Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24332.t1 | XP_013466038.1 | 97.7 | 483 | 11 | 0 | 1 | 483 | 1 | 483 | 6.80E-275 | 956.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24332.t1 | Q9LLB0 | 64.3 | 499 | 165 | 4 | 5 | 503 | 6 | 491 | 3.5e-187 | 656.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24332.t1 | Q7X9B4 | 97.7 | 483 | 11 | 0 | 1 | 483 | 1 | 483 | 4.9e-275 | 956.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051837 | MS.gene24332 | 0.826639 | 2.43E-54 | -1.69E-46 |
| MS.gene052016 | MS.gene24332 | 0.827208 | 1.78E-54 | -1.69E-46 |
| MS.gene054585 | MS.gene24332 | 0.800982 | 1.12E-48 | -1.69E-46 |
| MS.gene054617 | MS.gene24332 | 0.849212 | 3.74E-60 | -1.69E-46 |
| MS.gene055531 | MS.gene24332 | 0.802735 | 4.87E-49 | -1.69E-46 |
| MS.gene057422 | MS.gene24332 | 0.817337 | 3.47E-52 | -1.69E-46 |
| MS.gene058404 | MS.gene24332 | 0.80765 | 4.56E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24332.t1 | MTR_1g021652 | 97.723 | 483 | 11 | 0 | 1 | 483 | 1 | 483 | 0.0 | 978 |
| MS.gene24332.t1 | MTR_3g111530 | 71.163 | 430 | 122 | 2 | 57 | 484 | 90 | 519 | 0.0 | 643 |
| MS.gene24332.t1 | MTR_1g034320 | 51.039 | 433 | 202 | 7 | 52 | 477 | 8 | 437 | 2.23e-154 | 449 |
| MS.gene24332.t1 | MTR_4g068550 | 48.073 | 441 | 223 | 4 | 48 | 484 | 2 | 440 | 1.63e-153 | 447 |
| MS.gene24332.t1 | MTR_1g034330 | 47.884 | 449 | 226 | 6 | 41 | 484 | 3 | 448 | 2.49e-149 | 436 |
| MS.gene24332.t1 | MTR_2g087890 | 40.371 | 431 | 251 | 4 | 56 | 483 | 21 | 448 | 1.75e-112 | 342 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24332.t1 | AT5G42650 | 58.400 | 500 | 204 | 3 | 4 | 503 | 2 | 497 | 0.0 | 593 |
| MS.gene24332.t1 | AT4G15440 | 38.440 | 359 | 217 | 4 | 137 | 492 | 4 | 361 | 1.17e-83 | 264 |
Find 111 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGACGACTACGTGATTTA+AGG | 0.223634 | 1.1:-2747879 | None:intergenic |
| TTCTTGAGCTGTTCATGTTT+TGG | 0.234640 | 1.1:-2747841 | None:intergenic |
| CCGATCCATTTCATCAAATT+AGG | 0.234831 | 1.1:-2748348 | None:intergenic |
| GAGAATCAACTTGCTGAAAA+TGG | 0.244874 | 1.1:+2747949 | MS.gene24332:CDS |
| CCACCGGTTCCATTACAATT+TGG | 0.257621 | 1.1:+2748513 | MS.gene24332:CDS |
| TACAATTTGGAAGAGCAAAA+AGG | 0.266309 | 1.1:+2748526 | MS.gene24332:CDS |
| CGTAAAATCCCTGGTGACTA+TGG | 0.271642 | 1.1:+2747520 | MS.gene24332:CDS |
| TCTGAAACTGAGGATCTTAT+AGG | 0.272458 | 1.1:-2747442 | None:intergenic |
| ACAGTTGGAGATTGAGATTC+TGG | 0.272740 | 1.1:-2748732 | None:intergenic |
| AAACATGTGCTTTGGTCTAA+TGG | 0.336037 | 1.1:+2748708 | MS.gene24332:CDS |
| AAGAAAGGTGAATTGTTGTT+AGG | 0.339578 | 1.1:+2748588 | MS.gene24332:CDS |
| AAAAGAAATCATAAAGTCTT+TGG | 0.340810 | 1.1:-2748203 | None:intergenic |
| ATAGTCTAAACGGTCTTTGT+AGG | 0.357496 | 1.1:-2747560 | None:intergenic |
| GTTAGGTCCAGTTCTGAAAC+TGG | 0.360881 | 1.1:+2748107 | MS.gene24332:CDS |
| AGTCCAAGTTCGGTGTCAAC+AGG | 0.376332 | 1.1:-2748045 | None:intergenic |
| TCTTTCTTAATGAGCCGAAA+TGG | 0.384153 | 1.1:-2748177 | None:intergenic |
| AACGTAGTTGTACTCCTTGA+TGG | 0.385691 | 1.1:+2747691 | MS.gene24332:CDS |
| TTTGCTCTTCCAAATTGTAA+TGG | 0.388470 | 1.1:-2748522 | None:intergenic |
| TCAAGGAGTACAACTACGTT+AGG | 0.399517 | 1.1:-2747688 | None:intergenic |
| TTCTTGAACCGTGCTTTGTT+CGG | 0.407853 | 1.1:+2748015 | MS.gene24332:CDS |
| CTATAACATGACTGAAACTC+TGG | 0.418932 | 1.1:-2747907 | None:intergenic |
| AACCCTGTTGACACCGAACT+TGG | 0.419339 | 1.1:+2748042 | MS.gene24332:CDS |
| CTCGAGGAAGCAGAGCGTTT+AGG | 0.429148 | 1.1:+2748246 | MS.gene24332:CDS |
| TTAGGATCTTTAGTAGCAAA+AGG | 0.430684 | 1.1:-2748618 | None:intergenic |
| AATTGTTGAAACATGTGCTT+TGG | 0.436664 | 1.1:+2748700 | MS.gene24332:CDS |
| TTCGATGCGTCGAAGAGGAC+GGG | 0.442058 | 1.1:-2747724 | None:intergenic |
| CTAATTTGATGAAATGGATC+GGG | 0.442169 | 1.1:+2748349 | MS.gene24332:CDS |
| CTTTCTTAATGAGCCGAAAT+GGG | 0.448393 | 1.1:-2748176 | None:intergenic |
| GATAGATTTGTTGGTGATGA+AGG | 0.449657 | 1.1:+2748672 | MS.gene24332:CDS |
| ATCGGAAGCTTGGTTGTTTG+TGG | 0.457864 | 1.1:-2747496 | None:intergenic |
| TGGACCGTCAAGTCCAAGTT+CGG | 0.457945 | 1.1:-2748055 | None:intergenic |
| TTTGTTGCAGATAGATTTGT+TGG | 0.462474 | 1.1:+2748663 | MS.gene24332:CDS |
| GGTTGTAGAAATAGTCTAAA+CGG | 0.463350 | 1.1:-2747570 | None:intergenic |
| TGCTGGCGGGGAGATTACTA+TGG | 0.465831 | 1.1:+2748431 | MS.gene24332:CDS |
| AAATTAGCGACGGAAATTAG+AGG | 0.465886 | 1.1:+2748396 | MS.gene24332:CDS |
| GGTAGGCCCAGTTTCAGAAC+TGG | 0.470888 | 1.1:-2748114 | None:intergenic |
| GGAGATTACTATGGCGGCCA+TGG | 0.473614 | 1.1:+2748440 | MS.gene24332:CDS |
| GACACCGAACTTGGACTTGA+CGG | 0.474937 | 1.1:+2748051 | MS.gene24332:CDS |
| CTTCCAAATTGTAATGGAAC+CGG | 0.475194 | 1.1:-2748516 | None:intergenic |
| GCATATTGTCTCACTACTAA+AGG | 0.477151 | 1.1:+2750454 | MS.gene24332:CDS |
| GCGTTTAGGTGTTTCAAAAG+AGG | 0.480545 | 1.1:+2748260 | MS.gene24332:CDS |
| CCACCAGTGAGTTCTGTAGA+AGG | 0.484397 | 1.1:-2747784 | None:intergenic |
| TCTTTGTAGGGTTGGATGAA+AGG | 0.484515 | 1.1:-2747547 | None:intergenic |
| TCGTGATAAGGTGGTGGAAG+AGG | 0.486006 | 1.1:-2747398 | None:intergenic |
| CTAAACGGTCTTTGTAGGGT+TGG | 0.489158 | 1.1:-2747555 | None:intergenic |
| GGTGGAGGAACGTCGTGATA+AGG | 0.495151 | 1.1:-2747410 | None:intergenic |
| GAATCTCAATCTCCAACTGT+TGG | 0.495729 | 1.1:+2748735 | MS.gene24332:CDS |
| CTTTGTAGGGTTGGATGAAA+GGG | 0.497717 | 1.1:-2747546 | None:intergenic |
| CCTAATTTGATGAAATGGAT+CGG | 0.498399 | 1.1:+2748348 | MS.gene24332:CDS |
| AATCTCAATCTCCAACTGTT+GGG | 0.502505 | 1.1:+2748736 | MS.gene24332:CDS |
| AGAGGAGCAATTAGATCTGC+TGG | 0.504448 | 1.1:+2748414 | MS.gene24332:CDS |
| TTCCGCACTAACGTTCCTCC+TGG | 0.506823 | 1.1:+2747646 | MS.gene24332:CDS |
| GGTTGTTTGTGGTTGAGAGA+TGG | 0.510021 | 1.1:-2747485 | None:intergenic |
| CATTGTTTATTCCCAACAGT+TGG | 0.511671 | 1.1:-2748747 | None:intergenic |
| TTAGACTATTTCTACAACCA+AGG | 0.515498 | 1.1:+2747574 | MS.gene24332:CDS |
| GAATATGCCGTTGATGAAAT+CGG | 0.515909 | 1.1:+2748464 | MS.gene24332:CDS |
| ACTGGGCCTACCGAAGTTTG+TGG | 0.518134 | 1.1:+2748125 | MS.gene24332:CDS |
| ACATCAACAGAAGTGTATAC+TGG | 0.520716 | 1.1:-2750481 | None:intergenic |
| TAGTCTAAACGGTCTTTGTA+GGG | 0.523147 | 1.1:-2747559 | None:intergenic |
| GTGATTGAAAATCATGAGAA+TGG | 0.524756 | 1.1:+2748555 | MS.gene24332:CDS |
| GGATCTTATAGGTGGAAGAA+AGG | 0.524920 | 1.1:-2747431 | None:intergenic |
| GAGCAATTAGATCTGCTGGC+GGG | 0.527113 | 1.1:+2748418 | MS.gene24332:CDS |
| TGAAGTATTCATCACGACCT+TGG | 0.527248 | 1.1:-2747591 | None:intergenic |
| GAGATGGAGACTTGGAAAGG+TGG | 0.530805 | 1.1:-2747469 | None:intergenic |
| GATAAAACCGATGTCTTCAC+AGG | 0.538925 | 1.1:+2747751 | MS.gene24332:CDS |
| AGCAATTAGATCTGCTGGCG+GGG | 0.539011 | 1.1:+2748419 | MS.gene24332:CDS |
| CAAGGAGTACAACTACGTTA+GGG | 0.540708 | 1.1:-2747687 | None:intergenic |
| AAAGGGATGCCATAGTCACC+AGG | 0.542937 | 1.1:-2747529 | None:intergenic |
| GTGGTTGAGAGATGGAGACT+TGG | 0.545394 | 1.1:-2747477 | None:intergenic |
| CGTGATAAGGTGGTGGAAGA+GGG | 0.548060 | 1.1:-2747397 | None:intergenic |
| CTTCCGATCCGTAAAATCCC+TGG | 0.555994 | 1.1:+2747511 | MS.gene24332:CDS |
| TGTTTGAGGAGATTAGGAGA+AGG | 0.557408 | 1.1:-2747364 | None:intergenic |
| CTTCGATGCGTCGAAGAGGA+CGG | 0.557973 | 1.1:-2747725 | None:intergenic |
| TCTTATAGGTGGAAGAAAGG+TGG | 0.561423 | 1.1:-2747428 | None:intergenic |
| AGAAGGAGTTGAAAGAGTAG+AGG | 0.564504 | 1.1:-2747347 | None:intergenic |
| CATCAACGGCATATTCTCCA+TGG | 0.564805 | 1.1:-2748457 | None:intergenic |
| TAGTGCGGAAGATGGTTGAC+TGG | 0.567027 | 1.1:-2747633 | None:intergenic |
| CGATCTTCGATGCGTCGAAG+AGG | 0.569780 | 1.1:-2747729 | None:intergenic |
| AGGAACGTTAGTGCGGAAGA+TGG | 0.576272 | 1.1:-2747641 | None:intergenic |
| TTTAGGTGTTTCAAAAGAGG+AGG | 0.581669 | 1.1:+2748263 | MS.gene24332:CDS |
| GGATCGGGCGCGGTGGAGTG+AGG | 0.582337 | 1.1:+2748364 | MS.gene24332:CDS |
| ATAGAATCTTCCACAAACTT+CGG | 0.583947 | 1.1:-2748135 | None:intergenic |
| TCGATGCGTCGAAGAGGACG+GGG | 0.588579 | 1.1:-2747723 | None:intergenic |
| TTCTGTTGATGTTCTCAACA+AGG | 0.592286 | 1.1:+2750492 | MS.gene24332:CDS |
| TATACCACCGATTTCATCAA+CGG | 0.592868 | 1.1:-2748471 | None:intergenic |
| CCAAATTGTAATGGAACCGG+TGG | 0.594525 | 1.1:-2748513 | None:intergenic |
| GTTGGGAATAAACAATGTGC+TGG | 0.598250 | 1.1:+2748753 | MS.gene24332:CDS |
| GGAACGTCGTGATAAGGTGG+TGG | 0.600776 | 1.1:-2747404 | None:intergenic |
| TATAGGTGGAAGAAAGGTGG+AGG | 0.604481 | 1.1:-2747425 | None:intergenic |
| TTCCTCGGGATTTGCTCTCG+AGG | 0.607265 | 1.1:+2748230 | MS.gene24332:CDS |
| TTAGTAGTGAGACAATATGC+AGG | 0.609906 | 1.1:-2750451 | None:intergenic |
| AATCTTCCACAAACTTCGGT+AGG | 0.620192 | 1.1:-2748131 | None:intergenic |
| GTCCAAGTTCGGTGTCAACA+GGG | 0.625604 | 1.1:-2748044 | None:intergenic |
| ATGAAATGGATCGGGCGCGG+TGG | 0.626352 | 1.1:+2748357 | MS.gene24332:CDS |
| TTAGGTCCAGTTCTGAAACT+GGG | 0.627548 | 1.1:+2748108 | MS.gene24332:CDS |
| GGAGGAACGTCGTGATAAGG+TGG | 0.627902 | 1.1:-2747407 | None:intergenic |
| GACCAGGAGGAACGTTAGTG+CGG | 0.628753 | 1.1:-2747648 | None:intergenic |
| GGTTAACACCGAACAAAGCA+CGG | 0.629486 | 1.1:-2748023 | None:intergenic |
| GAAACTGAGGATCTTATAGG+TGG | 0.630333 | 1.1:-2747439 | None:intergenic |
| TTGATGAAATGGATCGGGCG+CGG | 0.633244 | 1.1:+2748354 | MS.gene24332:CDS |
| ACACCTTCTACAGAACTCAC+TGG | 0.635223 | 1.1:+2747781 | MS.gene24332:CDS |
| GTTGCATACAAAATTAGCGA+CGG | 0.661214 | 1.1:+2748386 | MS.gene24332:CDS |
| TGGCGGGGAGATTACTATGG+CGG | 0.671730 | 1.1:+2748434 | MS.gene24332:CDS |
| TGAGAGATGGAGACTTGGAA+AGG | 0.672847 | 1.1:-2747472 | None:intergenic |
| GGAGCAATTAGATCTGCTGG+CGG | 0.676095 | 1.1:+2748417 | MS.gene24332:CDS |
| AAGGGATGCCATAGTCACCA+GGG | 0.700881 | 1.1:-2747528 | None:intergenic |
| TTCCTCGAGAGCAAATCCCG+AGG | 0.708927 | 1.1:-2748232 | None:intergenic |
| CCTTCTACAGAACTCACTGG+TGG | 0.709735 | 1.1:+2747784 | MS.gene24332:CDS |
| TATGCCGTTGATGAAATCGG+TGG | 0.719714 | 1.1:+2748467 | MS.gene24332:CDS |
| GTATGTACCTGTGAAGACAT+CGG | 0.723042 | 1.1:-2747758 | None:intergenic |
| TGAGCTATGAAAGGACCAGG+AGG | 0.748813 | 1.1:-2747661 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTATATATAGTCAA+GGG | - | chr1.1:2749829-2749848 | None:intergenic | 10.0% |
| !! | CTTTATATTATATATAGTCA+AGG | - | chr1.1:2749830-2749849 | None:intergenic | 15.0% |
| !! | TTATATTATATATAGTCAAG+GGG | - | chr1.1:2749828-2749847 | None:intergenic | 15.0% |
| !!! | AGATTTTCAAAATAAAATGA+TGG | + | chr1.1:2749240-2749259 | MS.gene24332:intron | 15.0% |
| !!! | AGTTTATAACTCATTAATTT+TGG | + | chr1.1:2749635-2749654 | MS.gene24332:intron | 15.0% |
| !!! | GATTTTCAAAATAAAATGAT+GGG | + | chr1.1:2749241-2749260 | MS.gene24332:intron | 15.0% |
| !! | AAAAGAAATCATAAAGTCTT+TGG | - | chr1.1:2748206-2748225 | None:intergenic | 20.0% |
| !! | AAAATTGCGTAATAAAATCA+TGG | - | chr1.1:2749752-2749771 | None:intergenic | 20.0% |
| !! | AACCAATTGTACTATATATA+TGG | + | chr1.1:2749213-2749232 | MS.gene24332:intron | 20.0% |
| !! | TATATTATATATAGTCAAGG+GGG | - | chr1.1:2749827-2749846 | None:intergenic | 20.0% |
| !!! | GATATTTAAGTGTAGTTTTT+TGG | + | chr1.1:2749024-2749043 | MS.gene24332:intron | 20.0% |
| !!! | TTTTTCCTAATTTGATGAAA+TGG | + | chr1.1:2748343-2748362 | MS.gene24332:CDS | 20.0% |
| ! | AAAAAAATGAAGCAATCAAG+AGG | - | chr1.1:2750535-2750554 | None:intergenic | 25.0% |
| ! | AAAAAATGAAGCAATCAAGA+GGG | - | chr1.1:2750534-2750553 | None:intergenic | 25.0% |
| ! | AAATGCAAAACCAAATTACA+TGG | - | chr1.1:2750198-2750217 | None:intergenic | 25.0% |
| ! | AATAGCCAATCAAAAGATTT+AGG | - | chr1.1:2749380-2749399 | None:intergenic | 25.0% |
| ! | AATGAAAACTAGCCAAATTA+TGG | - | chr1.1:2750121-2750140 | None:intergenic | 25.0% |
| ! | ATAGAAAAATAGATTTGCCA+AGG | + | chr1.1:2750347-2750366 | MS.gene24332:intron | 25.0% |
| ! | ATTGTCTAAATGTATGAATG+AGG | + | chr1.1:2749179-2749198 | MS.gene24332:intron | 25.0% |
| ! | CTATGTTTCCAATATTTCAA+CGG | + | chr1.1:2749891-2749910 | MS.gene24332:intron | 25.0% |
| ! | CTCCATATATATAGTACAAT+TGG | - | chr1.1:2749218-2749237 | None:intergenic | 25.0% |
| ! | GATCTTTAATTAGTAGTTGT+TGG | + | chr1.1:2749082-2749101 | MS.gene24332:intron | 25.0% |
| ! | GTAATAGCTAAATATAGATG+TGG | + | chr1.1:2750299-2750318 | MS.gene24332:intron | 25.0% |
| ! | TAAACTAATTCCTAACTGAA+TGG | - | chr1.1:2750572-2750591 | None:intergenic | 25.0% |
| ! | TTCATACAATCTTTACTTAG+TGG | + | chr1.1:2750068-2750087 | MS.gene24332:intron | 25.0% |
| !! | CTTTTCCTAAATCTTTTGAT+TGG | + | chr1.1:2749372-2749391 | MS.gene24332:intron | 25.0% |
| !!! | AAATCATGAGAATGGTTTTT+TGG | + | chr1.1:2748563-2748582 | MS.gene24332:CDS | 25.0% |
| !!! | AAATGGGTTTTATTTCAGTT+AGG | + | chr1.1:2748090-2748109 | MS.gene24332:CDS | 25.0% |
| !!! | AATGGTTTTTTGGTTAAGAA+AGG | + | chr1.1:2748573-2748592 | MS.gene24332:CDS | 25.0% |
| !!! | ATTTGTTTTACCATTCAGTT+AGG | + | chr1.1:2750559-2750578 | MS.gene24332:intron | 25.0% |
| !!! | TAGAGAGTTTTTTAATGCTT+TGG | + | chr1.1:2747927-2747946 | MS.gene24332:CDS | 25.0% |
| AAAAATAGATTTGCCAAGGT+TGG | + | chr1.1:2750351-2750370 | MS.gene24332:intron | 30.0% | |
| AATTGTTGAAACATGTGCTT+TGG | + | chr1.1:2748700-2748719 | MS.gene24332:CDS | 30.0% | |
| ACAATTTGGAAGAGCAAAAA+GGG | + | chr1.1:2748527-2748546 | MS.gene24332:CDS | 30.0% | |
| ACTCACAGATGTTAAAATCT+CGG | + | chr1.1:2750395-2750414 | MS.gene24332:intron | 30.0% | |
| ATAGAATCTTCCACAAACTT+CGG | - | chr1.1:2748138-2748157 | None:intergenic | 30.0% | |
| ATGTTAGTGTGTATTACTCA+AGG | + | chr1.1:2750230-2750249 | MS.gene24332:intron | 30.0% | |
| ATTTCCAACTTGAATCTCAA+AGG | - | chr1.1:2748841-2748860 | None:intergenic | 30.0% | |
| CAAAAGTCTTGAAATCAATG+TGG | - | chr1.1:2748790-2748809 | None:intergenic | 30.0% | |
| CACACAATAAATGTCAAAGT+TGG | - | chr1.1:2749935-2749954 | None:intergenic | 30.0% | |
| CATAAAGGACAAATGCAAAA+TGG | + | chr1.1:2749788-2749807 | MS.gene24332:intron | 30.0% | |
| CCTAATTTGATGAAATGGAT+CGG | + | chr1.1:2748348-2748367 | MS.gene24332:CDS | 30.0% | |
| CTAATTTGATGAAATGGATC+GGG | + | chr1.1:2748349-2748368 | MS.gene24332:CDS | 30.0% | |
| CTACATAATTCCCTTTATCA+AGG | - | chr1.1:2749144-2749163 | None:intergenic | 30.0% | |
| CTACATTCTATCATATGCAT+AGG | - | chr1.1:2750658-2750677 | None:intergenic | 30.0% | |
| CTTTAATTAGTAGTTGTTGG+TGG | + | chr1.1:2749085-2749104 | MS.gene24332:intron | 30.0% | |
| GACTTAACTGAACTATTGAA+AGG | - | chr1.1:2749495-2749514 | None:intergenic | 30.0% | |
| GCAGAATAGTTTCCATAATT+TGG | + | chr1.1:2750106-2750125 | MS.gene24332:intron | 30.0% | |
| GCATTACAGATTACAGTTTA+TGG | - | chr1.1:2749582-2749601 | None:intergenic | 30.0% | |
| GGTTGTAGAAATAGTCTAAA+CGG | - | chr1.1:2747573-2747592 | None:intergenic | 30.0% | |
| GTAATACACACTAACATTGA+AGG | - | chr1.1:2750227-2750246 | None:intergenic | 30.0% | |
| GTGATTGAAAATCATGAGAA+TGG | + | chr1.1:2748555-2748574 | MS.gene24332:CDS | 30.0% | |
| TACAATTTGGAAGAGCAAAA+AGG | + | chr1.1:2748526-2748545 | MS.gene24332:CDS | 30.0% | |
| TACATTTAGACAATCGATAG+TGG | - | chr1.1:2749173-2749192 | None:intergenic | 30.0% | |
| TATTGTTGTACTTGTACACT+TGG | + | chr1.1:2749055-2749074 | MS.gene24332:intron | 30.0% | |
| TCCAAAAATGGTTCAGAAAT+GGG | + | chr1.1:2748074-2748093 | MS.gene24332:CDS | 30.0% | |
| TCTGCTCTATCAAAAATCTT+AGG | - | chr1.1:2748639-2748658 | None:intergenic | 30.0% | |
| TTAACTGAACTATTGAAAGG+TGG | - | chr1.1:2749492-2749511 | None:intergenic | 30.0% | |
| TTAGGATCTTTAGTAGCAAA+AGG | - | chr1.1:2748621-2748640 | None:intergenic | 30.0% | |
| TTGTGACACTAATGTCATAA+AGG | + | chr1.1:2749773-2749792 | MS.gene24332:intron | 30.0% | |
| TTTGCTCTTCCAAATTGTAA+TGG | - | chr1.1:2748525-2748544 | None:intergenic | 30.0% | |
| TTTGTTGCAGATAGATTTGT+TGG | + | chr1.1:2748663-2748682 | MS.gene24332:CDS | 30.0% | |
| ! | AAGAAAGGTGAATTGTTGTT+AGG | + | chr1.1:2748588-2748607 | MS.gene24332:CDS | 30.0% |
| ! | AGACTATTGTTTGAGATTGT+TGG | - | chr1.1:2749873-2749892 | None:intergenic | 30.0% |
| ! | AGAGGATTTTGCTCTTATAT+CGG | - | chr1.1:2749722-2749741 | None:intergenic | 30.0% |
| ! | ATAATTTTCGTCTCCCATTT+CGG | + | chr1.1:2748163-2748182 | MS.gene24332:CDS | 30.0% |
| ! | ATATTTTCAACAACCAACCT+TGG | - | chr1.1:2750367-2750386 | None:intergenic | 30.0% |
| ! | ATTTCATTTTGCTTCACAAG+AGG | - | chr1.1:2750049-2750068 | None:intergenic | 30.0% |
| ! | TAAGATTTTTGATAGAGCAG+AGG | + | chr1.1:2748638-2748657 | MS.gene24332:CDS | 30.0% |
| ! | TACGTGCTAGCTTAAATAAA+TGG | - | chr1.1:2749342-2749361 | None:intergenic | 30.0% |
| ! | TGATTTCTTTTATGCTTCCT+CGG | + | chr1.1:2748215-2748234 | MS.gene24332:CDS | 30.0% |
| !! | TGGTTGTTGAACTTTTTCTT+AGG | + | chr1.1:2748808-2748827 | MS.gene24332:intron | 30.0% |
| !! | TTAGACTATTTCTACAACCA+AGG | + | chr1.1:2747574-2747593 | MS.gene24332:CDS | 30.0% |
| !!! | ATTTGGCTAGTTTTCATTGA+AGG | + | chr1.1:2750123-2750142 | MS.gene24332:intron | 30.0% |
| !!! | CACATTGATTTCAAGACTTT+TGG | + | chr1.1:2748788-2748807 | MS.gene24332:intron | 30.0% |
| AAACATGTGCTTTGGTCTAA+TGG | + | chr1.1:2748708-2748727 | MS.gene24332:CDS | 35.0% | |
| AAATTAGCGACGGAAATTAG+AGG | + | chr1.1:2748396-2748415 | MS.gene24332:CDS | 35.0% | |
| AATCTCAATCTCCAACTGTT+GGG | + | chr1.1:2748736-2748755 | MS.gene24332:CDS | 35.0% | |
| AGCTAATCTGGATAAATTGC+TGG | + | chr1.1:2750268-2750287 | MS.gene24332:intron | 35.0% | |
| ATAGTCTAAACGGTCTTTGT+AGG | - | chr1.1:2747563-2747582 | None:intergenic | 35.0% | |
| ATTCACCTTCTTGTAATGTG+TGG | + | chr1.1:2749661-2749680 | MS.gene24332:intron | 35.0% | |
| CATAAACCAAATAACCTTCC+TGG | - | chr1.1:2749451-2749470 | None:intergenic | 35.0% | |
| CATAAATCGGCCATGTAATT+TGG | + | chr1.1:2750185-2750204 | MS.gene24332:intron | 35.0% | |
| CATACAGTATGCTTCTAGTA+GGG | + | chr1.1:2750324-2750343 | MS.gene24332:intron | 35.0% | |
| CATTGTTTATTCCCAACAGT+TGG | - | chr1.1:2748750-2748769 | None:intergenic | 35.0% | |
| CCGATCCATTTCATCAAATT+AGG | - | chr1.1:2748351-2748370 | None:intergenic | 35.0% | |
| CTATAACATGACTGAAACTC+TGG | - | chr1.1:2747910-2747929 | None:intergenic | 35.0% | |
| CTTTCTTAATGAGCCGAAAT+GGG | - | chr1.1:2748179-2748198 | None:intergenic | 35.0% | |
| GCATATTGTCTCACTACTAA+AGG | + | chr1.1:2750454-2750473 | MS.gene24332:CDS | 35.0% | |
| GTCCAAAAATGGTTCAGAAA+TGG | + | chr1.1:2748073-2748092 | MS.gene24332:CDS | 35.0% | |
| GTTGCATACAAAATTAGCGA+CGG | + | chr1.1:2748386-2748405 | MS.gene24332:CDS | 35.0% | |
| TAAAATCATGGTGCAACAAG+AGG | - | chr1.1:2749740-2749759 | None:intergenic | 35.0% | |
| TAGTCTAAACGGTCTTTGTA+GGG | - | chr1.1:2747562-2747581 | None:intergenic | 35.0% | |
| TATGGAAACTATTCTGCTCT+TGG | - | chr1.1:2750103-2750122 | None:intergenic | 35.0% | |
| TCTTTCTTAATGAGCCGAAA+TGG | - | chr1.1:2748180-2748199 | None:intergenic | 35.0% | |
| TTAGTAGTGAGACAATATGC+AGG | - | chr1.1:2750454-2750473 | None:intergenic | 35.0% | |
| TTCAGTTAAGTCCAAACAGT+GGG | + | chr1.1:2749503-2749522 | MS.gene24332:intron | 35.0% | |
| TTCTGTTGATGTTCTCAACA+AGG | + | chr1.1:2750492-2750511 | MS.gene24332:CDS | 35.0% | |
| TTGATGTTCTCAACAAGGTT+TGG | + | chr1.1:2750497-2750516 | MS.gene24332:intron | 35.0% | |
| TTGTACTTGTACACTTGGAT+TGG | + | chr1.1:2749060-2749079 | MS.gene24332:intron | 35.0% | |
| TTTAGGTGTTTCAAAAGAGG+AGG | + | chr1.1:2748263-2748282 | MS.gene24332:CDS | 35.0% | |
| TTTGCAACTAGTAGCTAATC+TGG | + | chr1.1:2750256-2750275 | MS.gene24332:intron | 35.0% | |
| ! | ACATCAACAGAAGTGTATAC+TGG | - | chr1.1:2750484-2750503 | None:intergenic | 35.0% |
| ! | ACCCATTTCTGAACCATTTT+TGG | - | chr1.1:2748078-2748097 | None:intergenic | 35.0% |
| ! | AGATGGTTGACTGGTATTTT+TGG | - | chr1.1:2747627-2747646 | None:intergenic | 35.0% |
| ! | CAAGTTGGAAATTCACCTTT+AGG | + | chr1.1:2748849-2748868 | MS.gene24332:intron | 35.0% |
| ! | CTACTAGAAGCATACTGTAT+GGG | - | chr1.1:2750325-2750344 | None:intergenic | 35.0% |
| ! | CTTCCAAATTGTAATGGAAC+CGG | - | chr1.1:2748519-2748538 | None:intergenic | 35.0% |
| ! | GAATATGCCGTTGATGAAAT+CGG | + | chr1.1:2748464-2748483 | MS.gene24332:CDS | 35.0% |
| ! | GATTTCTTTTATGCTTCCTC+GGG | + | chr1.1:2748216-2748235 | MS.gene24332:CDS | 35.0% |
| ! | TCTGAAACTGAGGATCTTAT+AGG | - | chr1.1:2747445-2747464 | None:intergenic | 35.0% |
| ! | TTCTTGAGCTGTTCATGTTT+TGG | - | chr1.1:2747844-2747863 | None:intergenic | 35.0% |
| ! | TTGAGTTGCCGTTGAAATAT+TGG | - | chr1.1:2749902-2749921 | None:intergenic | 35.0% |
| ! | TTTTAACATCTGTGAGTGCT+TGG | - | chr1.1:2750392-2750411 | None:intergenic | 35.0% |
| !! | GAGAATCAACTTGCTGAAAA+TGG | + | chr1.1:2747949-2747968 | MS.gene24332:CDS | 35.0% |
| !! | GATAGATTTGTTGGTGATGA+AGG | + | chr1.1:2748672-2748691 | MS.gene24332:CDS | 35.0% |
| !! | GATTCCTTTGAGATTCAAGT+TGG | + | chr1.1:2748834-2748853 | MS.gene24332:intron | 35.0% |
| !! | TATACCACCGATTTCATCAA+CGG | - | chr1.1:2748474-2748493 | None:intergenic | 35.0% |
| !! | TTGAGATTGTTGGTAGCATT+GGG | - | chr1.1:2749863-2749882 | None:intergenic | 35.0% |
| !! | TTTGAGATTGTTGGTAGCAT+TGG | - | chr1.1:2749864-2749883 | None:intergenic | 35.0% |
| !!! | ACGTGTTTTAATTCGTTTGG+CGG | + | chr1.1:2748309-2748328 | MS.gene24332:CDS | 35.0% |
| !!! | GCAACGTGTTTTAATTCGTT+TGG | + | chr1.1:2748306-2748325 | MS.gene24332:CDS | 35.0% |
| !!! | TTAGGGTTTTGAGCTATGAA+AGG | - | chr1.1:2747673-2747692 | None:intergenic | 35.0% |
| !!! | TTTTGGTGTTTGAGGAGATT+AGG | - | chr1.1:2747373-2747392 | None:intergenic | 35.0% |
| AACGTAGTTGTACTCCTTGA+TGG | + | chr1.1:2747691-2747710 | MS.gene24332:CDS | 40.0% | |
| AAGCAAACACACAACTAGGA+TGG | + | chr1.1:2749989-2750008 | MS.gene24332:intron | 40.0% | |
| AATCTTCCACAAACTTCGGT+AGG | - | chr1.1:2748134-2748153 | None:intergenic | 40.0% | |
| ACAGTTGGAGATTGAGATTC+TGG | - | chr1.1:2748735-2748754 | None:intergenic | 40.0% | |
| ACCAAAGCAAACACACAACT+AGG | + | chr1.1:2749985-2750004 | MS.gene24332:intron | 40.0% | |
| AGAAGGAGTTGAAAGAGTAG+AGG | - | chr1.1:2747350-2747369 | None:intergenic | 40.0% | |
| ATCATGCACTATAGGAGTAG+TGG | + | chr1.1:2749115-2749134 | MS.gene24332:intron | 40.0% | |
| CATGACGACTACGTGATTTA+AGG | - | chr1.1:2747882-2747901 | None:intergenic | 40.0% | |
| CCATACAGTATGCTTCTAGT+AGG | + | chr1.1:2750323-2750342 | MS.gene24332:intron | 40.0% | |
| CTTTGTAGGGTTGGATGAAA+GGG | - | chr1.1:2747549-2747568 | None:intergenic | 40.0% | |
| GAAACTGAGGATCTTATAGG+TGG | - | chr1.1:2747442-2747461 | None:intergenic | 40.0% | |
| GAAGCTTGATCTCTTTAGTG+AGG | - | chr1.1:2748892-2748911 | None:intergenic | 40.0% | |
| GAATCTCAATCTCCAACTGT+TGG | + | chr1.1:2748735-2748754 | MS.gene24332:CDS | 40.0% | |
| GATAAAACCGATGTCTTCAC+AGG | + | chr1.1:2747751-2747770 | MS.gene24332:CDS | 40.0% | |
| GCGTTTAGGTGTTTCAAAAG+AGG | + | chr1.1:2748260-2748279 | MS.gene24332:CDS | 40.0% | |
| GCTGATCAATCATGCACTAT+AGG | + | chr1.1:2749107-2749126 | MS.gene24332:intron | 40.0% | |
| GGATCTTATAGGTGGAAGAA+AGG | - | chr1.1:2747434-2747453 | None:intergenic | 40.0% | |
| GTATGTACCTGTGAAGACAT+CGG | - | chr1.1:2747761-2747780 | None:intergenic | 40.0% | |
| GTTCAGTTAAGTCCAAACAG+TGG | + | chr1.1:2749502-2749521 | MS.gene24332:intron | 40.0% | |
| GTTGGGAATAAACAATGTGC+TGG | + | chr1.1:2748753-2748772 | MS.gene24332:CDS | 40.0% | |
| TAGTTGTGTGTTTGCTTTGG+TGG | - | chr1.1:2749986-2750005 | None:intergenic | 40.0% | |
| TCCTAGTTGTGTGTTTGCTT+TGG | - | chr1.1:2749989-2750008 | None:intergenic | 40.0% | |
| TCTTATAGGTGGAAGAAAGG+TGG | - | chr1.1:2747431-2747450 | None:intergenic | 40.0% | |
| TCTTTGTAGGGTTGGATGAA+AGG | - | chr1.1:2747550-2747569 | None:intergenic | 40.0% | |
| TGATCTCTTTAGTGAGGTGA+GGG | - | chr1.1:2748886-2748905 | None:intergenic | 40.0% | |
| TGTTTGAGGAGATTAGGAGA+AGG | - | chr1.1:2747367-2747386 | None:intergenic | 40.0% | |
| TTGATCTCTTTAGTGAGGTG+AGG | - | chr1.1:2748887-2748906 | None:intergenic | 40.0% | |
| ! | CAAGGAGTACAACTACGTTA+GGG | - | chr1.1:2747690-2747709 | None:intergenic | 40.0% |
| ! | CATAGTCACCAGGGATTTTA+CGG | - | chr1.1:2747522-2747541 | None:intergenic | 40.0% |
| ! | CCTACTAGAAGCATACTGTA+TGG | - | chr1.1:2750326-2750345 | None:intergenic | 40.0% |
| ! | GGTGGATTCGAAATTTCAGT+CGG | - | chr1.1:2749968-2749987 | None:intergenic | 40.0% |
| ! | TCAAGGAGTACAACTACGTT+AGG | - | chr1.1:2747691-2747710 | None:intergenic | 40.0% |
| ! | TGAAGTATTCATCACGACCT+TGG | - | chr1.1:2747594-2747613 | None:intergenic | 40.0% |
| ! | TTCTTGAACCGTGCTTTGTT+CGG | + | chr1.1:2748015-2748034 | MS.gene24332:CDS | 40.0% |
| ! | TTTTGAGCTATGAAAGGACC+AGG | - | chr1.1:2747667-2747686 | None:intergenic | 40.0% |
| !! | AGCTTTTCGTATTGATCCAC+CGG | + | chr1.1:2748497-2748516 | MS.gene24332:CDS | 40.0% |
| !! | GCATTCGAGCTAGTCTTATA+TGG | + | chr1.1:2750621-2750640 | MS.gene24332:intron | 40.0% |
| !! | TTAGACAATCGATAGTGGAG+TGG | - | chr1.1:2749168-2749187 | None:intergenic | 40.0% |
| !! | TTAGGTCCAGTTCTGAAACT+GGG | + | chr1.1:2748108-2748127 | MS.gene24332:CDS | 40.0% |
| !!! | AGGGTCTTTTTTGGTGTTTG+AGG | - | chr1.1:2747381-2747400 | None:intergenic | 40.0% |
| !!! | AGGTGGTTTTTCTGAAACTG+AGG | - | chr1.1:2747455-2747474 | None:intergenic | 40.0% |
| !!! | CGTGTTTTAATTCGTTTGGC+GGG | + | chr1.1:2748310-2748329 | MS.gene24332:CDS | 40.0% |
| !!! | GAGCTGTTCATGTTTTGGTT+CGG | - | chr1.1:2747839-2747858 | None:intergenic | 40.0% |
| !!! | TGTTCATGTTTTGGTTCGGA+GGG | - | chr1.1:2747835-2747854 | None:intergenic | 40.0% |
| ACACCTTCTACAGAACTCAC+TGG | + | chr1.1:2747781-2747800 | MS.gene24332:CDS | 45.0% | |
| AGAGGAGCAATTAGATCTGC+TGG | + | chr1.1:2748414-2748433 | MS.gene24332:CDS | 45.0% | |
| AGGGTAATAGCAGGACCTAA+AGG | - | chr1.1:2748867-2748886 | None:intergenic | 45.0% | |
| ATAGACTGACACCCACTGTT+TGG | - | chr1.1:2749517-2749536 | None:intergenic | 45.0% | |
| ATCGGAAGCTTGGTTGTTTG+TGG | - | chr1.1:2747499-2747518 | None:intergenic | 45.0% | |
| ATGCACTATAGGAGTAGTGG+TGG | + | chr1.1:2749118-2749137 | MS.gene24332:intron | 45.0% | |
| CACTGTACGAATCAACGTCA+CGG | - | chr1.1:2749416-2749435 | None:intergenic | 45.0% | |
| CATCAACGGCATATTCTCCA+TGG | - | chr1.1:2748460-2748479 | None:intergenic | 45.0% | |
| CGTAAAATCCCTGGTGACTA+TGG | + | chr1.1:2747520-2747539 | MS.gene24332:CDS | 45.0% | |
| CTAAACGGTCTTTGTAGGGT+TGG | - | chr1.1:2747558-2747577 | None:intergenic | 45.0% | |
| CTCTGCCACACATTACAAGA+AGG | - | chr1.1:2749669-2749688 | None:intergenic | 45.0% | |
| GGTTAACACCGAACAAAGCA+CGG | - | chr1.1:2748026-2748045 | None:intergenic | 45.0% | |
| GGTTGTTTGTGGTTGAGAGA+TGG | - | chr1.1:2747488-2747507 | None:intergenic | 45.0% | |
| TATAGGTGGAAGAAAGGTGG+AGG | - | chr1.1:2747428-2747447 | None:intergenic | 45.0% | |
| TCTTGTAATGTGTGGCAGAG+TGG | + | chr1.1:2749669-2749688 | MS.gene24332:intron | 45.0% | |
| TGAGAGATGGAGACTTGGAA+AGG | - | chr1.1:2747475-2747494 | None:intergenic | 45.0% | |
| TGGAAGAGCAAAAAGGGACA+TGG | + | chr1.1:2748533-2748552 | MS.gene24332:CDS | 45.0% | |
| TGGACTTGACGGTCCAAAAA+TGG | + | chr1.1:2748062-2748081 | MS.gene24332:CDS | 45.0% | |
| TGGGAATTGCATGATACACG+TGG | + | chr1.1:2749260-2749279 | MS.gene24332:intron | 45.0% | |
| ! | AGTAGTGGTGGCCTTGATAA+AGG | + | chr1.1:2749130-2749149 | MS.gene24332:intron | 45.0% |
| ! | CCAAATTGTAATGGAACCGG+TGG | - | chr1.1:2748516-2748535 | None:intergenic | 45.0% |
| ! | GATTTTACGGATCGGAAGCT+TGG | - | chr1.1:2747509-2747528 | None:intergenic | 45.0% |
| ! | GTAGTGGTGGCCTTGATAAA+GGG | + | chr1.1:2749131-2749150 | MS.gene24332:intron | 45.0% |
| ! | TATGCCGTTGATGAAATCGG+TGG | + | chr1.1:2748467-2748486 | MS.gene24332:CDS | 45.0% |
| ! | TCACCAGGGATTTTACGGAT+CGG | - | chr1.1:2747517-2747536 | None:intergenic | 45.0% |
| !! | CCACCGGTTCCATTACAATT+TGG | + | chr1.1:2748513-2748532 | MS.gene24332:CDS | 45.0% |
| !! | GTTAGGTCCAGTTCTGAAAC+TGG | + | chr1.1:2748107-2748126 | MS.gene24332:CDS | 45.0% |
| !!! | CTGTTCATGTTTTGGTTCGG+AGG | - | chr1.1:2747836-2747855 | None:intergenic | 45.0% |
| !!! | TGGTGGAAGAGGGTCTTTTT+TGG | - | chr1.1:2747390-2747409 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTATTCATATTAA+GGG | + | chr1.1:2749549-2749568 | MS.gene24332:intron | 5.0% |
| !!! | TTTTTTTTTTATTCATATTA+AGG | + | chr1.1:2749548-2749567 | MS.gene24332:intron | 5.0% |
| AAAGGGATGCCATAGTCACC+AGG | - | chr1.1:2747532-2747551 | None:intergenic | 50.0% | |
| AACCCTGTTGACACCGAACT+TGG | + | chr1.1:2748042-2748061 | MS.gene24332:CDS | 50.0% | |
| AAGGGATGCCATAGTCACCA+GGG | - | chr1.1:2747531-2747550 | None:intergenic | 50.0% | |
| AGCAATTAGATCTGCTGGCG+GGG | + | chr1.1:2748419-2748438 | MS.gene24332:CDS | 50.0% | |
| AGGAACGTTAGTGCGGAAGA+TGG | - | chr1.1:2747644-2747663 | None:intergenic | 50.0% | |
| AGTGAGGTGAGGGTAATAGC+AGG | - | chr1.1:2748876-2748895 | None:intergenic | 50.0% | |
| ATTTATGCTGCAGGAGGAGG+GGG | - | chr1.1:2750172-2750191 | None:intergenic | 50.0% | |
| CCACCAGTGAGTTCTGTAGA+AGG | - | chr1.1:2747787-2747806 | None:intergenic | 50.0% | |
| CCTCCTCCTGCAGCATAAAT+CGG | + | chr1.1:2750172-2750191 | MS.gene24332:intron | 50.0% | |
| CCTTCTACAGAACTCACTGG+TGG | + | chr1.1:2747784-2747803 | MS.gene24332:CDS | 50.0% | |
| CGATTTATGCTGCAGGAGGA+GGG | - | chr1.1:2750174-2750193 | None:intergenic | 50.0% | |
| CTTCCGATCCGTAAAATCCC+TGG | + | chr1.1:2747511-2747530 | MS.gene24332:CDS | 50.0% | |
| GACACCGAACTTGGACTTGA+CGG | + | chr1.1:2748051-2748070 | MS.gene24332:CDS | 50.0% | |
| GAGATGGAGACTTGGAAAGG+TGG | - | chr1.1:2747472-2747491 | None:intergenic | 50.0% | |
| GAGCAATTAGATCTGCTGGC+GGG | + | chr1.1:2748418-2748437 | MS.gene24332:CDS | 50.0% | |
| GATTTATGCTGCAGGAGGAG+GGG | - | chr1.1:2750173-2750192 | None:intergenic | 50.0% | |
| GGAGCAATTAGATCTGCTGG+CGG | + | chr1.1:2748417-2748436 | MS.gene24332:CDS | 50.0% | |
| GGCACTCCAGGAAGGTTATT+TGG | + | chr1.1:2749442-2749461 | MS.gene24332:intron | 50.0% | |
| GTGGTTGAGAGATGGAGACT+TGG | - | chr1.1:2747480-2747499 | None:intergenic | 50.0% | |
| TAGTGCGGAAGATGGTTGAC+TGG | - | chr1.1:2747636-2747655 | None:intergenic | 50.0% | |
| TGAGCTATGAAAGGACCAGG+AGG | - | chr1.1:2747664-2747683 | None:intergenic | 50.0% | |
| TGGACCGTCAAGTCCAAGTT+CGG | - | chr1.1:2748058-2748077 | None:intergenic | 50.0% | |
| TTGATGAAATGGATCGGGCG+CGG | + | chr1.1:2748354-2748373 | MS.gene24332:CDS | 50.0% | |
| ! | ACATGGCCGATTTATGCTGC+AGG | - | chr1.1:2750181-2750200 | None:intergenic | 50.0% |
| ! | CGGGGAAGCTTTTACCATCA+AGG | - | chr1.1:2747708-2747727 | None:intergenic | 50.0% |
| ! | TTGATTCGTACAGTGCAGGC+AGG | + | chr1.1:2749421-2749440 | MS.gene24332:intron | 50.0% |
| !! | AGTCCAAGTTCGGTGTCAAC+AGG | - | chr1.1:2748048-2748067 | None:intergenic | 50.0% |
| !! | CGTGATAAGGTGGTGGAAGA+GGG | - | chr1.1:2747400-2747419 | None:intergenic | 50.0% |
| !! | GACGTTGATTCGTACAGTGC+AGG | + | chr1.1:2749417-2749436 | MS.gene24332:intron | 50.0% |
| !! | GTCCAAGTTCGGTGTCAACA+GGG | - | chr1.1:2748047-2748066 | None:intergenic | 50.0% |
| !! | TCGTGATAAGGTGGTGGAAG+AGG | - | chr1.1:2747401-2747420 | None:intergenic | 50.0% |
| !!! | GTTTTGGTTCGGAGGGATCA+AGG | - | chr1.1:2747828-2747847 | None:intergenic | 50.0% |
| AAGAGGATTTGAGCCGCGTC+TGG | - | chr1.1:2750032-2750051 | None:intergenic | 55.0% | |
| ACTGGGCCTACCGAAGTTTG+TGG | + | chr1.1:2748125-2748144 | MS.gene24332:CDS | 55.0% | |
| AGAGGATTTGAGCCGCGTCT+GGG | - | chr1.1:2750031-2750050 | None:intergenic | 55.0% | |
| ATGTTGCCTTCACCCAGACG+CGG | + | chr1.1:2750016-2750035 | MS.gene24332:intron | 55.0% | |
| CCGATTTATGCTGCAGGAGG+AGG | - | chr1.1:2750175-2750194 | None:intergenic | 55.0% | |
| CGATCTTCGATGCGTCGAAG+AGG | - | chr1.1:2747732-2747751 | None:intergenic | 55.0% | |
| CTTCGATGCGTCGAAGAGGA+CGG | - | chr1.1:2747728-2747747 | None:intergenic | 55.0% | |
| GACCAGGAGGAACGTTAGTG+CGG | - | chr1.1:2747651-2747670 | None:intergenic | 55.0% | |
| GGAACGTCGTGATAAGGTGG+TGG | - | chr1.1:2747407-2747426 | None:intergenic | 55.0% | |
| GGAGATTACTATGGCGGCCA+TGG | + | chr1.1:2748440-2748459 | MS.gene24332:CDS | 55.0% | |
| GGAGGAACGTCGTGATAAGG+TGG | - | chr1.1:2747410-2747429 | None:intergenic | 55.0% | |
| GGTAGGCCCAGTTTCAGAAC+TGG | - | chr1.1:2748117-2748136 | None:intergenic | 55.0% | |
| GGTGGAGGAACGTCGTGATA+AGG | - | chr1.1:2747413-2747432 | None:intergenic | 55.0% | |
| TGCTGGCGGGGAGATTACTA+TGG | + | chr1.1:2748431-2748450 | MS.gene24332:CDS | 55.0% | |
| TGGCGGGGAGATTACTATGG+CGG | + | chr1.1:2748434-2748453 | MS.gene24332:CDS | 55.0% | |
| TTCCGCACTAACGTTCCTCC+TGG | + | chr1.1:2747646-2747665 | MS.gene24332:CDS | 55.0% | |
| TTCCTCGAGAGCAAATCCCG+AGG | - | chr1.1:2748235-2748254 | None:intergenic | 55.0% | |
| TTCGATGCGTCGAAGAGGAC+GGG | - | chr1.1:2747727-2747746 | None:intergenic | 55.0% | |
| ! | CTCGAGGAAGCAGAGCGTTT+AGG | + | chr1.1:2748246-2748265 | MS.gene24332:CDS | 55.0% |
| ! | TGGCCGATTTATGCTGCAGG+AGG | - | chr1.1:2750178-2750197 | None:intergenic | 55.0% |
| ! | TTCCTCGGGATTTGCTCTCG+AGG | + | chr1.1:2748230-2748249 | MS.gene24332:CDS | 55.0% |
| ATGAAATGGATCGGGCGCGG+TGG | + | chr1.1:2748357-2748376 | MS.gene24332:CDS | 60.0% | |
| GCGTCTGGGTGAAGGCAACA+TGG | - | chr1.1:2750017-2750036 | None:intergenic | 60.0% | |
| TCGATGCGTCGAAGAGGACG+GGG | - | chr1.1:2747726-2747745 | None:intergenic | 60.0% | |
| TTTGAGCCGCGTCTGGGTGA+AGG | - | chr1.1:2750025-2750044 | None:intergenic | 60.0% | |
| ACAGTGCAGGCAGGCACTCC+AGG | + | chr1.1:2749430-2749449 | MS.gene24332:intron | 65.0% | |
| TGCAGGCAGGCACTCCAGGA+AGG | + | chr1.1:2749434-2749453 | MS.gene24332:intron | 65.0% | |
| GGATCGGGCGCGGTGGAGTG+AGG | + | chr1.1:2748364-2748383 | MS.gene24332:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 2747340 | 2750688 | 2747340 | ID=MS.gene24332 |
| chr1.1 | mRNA | 2747340 | 2750688 | 2747340 | ID=MS.gene24332.t1;Parent=MS.gene24332 |
| chr1.1 | exon | 2747340 | 2748774 | 2747340 | ID=MS.gene24332.t1.exon1;Parent=MS.gene24332.t1 |
| chr1.1 | CDS | 2747340 | 2748774 | 2747340 | ID=cds.MS.gene24332.t1;Parent=MS.gene24332.t1 |
| chr1.1 | exon | 2750431 | 2750513 | 2750431 | ID=MS.gene24332.t1.exon2;Parent=MS.gene24332.t1 |
| chr1.1 | CDS | 2750431 | 2750513 | 2750431 | ID=cds.MS.gene24332.t1;Parent=MS.gene24332.t1 |
| chr1.1 | exon | 2750671 | 2750688 | 2750671 | ID=MS.gene24332.t1.exon3;Parent=MS.gene24332.t1 |
| chr1.1 | CDS | 2750671 | 2750688 | 2750671 | ID=cds.MS.gene24332.t1;Parent=MS.gene24332.t1 |
| Gene Sequence |
| Protein sequence |
