Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24461.t1 | XP_003618118.2 | 71.8 | 996 | 136 | 13 | 16 | 870 | 10 | 1001 | 0.00E+00 | 1261.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24461.t1 | Q9HGL2 | 26.4 | 364 | 222 | 11 | 20 | 371 | 13 | 342 | 2.7e-14 | 82.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24461.t1 | G7KFG0 | 71.8 | 996 | 136 | 13 | 16 | 870 | 10 | 1001 | 0.0e+00 | 1261.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24461 | MS.gene08324 | PPI |
| MS.gene24461 | MS.gene071438 | PPI |
| MS.gene24461 | MS.gene071439 | PPI |
| MS.gene24461 | MS.gene34936 | PPI |
| MS.gene24461 | MS.gene071437 | PPI |
| MS.gene023295 | MS.gene24461 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24461.t1 | MTR_5g099170 | 71.713 | 1004 | 139 | 13 | 8 | 870 | 2 | 1001 | 0.0 | 1288 |
| MS.gene24461.t1 | MTR_1g018480 | 76.299 | 789 | 88 | 7 | 155 | 870 | 1 | 763 | 0.0 | 1141 |
| MS.gene24461.t1 | MTR_3g115640 | 36.441 | 708 | 338 | 19 | 217 | 833 | 378 | 1064 | 1.26e-105 | 353 |
| MS.gene24461.t1 | MTR_3g115640 | 66.364 | 110 | 34 | 1 | 16 | 125 | 6 | 112 | 5.44e-37 | 150 |
| MS.gene24461.t1 | MTR_3g054130 | 39.080 | 87 | 53 | 0 | 13 | 99 | 15 | 101 | 6.85e-13 | 72.8 |
| MS.gene24461.t1 | MTR_2g025180 | 46.053 | 76 | 41 | 0 | 20 | 95 | 14 | 89 | 2.29e-12 | 70.9 |
| MS.gene24461.t1 | MTR_4g132840 | 39.080 | 87 | 53 | 0 | 13 | 99 | 12 | 98 | 2.51e-12 | 70.9 |
| MS.gene24461.t1 | MTR_5g093720 | 39.080 | 87 | 53 | 0 | 11 | 97 | 10 | 96 | 7.20e-12 | 68.9 |
| MS.gene24461.t1 | MTR_5g093720 | 39.080 | 87 | 53 | 0 | 11 | 97 | 10 | 96 | 9.06e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24461.t1 | AT1G20760 | 36.822 | 1051 | 430 | 34 | 16 | 870 | 7 | 1019 | 1.37e-156 | 485 |
| MS.gene24461.t1 | AT1G21630 | 37.579 | 793 | 335 | 27 | 204 | 866 | 288 | 1050 | 6.17e-100 | 338 |
| MS.gene24461.t1 | AT1G21630 | 48.750 | 160 | 63 | 3 | 18 | 176 | 11 | 152 | 2.20e-37 | 152 |
| MS.gene24461.t1 | AT1G21630 | 39.031 | 702 | 297 | 21 | 204 | 789 | 288 | 974 | 9.46e-100 | 337 |
| MS.gene24461.t1 | AT1G21630 | 48.750 | 160 | 63 | 3 | 18 | 176 | 11 | 152 | 2.36e-37 | 152 |
| MS.gene24461.t1 | AT1G21630 | 36.375 | 822 | 334 | 28 | 204 | 866 | 288 | 1079 | 8.58e-95 | 324 |
| MS.gene24461.t1 | AT1G21630 | 48.750 | 160 | 63 | 3 | 18 | 176 | 11 | 152 | 3.61e-37 | 151 |
| MS.gene24461.t1 | AT1G21630 | 37.620 | 731 | 296 | 22 | 204 | 789 | 288 | 1003 | 1.93e-94 | 323 |
| MS.gene24461.t1 | AT1G21630 | 48.750 | 160 | 63 | 3 | 18 | 176 | 11 | 152 | 3.83e-37 | 151 |
| MS.gene24461.t1 | AT4G05520 | 39.394 | 99 | 60 | 0 | 1 | 99 | 1 | 99 | 3.82e-15 | 79.7 |
| MS.gene24461.t1 | AT4G05520 | 39.394 | 99 | 60 | 0 | 1 | 99 | 1 | 99 | 3.95e-15 | 79.7 |
| MS.gene24461.t1 | AT3G20290 | 40.217 | 92 | 55 | 0 | 6 | 97 | 5 | 96 | 1.58e-14 | 77.8 |
| MS.gene24461.t1 | AT3G20290 | 40.217 | 92 | 55 | 0 | 6 | 97 | 5 | 96 | 1.58e-14 | 77.8 |
| MS.gene24461.t1 | AT3G20290 | 40.217 | 92 | 55 | 0 | 6 | 97 | 5 | 96 | 1.58e-14 | 77.8 |
Find 221 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCCATGACTGGAATTT+TGG | 0.071310 | 1.1:+4442965 | None:intergenic |
| TTAGGCGACGCTACAAATTT+TGG | 0.153429 | 1.1:+4438093 | None:intergenic |
| GACTGATTTCCCCAAGTTAA+AGG | 0.200006 | 1.1:+4443214 | None:intergenic |
| CCCAATCAGCAGCTCCTTCT+TGG | 0.235708 | 1.1:+4439370 | None:intergenic |
| TCTGCCATTCTTCCTGTATC+TGG | 0.243803 | 1.1:-4443884 | MS.gene24461:CDS |
| GACAACTATTTCTTTAGTTC+TGG | 0.248675 | 1.1:-4435090 | MS.gene24461:CDS |
| CTAGAAAAGGATCTGATAAT+TGG | 0.254950 | 1.1:-4434720 | MS.gene24461:CDS |
| AAATCAAGAAGAATGTTATT+TGG | 0.274321 | 1.1:+4443271 | None:intergenic |
| CCAGGCGAACTGTGCATATT+AGG | 0.275868 | 1.1:+4443761 | None:intergenic |
| GTGTCGAAGGTTCCCCAATT+AGG | 0.276032 | 1.1:+4436951 | None:intergenic |
| GACTCGGATCTCTTTGGCTC+TGG | 0.276366 | 1.1:-4434775 | MS.gene24461:CDS |
| TACAGTAGTTACCTTCTTAT+CGG | 0.283458 | 1.1:+4442872 | None:intergenic |
| GTCTCCTTCTTCCAAGGTTC+CGG | 0.300179 | 1.1:-4444623 | MS.gene24461:CDS |
| ATGATGATATCGATTCAGTT+TGG | 0.302385 | 1.1:-4436926 | MS.gene24461:CDS |
| AACTGAAACCACTGGTCTTC+AGG | 0.302436 | 1.1:+4435013 | None:intergenic |
| CTCTCTAATGAAGTCCTAAA+AGG | 0.304432 | 1.1:+4434751 | None:intergenic |
| TTTGATGACTCGGATCTCTT+TGG | 0.311897 | 1.1:-4434781 | MS.gene24461:CDS |
| TCATTCTTGGCCACGGAGAT+TGG | 0.312165 | 1.1:+4443699 | None:intergenic |
| TCTGACTTATCATCACTCTT+AGG | 0.312494 | 1.1:+4438075 | None:intergenic |
| AACTACTTTCCTGCTGTTGC+TGG | 0.321396 | 1.1:-4444202 | MS.gene24461:CDS |
| TCTGACATTCGAAAGACTTC+TGG | 0.321969 | 1.1:-4437913 | MS.gene24461:CDS |
| TCCTCCGCCTTGCCTGCTTA+TGG | 0.325960 | 1.1:-4444163 | MS.gene24461:CDS |
| GTCCAACGGGTGCGGATGGC+GGG | 0.331699 | 1.1:+4444239 | None:intergenic |
| TCCAACGGGTGCGGATGGCG+GGG | 0.332002 | 1.1:+4444240 | None:intergenic |
| TGATGATATCGATTCAGTTT+GGG | 0.337637 | 1.1:-4436925 | MS.gene24461:CDS |
| GGCAAGGCGGAGGAAGTTGC+AGG | 0.341202 | 1.1:+4444172 | None:intergenic |
| CATTCTTGGCCACGGAGATT+GGG | 0.342600 | 1.1:+4443700 | None:intergenic |
| AATGAACTGTGCAAGAAGTA+TGG | 0.345060 | 1.1:-4441249 | MS.gene24461:CDS |
| CAGAGGTTTCAAAGCAGGTT+TGG | 0.347675 | 1.1:-4443402 | MS.gene24461:CDS |
| CCTCCCTGTGTCGCTCCATT+AGG | 0.351212 | 1.1:+4443317 | None:intergenic |
| CGATGGACTTGTTTCTTAGT+TGG | 0.354413 | 1.1:-4443595 | MS.gene24461:CDS |
| AATGCACTGTAGACTATTTC+AGG | 0.357919 | 1.1:+4444325 | None:intergenic |
| GGTCCAACGGGTGCGGATGG+CGG | 0.363460 | 1.1:+4444238 | None:intergenic |
| CAGCAAGTGATGACTGGATC+TGG | 0.364695 | 1.1:-4443080 | MS.gene24461:CDS |
| AGAGGTTTCAAAGCAGGTTT+GGG | 0.364710 | 1.1:-4443401 | MS.gene24461:CDS |
| ACCAGTCTTTAGGCCTTTGC+GGG | 0.364725 | 1.1:+4434944 | None:intergenic |
| CGGACAGAATCAAATCTTAC+TGG | 0.366998 | 1.1:+4434838 | None:intergenic |
| GAACCAGCATGCCTCCATTC+AGG | 0.374679 | 1.1:-4443786 | MS.gene24461:CDS |
| GCTTCAACTCAGGAGGAGTT+TGG | 0.378393 | 1.1:-4444082 | MS.gene24461:CDS |
| TGGACTTTCAGTCAGATTGC+AGG | 0.382374 | 1.1:-4443741 | MS.gene24461:CDS |
| CAATTCTATCCTTGATGAAC+TGG | 0.388302 | 1.1:-4441283 | MS.gene24461:CDS |
| GGTTGTGAACACAAAAGCTT+TGG | 0.390128 | 1.1:-4438127 | MS.gene24461:CDS |
| TGCTGATTGGGATGAGGATT+GGG | 0.390477 | 1.1:-4439358 | MS.gene24461:CDS |
| AACCAGTCTTTAGGCCTTTG+CGG | 0.393780 | 1.1:+4434943 | None:intergenic |
| ATCTCCTTAGTCCTTTAACT+TGG | 0.394574 | 1.1:-4443225 | MS.gene24461:CDS |
| CCAACGGGTGCGGATGGCGG+GGG | 0.395766 | 1.1:+4444241 | None:intergenic |
| TCTCCTTAGTCCTTTAACTT+GGG | 0.407046 | 1.1:-4443224 | MS.gene24461:CDS |
| GGCTTCCTCGGTTATCAACT+TGG | 0.408259 | 1.1:+4441600 | None:intergenic |
| TTTCTTTAGTTCTGGAGACC+TGG | 0.408705 | 1.1:-4435082 | MS.gene24461:CDS |
| GTGTTCTCCAACCAGTCTTT+AGG | 0.410323 | 1.1:+4434934 | None:intergenic |
| ACATTAGTAGAGCTACCTTT+TGG | 0.412296 | 1.1:-4441207 | MS.gene24461:intron |
| CCTAATATGCACAGTTCGCC+TGG | 0.414066 | 1.1:-4443761 | MS.gene24461:CDS |
| CCAAGAAGGAGCTGCTGATT+GGG | 0.414207 | 1.1:-4439370 | MS.gene24461:CDS |
| GATGGACTTGTTTCTTAGTT+GGG | 0.426024 | 1.1:-4443594 | MS.gene24461:CDS |
| CTCTGGTTCCCTCCAGATAC+AGG | 0.426137 | 1.1:+4443872 | None:intergenic |
| GAGGGAACCAGAGTTCTATT+AGG | 0.427729 | 1.1:-4443862 | MS.gene24461:CDS |
| CTGCTGATTGGGATGAGGAT+TGG | 0.428599 | 1.1:-4439359 | MS.gene24461:CDS |
| CCTGCTTATGGCAACATGAC+TGG | 0.429348 | 1.1:-4444151 | MS.gene24461:CDS |
| TTCTGAGGTCCTTCGTCAGA+TGG | 0.429930 | 1.1:+4443002 | None:intergenic |
| AGACCTGAGCAAGGATTTGT+TGG | 0.431121 | 1.1:+4444594 | None:intergenic |
| CTTGGTGGCCGACCTGCAGT+AGG | 0.432092 | 1.1:+4443041 | None:intergenic |
| TCCAAGAAGGAGCTGCTGAT+TGG | 0.435562 | 1.1:-4439371 | MS.gene24461:CDS |
| TGTTATTGGACCTGTATGTC+AGG | 0.437076 | 1.1:+4441571 | None:intergenic |
| ACTCGGATCTCTTTGGCTCT+GGG | 0.438429 | 1.1:-4434774 | MS.gene24461:CDS |
| GACCTGAGCAAGGATTTGTT+GGG | 0.439523 | 1.1:+4444595 | None:intergenic |
| TGGGACAAGCTCGAAGATAA+AGG | 0.441718 | 1.1:-4439339 | MS.gene24461:intron |
| TTCCCCAAGTTAAAGGACTA+AGG | 0.443179 | 1.1:+4443221 | None:intergenic |
| GCCCCAACAAATCCTTGCTC+AGG | 0.443814 | 1.1:-4444597 | MS.gene24461:intron |
| GTCTTAACGAGACCACAAAA+AGG | 0.444080 | 1.1:-4441790 | MS.gene24461:CDS |
| GAAGATAAATATAAGCAAGT+TGG | 0.450494 | 1.1:-4441634 | MS.gene24461:CDS |
| TAATGTATCTTTACCTGCTC+GGG | 0.450789 | 1.1:-4434872 | MS.gene24461:CDS |
| ATCCTCGTGGAGAAGAATCT+TGG | 0.453009 | 1.1:+4443912 | None:intergenic |
| TGTGATTGTGTAGGCCATGT+GGG | 0.453274 | 1.1:+4444022 | None:intergenic |
| CTTGCATACCTCTTTGCTAC+TGG | 0.456702 | 1.1:+4436893 | None:intergenic |
| CTCCTTAGTCCTTTAACTTG+GGG | 0.457594 | 1.1:-4443223 | MS.gene24461:CDS |
| TGGGAAAATCACAAGGGAAC+AGG | 0.457949 | 1.1:-4443618 | MS.gene24461:CDS |
| TGGCAGGTTGACCACTAGTC+AGG | 0.459340 | 1.1:+4443248 | None:intergenic |
| ATGTTATTTGGAAGTACAGC+TGG | 0.459709 | 1.1:+4443283 | None:intergenic |
| TTCTTTAGTTCTGGAGACCT+GGG | 0.461210 | 1.1:-4435081 | MS.gene24461:CDS |
| CAACATCAGCAAGTGATGAC+TGG | 0.461510 | 1.1:-4443086 | MS.gene24461:CDS |
| AGCAAGTGATGACTGGATCT+GGG | 0.467888 | 1.1:-4443079 | MS.gene24461:CDS |
| GAGCTGAAAAGTGGGGTGCT+TGG | 0.470554 | 1.1:+4434976 | None:intergenic |
| GTCAGGGAATGTGGCTTCCT+CGG | 0.471464 | 1.1:+4441588 | None:intergenic |
| TTAACTTGGGGAAATCAGTC+AGG | 0.472403 | 1.1:-4443211 | MS.gene24461:intron |
| CGTGGAGAAGAATCTTGGTT+GGG | 0.472806 | 1.1:+4443917 | None:intergenic |
| GGTGGTTGTGCTTCCCGAGC+AGG | 0.473964 | 1.1:+4434859 | None:intergenic |
| GGAGGGACAGCAGCCGTCCT+TGG | 0.475788 | 1.1:+4443023 | None:intergenic |
| GAGAGAGAGCTGGATGGAGC+TGG | 0.476810 | 1.1:-4435114 | MS.gene24461:CDS |
| GAGAGTCAAACTCCTAGAAA+AGG | 0.478375 | 1.1:-4434733 | MS.gene24461:CDS |
| TTCCTCCAACGTGCGGTCGT+TGG | 0.478706 | 1.1:+4444116 | None:intergenic |
| TGATTTGGAAATGGTCCAAC+GGG | 0.480168 | 1.1:+4444226 | None:intergenic |
| CTTCTTGATTTCCTGACTAG+TGG | 0.482904 | 1.1:-4443259 | MS.gene24461:CDS |
| AGCCACATTCCCTGACATAC+AGG | 0.483110 | 1.1:-4441581 | MS.gene24461:intron |
| ATGAGATGCTTCTCCATGAC+TGG | 0.483738 | 1.1:+4442957 | None:intergenic |
| GGGACAGCAGCCGTCCTTGG+TGG | 0.487192 | 1.1:+4443026 | None:intergenic |
| AGCAACAGAAGCCGATAAGA+AGG | 0.488269 | 1.1:-4442883 | MS.gene24461:intron |
| AGATTGCAGGATTCTGCGTC+AGG | 0.488541 | 1.1:-4443728 | MS.gene24461:CDS |
| GGGAAATTGATCTGAGGAGC+AGG | 0.488902 | 1.1:+4444277 | None:intergenic |
| AATGGTCCAACGGGTGCGGA+TGG | 0.490955 | 1.1:+4444235 | None:intergenic |
| AACTGCTTGAGCTGAAAAGT+GGG | 0.491275 | 1.1:+4434968 | None:intergenic |
| CTGCTTGCAAATGGACGGTT+AGG | 0.491492 | 1.1:+4437970 | None:intergenic |
| TACTATCGGAAGTCCACATA+GGG | 0.492381 | 1.1:-4437947 | MS.gene24461:CDS |
| CCAGTCATGTTGCCATAAGC+AGG | 0.497085 | 1.1:+4444151 | None:intergenic |
| CCCTCCAGATACAGGAAGAA+TGG | 0.497277 | 1.1:+4443880 | None:intergenic |
| TCAAGAGTGTATTCTTTGAC+AGG | 0.499945 | 1.1:+4438192 | None:intergenic |
| CCGATAGTACTGCTTGCAAA+TGG | 0.504423 | 1.1:+4437961 | None:intergenic |
| AAGGATTTGTTGGGGCAAAC+CGG | 0.505428 | 1.1:+4444604 | None:intergenic |
| CATGCTATCATTATCTTGAT+CGG | 0.505568 | 1.1:+4443372 | None:intergenic |
| GAACTGCTTGAGCTGAAAAG+TGG | 0.506973 | 1.1:+4434967 | None:intergenic |
| GATTTCTGCTGCTTGTTCTG+AGG | 0.514331 | 1.1:+4442987 | None:intergenic |
| TGCACCTAATGGAGCGACAC+AGG | 0.514439 | 1.1:-4443321 | MS.gene24461:CDS |
| ATAATGTATCTTTACCTGCT+CGG | 0.515163 | 1.1:-4434873 | MS.gene24461:CDS |
| ACGACCGTCGCAATCCAAAT+CGG | 0.516438 | 1.1:+4444664 | None:intergenic |
| CAATATCCTACCTCTGTCAA+TGG | 0.520393 | 1.1:-4444001 | MS.gene24461:CDS |
| AGTTAAAGGACTAAGGAGAT+TGG | 0.520793 | 1.1:+4443228 | None:intergenic |
| TAGTCATACTGCTTCAACTC+AGG | 0.521255 | 1.1:-4444092 | MS.gene24461:CDS |
| GGGCGAAGTCCAGCAACAGC+AGG | 0.521376 | 1.1:+4444193 | None:intergenic |
| GCAGCTCCTTCTTGGATACC+AGG | 0.522331 | 1.1:+4439378 | None:intergenic |
| ATAGTCTACAGTGCATTGTA+TGG | 0.523125 | 1.1:-4444319 | MS.gene24461:CDS |
| GAAGCCGTCTCCTTCTTCCA+AGG | 0.523721 | 1.1:-4444629 | MS.gene24461:CDS |
| CTCCAACGACCGCACGTTGG+AGG | 0.525830 | 1.1:-4444118 | MS.gene24461:CDS |
| GAGATTTCACCAGTTCATCA+AGG | 0.530082 | 1.1:+4441274 | None:intergenic |
| GAAATCCAAAATTCCAGTCA+TGG | 0.530741 | 1.1:-4442970 | MS.gene24461:CDS |
| AAAGGACTAAGGAGATTGGC+AGG | 0.533429 | 1.1:+4443232 | None:intergenic |
| GTGCATATTAGGTGCCTGAA+TGG | 0.533486 | 1.1:+4443772 | None:intergenic |
| TGCAATCTGACTGAAAGTCC+AGG | 0.547653 | 1.1:+4443743 | None:intergenic |
| CCCCGCAAAGGCCTAAAGAC+TGG | 0.548144 | 1.1:-4434945 | MS.gene24461:CDS |
| GTGATTGTGTAGGCCATGTG+GGG | 0.548388 | 1.1:+4444023 | None:intergenic |
| ATTCTTGGCCACGGAGATTG+GGG | 0.549173 | 1.1:+4443701 | None:intergenic |
| GTGCCTGAATGGAGGCATGC+TGG | 0.550485 | 1.1:+4443783 | None:intergenic |
| GTTGGGGCAAACCGGAACCT+TGG | 0.552590 | 1.1:+4444612 | None:intergenic |
| CGCAATCCAAATCGGCGAGA+CGG | 0.554129 | 1.1:+4444672 | None:intergenic |
| CTGCAAAGAATCAGAGGTGG+TGG | 0.554201 | 1.1:+4443838 | None:intergenic |
| GCCATTCTTCCTGTATCTGG+AGG | 0.554937 | 1.1:-4443881 | MS.gene24461:CDS |
| TGAGGTCCTTCGTCAGATGG+AGG | 0.555421 | 1.1:+4443005 | None:intergenic |
| TGGAAATGGTCCAACGGGTG+CGG | 0.555673 | 1.1:+4444231 | None:intergenic |
| TGATTGTGTAGGCCATGTGG+GGG | 0.556489 | 1.1:+4444024 | None:intergenic |
| AATCACAAGGGAACAGGCGA+TGG | 0.560183 | 1.1:-4443612 | MS.gene24461:CDS |
| TTGGTTGGGCTGAGATGAGG+TGG | 0.560528 | 1.1:+4443931 | None:intergenic |
| CAATGCACTTAAACTTGTCA+CGG | 0.561921 | 1.1:-4444374 | MS.gene24461:CDS |
| TGGTGGTCCTAATAGAACTC+TGG | 0.561930 | 1.1:+4443855 | None:intergenic |
| GATGATATCGATTCAGTTTG+GGG | 0.565888 | 1.1:-4436924 | MS.gene24461:CDS |
| GATATCATCATTTGTGTCGA+AGG | 0.566001 | 1.1:+4436938 | None:intergenic |
| AGGTAGCTCTACTAATGTCG+TGG | 0.568076 | 1.1:+4441212 | None:intergenic |
| TTGGTGGCCGACCTGCAGTA+GGG | 0.569666 | 1.1:+4443042 | None:intergenic |
| ATCATCAAAACTGAAACCAC+TGG | 0.572900 | 1.1:+4435005 | None:intergenic |
| CGACATGTCAACCCTACTGC+AGG | 0.573256 | 1.1:-4443053 | MS.gene24461:CDS |
| TGCAGGTCGGCCACCAAGGA+CGG | 0.573659 | 1.1:-4443036 | MS.gene24461:CDS |
| TATCATTATCTTGATCGGAT+AGG | 0.573737 | 1.1:+4443377 | None:intergenic |
| CCATTTGCAAGCAGTACTAT+CGG | 0.574980 | 1.1:-4437961 | MS.gene24461:CDS |
| GCCATAAGCAGGCAAGGCGG+AGG | 0.576502 | 1.1:+4444162 | None:intergenic |
| AGGAGCTGCTGATTGGGATG+AGG | 0.578287 | 1.1:-4439364 | MS.gene24461:CDS |
| GCAAAGGCCTAAAGACTGGT+TGG | 0.578539 | 1.1:-4434941 | MS.gene24461:CDS |
| ACAATACCATTGACAGAGGT+AGG | 0.578660 | 1.1:+4443995 | None:intergenic |
| CAAACCGGAACCTTGGAAGA+AGG | 0.579844 | 1.1:+4444619 | None:intergenic |
| CCATTCTTCCTGTATCTGGA+GGG | 0.582597 | 1.1:-4443880 | MS.gene24461:CDS |
| CTACTGCAGGTCGGCCACCA+AGG | 0.583234 | 1.1:-4443040 | MS.gene24461:CDS |
| AATCCTTTAGGCTGGCAACC+TGG | 0.583706 | 1.1:-4439396 | MS.gene24461:intron |
| GCTCAAGCAGTTCCCCGCAA+AGG | 0.583752 | 1.1:-4434957 | MS.gene24461:CDS |
| GATCTCTTCCTGAAGACCAG+TGG | 0.584662 | 1.1:-4435021 | MS.gene24461:CDS |
| GAATGAACAAAGCCCCTATG+TGG | 0.584763 | 1.1:+4437934 | None:intergenic |
| TTGATTTGGAAATGGTCCAA+CGG | 0.585549 | 1.1:+4444225 | None:intergenic |
| TTACAGGAGAGAGAGCTGGA+TGG | 0.585980 | 1.1:-4435120 | MS.gene24461:intron |
| GGTAGCTCTACTAATGTCGT+GGG | 0.588321 | 1.1:+4441213 | None:intergenic |
| TCGTGGAGAAGAATCTTGGT+TGG | 0.589465 | 1.1:+4443916 | None:intergenic |
| CCAACGTGCGGTCGTTGGAG+AGG | 0.589732 | 1.1:+4444121 | None:intergenic |
| CGTCAGACTACAAATGAACA+AGG | 0.590413 | 1.1:-4438048 | MS.gene24461:CDS |
| CATGTTGCCATAAGCAGGCA+AGG | 0.592659 | 1.1:+4444156 | None:intergenic |
| GACCTGTATGTCAGGGAATG+TGG | 0.595549 | 1.1:+4441579 | None:intergenic |
| AAAACATCTTCACCACAGGC+TGG | 0.596872 | 1.1:-4435045 | MS.gene24461:CDS |
| ATCATTGTCAGCGACTAATG+TGG | 0.597816 | 1.1:-4444714 | MS.gene24461:CDS |
| CTCGCCGATTTGGATTGCGA+CGG | 0.598545 | 1.1:-4444668 | MS.gene24461:CDS |
| CATTAAAACATCTTCACCAC+AGG | 0.599364 | 1.1:-4435049 | MS.gene24461:CDS |
| TTGTGATTGTGTAGGCCATG+TGG | 0.600604 | 1.1:+4444021 | None:intergenic |
| GAGGTCCTTCGTCAGATGGA+GGG | 0.603769 | 1.1:+4443006 | None:intergenic |
| TATGGCAACATGACTGGAGG+AGG | 0.608487 | 1.1:-4444145 | MS.gene24461:CDS |
| TGGCAACCTGGTATCCAAGA+AGG | 0.611414 | 1.1:-4439384 | MS.gene24461:CDS |
| GTAGGATATTGTGATTGTGT+AGG | 0.618275 | 1.1:+4444013 | None:intergenic |
| GTACTATCGGAAGTCCACAT+AGG | 0.618358 | 1.1:-4437948 | MS.gene24461:CDS |
| GTTATTGGACCTGTATGTCA+GGG | 0.619557 | 1.1:+4441572 | None:intergenic |
| GATTGCGACGGTCGTATCAG+CGG | 0.625790 | 1.1:-4444656 | MS.gene24461:CDS |
| ACTACAAATGAACAAGGAGT+AGG | 0.626367 | 1.1:-4438042 | MS.gene24461:CDS |
| TAGTACTGCTTGCAAATGGA+CGG | 0.626855 | 1.1:+4437965 | None:intergenic |
| AATTGATTTGATCAGCAGCA+CGG | 0.630795 | 1.1:+4441301 | None:intergenic |
| CCTCTCCAACGACCGCACGT+TGG | 0.630821 | 1.1:-4444121 | MS.gene24461:CDS |
| TGAGCTCTGCAAAGAATCAG+AGG | 0.631063 | 1.1:+4443832 | None:intergenic |
| GCACCTAATGGAGCGACACA+GGG | 0.631831 | 1.1:-4443320 | MS.gene24461:CDS |
| GCAAGTGATGACTGGATCTG+GGG | 0.637744 | 1.1:-4443078 | MS.gene24461:CDS |
| TCATACTGCTTCAACTCAGG+AGG | 0.639092 | 1.1:-4444089 | MS.gene24461:CDS |
| ATAGAGATGGGAAAATCACA+AGG | 0.644134 | 1.1:-4443625 | MS.gene24461:intron |
| GCAAGGCGGAGGAAGTTGCA+GGG | 0.644535 | 1.1:+4444173 | None:intergenic |
| CTAATGGAGCGACACAGGGA+GGG | 0.649839 | 1.1:-4443316 | MS.gene24461:CDS |
| TCCAAAACAAAAGCAACCAA+AGG | 0.650907 | 1.1:-4438148 | MS.gene24461:CDS |
| ACCTGAGCAAGGATTTGTTG+GGG | 0.651606 | 1.1:+4444596 | None:intergenic |
| GCTGTCCCTCCATCTGACGA+AGG | 0.652200 | 1.1:-4443011 | MS.gene24461:CDS |
| CTTAGTTGGGCATTACCAAG+AGG | 0.652440 | 1.1:-4443581 | MS.gene24461:intron |
| ATCTTGGTTGGGCTGAGATG+AGG | 0.653612 | 1.1:+4443928 | None:intergenic |
| GATATATGCTGATAAACATG+AGG | 0.653871 | 1.1:-4441768 | MS.gene24461:intron |
| ATTCAATGCCAGTAGCAAAG+AGG | 0.669713 | 1.1:-4436901 | MS.gene24461:intron |
| CCAGTCTTTAGGCCTTTGCG+GGG | 0.670401 | 1.1:+4434945 | None:intergenic |
| ACAGAATCAAATCTTACTGG+TGG | 0.671680 | 1.1:+4434841 | None:intergenic |
| AATGAACAAGGAGTAGGCAA+CGG | 0.671842 | 1.1:-4438036 | MS.gene24461:CDS |
| GGAACCTTGGAAGAAGGAGA+CGG | 0.672275 | 1.1:+4444625 | None:intergenic |
| GATCAAAATTCGCACTACTG+CGG | 0.674396 | 1.1:+4434818 | None:intergenic |
| GATTGTGTAGGCCATGTGGG+GGG | 0.676472 | 1.1:+4444025 | None:intergenic |
| GTGGCAGGGAAATTGATCTG+AGG | 0.681520 | 1.1:+4444271 | None:intergenic |
| AGGAAGAGATCACCAGCCTG+TGG | 0.681624 | 1.1:+4435033 | None:intergenic |
| CATATTAGGTGCCTGAATGG+AGG | 0.684163 | 1.1:+4443775 | None:intergenic |
| CCTAATGGAGCGACACAGGG+AGG | 0.684554 | 1.1:-4443317 | MS.gene24461:CDS |
| GCTTATGGCAACATGACTGG+AGG | 0.687347 | 1.1:-4444148 | MS.gene24461:CDS |
| ATCATCCAAGTTGATAACCG+AGG | 0.694322 | 1.1:-4441605 | MS.gene24461:CDS |
| AGCAACAATACCATTGACAG+AGG | 0.702416 | 1.1:+4443991 | None:intergenic |
| ATGTCAACCCTACTGCAGGT+CGG | 0.704032 | 1.1:-4443049 | MS.gene24461:CDS |
| TGACTAGTTCCTCCAACGTG+CGG | 0.704697 | 1.1:+4444109 | None:intergenic |
| ATGGCAGATGAAAATCCTCG+TGG | 0.714682 | 1.1:+4443899 | None:intergenic |
| TAGAGATGGGAAAATCACAA+GGG | 0.716741 | 1.1:-4443624 | MS.gene24461:CDS |
| AACCAAGATTCTTCTCCACG+AGG | 0.717979 | 1.1:-4443914 | MS.gene24461:CDS |
| ACTGCTTGAGCTGAAAAGTG+GGG | 0.724007 | 1.1:+4434969 | None:intergenic |
| GCTCTGCAAAGAATCAGAGG+TGG | 0.735278 | 1.1:+4443835 | None:intergenic |
| ACTATCGGAAGTCCACATAG+GGG | 0.740160 | 1.1:-4437946 | MS.gene24461:CDS |
| GTTGCCATAAGCAGGCAAGG+CGG | 0.769229 | 1.1:+4444159 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 4434708 | 4444765 | 4434708 | ID=MS.gene24461 |
| chr1.1 | mRNA | 4434708 | 4444765 | 4434708 | ID=MS.gene24461.t1;Parent=MS.gene24461 |
| chr1.1 | exon | 4444598 | 4444765 | 4444598 | ID=MS.gene24461.t1.exon1;Parent=MS.gene24461.t1 |
| chr1.1 | CDS | 4444598 | 4444765 | 4444598 | ID=cds.MS.gene24461.t1;Parent=MS.gene24461.t1 |
| chr1.1 | exon | 4443713 | 4444452 | 4443713 | ID=MS.gene24461.t1.exon2;Parent=MS.gene24461.t1 |
| chr1.1 | CDS | 4443713 | 4444452 | 4443713 | ID=cds.MS.gene24461.t1;Parent=MS.gene24461.t1 |
| chr1.1 | exon | 4443582 | 4443643 | 4443582 | ID=MS.gene24461.t1.exon3;Parent=MS.gene24461.t1 |
| chr1.1 | CDS | 4443582 | 4443643 | 4443582 | ID=cds.MS.gene24461.t1;Parent=MS.gene24461.t1 |
| chr1.1 | exon | 4443212 | 4443421 | 4443212 | ID=MS.gene24461.t1.exon4;Parent=MS.gene24461.t1 |
| chr1.1 | CDS | 4443212 | 4443421 | 4443212 | ID=cds.MS.gene24461.t1;Parent=MS.gene24461.t1 |
| chr1.1 | exon | 4442884 | 4443113 | 4442884 | ID=MS.gene24461.t1.exon5;Parent=MS.gene24461.t1 |
| chr1.1 | CDS | 4442884 | 4443113 | 4442884 | ID=cds.MS.gene24461.t1;Parent=MS.gene24461.t1 |
| chr1.1 | exon | 4441769 | 4441840 | 4441769 | ID=MS.gene24461.t1.exon6;Parent=MS.gene24461.t1 |
| chr1.1 | CDS | 4441769 | 4441840 | 4441769 | ID=cds.MS.gene24461.t1;Parent=MS.gene24461.t1 |
| chr1.1 | exon | 4441582 | 4441680 | 4441582 | ID=MS.gene24461.t1.exon7;Parent=MS.gene24461.t1 |
| chr1.1 | CDS | 4441582 | 4441680 | 4441582 | ID=cds.MS.gene24461.t1;Parent=MS.gene24461.t1 |
| chr1.1 | exon | 4441208 | 4441325 | 4441208 | ID=MS.gene24461.t1.exon8;Parent=MS.gene24461.t1 |
| chr1.1 | CDS | 4441208 | 4441325 | 4441208 | ID=cds.MS.gene24461.t1;Parent=MS.gene24461.t1 |
| chr1.1 | exon | 4439340 | 4439408 | 4439340 | ID=MS.gene24461.t1.exon9;Parent=MS.gene24461.t1 |
| chr1.1 | CDS | 4439340 | 4439408 | 4439340 | ID=cds.MS.gene24461.t1;Parent=MS.gene24461.t1 |
| chr1.1 | exon | 4437896 | 4438222 | 4437896 | ID=MS.gene24461.t1.exon10;Parent=MS.gene24461.t1 |
| chr1.1 | CDS | 4437896 | 4438222 | 4437896 | ID=cds.MS.gene24461.t1;Parent=MS.gene24461.t1 |
| chr1.1 | exon | 4436902 | 4436990 | 4436902 | ID=MS.gene24461.t1.exon11;Parent=MS.gene24461.t1 |
| chr1.1 | CDS | 4436902 | 4436990 | 4436902 | ID=cds.MS.gene24461.t1;Parent=MS.gene24461.t1 |
| chr1.1 | exon | 4434708 | 4435136 | 4434708 | ID=MS.gene24461.t1.exon12;Parent=MS.gene24461.t1 |
| chr1.1 | CDS | 4434708 | 4435136 | 4434708 | ID=cds.MS.gene24461.t1;Parent=MS.gene24461.t1 |
| Gene Sequence |
| Protein sequence |
