGAGCAGGTA+AGG | - | chr1.3:49088786-49088805 | MS.gene23978:CDS | 40.0% | |
| TTTGGATCAGACTGGGAAAT+GGG | - | chr1.3:49089311-49089330 | MS.gene23978:intron | 40.0% | |
| ! | CGAAGCTACAGAATGTTTTC+AGG | - | chr1.3:49090238-49090257 | MS.gene23978:CDS | 40.0% |
| ! | CTGAGATGGTATAGTACTGA+AGG | + | chr1.3:49089129-49089148 | None:intergenic | 40.0% |
| ! | GATGCTTTAGACATTGATCC+TGG | - | chr1.3:49090041-49090060 | MS.gene23978:intron | 40.0% |
| ! | GTCAAAAAAGTTCTGACTGC+AGG | + | chr1.3:49090128-49090147 | None:intergenic | 40.0% |
| ! | GTGAAGCTACTTTGTCTTAC+CGG | - | chr1.3:49088416-49088435 | MS.gene23978:CDS | 40.0% |
| ! | TGGTGCTGAATGTAAATTGC+AGG | - | chr1.3:49088333-49088352 | MS.gene23978:CDS | 40.0% |
| ! | TGTGATCAAGTTTTCCAGGT+AGG | + | chr1.3:49087145-49087164 | None:intergenic | 40.0% |
| ! | TTCCGGTTCACCATGATTTT+GGG | + | chr1.3:49087802-49087821 | None:intergenic | 40.0% |
| ! | TTGTGGTTTTTCGCTGCATA+TGG | - | chr1.3:49087963-49087982 | MS.gene23978:CDS | 40.0% |
| ! | TTTCCGGTTCACCATGATTT+TGG | + | chr1.3:49087803-49087822 | None:intergenic | 40.0% |
| !! | ATTTATGAAGAAGTGCTCGC+CGG | + | chr1.3:49088438-49088457 | None:intergenic | 40.0% |
| !! | GCGTTCTTTGTTTCTGGAAA+GGG | + | chr1.3:49087766-49087785 | None:intergenic | 40.0% |
| !! | TTTTGGGTACATAGACGGAA+TGG | + | chr1.3:49087550-49087569 | None:intergenic | 40.0% |
| !!! | CTTTTTTGACGGATGCTCTA+CGG | - | chr1.3:49090138-49090157 | MS.gene23978:CDS | 40.0% |
| AAGCTGAGTGTACGTCTCAA+TGG | + | chr1.3:49089400-49089419 | None:intergenic | 45.0% | |
| AAGGATGGTTACTGTTGGCA+CGG | - | chr1.3:49089235-49089254 | MS.gene23978:intron | 45.0% | |
| AAGTGGCGTGTTAAACTACG+AGG | - | chr1.3:49087211-49087230 | MS.gene23978:CDS | 45.0% | |
| AAGTTATCAGGCAAGCCTTC+AGG | + | chr1.3:49088313-49088332 | None:intergenic | 45.0% | |
| AATCGTTGCAGGCTCTTGAA+AGG | - | chr1.3:49087874-49087893 | MS.gene23978:CDS | 45.0% | |
| ACTTCCTGAAAAGAAGTCCC+TGG | + | chr1.3:49087111-49087130 | None:intergenic | 45.0% | |
| AGCAAAGGGCCTTTACAAAG+AGG | - | chr1.3:49090001-49090020 | MS.gene23978:intron | 45.0% | |
| AGTCTCACCAGTGCAAAACA+AGG | + | chr1.3:49088011-49088030 | None:intergenic | 45.0% | |
| ATCCGAATCTCTTGTCACCA+GGG | - | chr1.3:49087091-49087110 | MS.gene23978:CDS | 45.0% | |
| CAGACAGAGCAAATGAAAGG+TGG | + | chr1.3:49088675-49088694 | None:intergenic | 45.0% | |
| CTCGGTTACCCTATCACAAA+TGG | + | chr1.3:49089643-49089662 | None:intergenic | 45.0% | |
| CTTTGGATCAGACTGGGAAA+TGG | - | chr1.3:49089310-49089329 | MS.gene23978:intron | 45.0% | |
| GAAGGCTTGCCTGATAACTT+TGG | - | chr1.3:49088313-49088332 | MS.gene23978:CDS | 45.0% | |
| GCTCTTTGTAATTACGGAGC+AGG | - | chr1.3:49088781-49088800 | MS.gene23978:CDS | 45.0% | |
| GCTTCTAGATGTCATGCACT+CGG | - | chr1.3:49089785-49089804 | MS.gene23978:intron | 45.0% | |
| GGCGAGCACTTCTTCATAAA+TGG | - | chr1.3:49088437-49088456 | MS.gene23978:CDS | 45.0% | |
| GTACTTCAGCAGTGGAGATT+AGG | + | chr1.3:49090079-49090098 | None:intergenic | 45.0% | |
| GTGACAAGAGATTCGGATGT+AGG | + | chr1.3:49087089-49087108 | None:intergenic | 45.0% | |
| GTGGAATCTTCATTGCCTGA+AGG | - | chr1.3:49088295-49088314 | MS.gene23978:CDS | 45.0% | |
| GTTGAGTGATAGAGAAAGGC+CGG | - | chr1.3:49088840-49088859 | MS.gene23978:CDS | 45.0% | |
| TACTGAAGGGTCTCTCATTC+CGG | + | chr1.3:49089115-49089134 | None:intergenic | 45.0% | |
| TCAGCAAGCTTCCACAATTC+TGG | + | chr1.3:49088388-49088407 | None:intergenic | 45.0% | |
| TCCGGCAAACAACATAGAAG+AGG | - | chr1.3:49088576-49088595 | MS.gene23978:CDS | 45.0% | |
| TGAATCTTTGCTACAGTCCC+TGG | + | chr1.3:49088472-49088491 | None:intergenic | 45.0% | |
| TGCGTCATAAAACTGGAAGG+TGG | - | chr1.3:49089201-49089220 | MS.gene23978:intron | 45.0% | |
| TGTACATCAGTCTTTCCCAG+TGG | - | chr1.3:49089711-49089730 | MS.gene23978:intron | 45.0% | |
| ! | AGGTAAGGACTTGATGGCAA+TGG | - | chr1.3:49088801-49088820 | MS.gene23978:CDS | 45.0% |
| ! | CAGGAAGCTAGAGCATTACT+AGG | - | chr1.3:49087648-49087667 | MS.gene23978:CDS | 45.0% |
| ! | CTTGATCACAAGTTGGACAC+CGG | - | chr1.3:49087155-49087174 | MS.gene23978:CDS | 45.0% |
| ! | GCCTCTTCTATGTTGTTTGC+CGG | + | chr1.3:49088580-49088599 | None:intergenic | 45.0% |
| ! | TACCCTCAGCCTTGTGAAAA+AGG | + | chr1.3:49090202-49090221 | None:intergenic | 45.0% |
| ! | TTTGCACTGGTGAGACTGTT+TGG | - | chr1.3:49088014-49088033 | MS.gene23978:CDS | 45.0% |
| !! | AACCCTAGTCTTGCAGAAGA+AGG | - | chr1.3:49088907-49088926 | MS.gene23978:CDS | 45.0% |
| !! | ACACGTTCCCGGTTTGTTAA+TGG | - | chr1.3:49088864-49088883 | MS.gene23978:CDS | 45.0% |
| !! | ACCCTAGTCTTGCAGAAGAA+GGG | - | chr1.3:49088908-49088927 | MS.gene23978:CDS | 45.0% |
| !! | GGCGTTCTTTGTTTCTGGAA+AGG | + | chr1.3:49087767-49087786 | None:intergenic | 45.0% |
| AACAAACCGGGAACGTGTTC+CGG | + | chr1.3:49088862-49088881 | None:intergenic | 50.0% | |
| AATGGACGGCTCGTTTGTTC+CGG | - | chr1.3:49088558-49088577 | MS.gene23978:CDS | 50.0% | |
| ACCCCTTCTTCTGCAAGACT+AGG | + | chr1.3:49088913-49088932 | None:intergenic | 50.0% | |
| CACTTCGATGGATAGTCCCA+GGG | + | chr1.3:49088744-49088763 | None:intergenic | 50.0% | |
| CAGACTGGGAAATGGGATCA+GGG | - | chr1.3:49089318-49089337 | MS.gene23978:intron | 50.0% | |
| CATCCGAATCTCTTGTCACC+AGG | - | chr1.3:49087090-49087109 | MS.gene23978:CDS | 50.0% | |
| CCAAGTTCCTAGCACGATCT+CGG | + | chr1.3:49089661-49089680 | None:intergenic | 50.0% | |
| CCCCTTCTTCTGCAAGACTA+GGG | + | chr1.3:49088912-49088931 | None:intergenic | 50.0% | |
| CTTCAAGCCTTGGAAACTGC+TGG | - | chr1.3:49089081-49089100 | MS.gene23978:intron | 50.0% | |
| GCGTCTAAGTACTTCAGCAG+TGG | + | chr1.3:49090087-49090106 | None:intergenic | 50.0% | |
| GTCCCTGGTGACAAGAGATT+CGG | + | chr1.3:49087096-49087115 | None:intergenic | 50.0% | |
| TAGCTCAACTGCCTTGCTCA+CGG | + | chr1.3:49088362-49088381 | None:intergenic | 50.0% | |
| TCACTTCGATGGATAGTCCC+AGG | + | chr1.3:49088745-49088764 | None:intergenic | 50.0% | |
| TCAGACTGGGAAATGGGATC+AGG | - | chr1.3:49089317-49089336 | MS.gene23978:intron | 50.0% | |
| TCGTGCTAGGAACTTGGAAG+TGG | - | chr1.3:49089664-49089683 | MS.gene23978:CDS | 50.0% | |
| ! | AACGCTGCTTTGGATCAGAC+TGG | - | chr1.3:49089303-49089322 | MS.gene23978:intron | 50.0% |
| ! | ACGCTGCTTTGGATCAGACT+GGG | - | chr1.3:49089304-49089323 | MS.gene23978:intron | 50.0% |
| ! | AGAGCACTTGAGAGCTTGGA+CGG | - | chr1.3:49088946-49088965 | MS.gene23978:CDS | 50.0% |
| ! | ATCTGAGGCACTTCAAGCCT+TGG | - | chr1.3:49089071-49089090 | MS.gene23978:intron | 50.0% |
| ! | CTTGCGGCGTTCTTTGTTTC+TGG | + | chr1.3:49087772-49087791 | None:intergenic | 50.0% |
| ! | GTCACCAGGGACTTCTTTTC+AGG | - | chr1.3:49087104-49087123 | MS.gene23978:CDS | 50.0% |
| !! | CCCTAGTCTTGCAGAAGAAG+GGG | - | chr1.3:49088909-49088928 | MS.gene23978:CDS | 50.0% |
| !! | GGCCTTTTTCACAAGGCTGA+GGG | - | chr1.3:49090197-49090216 | MS.gene23978:CDS | 50.0% |
| !! | TCAGAGAGCACTTGAGAGCT+TGG | - | chr1.3:49088942-49088961 | MS.gene23978:CDS | 50.0% |
| !! | TGGCCTTTTTCACAAGGCTG+AGG | - | chr1.3:49090196-49090215 | MS.gene23978:CDS | 50.0% |
| AGGGTAACCGAGATCGTGCT+AGG | - | chr1.3:49089651-49089670 | MS.gene23978:CDS | 55.0% | |
| ATTGCAGGAGACCGTGAGCA+AGG | - | chr1.3:49088348-49088367 | MS.gene23978:CDS | 55.0% | |
| CAGCAGTGGAGATTAGGCTG+CGG | + | chr1.3:49090073-49090092 | None:intergenic | 55.0% | |
| CCGAGATCGTGCTAGGAACT+TGG | - | chr1.3:49089658-49089677 | MS.gene23978:CDS | 55.0% | |
| CGGAGCAGGTAAGGACTTGA+TGG | - | chr1.3:49088795-49088814 | MS.gene23978:CDS | 55.0% | |
| CGTTCTGCCAGCAGTTTCCA+AGG | + | chr1.3:49089091-49089110 | None:intergenic | 55.0% | |
| CTACGCTCAGGGGAGCAATT+GGG | - | chr1.3:49087044-49087063 | MS.gene23978:CDS | 55.0% | |
| GAAACTGCTGGCAGAACGAC+CGG | - | chr1.3:49089093-49089112 | MS.gene23978:intron | 55.0% | |
| TGGAGATTAGGCTGCGGACA+TGG | + | chr1.3:49090067-49090086 | None:intergenic | 55.0% | |
| TTCCCAGTGGCATGATGCAG+AGG | - | chr1.3:49089724-49089743 | MS.gene23978:intron | 55.0% | |
| ACGCCTCTGCATCATGCCAC+TGG | + | chr1.3:49089730-49089749 | None:intergenic | 60.0% | |
| ATTAGGCTGCGGACATGGCC+AGG | + | chr1.3:49090062-49090081 | None:intergenic | 60.0% | |
| CCAATTGCTCCCCTGAGCGT+AGG | + | chr1.3:49087046-49087065 | None:intergenic | 60.0% | |
| CCTACGCTCAGGGGAGCAAT+TGG | - | chr1.3:49087043-49087062 | MS.gene23978:CDS | 60.0% | |
| CGCCTCTGCATCATGCCACT+GGG | + | chr1.3:49089729-49089748 | None:intergenic | 60.0% | |
| GAAAGGCCGGAACACGTTCC+CGG | - | chr1.3:49088853-49088872 | MS.gene23978:CDS | 60.0% | |
| CGCTCAGGGGAGCAATTGGG+AGG | - | chr1.3:49087047-49087066 | MS.gene23978:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 49087035 | 49090307 | 49087035 | ID=MS.gene23978 |
| chr1.3 | mRNA | 49087035 | 49090307 | 49087035 | ID=MS.gene23978.t1;Parent=MS.gene23978 |
| chr1.3 | exon | 49090110 | 49090307 | 49090110 | ID=MS.gene23978.t1.exon1;Parent=MS.gene23978.t1 |
| chr1.3 | CDS | 49090110 | 49090307 | 49090110 | ID=cds.MS.gene23978.t1;Parent=MS.gene23978.t1 |
| chr1.3 | exon | 49089439 | 49089691 | 49089439 | ID=MS.gene23978.t1.exon2;Parent=MS.gene23978.t1 |
| chr1.3 | CDS | 49089439 | 49089691 | 49089439 | ID=cds.MS.gene23978.t1;Parent=MS.gene23978.t1 |
| chr1.3 | exon | 49087866 | 49089082 | 49087866 | ID=MS.gene23978.t1.exon3;Parent=MS.gene23978.t1 |
| chr1.3 | CDS | 49087866 | 49089082 | 49087866 | ID=cds.MS.gene23978.t1;Parent=MS.gene23978.t1 |
| chr1.3 | exon | 49087536 | 49087689 | 49087536 | ID=MS.gene23978.t1.exon4;Parent=MS.gene23978.t1 |
| chr1.3 | CDS | 49087536 | 49087689 | 49087536 | ID=cds.MS.gene23978.t1;Parent=MS.gene23978.t1 |
| chr1.3 | exon | 49087035 | 49087354 | 49087035 | ID=MS.gene23978.t1.exon5;Parent=MS.gene23978.t1 |
| chr1.3 | CDS | 49087035 | 49087354 | 49087035 | ID=cds.MS.gene23978.t1;Parent=MS.gene23978.t1 |
| Gene Sequence |
| Protein sequence |
